RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10239
(100 letters)
>2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod
glycosylated protein, hydrolase; HET: NAG FUC SCK SCU
P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A*
1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A*
2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A*
2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ...
Length = 543
Score = 55.9 bits (135), Expect = 7e-11
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 27 KRNMRYHLSEILATIINEYTDWERPVQHPVNIRDETLEALSDAMVVAPSVNTADLHSSAR 86
+ + ++ YTDW P + P ++RD + D VV P A ++
Sbjct: 364 RIGVPQASDLAAEAVVLHYTDWLHP-EDPTHLRDAMSAVVGDHNVVCPVAQLAGRLAAQG 422
Query: 87 S 87
+
Sbjct: 423 A 423
>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase,
cell adhesion, cell J glycoprotein, membrane,
postsynaptic cell membrane; HET: NAG; 1.80A {Rattus
norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A*
2vh8_A 3bl8_A*
Length = 574
Score = 55.6 bits (134), Expect = 1e-10
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 8 EEEEEEKKKEEEKKKEEEEKRNMRYHLS--EILATIINEYTDWERPVQHPVNIRDETLEA 65
+ ++ + + Y + TI YTDW +P R L
Sbjct: 351 DSDDGVSASDFDFAVSNFVDNLYGYPEGKDVLRETIKFMYTDWADR-HNPETRRKTLLAL 409
Query: 66 LSDAMVVAPSVNTADLHSSARS 87
+D VAP+V TADLHS+ S
Sbjct: 410 FTDHQWVAPAVATADLHSNFGS 431
>1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase,
neurotransmitter cleavage, catalytic triad, alpha/beta
hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP:
c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A*
1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A
1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A*
1vxr_A* ...
Length = 537
Score = 53.9 bits (130), Expect = 4e-10
Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 27 KRNMRYHLSEILATIINEYTDWERPVQHPVNIRDETLEALSDAMVVAPSVNTADLHSSAR 86
K ++ + L + +YTDW + + RD + + D V+ P ++ + ++
Sbjct: 357 KLSVPHANDLGLDAVTLQYTDWMDD-NNGIKNRDGLDDIVGDHNVICPLMHFVNKYTKFG 415
Query: 87 S 87
+
Sbjct: 416 N 416
>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC
MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A*
1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A*
3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A*
2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...
Length = 529
Score = 51.6 bits (124), Expect = 3e-09
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 27 KRNMRYHLSEILATIINEYTDWERPVQHPVNIRDETLEALSDAMVVAPSVNTADLHSSA 85
K +I+ YTDW Q P N R+ + + D + P++ S
Sbjct: 355 KIFFPGVSEFGKESILFHYTDWVDD-QRPENYREALGDVVGDYNFICPALEFTKKFSEW 412
>1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse,
membrane, nerve, muscle neurotransmitter degradation,
glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila
melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A*
Length = 585
Score = 50.2 bits (120), Expect = 7e-09
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 2/54 (3%)
Query: 32 YHLSEILATIINEYTDWERPVQHPVNIRDETLEALSDAMVVAPSVNTADLHSSA 85
II +YT WE + + A+ D P+ A +
Sbjct: 403 KATQAEREAIIFQYTSWEGN--PGYQNQQQIGRAVGDHFFTCPTNEYAQALAER 454
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 48.1 bits (115), Expect = 4e-08
Identities = 6/54 (11%), Positives = 14/54 (25%)
Query: 32 YHLSEILATIINEYTDWERPVQHPVNIRDETLEALSDAMVVAPSVNTADLHSSA 85
YT+ + ++ +D + + P+ H S
