Query psy1024
Match_columns 514
No_of_seqs 123 out of 147
Neff 2.0
Searched_HMMs 46136
Date Fri Aug 16 21:27:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1024.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1024hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03154 Atrophin-1: Atrophin- 100.0 5.1E-33 1.1E-37 299.3 13.1 90 272-366 505-597 (982)
2 KOG2133|consensus 99.8 4E-21 8.6E-26 208.2 9.0 125 260-396 725-849 (1229)
3 KOG2653|consensus 99.7 4.4E-18 9.6E-23 172.6 1.7 65 378-451 417-481 (487)
4 COG0362 Gnd 6-phosphogluconate 99.7 4E-17 8.6E-22 166.7 3.2 65 375-449 409-473 (473)
5 PF03154 Atrophin-1: Atrophin- 99.6 9.8E-17 2.1E-21 174.6 3.0 42 371-413 550-591 (982)
6 PF00393 6PGD: 6-phosphoglucon 99.4 1.9E-13 4.2E-18 133.7 2.2 60 375-444 232-291 (291)
7 PRK09287 6-phosphogluconate de 99.2 1.5E-12 3.4E-17 132.3 0.7 62 375-446 397-458 (459)
8 TIGR00873 gnd 6-phosphoglucona 99.2 1.9E-12 4E-17 131.7 1.0 60 377-445 407-467 (467)
9 PTZ00142 6-phosphogluconate de 99.2 1.8E-12 4E-17 132.0 0.4 59 376-444 412-470 (470)
10 PLN02350 phosphogluconate dehy 99.1 5.8E-12 1.2E-16 129.6 -0.1 60 376-445 421-480 (493)
11 KOG2133|consensus 98.8 3.9E-09 8.3E-14 116.6 3.3 43 370-413 781-823 (1229)
12 TIGR00872 gnd_rel 6-phosphoglu 97.9 2.1E-06 4.6E-11 81.4 -0.8 47 376-431 250-297 (298)
13 PRK00247 putative inner membra 95.7 0.066 1.4E-06 56.1 10.1 46 394-444 276-321 (429)
14 PRK09599 6-phosphogluconate de 95.5 0.0023 5E-08 60.8 -1.2 46 377-431 253-299 (301)
15 KOG1144|consensus 94.3 0.077 1.7E-06 59.9 6.1 36 457-492 232-267 (1064)
16 PTZ00266 NIMA-related protein 94.0 0.81 1.8E-05 52.6 13.4 13 163-176 224-236 (1021)
17 KOG4364|consensus 93.6 0.38 8.3E-06 53.6 9.6 18 340-357 155-173 (811)
18 PF06658 DUF1168: Protein of u 93.4 0.28 6.1E-06 45.1 7.0 19 434-452 18-36 (142)
19 PF07946 DUF1682: Protein of u 92.7 0.18 3.9E-06 49.9 5.0 9 212-220 156-164 (321)
20 KOG2573|consensus 92.6 0.034 7.4E-07 58.9 -0.1 11 358-368 397-407 (498)
21 PRK12490 6-phosphogluconate de 89.9 0.065 1.4E-06 51.2 -1.0 42 379-430 254-297 (299)
22 KOG2572|consensus 89.5 0.14 3E-06 54.5 0.8 12 259-270 300-311 (498)
23 KOG2270|consensus 89.0 0.33 7.2E-06 52.0 3.2 18 115-132 141-158 (520)
24 KOG4364|consensus 88.5 0.76 1.6E-05 51.5 5.6 8 416-423 261-268 (811)
25 KOG2002|consensus 88.3 0.18 3.8E-06 57.7 0.7 11 441-451 892-902 (1018)
26 PF11600 CAF-1_p150: Chromatin 86.8 1.6 3.5E-05 41.1 6.0 9 504-512 179-187 (216)
