BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1024
(514 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q62901|RERE_RAT Arginine-glutamic acid dipeptide repeats protein OS=Rattus norvegicus
GN=Rere PE=2 SV=2
Length = 1559
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 34/46 (73%), Gaps = 2/46 (4%)
Query: 375 FLRHWNRGDYNSCCRTDLTFKPVPDSKLARKREERLRKQAEREREE 420
F +H +RG YNSC RTDL F P+ SKLA+KREE + K A+RE E+
Sbjct: 1125 FYKHLDRG-YNSCARTDLYFMPLAGSKLAKKREEAIEK-AKREAEQ 1168
>sp|Q80TZ9|RERE_MOUSE Arginine-glutamic acid dipeptide repeats protein OS=Mus musculus
GN=Rere PE=1 SV=3
Length = 1558
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 34/46 (73%), Gaps = 2/46 (4%)
Query: 375 FLRHWNRGDYNSCCRTDLTFKPVPDSKLARKREERLRKQAEREREE 420
F +H +RG YNSC RTDL F P+ SKLA+KREE + K A+RE E+
Sbjct: 1125 FYKHLDRG-YNSCARTDLYFMPLAGSKLAKKREEAIEK-AKREAEQ 1168
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 9/55 (16%)
Query: 312 IEDSECHRSQSAIFLRHWNRGDYNSCCRTDLTFKPVPDSKLAR--------KREE 358
+ D+ H SQSA F +H +RG YNSC RTDL F P+ SKLA+ + E
Sbjct: 1112 VVDTPSHASQSARFYKHLDRG-YNSCARTDLYFMPLAGSKLAKKREEAIEKAKRE 1165
>sp|Q9P2R6|RERE_HUMAN Arginine-glutamic acid dipeptide repeats protein OS=Homo sapiens
GN=RERE PE=1 SV=2
Length = 1566
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 34/46 (73%), Gaps = 2/46 (4%)
Query: 375 FLRHWNRGDYNSCCRTDLTFKPVPDSKLARKREERLRKQAEREREE 420
F +H +RG YNSC RTDL F P+ SKLA+KREE + K A+RE E+
Sbjct: 1133 FYKHLDRG-YNSCARTDLYFMPLAGSKLAKKREEAIEK-AKREAEQ 1176
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 9/55 (16%)
Query: 312 IEDSECHRSQSAIFLRHWNRG----DYNSCCRTDLTFKPVPDSKLARKREERLRK 362
+ D+ H SQSA F +H +RG RTDL F P+ SKLA+KREE + K
Sbjct: 1120 VVDTPSHASQSARFYKHLDRGYNSC-----ARTDLYFMPLAGSKLAKKREEAIEK 1169
>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
(isolate 3D7) GN=PF13_0198 PE=3 SV=1
Length = 3130
Score = 52.4 bits (124), Expect = 9e-06, Method: Composition-based stats.
Identities = 41/164 (25%), Positives = 83/164 (50%), Gaps = 33/164 (20%)
Query: 352 LARKREERLRKQAELKIKLFCPVFLRHWNRGDYNSCCRTDLTFKPVPDSKLARKREERLR 411
L R+ +ERL+K+ ELK + +L R+++E+L+
Sbjct: 2739 LKRQEQERLQKEEELKRQ----------------------------EQERLEREKQEQLQ 2770
Query: 412 KQAEREREEREKAQASMCNLLSRNPERIDTPR--RRGGGGGGEEEEEEEGEEEEEEKEKK 469
K+ E +R+E+E+ Q L + ER+ +R E E++E+ ++EEE K ++
Sbjct: 2771 KEEELKRQEQERLQKEEA-LKRQEQERLQKEEELKRQEQERLEREKQEQLQKEEELKRQE 2829
Query: 470 KEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLHR 513
+E+ +K++ K++++E ++EEE K+ +++ R+ E R
Sbjct: 2830 QERLQKEEALKRQEQERLQKEEELKR--QEQERLERKKIELAER 2871
>sp|O35126|ATN1_MOUSE Atrophin-1 OS=Mus musculus GN=Atn1 PE=1 SV=1
Length = 1175
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 375 FLRHWNRGDYNSCCRTDLTFKPVPDSKLARKREERLRKQAEREREER 421
F +H +RG +NSC R+DL F P+ SKLA+KR + L ++ RE E+R
Sbjct: 751 FNKHLDRG-FNSCARSDLYFVPLEGSKLAKKRAD-LVEKVRREAEQR 795
>sp|P54258|ATN1_RAT Atrophin-1 OS=Rattus norvegicus GN=Atn1 PE=2 SV=1
Length = 1183
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 375 FLRHWNRGDYNSCCRTDLTFKPVPDSKLARKREERLRKQAEREREER 421
F +H +RG +NSC R+DL F P+ SKLA+KR + L ++ RE E+R
Sbjct: 759 FNKHLDRG-FNSCARSDLYFVPLEGSKLAKKRAD-LVEKVRREAEQR 803
>sp|Q5IS70|ATN1_PANTR Atrophin-1 OS=Pan troglodytes GN=ATN1 PE=2 SV=1
Length = 1186
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 375 FLRHWNRGDYNSCCRTDLTFKPVPDSKLARKREERLRKQAEREREER 421
F +H +RG +NSC R+DL F P+ SKLA+KR + L ++ RE E+R
Sbjct: 762 FNKHLDRG-FNSCARSDLYFVPLEGSKLAKKRAD-LVEKVRREAEQR 806
>sp|P54259|ATN1_HUMAN Atrophin-1 OS=Homo sapiens GN=ATN1 PE=1 SV=3
Length = 1190
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 375 FLRHWNRGDYNSCCRTDLTFKPVPDSKLARKREERLRKQAEREREER 421
F +H +RG +NSC R+DL F P+ SKLA+KR + L ++ RE E+R
Sbjct: 766 FNKHLDRG-FNSCARSDLYFVPLEGSKLAKKRAD-LVEKVRREAEQR 810
>sp|C0H5F4|RBP2B_PLAF7 Reticulocyte binding protein 2 homolog b OS=Plasmodium falciparum
(isolate 3D7) GN=Rh2b PE=3 SV=1
Length = 3179
Score = 37.7 bits (86), Expect = 0.22, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 60/98 (61%), Gaps = 6/98 (6%)
Query: 401 KLARKREERLRKQAEREREEREKAQASMCNLLSRNP-ERIDTPRRRGGGGGGEEEEEEEG 459
+L R+++E+L+K+A +++E+ + Q L R ER+ +E+E
Sbjct: 2632 RLEREKQEQLKKEALKKQEQERQEQQQKEEALKRQEQERLQKEEELK-----RQEQERLE 2686
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
E++E+ +K++E +KK+++K++++ +E EE++K +++
Sbjct: 2687 REKQEQLQKEEELRKKEQEKQQQRNIQELEEQKKPEII 2724
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.126 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 205,829,081
Number of Sequences: 539616
Number of extensions: 10367653
Number of successful extensions: 410006
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4104
Number of HSP's successfully gapped in prelim test: 1870
Number of HSP's that attempted gapping in prelim test: 184855
Number of HSP's gapped (non-prelim): 104326
length of query: 514
length of database: 191,569,459
effective HSP length: 122
effective length of query: 392
effective length of database: 125,736,307
effective search space: 49288632344
effective search space used: 49288632344
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)