Sbjct: 354 TKGLRGAQATYEVYTEPWAQDSSQETRKKTMVDLETDILFLIPTKIAVAQHKSH 407
>2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase;
HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP:
c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A*
1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A*
2hrq_A* 3k9b_A* 1k4y_A*
Length = 542
Score = 44.7 bits (106), Expect = 7e-07
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 35 SEILATIINEYTDWERPVQHPVNIRDETLEALSDAMVVAPSVNTADLHSSA 85
E++ +Y V +D L+ ++D M PSV A H A
Sbjct: 374 KELIPEATEKYLGGTDD---TVKKKDLFLDLIADVMFGVPSVIVARNHRDA 421
>2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase,
hydrolase; 1.58A {Geobacillus stearothermophilus} PDB:
2ogs_A
Length = 498
Score = 44.2 bits (105), Expect = 1e-06
Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 23 EEEEKRNMRYHLSEILATIINEYTDWERPVQHPVNIRDETLEALSDAMVVAPSVNTADLH 82
E+E + + + I Y + P L ++ + V + TAD
Sbjct: 326 EKELLDRINREVGPVPEEAIRYYKETAEP---SAPTWQTWLRIMTYRVFVEGMLRTADAQ 382
Query: 83 SSARS 87
++ +
Sbjct: 383 AAQGA 387
>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H;
HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17
Length = 522
Score = 39.3 bits (92), Expect = 6e-05
Identities = 9/54 (16%), Positives = 15/54 (27%), Gaps = 1/54 (1%)
Query: 35 SEILATIINEYTDWERPVQHPVNIRDETLEALSDAMVVAPSVNTADLHSSARSV 88
S+ L I Y + + + A DA P + A +
Sbjct: 349 SQQLNEINQVYPRGK-LLPRHAAYFGASSAAYGDATFTCPGNHVASSAARYLPN 401
>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase
directed evolution; 1.50A {Bacillus subtilis} SCOP:
c.69.1.1 PDB: 1c7j_A 1c7i_A
Length = 489
Score = 34.2 bits (79), Expect = 0.004
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 11/67 (16%)
Query: 23 EEEEKRNMRYHLSEILA-TIINEYTDWERPVQHPVNIRDETLEALSDAMVVAPSVNTADL 81
+E + Y L + LA + Y + + ++D + P+V A
Sbjct: 324 QETLDAALEYLLGKPLAEKAADLYPRS----------LESQIHMMTDLLFWRPAVAYASA 373
Query: 82 HSSARSV 88
S V
Sbjct: 374 QSHYAPV 380
>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A
{Galactomyces geotrichum} SCOP: c.69.1.17
Length = 544
Score = 33.2 bits (76), Expect = 0.006
Identities = 6/62 (9%), Positives = 12/62 (19%), Gaps = 10/62 (16%)
Query: 35 SEILATIINEYTDWERPVQHPVNIRDET---------LEALSDAMVVAPSVNTADLHSSA 85
+ +++ Y P LSD + +P
Sbjct: 384 EASIDRVLSLYPQTLSV-GSPFRTGILNALTPQFKRVAAILSDMLFQSPRRVMLSATKDV 442
Query: 86 RS 87
Sbjct: 443 NR 444
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 31.8 bits (73), Expect = 0.018
Identities = 6/52 (11%), Positives = 13/52 (25%), Gaps = 2/52 (3%)
Query: 1 MNKEKKEEEEEEEKKKEEEKKKEE--EEKRNMRYHLSEILATIINEYTDWER 50
+ E EE ++ K ++ T+ + W
Sbjct: 228 LLHENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKKVKKWTL 279
>1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester
acylh hydrolase; HET: NAG F23; 1.40A {Candida
cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A*
1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A*
1gz7_A*
Length = 534
Score = 31.3 bits (71), Expect = 0.038
Identities = 5/60 (8%), Positives = 11/60 (18%), Gaps = 10/60 (16%)
Query: 35 SEILATIINEYTDWERPVQHPVNIRDET---------LEALSDAMVVAPSVNTADLHSSA 85
+ T++ Y P + L D + +
Sbjct: 371 DAEIDTLMAAYPQDITQ-GSPFDTGIFNAITPQFKRISAVLGDLAFIHARRYFLNHFQGG 429
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 30.3 bits (69), Expect = 0.076
Identities = 11/49 (22%), Positives = 17/49 (34%)
Query: 2 NKEKKEEEEEEEKKKEEEKKKEEEEKRNMRYHLSEILATIINEYTDWER 50