27 PF05835 Synaphin: Synaphin pr 83.2 2.7 5.8E-05 38.8 5.5 43 459-501 35-77 (139)
28 KOG2412|consensus 82.3 14 0.00031 40.9 11.3 10 404-413 206-215 (591)
29 PF09428 DUF2011: Fungal prote 81.5 9 0.00019 34.8 8.1 36 473-508 92-127 (131)
30 KOG1924|consensus 81.1 6.4 0.00014 45.4 8.5 6 349-354 697-702 (1102)
31 KOG2573|consensus 81.1 0.44 9.5E-06 50.9 -0.3 8 274-281 323-330 (498)
32 KOG2357|consensus 80.5 2.8 6.1E-05 44.8 5.3 41 304-346 260-308 (440)
33 KOG2812|consensus 79.7 2.2 4.7E-05 45.2 4.1 9 336-344 120-128 (426)
34 KOG2270|consensus 79.6 0.91 2E-05 48.8 1.4 18 304-321 248-265 (520)
35 PF08229 SHR3_chaperone: ER me 79.5 1.1 2.3E-05 43.3 1.7 9 321-329 46-54 (196)
36 PF10278 Med19: Mediator of RN 79.0 0.43 9.4E-06 45.5 -1.1 18 391-408 76-93 (178)
37 PLN02381 valyl-tRNA synthetase 77.5 3.7 8.1E-05 47.2 5.5 32 457-488 12-43 (1066)
38 KOG1029|consensus 77.2 11 0.00025 43.5 8.9 20 335-354 214-233 (1118)
39 KOG0112|consensus 77.2 1 2.2E-05 51.6 0.9 34 458-491 742-775 (975)
40 KOG1924|consensus 73.4 7.6 0.00016 44.8 6.4 10 194-203 483-492 (1102)
41 KOG2412|consensus 69.7 11 0.00023 41.9 6.3 13 401-413 172-184 (591)
42 KOG0526|consensus 68.5 0.8 1.7E-05 50.2 -2.3 31 477-508 507-537 (615)
43 KOG4043|consensus 66.1 4.3 9.4E-05 39.5 2.3 13 340-352 81-94 (214)
44 PF11214 Med2: Mediator comple 65.0 6.2 0.00013 35.4 2.9 6 438-443 68-73 (105)
45 PF01086 Clathrin_lg_ch: Clath 64.6 11 0.00023 36.2 4.6 19 494-512 156-174 (225)
46 KOG1029|consensus 64.5 34 0.00074 39.9 9.0 23 259-281 112-134 (1118)
47 KOG2357|consensus 64.3 7.1 0.00015 41.9 3.6 20 485-504 413-432 (440)
48 PTZ00399 cysteinyl-tRNA-synthe 63.6 9.9 0.00022 41.8 4.7 9 211-219 235-243 (651)
49 COG4499 Predicted membrane pro 58.9 24 0.00051 38.0 6.3 16 224-239 230-245 (434)
50 KOG0345|consensus 54.8 32 0.0007 38.1 6.6 44 375-419 414-458 (567)
51 KOG3054|consensus 54.0 29 0.00064 35.7 5.8 25 399-424 100-124 (299)
52 KOG3878|consensus 53.5 40 0.00088 36.1 6.9 62 365-435 56-117 (469)
53 KOG0345|consensus 52.5 20 0.00043 39.6 4.6 6 428-433 443-448 (567)
54 KOG0526|consensus 51.4 3.1 6.8E-05 45.8 -1.4 17 196-212 294-310 (615)
55 COG4499 Predicted membrane pro 51.1 13 0.00028 39.9 3.0 12 362-373 303-314 (434)
56 KOG3794|consensus 50.9 19 0.0004 38.9 4.0 21 177-197 29-49 (453)
57 KOG2505|consensus 50.9 29 0.00063 38.5 5.6 22 151-172 247-268 (591)
58 KOG4043|consensus 50.4 10 0.00022 37.1 1.9 14 394-407 108-121 (214)
