RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10239
(100 letters)
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 28.9 bits (65), Expect = 0.067
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 1 MNKEKKEEEEEEEKKKEEEKKKEEEEK 27
+ KE+K++ +EKK+ ++++ EE
Sbjct: 103 LQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 23.1 bits (50), Expect = 6.7
Identities = 7/23 (30%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Query: 9 EEEEEKKKE---EEKKKEEEEKR 28
+ ++E+KK+ +EKK+ E+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLERE 124
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 28.1 bits (63), Expect = 0.12
Identities = 6/27 (22%), Positives = 16/27 (59%)
Query: 1 MNKEKKEEEEEEEKKKEEEKKKEEEEK 27
E +++ +EEK K +E+ ++ ++
Sbjct: 111 AQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 23.5 bits (51), Expect = 4.8
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 1 MNKEKKEEEEEEEKKKEEEKKKEEEEKRNM 30
M++ K + E ++ +EEK K +EE +
Sbjct: 105 MSQYFKAQTEARKQMSKEEKLKIKEENEKL 134
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 109
Score = 27.4 bits (61), Expect = 0.17
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 1 MNKEKKEEEEEEEKKKEEE 19
N +K+ E E+ +
Sbjct: 85 YNTLRKKGEVEQPGDTQVV 103
>d1qs1a1 d.166.1.1 (A:60-264) Vegetative insecticidal protein 2
(VIP2) {Bacillus cereus [TaxId: 1396]}
Length = 205
Score = 26.9 bits (59), Expect = 0.42
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 3 KEKKEEEEEEEKKKEEEKKKEEEEKRNMRYHLSEILATIINEYTDWERPVQHPVNIRDET 62
KE KE+ +E K+KE+E K EK M L I Y + + +
Sbjct: 8 KEDKEKAKEWGKEKEKEWKLTATEKGKMNNFLDNK-NDIKTNYKEITFSMAGSFEDEIKD 66
Query: 63 LEALSDAM 70
L+ +
Sbjct: 67 LKEIDKMF 74
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 25.3 bits (55), Expect = 1.5
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 3 KEKKEEEEEEEKKKEEEKKKEEEEK 27
+K+ E EE+ ++ + K+K E+E+
Sbjct: 307 NQKRRETEEKMRRAKLAKEKAEKER 331
Score = 24.9 bits (54), Expect = 1.7
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 2 NKEKKEEEEEEEKKKEEEKKKEEE 25
N++++E EE+ + K ++K E+E
Sbjct: 307 NQKRRETEEKMRRAKLAKEKAEKE 330
Score = 24.5 bits (53), Expect = 3.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 3 KEKKEEEEEEEKKKEEEKKKEEEEKRNM 30
KE ++ E EEK + + KE+ EK +
Sbjct: 305 KENQKRRETEEKMRRAKLAKEKAEKERL 332
>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 24.4 bits (53), Expect = 3.5
Identities = 3/39 (7%), Positives = 12/39 (30%)
Query: 4 EKKEEEEEEEKKKEEEKKKEEEEKRNMRYHLSEILATII 42
+ ++E + E+ + R + ++
Sbjct: 262 LIDQLKKEHDSAASLEQSLRVQLVRLAKTAYVDVFINWF 300
>d1s6ya2 d.162.1.2 (A:173-445) 6-phospho-beta-glucosidase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 270
Score = 23.7 bits (51), Expect = 4.4
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 3 KEKKEEEEEEEKKKEEEKKKEEEEKRNMRYHLSEILATIINEYTDWERPVQHPVNIRDE- 61
++ ++E E K K + EKR Y+ + I + Y D + PVN R+
Sbjct: 114 QQLEKELFELYKDPNLAIKPPQLEKRGGAYYSDAACSLISSIYND--KRDIQPVNTRNNG 171
Query: 62 TLEALSDAMVV 72
+ ++S V
Sbjct: 172 AIASISAESAV 182
>d1r45a_ d.166.1.1 (A:) Exoenzyme c3 {Clostridium botulinum C
bacteriophage [TaxId: 12336]}
Length = 201
Score = 23.5 bits (50), Expect = 5.4
Identities = 9/67 (13%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 4 EKKEEEEEEEKKKEEEKKKEEEEKRNMRYHLSEILATIINEYTDWERPVQHPVNIRDETL 63
EE ++ + ++ + E+ ++++ + A+ IN R Q N +
Sbjct: 7 TNVEEAKKWGNAQYKKYGLSKPEQEAIKFYTRD--ASKINGPL---RANQGNENGLPADI 61
Query: 64 EALSDAM 70
+
Sbjct: 62 LQKVKLI 68
>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT
{Escherichia coli [TaxId: 562]}
Length = 360
Score = 23.5 bits (49), Expect = 6.3
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 55 PVNIRDETLEALSDAMVVAPSVNTADLHSSARS 87
P + E L+ + + T+ + S R
Sbjct: 9 PAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRG 41
>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus
thermophilus [TaxId: 274]}
Length = 138
Score = 23.0 bits (49), Expect = 7.2
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 3 KEKKEEEEEEEKKKEEEKKKEEEEK 27
K + + + ++ + E KEE +K
Sbjct: 113 KLRADRKRIDQDRAAERAAKEEAQK 137
>d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase
{Thermotoga maritima [TaxId: 2336]}
Length = 253
Score = 23.3 bits (50), Expect = 7.8
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 5 KKEEEEEEEKKKEEEKKKEEEEKRNMRYHLSEILATIINEYTDWERPVQHPVNIRDE-TL 63
K E+E EK + + EE KR + + I + TD H VN R+ ++
Sbjct: 104 MKIEKELFEKYRTAVEIPEELTKRGGSMYSTAAAHLIRDLETD--EGKIHIVNTRNNGSI 161
Query: 64 EALSDAMVV 72
E L D V+
Sbjct: 162 ENLPDDYVL 170
>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate
aminotransferase {Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 23.0 bits (48), Expect = 8.2
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 55 PVNIRDETLEALSDAMV 71
PV + + LEAL+ +
Sbjct: 8 PVRLHPKALEALARPQL 24
>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase
{Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}
Length = 388
Score = 23.1 bits (48), Expect = 9.0
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 55 PVNIRDETLEALSDAMV 71
P N L A+++ ++
Sbjct: 25 PSNCSKRVLTAMTNTVL 41
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 22.5 bits (48), Expect = 9.0
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 5 KKEEEEEEEKKKEEEKKKEEEEK 27
K+ E E K+ + E+ +
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.305 0.121 0.324
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 352,198
Number of extensions: 15374
Number of successful extensions: 287
Number of sequences better than 10.0: 1
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 142
Length of query: 100
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 38
Effective length of database: 1,556,336
Effective search space: 59140768
Effective search space used: 59140768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 47 (22.1 bits)