++ EEEE K+E+E +E + DWE
Sbjct: 219 ETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWEL 267
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 29.5 bits (67), Expect = 0.14
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 2 NKEKKEEEEEEEKKKEEEKKKEEEE 26
K+ + EE +EEK + E++ KE E
Sbjct: 253 TKDFELEETDEEKAEREKEIKEYEP 277
Score = 25.3 bits (56), Expect = 4.2
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 5 KKEEEEEEEKKKEEEKKKEEEEKRNMRYHLSE 36
+ EE +EE+ ++E+E K+ E + ++ L +
Sbjct: 257 ELEETDEEKAEREKEIKEYEPLTKALKEILGD 288
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 0.16
Identities = 9/48 (18%), Positives = 19/48 (39%)
Query: 3 KEKKEEEEEEEKKKEEEKKKEEEEKRNMRYHLSEILATIINEYTDWER 50
+E E K +EE++K+ +E + E + +W +
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQ 125
Score = 28.6 bits (63), Expect = 0.30
Identities = 6/43 (13%), Positives = 17/43 (39%)
Query: 2 NKEKKEEEEEEEKKKEEEKKKEEEEKRNMRYHLSEILATIINE 44
K +E + + ++E ++K +++ SE +
Sbjct: 95 RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 137
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 29.4 bits (65), Expect = 0.18
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 1 MNKEKKEEEEEEEKKKEEEKKKEEEEKRNMR 31
MNK++ E+E E ++ +E + + M+
Sbjct: 316 MNKDQILLEKEAELRRMQEMIARMQAQMQMQ 346
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 29.0 bits (65), Expect = 0.24
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 2 NKEKKEEEEEEEKKKEEEKKKEEEE 26
K+ + EE +EEK + E++ KE E
Sbjct: 525 TKDFELEETDEEKAEREKEIKEYEP 549
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces
cerevisiae} SCOP: d.14.1.8
Length = 288
Score = 28.7 bits (65), Expect = 0.24
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 2 NKEKKEEEEEEEKKKEEEKKKEEEE 26
K+ + EE +EEK + E++ KE E
Sbjct: 253 TKDFELEETDEEKAEREKEIKEYEP 277
Score = 25.2 bits (56), Expect = 3.4
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 5 KKEEEEEEEKKKEEEKKKEEEEKRNMRYHLSE 36
+ EE +EE+ ++E+E K+ E + ++ L +
Sbjct: 257 ELEETDEEKAEREKEIKEYEPLTKALKEILGD 288
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 28.9 bits (65), Expect = 0.25
Identities = 13/63 (20%), Positives = 25/63 (39%)
Query: 3 KEKKEEEEEEEKKKEEEKKKEEEEKRNMRYHLSEILATIINEYTDWERPVQHPVNIRDET 62
+++ + + E+K EE K + E + L E + E + R + ET
Sbjct: 997 RKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITET 1056
Query: 63 LEA 65
+E
Sbjct: 1057 MEK 1059
Score = 27.8 bits (62), Expect = 0.64
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 1 MNKEKKEEEEEEEKKKEEEKKKEEEEKRN 29
+ + KK E K + ++K +E+ K
Sbjct: 916 VERYKKLHIGLENKIMQLQRKIDEQNKEY 944
Score = 27.4 bits (61), Expect = 0.79
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 3 KEKKEEEEEEEKKKEEEKKKEEEEKRNMRYHLSEILATI 41
+ K +E+ +E K E+ E L + +
Sbjct: 934 QRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERL 972
Score = 26.6 bits (59), Expect = 1.3
Identities = 10/66 (15%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 3 KEKKEEEEEEEKKKEEEKKKEEEEKRNMRYHLSEILATIINEYTDWERPVQHPVNIRDET 62
EK + E + EEE K +++ +++ L +++ ++ ++ +
Sbjct: 962 TEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAK-LRKELHQTQTEKKTIEEWADKYKHE 1020
Query: 63 LEALSD 68
E L
Sbjct: 1021 TEQLVS 1026
Score = 25.8 bits (57), Expect = 2.6
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 3 KEKKEEEEEEEKKKEEEKKKEEEEKRNM 30
+ E E+ + E + EEE +N
Sbjct: 955 EITYSTETEKLRSDVERLRMSEEEAKNA 982