59 COG5163 NOP7 Protein required 48.7 22 0.00047 38.9 4.1 24 485-508 535-558 (591)
60 PF06658 DUF1168: Protein of u 48.2 67 0.0014 30.0 6.7 37 467-503 70-106 (142)
61 PTZ00399 cysteinyl-tRNA-synthe 47.7 37 0.00079 37.6 5.8 7 428-434 532-538 (651)
62 PF08524 rRNA_processing: rRNA 47.6 50 0.0011 30.3 5.8 16 419-434 36-51 (148)
63 KOG0996|consensus 47.2 48 0.001 39.8 6.9 113 309-448 644-757 (1293)
64 PF12923 RRP7: Ribosomal RNA-p 46.4 1.2E+02 0.0026 27.1 7.8 25 481-505 103-127 (131)
65 PF12569 NARP1: NMDA receptor- 46.0 28 0.0006 37.5 4.5 23 211-233 108-130 (517)
66 PF12569 NARP1: NMDA receptor- 45.5 28 0.0006 37.5 4.4 26 402-429 323-348 (517)
67 KOG2138|consensus 45.1 9.2 0.0002 43.6 0.8 22 42-63 231-252 (883)
68 KOG2505|consensus 44.7 39 0.00085 37.6 5.4 7 419-425 474-480 (591)
69 KOG1518|consensus 43.8 36 0.00078 35.8 4.7 60 392-453 60-121 (382)
70 PF11208 DUF2992: Protein of u 43.4 58 0.0013 29.8 5.5 9 341-349 26-34 (132)
71 KOG0163|consensus 41.1 48 0.001 38.8 5.5 28 170-197 470-500 (1259)
72 KOG2481|consensus 41.0 20 0.00043 39.7 2.6 18 244-263 202-219 (570)
73 PF08243 SPT2: SPT2 chromatin 40.6 48 0.001 29.6 4.5 8 425-432 46-53 (116)
74 TIGR00927 2A1904 K+-dependent 40.4 6.8 0.00015 45.8 -1.0 14 445-458 855-868 (1096)
75 PLN02316 synthase/transferase 40.2 86 0.0019 37.0 7.5 7 214-220 139-145 (1036)
76 KOG1951|consensus 39.9 90 0.002 28.6 6.1 26 486-511 76-104 (115)
77 KOG3654|consensus 39.8 1.6E+02 0.0034 33.3 8.9 43 381-425 368-412 (708)
78 KOG4055|consensus 39.6 59 0.0013 32.3 5.2 19 432-450 60-78 (213)
79 KOG2223|consensus 37.0 57 0.0012 36.1 5.1 7 399-405 195-201 (586)
80 PLN02967 kinase 34.6 8.2 0.00018 42.2 -1.5 19 484-502 127-145 (581)
81 KOG2809|consensus 34.4 26 0.00056 36.5 2.1 6 309-314 74-79 (326)
82 KOG2002|consensus 34.2 82 0.0018 37.3 6.0 12 427-438 790-801 (1018)
83 PF12757 DUF3812: Protein of u 33.8 1.7E+02 0.0038 26.2 6.8 13 429-441 51-63 (126)
84 KOG0163|consensus 32.2 88 0.0019 36.8 5.8 8 339-346 752-759 (1259)
85 PF12757 DUF3812: Protein of u 31.3 88 0.0019 28.0 4.6 24 470-493 101-124 (126)
86 KOG2967|consensus 30.6 1.1E+02 0.0024 31.9 5.7 7 489-495 57-63 (314)
87 PLN02705 beta-amylase 30.1 51 0.0011 37.3 3.5 10 442-451 64-73 (681)
88 PLN02316 synthase/transferase 29.8 93 0.002 36.7 5.6 13 384-396 208-220 (1036)
89 KOG2963|consensus 28.7 1.2E+02 0.0026 32.7 5.7 7 193-199 59-65 (405)
90 KOG2507|consensus 28.2 46 0.001 36.4 2.8 7 422-428 122-128 (506)