Score = 25.5 bits (56), Expect = 3.8
Identities = 8/68 (11%), Positives = 22/68 (32%)
Query: 3 KEKKEEEEEEEKKKEEEKKKEEEEKRNMRYHLSEILATIINEYTDWERPVQHPVNIRDET 62
+ +EE K +E + + EK+ + + ++ + ++E
Sbjct: 983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEEL 1042
Query: 63 LEALSDAM 70
+ D
Sbjct: 1043 NRRIHDQA 1050
Score = 25.5 bits (56), Expect = 4.1
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 2 NKEKKEEEEEEEKKKEE-EKKKEEEEKRNMR 31
EKK EE +K K E E+ E +++N
Sbjct: 1004 QTEKKTIEEWADKYKHETEQLVSELKEQNTL 1034
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 28.3 bits (63), Expect = 0.39
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 4 EKKEEEEEEEKKKEEEKKKEEEEKRNMRYHLSEILATI 41
+ EEEEE ++ + EKKK +++ ++ L E A
Sbjct: 934 ARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAAR 971
Score = 26.7 bits (59), Expect = 1.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 3 KEKKEEEEEEEKKKEEEKKKEEEEKRNMR 31
+E+ EEEE +K + EK + + + M
Sbjct: 961 EEQLEEEEAARQKLQLEKVTADGKIKKME 989
Score = 25.2 bits (55), Expect = 4.5
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 3 KEKKEEEEEEEKKKEEEKKKEEEEKRNMRYHLSE 36
+E E E +++EE ++ + EK+ M+ + +
Sbjct: 926 EEILHEMEARIEEEEERSQQLQAEKKKMQQQMLD 959
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 27.7 bits (62), Expect = 0.40
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 2 NKEKKEEEEEEEKKKEEEKKKEEEEK 27
E K + +K E KK + E
Sbjct: 86 GYEMKRVGDYYVFEKRESKKSKGGEA 111
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 27.9 bits (62), Expect = 0.42
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 3 KEKKEEEEEEEKKKEEEKKKEEEEK 27
KE+K++ +EKK+ ++++ EE
Sbjct: 105 KEQKKQLTSQEKKQIRLEREKFEED 129
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins
binding, carbohydrate binding, calcium binding,
endoplasmic reticulu; 2.57A {Mus musculus}
Length = 332
Score = 28.1 bits (62), Expect = 0.49
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 3 KEKKEEEEEEEKKKEEEKKKEEEEKRN 29
K E++ ++K+ EE++ K E +
Sbjct: 305 VTKAAEKQMKDKQDEEQRLKLEHHHHH 331
Score = 26.2 bits (57), Expect = 1.9
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 3 KEKKEEEEEEEKKKEEEKKKEEEEKR 28
K E++ + K++EE++ + E
Sbjct: 304 GVTKAAEKQMKDKQDEEQRLKLEHHH 329
Score = 24.6 bits (53), Expect = 8.0
Identities = 4/27 (14%), Positives = 14/27 (51%)
Query: 3 KEKKEEEEEEEKKKEEEKKKEEEEKRN 29
+ E++ ++++ +E+ K E +
Sbjct: 306 TKAAEKQMKDKQDEEQRLKLEHHHHHH 332
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM,
splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo
sapiens} PDB: 3cw1_A
Length = 231
Score = 27.7 bits (61), Expect = 0.57
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 1 MNKEKKEEEEEEEKKKEEEKKKEEEEKR 28
MN + +E + K + K+ E EEKR
Sbjct: 38 MNLILCDCDEFRKIKPKNSKQAEREEKR 65
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 27.5 bits (61), Expect = 0.69
Identities = 8/30 (26%), Positives = 20/30 (66%)
Query: 2 NKEKKEEEEEEEKKKEEEKKKEEEEKRNMR 31
N+ ++++EEEE++ E + +E+ +R +
Sbjct: 395 NENMRKKKEEEERRARMEAQLKEQRERERK 424
Score = 26.0 bits (57), Expect = 2.4
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 2 NKEKKEEEEEEEKKKEEEKKKEEEEKRNMR 31
N KK+EEEE + E + K++ E +R MR
Sbjct: 397 NMRKKKEEEERRARMEAQLKEQRERERKMR 426
Score = 24.5 bits (53), Expect = 7.3
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 2 NKEKKEEEEEEEKKKEEEKKKEEEEKRNMR 31
++ K+E E +KK+EEE++ E + +
Sbjct: 389 SEAKQENENMRKKKEEEERRARMEAQLKEQ 418
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 27.3 bits (61), Expect = 0.78
Identities = 3/28 (10%), Positives = 10/28 (35%)
Query: 1 MNKEKKEEEEEEEKKKEEEKKKEEEEKR 28
+ + K E + + + E + +
Sbjct: 921 VQAKLKNLEAFDGECQSLEGQSNSDLLS 948
Score = 25.0 bits (55), Expect = 5.2
Identities = 1/24 (4%), Positives = 5/24 (20%)
Query: 4 EKKEEEEEEEKKKEEEKKKEEEEK 27
E + + + +
Sbjct: 939 EGQSNSDLLSILAQLTELNYNGVP 962
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP,
deubiquitinating enzyme, substrate recognition; 3.20A
{Homo sapiens}
Length = 522
Score = 26.9 bits (59), Expect = 1.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 8 EEEEEEKKKEEEKKKEEEE 26
E +EEK+ E +K+KE +E
Sbjct: 504 ERLQEEKRIEAQKRKERQE 522
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 26.6 bits (58), Expect = 1.4
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 1 MNKEKKEEEEEEEKKKEEEKKKEEEEKRN 29
++ KE ++ K E ++ + N
Sbjct: 232 SDERVKEFKQSLIKYMETQRSYTALAEAN 260
Score = 26.2 bits (57), Expect = 1.9
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 3 KEKKEEEEEEEKKKEEEKKKEEEEKRNMR 31
+E ++ K+ K E ++
Sbjct: 227 CGPVGSDERVKEFKQSLIKYMETQRSYTA 255
Score = 25.8 bits (56), Expect = 2.7
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 1 MNKEKKEEEEEEEKKKEEEKKKEEEEKRNMR 31
+K +E K+ ++ K E +R+
Sbjct: 224 RSKCGPVGSDERVKEFKQSLIKYMETQRSYT 254
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination,
hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9
PDB: 1nbf_A
Length = 353
Score = 26.4 bits (58), Expect = 1.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 8 EEEEEEKKKEEEKKKEEEE 26
E +EEK+ E +K+KE +E
Sbjct: 335 ERLQEEKRIEAQKRKERQE 353
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 26.5 bits (59), Expect = 1.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 8 EEEEEEKKKEEEKKKEEEE 26
EE EEEK++ EE+K E+
Sbjct: 278 EESEEEKQQREEEKAACEK 296
Score = 25.3 bits (56), Expect = 4.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 2 NKEKKEEEEEEEKKKEEEKKKEEEE 26
KE EE EE+K++ E++K E
Sbjct: 271 TKEGVHFEESEEEKQQREEEKAACE 295
Score = 25.3 bits (56), Expect = 4.6
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 7 EEEEEEEKKKEEEKKKEEEEKRNMRYHLSE 36
EE EEE++++EEEK E+ + M+ L +
Sbjct: 278 EESEEEKQQREEEKAACEKLCKTMKEVLGD 307
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer,
hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Length = 448
Score = 26.1 bits (58), Expect = 1.9
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 8 EEEEEEKKKEEEKKKEEEE 26
E+EEEKKK+EEKK + E
Sbjct: 262 PEDEEEKKKQEEKKTKFEN 280
Score = 25.0 bits (55), Expect = 6.0
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 2 NKEKKEEEEEEEKKKEEEKKKEEEE 26
KE E E+EE+KK++E+KK + E
Sbjct: 255 TKEGLELPEDEEEKKKQEEKKTKFE 279
Score = 24.6 bits (54), Expect = 6.8
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 7 EEEEEEEKKKEEEKKKEEE 25
E+EEE+KK+EE+K K E
Sbjct: 262 PEDEEEKKKQEEKKTKFEN 280
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 26.2 bits (57), Expect = 2.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 3 KEKKEEEEEEEKKKEEEKKKEEEEK 27
+EKK +EEKK +EK+ E E
Sbjct: 115 REKKLSRTKEEKKAIKEKQDAEAEP 139
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA
splicing, adenine, mRNA processing, nucleus,
phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo
sapiens} PDB: 2f9d_A 2f9j_A 2fho_B
Length = 115
Score = 25.8 bits (57), Expect = 2.1