91 KOG3228|consensus 27.5 4.9E+02 0.011 26.4 9.3 21 403-427 52-72 (226)
92 PF15002 ERK-JNK_inhib: ERK an 26.1 70 0.0015 31.3 3.3 14 427-440 153-166 (207)
93 PF09428 DUF2011: Fungal prote 25.9 1.4E+02 0.003 27.3 5.0 8 435-442 60-67 (131)
94 KOG2409|consensus 25.8 98 0.0021 35.0 4.7 17 193-209 34-50 (647)
95 PF04889 Cwf_Cwc_15: Cwf15/Cwc 25.6 1.9E+02 0.0042 28.7 6.3 19 247-265 1-19 (244)
96 PRK05330 coproporphyrinogen II 25.4 49 0.0011 34.2 2.2 35 417-452 14-48 (300)
97 PF05236 TAF4: Transcription i 25.1 24 0.00052 34.1 0.0 10 358-367 79-88 (264)
98 PLN03086 PRLI-interacting fact 24.7 1.6E+02 0.0035 32.8 6.0 33 459-491 11-43 (567)
99 KOG2507|consensus 24.6 1E+02 0.0022 34.0 4.4 18 304-321 163-180 (506)
100 KOG4246|consensus 24.0 76 0.0016 37.5 3.6 21 127-147 256-276 (1194)
101 PF13300 DUF4078: Domain of un 23.1 2.8E+02 0.0061 24.1 6.0 6 430-435 12-17 (88)
102 PF10147 CR6_interact: Growth 22.5 1.4E+02 0.003 29.7 4.6 9 417-425 162-170 (217)
103 KOG0388|consensus 22.4 1.3E+02 0.0028 35.5 4.9 12 325-336 309-320 (1185)
104 KOG2223|consensus 22.3 1.6E+02 0.0036 32.7 5.5 6 421-426 196-201 (586)
105 KOG2809|consensus 22.0 64 0.0014 33.8 2.3 7 422-428 165-171 (326)
106 KOG4156|consensus 21.4 1.1E+02 0.0024 35.5 4.1 12 301-312 499-510 (1329)
107 KOG2893|consensus 21.1 3.1E+02 0.0068 28.6 6.8 11 242-252 150-160 (341)
108 KOG4848|consensus 21.1 1.1E+02 0.0025 30.6 3.7 24 473-496 196-219 (225)
109 PF07767 Nop53: Nop53 (60S rib 20.4 50 0.0011 33.5 1.2 16 356-371 194-209 (387)
110 PF01218 Coprogen_oxidas: Copr 20.1 21 0.00046 36.6 -1.5 26 428-453 17-42 (296)
No 1
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=100.00 E-value=5.1e-33 Score=299.33 Aligned_cols=90 Identities=56% Similarity=0.873 Sum_probs=83.5
Q ss_pred cccCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccchhhhhhhcccCCCCcccccccccccCCChH
Q psy1024 272 DSVKHEALTISGDEGSMQPEEEEIPSPPHHIPRGPSPEPKIEDSECHRSQSAIFLRHWNRGDYNSCCRTDLTFKPVPDSK 351 (514)
Q Consensus 272 ~~~p~~~~~~~~~E~~~e~ee~esp~P~~~~~RsPSPEPkvvD~~~H~SQSArF~kHldRG~yNSC~RTDL~F~Pl~~SK 351 (514)
..+++.+++||+ |+.||.||+|+|+|+ +|+|||||||||++||+||||||+|||||| ||||+|||||||||+|||
T Consensus 505 ~~~~~p~~qIKe-Ep~eE~EepEsp~pp---pRsPSPEPkvvDtp~HaSQSArF~kHldRG-~NSCaRTDL~F~Pl~gSK 579 (982)
T PF03154_consen 505 SSPPLPPIQIKE-EPPEEEEEPESPPPP---PRSPSPEPKVVDTPSHASQSARFNKHLDRG-YNSCARTDLYFVPLPGSK 579 (982)
T ss_pred CCCCCCcccccC-CCCccccCCCCCCCC---CCCCCCCCccccchhhhhHHHHHHHHhhcc-cccccccceeeeecCccH
Confidence 446788899988 888999999999887 799999999999999999999999999999 899999999999999999
Q ss_pred HHHHhHHH---HHHHHHh
Q psy1024 352 LARKREER---LRKQAEL 366 (514)
Q Consensus 352 LArKree~---~Rk~ae~ 366 (514)
|||||+|+ .||+||+
T Consensus 580 LAkKRee~~ek~RReaEq 597 (982)
T PF03154_consen 580 LAKKREERVEKARREAEQ 597 (982)
T ss_pred HhhhhHHHHHHHHhhhhc
Confidence 99999986 5788887
No 2
>KOG2133|consensus
Probab=99.84 E-value=4e-21 Score=208.23 Aligned_cols=125 Identities=37% Similarity=0.495 Sum_probs=108.3
Q ss_pred CCCCCCCCCCCCcccCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccchhhhhhhcccCCCCcccc
Q psy1024 260 GGLPHGLGMPGVDSVKHEALTISGDEGSMQPEEEEIPSPPHHIPRGPSPEPKIEDSECHRSQSAIFLRHWNRGDYNSCCR 339 (514)
Q Consensus 260 GGlp~lpgMPg~~~~p~~~~~~~~~E~~~e~ee~esp~P~~~~~RsPSPEPkvvD~~~H~SQSArF~kHldRG~yNSC~R 339 (514)
|+||.+++-+.-.+||+..++|++ |+.+|.|.+++|+|| .|+|||||+|||+++|+||||||++|+||| ||||+|
T Consensus 725 ~~~P~~~ga~~s~p~pl~a~qik~-~~~~e~~~~tspvpP---~~sps~e~~V~dtPShAs~Sa~~~~h~d~~-~nS~~r 799 (1229)
T KOG2133|consen 725 DPMPPLNGAKASGPVPLIALQIKG-EIKKENEVPTSPVPP---TRSPSPEPEVVDTPSHASQSARFRKHLDRG-TNSCAR 799 (1229)
T ss_pred CCCCCCcccccCCCCcchhhhhhc-chhhhcCCCCCCCCC---CCCCCCCCcccCCchHHHHHHHHHHHhccc-cccccc
Confidence 344444455555668999999998 899999999999998 799999999999999999999999999999 999999
Q ss_pred cccccccCCChHHHHHhHHHHHHHHHhhhhhchhhhhhhhhcCCCCccccccccccc
Q psy1024 340 TDLTFKPVPDSKLARKREERLRKQAELKIKLFCPVFLRHWNRGDYNSCCRTDLTFKP 396 (514)
Q Consensus 340 TDL~F~Pl~~SKLArKree~~Rk~ae~~i~l~sarF~KHldRG~pNSC~RTDL~Fyd 396 (514)
+||||+||.++||+++|++.+.+. ..+-|.+...|-.--=|.++++.|..
T Consensus 800 sd~~~~Pl~p~~~akl~~~~~~ka-------k~aa~~ra~er~~~~r~re~e~~~e~ 849 (1229)
T KOG2133|consen 800 SDLYFEPLSPSKLAKLRSNVEEKA-------KRAAEQRARERSERERERETELERER 849 (1229)
T ss_pred cccccCCCCcccccccccchHHHH-------HHHHHHHHHHhhhhhhhhhhcccccc
Confidence 999999999999999999776544 35667777887777789999999887
No 3
>KOG2653|consensus
Probab=99.69 E-value=4.4e-18 Score=172.63 Aligned_cols=65 Identities=25% Similarity=0.223 Sum_probs=61.7
Q ss_pred hhhcCCCCcccccccccccCCChhHHHHhHHhhHHhHHHHHHHHHHHHHhhhhhhcCCCceeeCCCCCCCCCCC
Q psy1024 378 HWNRGDYNSCCRTDLTFKPVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGG 451 (514)
Q Consensus 378 HldRG~pNSC~RTDL~Fydl~~SKLAgkR~ErLpanaEleQaqRDyfgAhtyelLsrpgefihT~WtRGGGggg 451 (514)
.+..|+|+||++|.|.||| +||.|+||+| |+||||||||||||++|..+|.+||||||+.||.-.