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 3 KEKKEEEEEEEKKKEEEKKKEEEE 26
+ ++ + KKKEE+ K +E+
Sbjct: 83 NANRAFQKMDTKKKEEQLKLLKEK 106
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 26.3 bits (58), Expect = 2.1
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 2 NKEKKEEEEEEEKKKEEEKKKEEEEKRN 29
N++++E EE+ + K ++K E+E
Sbjct: 312 NQKRRETEEKMRRAKLAKEKAEKERLEK 339
Score = 25.9 bits (57), Expect = 2.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 3 KEKKEEEEEEEKKKEEEKKKEEEEKRNMR 31
KE ++ E EEK + + KE+ EK +
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERLE 338
Score = 24.3 bits (53), Expect = 8.2
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 1 MNKEKKEEEEEEEKKKEEEKKKEEEEKR 28
K ++ EE+ K +EK ++E ++
Sbjct: 312 NQKRRETEEKMRRAKLAKEKAEKERLEK 339
>2l16_A SEC-independent protein translocase protein tatad; membrane
protein, protein transport; NMR {Bacillus subtilis}
Length = 78
Score = 24.9 bits (54), Expect = 2.5
Identities = 3/27 (11%), Positives = 12/27 (44%)
Query: 3 KEKKEEEEEEEKKKEEEKKKEEEEKRN 29
+++++ E K+++ E +
Sbjct: 52 EKEEKSAELTAVKQDKNAGLEHHHHHH 78
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease,
hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo
sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A*
1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*
Length = 441
Score = 25.5 bits (56), Expect = 3.3
Identities = 9/46 (19%), Positives = 12/46 (26%), Gaps = 1/46 (2%)
Query: 4 EKKEEEEEEEKKKEEEKKKEEEEKRNMRYHLSEILATIINE-YTDW 48
+K E K +E+ N Y IN W
Sbjct: 116 KKVGTASENVYVNTAHLKNSQEKYSNRLYKYDHNFVKAINAIQKSW 161
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 25.5 bits (55), Expect = 3.7
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 3 KEKKEEEEEEEKKKEEEKKKEEEEK 27
E +++ +EEK K +E+ ++ ++
Sbjct: 139 TEARKQMSKEEKLKIKEENEKLLKE 163
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.4 bits (55), Expect = 3.9
Identities = 7/32 (21%), Positives = 9/32 (28%), Gaps = 4/32 (12%)
Query: 28 RNMRYHLSEILAT----IINEYTDWERPVQHP 55
++R I II WE Q
Sbjct: 466 SDLRVLSGSISERIVDCIIRLPVKWETTTQFK 497
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 295
Score = 25.0 bits (54), Expect = 4.9
Identities = 14/55 (25%), Positives = 22/55 (40%)
Query: 1 MNKEKKEEEEEEEKKKEEEKKKEEEEKRNMRYHLSEILATIINEYTDWERPVQHP 55
+ + EE E+E++ EK +EE + + E DW VQ P
Sbjct: 201 LYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTAAQPEVADWSEGVQVP 255
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 24.8 bits (54), Expect = 5.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 3 KEKKEEEEEEEKKKEEEKKKEEEEKRNMR 31
KE ++ E EEK + + KE+ EK +
Sbjct: 381 KENQKRRETEEKMRRAKLAKEKAEKERLE 409
>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein;
HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP:
e.57.1.1
Length = 392
Score = 25.0 bits (54), Expect = 5.4
Identities = 3/40 (7%), Positives = 13/40 (32%)
Query: 3 KEKKEEEEEEEKKKEEEKKKEEEEKRNMRYHLSEILATII 42
+ + ++E + E+ + R + ++
Sbjct: 265 ELIDQLKKEHDSAASLEQSLRVQLVRLAKTAYVDVFINWF 304
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed
coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A
{Homo sapiens} PDB: 3sde_B
Length = 261
Score = 24.7 bits (54), Expect = 5.6
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 4 EKKEEEEEEEKKKEEEKKKEEEEKRNMRYHLSEIL 38
EK++ E+ + +E ++K E E + H ++
Sbjct: 227 EKQQREQVDRNIREAKEKLEAEMEAARHEHQLMLM 261