T Consensus 417 a~~~gIptP~~st~Lafyd-------gyr~e~lpaN--llQAqRDYFGAHtye~l~~~~~~~HtnWtg~gg~~s 481 (487)
T KOG2653|consen 417 AVEAGIPTPAFSTALAFYD-------GYRSERLPAN--LLQAQRDYFGAHTYELLGEPGKAIHTNWTGHGGNVS 481 (487)
T ss_pred HHhcCCCChhHHHHHHHHh-------hhhhhcCcHH--HHHHHHHhhccceeeecCCCcceeeeeecccCCccc
Confidence 4568999999999999999 9999999999 999999999999999999999999999999998753
No 4
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=4e-17 Score=166.72 Aligned_cols=65 Identities=17% Similarity=0.152 Sum_probs=60.6
Q ss_pred hhhhhhcCCCCcccccccccccCCChhHHHHhHHhhHHhHHHHHHHHHHHHHhhhhhhcCCCceeeCCCCCCCCC
Q psy1024 375 FLRHWNRGDYNSCCRTDLTFKPVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGG 449 (514)
Q Consensus 375 F~KHldRG~pNSC~RTDL~Fydl~~SKLAgkR~ErLpanaEleQaqRDyfgAhtyelLsrpgefihT~WtRGGGg 449 (514)
-...+..|+|+||++++|.||| +||.++||+| |+||||||||||||+++|++| ||||+|+++||+
T Consensus 409 V~~a~~~giP~P~~ssalsy~D-------syr~~~lpaN--LiQAQRDyFGAHtyeR~D~~~-~fHt~W~~~~~~ 473 (473)
T COG0362 409 VAYAVEAGIPVPAFSSALSYYD-------SYRTARLPAN--LIQAQRDYFGAHTYERTDKEG-FFHTNWTGGGGN 473 (473)
T ss_pred HHHHHhcCCCchHHHHHHHHHH-------HhhhccccHH--HHHHHHHhhcccceeecCCCC-ccccCccCCCCC
Confidence 3456789999999999999999 9999999999 999999999999999999998 999999988764
No 5
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=99.63 E-value=9.8e-17 Score=174.55 Aligned_cols=42 Identities=60% Similarity=0.975 Sum_probs=39.9
Q ss_pred chhhhhhhhhcCCCCcccccccccccCCChhHHHHhHHhhHHh
Q psy1024 371 FCPVFLRHWNRGDYNSCCRTDLTFKPVPDSKLARKREERLRKQ 413 (514)
Q Consensus 371 ~sarF~KHldRG~pNSC~RTDL~Fydl~~SKLAgkR~ErLpan 413 (514)
+||||||||||| ||||+||||||+||+|||||+||+|++++.
T Consensus 550 QSArF~kHldRG-~NSCaRTDL~F~Pl~gSKLAkKRee~~ek~ 591 (982)
T PF03154_consen 550 QSARFNKHLDRG-YNSCARTDLYFVPLPGSKLAKKREERVEKA 591 (982)
T ss_pred HHHHHHHHhhcc-cccccccceeeeecCccHHhhhhHHHHHHH
Confidence 499999999999 999999999999999999999999988765
No 6
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=99.36 E-value=1.9e-13 Score=133.71 Aligned_cols=60 Identities=15% Similarity=0.106 Sum_probs=47.9
Q ss_pred hhhhhhcCCCCcccccccccccCCChhHHHHhHHhhHHhHHHHHHHHHHHHHhhhhhhcCCCceeeCCCC
Q psy1024 375 FLRHWNRGDYNSCCRTDLTFKPVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRR 444 (514)
Q Consensus 375 F~KHldRG~pNSC~RTDL~Fydl~~SKLAgkR~ErLpanaEleQaqRDyfgAhtyelLsrpgefihT~Wt 444 (514)
....++.|+|.||++++|.||| .+|+++||+| ++||||||||||||+++|++|. +||+|+
T Consensus 232 V~~ai~~gipvPalsaaL~Y~d-------s~~~~~lpan--lIQAqRDyFGaHtyeR~D~~g~-fH~~W~ 291 (291)
T PF00393_consen 232 VSLAIEAGIPVPALSAALSYFD-------SYRSERLPAN--LIQAQRDYFGAHTYERIDKEGS-FHTEWS 291 (291)
T ss_dssp HHHHHHHT---HHHHHHHHHHH-------HHTTSSHTHH--HHHHHHHHHH---EEBSSSSSE-E---TT
T ss_pred HHHHHHcCCChHHHHHHHHHHH-------hcccCCCcHH--HHHHHHHHhcCcceeecCCCCC-cCCCCC
Confidence 3457899999999999999999 9999999999 9999999999999999999998 899996
No 7
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.23 E-value=1.5e-12 Score=132.33 Aligned_cols=62 Identities=13% Similarity=0.058 Sum_probs=57.8
Q ss_pred hhhhhhcCCCCcccccccccccCCChhHHHHhHHhhHHhHHHHHHHHHHHHHhhhhhhcCCCceeeCCCCCC
Q psy1024 375 FLRHWNRGDYNSCCRTDLTFKPVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRG 446 (514)
Q Consensus 375 F~KHldRG~pNSC~RTDL~Fydl~~SKLAgkR~ErLpanaEleQaqRDyfgAhtyelLsrpgefihT~WtRG 446 (514)
....++.|+|.||++++|.||+ .||++++|+| ++||||||||||+|+++|++| ++||+|+..
T Consensus 397 V~~a~~~gip~P~ls~aL~y~d-------~~~~~~~~an--liqaqRd~FGaH~~~r~d~~g-~~h~~w~~~ 458 (459)
T PRK09287 397 VALAVQAGIPVPAFSSALSYYD-------SYRTARLPAN--LIQAQRDYFGAHTYERTDKEG-FFHTEWSED 458 (459)
T ss_pred HHHHHHcCCCHHHHHHHHHHHH-------HhhcCCccHH--HHHHHHhHhCCCCcccCCCCC-CCcccCCCC
Confidence 3467889999999999999999 9999999999 999999999999999999998 899999843
No 8
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.23 E-value=1.9e-12 Score=131.68 Aligned_cols=60 Identities=15% Similarity=0.045 Sum_probs=56.5
Q ss_pred hhhhcCCCCcccccccccccCCChhHHHHhHHhhHHhHHHHHHHHHHHHHhhhhhhcCCCc-eeeCCCCC
Q psy1024 377 RHWNRGDYNSCCRTDLTFKPVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPE-RIDTPRRR 445 (514)
Q Consensus 377 KHldRG~pNSC~RTDL~Fydl~~SKLAgkR~ErLpanaEleQaqRDyfgAhtyelLsrpge-fihT~WtR 445 (514)
..++.|+|.|+++++|.||+ .||++++|+| ++||||||||+|+|+++|++|+ ++||+|++
T Consensus 407 ~a~~~gip~P~ls~aL~y~~-------~~~s~~~~~n--liqaqRd~FGaH~~~r~d~~g~~~~h~~w~~ 467 (467)
T TIGR00873 407 LAIEYGIPVPAFSAALSFYD-------GYRTARLPAN--LLQAQRDYFGAHTYERTDKPRGEFFHTNWTG 467 (467)
T ss_pred HHHHcCCCHHHHHHHHHHHH-------HhhcCcccHH--HHHHHHHHhccccccccCCCCCCccCCCCCC
Confidence 46788999999999999999 9999999999 9999999999999999999984 99999974
No 9
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.22 E-value=1.8e-12 Score=131.96 Aligned_cols=59 Identities=15% Similarity=0.097 Sum_probs=55.7
Q ss_pred hhhhhcCCCCcccccccccccCCChhHHHHhHHhhHHhHHHHHHHHHHHHHhhhhhhcCCCceeeCCCC
Q psy1024 376 LRHWNRGDYNSCCRTDLTFKPVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRR 444 (514)
Q Consensus 376 ~KHldRG~pNSC~RTDL~Fydl~~SKLAgkR~ErLpanaEleQaqRDyfgAhtyelLsrpgefihT~Wt 444 (514)
...++.|+|.||++++|.||+ .||++.+|+| ++||||||||||+|+++|++| ++||+|+
T Consensus 412 ~~a~~~gip~P~~s~aL~y~~-------s~~~~~~~an--liqaqRd~FGaH~~~r~d~~g-~~h~~w~ 470 (470)
T PTZ00142 412 SMATKNGIPTPAFSASLAYYQ-------MYRSQNLPAN--LVQAQRDYFGAHTYKRLDRPG-AFHTNWE 470 (470)
T ss_pred HHHHHcCCCHHHHHHHHHHHH-------HhhcCCccHH--HHHHHHHHhCCCCcccCCCCC-CCCCCCC
Confidence 356889999999999999999 9999999999 999999999999999999998 6899995