>1qs1_A ADP-ribosyltransferase; alpha-beta protein, binary toxin,
insecticial protein; 1.50A {Bacillus cereus} SCOP:
d.166.1.1 d.166.1.1 PDB: 1qs2_A*
Length = 462
Score = 24.9 bits (53), Expect = 5.9
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 3 KEKKEEEEEEEKKKEEEKKKEEEEKRNMRYHLSEILATIINEYTDWERPVQHPVNIRDET 62
KE KE+ +E K+KE+E K EK M L I Y + + +
Sbjct: 67 KEDKEKAKEWGKEKEKEWKLTATEKGKMNNFLDN-KNDIKTNYKEITFSMAGSFEDEIKD 125
Query: 63 LEALSDAM 70
L+ +
Sbjct: 126 LKEIDKMF 133
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96;
HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A*
2o1w_A 2o1t_A
Length = 666
Score = 25.0 bits (55), Expect = 6.1
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 8 EEEEEEKKKEEEKKKEEEE 26
+E E+ K+ E +KE E
Sbjct: 511 DESEKTKESREAIEKEFEP 529
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 24.7 bits (54), Expect = 6.5
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 2 NKEKKEEEEEEEKKKEEEKKKEEEEK 27
++E E E + EE K + E+
Sbjct: 200 SEEAAEAVLEGDASLEEVKAEASEDN 225
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_B
Length = 241
Score = 24.8 bits (54), Expect = 6.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 4 EKKEEEEEEEKKKEEEKKKEEEE 26
E+KE EEEE + EEK E +E
Sbjct: 207 EQKEAEEEEGAEGAEEKVAEVKE 229
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 24.6 bits (54), Expect = 6.7
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 9 EEEEEKKKEEEKKKEEEEKRN 29
E+E E +++ E E+++N
Sbjct: 534 EKENEMLAQDKLVAETEDRKN 554
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 152
Score = 24.2 bits (52), Expect = 7.6
Identities = 3/65 (4%), Positives = 22/65 (33%), Gaps = 9/65 (13%)
Query: 13 EKKKEEEKKKEEEEKRNMRYHLSEI-------LATIINEYTDWERPVQHPVNIRDETLEA 65
+ ++++ ++ ++ + + I +A + + +++ L
Sbjct: 86 WEFEKDKDREHDKLVELCKIQFAAIPWDKFTQVAKF--SIPEDTEIFEGSLDLEQMRLRR 143
Query: 66 LSDAM 70
+ +
Sbjct: 144 VQTGI 148
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 24.6 bits (53), Expect = 7.6
Identities = 3/25 (12%), Positives = 10/25 (40%)
Query: 3 KEKKEEEEEEEKKKEEEKKKEEEEK 27
+ + EE ++ E+ ++
Sbjct: 223 QVLRWAGPEERLRRVAERVAARVQR 247
>1rxq_A YFIT; nickel-binding, hydrolase, helix-bundle, structural genomics
protein structure initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.70A {Bacillus
subtilis} SCOP: a.213.1.1
Length = 178
Score = 24.2 bits (52), Expect = 7.9
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 25 EEKRNMRYHLSEILATIINEYTDWERPVQHPVNIRDETLEAL 66
+ + + +L T+ ++ ++R HP TLE
Sbjct: 114 ALLQELHGRWTALLRTLTDQ--QFKRGFYHPDTKEIITLENA 153
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 24.5 bits (53), Expect = 7.9
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 4 EKKEEEEEEEKKKEEEKKKEEEEK 27
E+ E++ EE EE ++E +E+
Sbjct: 208 EEVEQQVAEEATTEEAGEEEAKEE 231
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET:
FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 24.7 bits (53), Expect = 7.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 3 KEKKEEEEEEEKKKEEEKKKEE 24
K K EE+ E K+ E E+K +
Sbjct: 6 KVKTSEEQAEAKRLEREQKLKL 27
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 24.5 bits (54), Expect = 8.4
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 2 NKEKKEEEEEEEKKKEEEKKKEEEEKRNMRYHLSEILATIIN 43
KE ++ E++K EKK+ E++ +L + + N
Sbjct: 69 AKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGN 110
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein,
oxidoreductase, thiamine diphosphate, thiamine
pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A
{Escherichia coli} PDB: 2jgd_B*
Length = 933
Score = 24.5 bits (54), Expect = 8.5
Identities = 8/67 (11%), Positives = 23/67 (34%)
Query: 8 EEEEEEKKKEEEKKKEEEEKRNMRYHLSEILATIINEYTDWERPVQHPVNIRDETLEALS 67
E+ E + + + + + + Y + E ++P + + L+ L+
Sbjct: 499 LEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELA 558
Query: 68 DAMVVAP 74
+ P
Sbjct: 559 KRISTVP 565
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium
smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Length = 868
Score = 24.4 bits (54), Expect = 8.7
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 6 KEEEEEEEKKKEEEKKKEEEEKRNMRYHLSEILATIINEYTDWERPVQHPVNIRDETLEA 65
+E E+ + + + ++ E R + H E ++ D + P + + L+
Sbjct: 427 MKEAEDALRDYQGQLERVFNEVRELEKHEIEPSESV---EADQQIPSKLATAVDKAMLQR 483
Query: 66 LSDAMVVAP 74
+ DA + P
Sbjct: 484 IGDAHLALP 492
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION
channel mechanosensitive, membrane protein; 3.50A
{Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Length = 174
Score = 24.4 bits (52), Expect = 8.9
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 1 MNKEKKEEEEEEEKKKEEE 19
N +K+ E E+ +
Sbjct: 117 YNTLRKKGEVEQPGDTQVV 135
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 24.5 bits (52), Expect = 9.0
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 2 NKEKKEEEEEEEKKKEEEKKKEEEEK 27
+ EE+ + E E + K
Sbjct: 90 AASAAKPEEKASEVVAETPSAEAKPK 115
>3iz5_V 60S ribosomal protein L17 (L22P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_V
Length = 171
Score = 23.8 bits (51), Expect = 9.3
Identities = 2/30 (6%), Positives = 6/30 (20%)
Query: 5 KKEEEEEEEKKKEEEKKKEEEEKRNMRYHL 34
+ + + K E +
Sbjct: 82 GRWPAKSARFILDLLKNAESNAEVKGLDVD 111
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase
2; protein-RNA complex, ligase-RNA complex; HET: GSU;
3.37A {Thermotoga maritima}
Length = 592
Score = 24.1 bits (53), Expect = 9.8
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 6 KEEEEEEEKKKEEEKKKEEEEKR 28
KE+ +E E + +E+
Sbjct: 237 KEDPSKELFTTYEYPHEYKEKGH 259
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli,
hydrolase; 1.90A {Escherichia coli}
Length = 303
Score = 24.1 bits (53), Expect = 9.9
Identities = 1/22 (4%), Positives = 5/22 (22%)
Query: 7 EEEEEEEKKKEEEKKKEEEEKR 28
E+ + + +
Sbjct: 263 EKLADGDLGTLVPRGSMAISDP 284
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex,
aminoacyl-tRNA synthetase, ATP-binding, ligase,
nucleotide-binding; HET: GSU; 2.00A {Thermotoga
maritima} PDB: 3akz_B*
Length = 488
Score = 24.0 bits (53), Expect = 10.0
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 6 KEEEEEEEKKKEEEKKKEEEEKR 28
KE+ +E E + +E+
Sbjct: 133 KEDPSKELFTTYEYPHEYKEKGH 155
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.305 0.121 0.324
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,455,912
Number of extensions: 79131
Number of successful extensions: 1370
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1020
Number of HSP's successfully gapped: 430
Length of query: 100
Length of database: 6,701,793
Length adjustment: 66
Effective length of query: 34
Effective length of database: 4,859,007
Effective search space: 165206238
Effective search space used: 165206238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 51 (24.2 bits)