No 10
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.15 E-value=5.8e-12 Score=129.60 Aligned_cols=60 Identities=17% Similarity=0.125 Sum_probs=56.3
Q ss_pred hhhhhcCCCCcccccccccccCCChhHHHHhHHhhHHhHHHHHHHHHHHHHhhhhhhcCCCceeeCCCCC
Q psy1024 376 LRHWNRGDYNSCCRTDLTFKPVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRR 445 (514)
Q Consensus 376 ~KHldRG~pNSC~RTDL~Fydl~~SKLAgkR~ErLpanaEleQaqRDyfgAhtyelLsrpgefihT~WtR 445 (514)
...++.|+|.||+++.|.||+ .||.+.+|+| ++||||||||||+|+++|++| ++||+|+.
T Consensus 421 ~~a~~~gip~P~ls~aL~y~~-------s~~~~~~~~n--liqaqRd~FGaH~~~r~d~~g-~~h~~w~~ 480 (493)
T PLN02350 421 SLAINAGISTPGMSASLAYFD-------TYRRARLPAN--LVQAQRDYFGAHTYERVDRPG-SFHTEWTK 480 (493)
T ss_pred HHHHHcCCCHHHHHHHHHHHH-------hhccCCccHH--HHHHHHHHhCCCceeeCCCCC-CCcCCchh
Confidence 457889999999999999999 9999999999 999999999999999999998 67999973
No 11
>KOG2133|consensus
Probab=98.75 E-value=3.9e-09 Score=116.56 Aligned_cols=43 Identities=42% Similarity=0.645 Sum_probs=40.1
Q ss_pred hchhhhhhhhhcCCCCcccccccccccCCChhHHHHhHHhhHHh
Q psy1024 370 LFCPVFLRHWNRGDYNSCCRTDLTFKPVPDSKLARKREERLRKQ 413 (514)
Q Consensus 370 l~sarF~KHldRG~pNSC~RTDL~Fydl~~SKLAgkR~ErLpan 413 (514)
.++|+|++|+|+| ||||+|+||||+||.++||+++|.....+.
T Consensus 781 s~Sa~~~~h~d~~-~nS~~rsd~~~~Pl~p~~~akl~~~~~~ka 823 (1229)
T KOG2133|consen 781 SQSARFRKHLDRG-TNSCARSDLYFEPLSPSKLAKLRSNVEEKA 823 (1229)
T ss_pred HHHHHHHHHhccc-cccccccccccCCCCcccccccccchHHHH
Confidence 4699999999999 999999999999999999999999877665
No 12
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.88 E-value=2.1e-06 Score=81.42 Aligned_cols=47 Identities=11% Similarity=0.003 Sum_probs=42.9
Q ss_pred hhhhhcCCCCcccccccccccCCChhHHHHhHH-hhHHhHHHHHHHHHHHHHhhhhh
Q psy1024 376 LRHWNRGDYNSCCRTDLTFKPVPDSKLARKREE-RLRKQAEREREEREKAQASMCNL 431 (514)
Q Consensus 376 ~KHldRG~pNSC~RTDL~Fydl~~SKLAgkR~E-rLpanaEleQaqRDyfgAhtyel 431 (514)
...++.|++.|++.++|++++ .+|.. .+++| ++|+||||||+|+|+.
T Consensus 250 ~~a~~~g~p~P~~~~al~~~~-------~~~~~~~~~~~--~~~~~r~~fg~h~~~~ 297 (298)
T TIGR00872 250 IAAIDLGVPAPVIATSLQSRF-------ASRDLDDFANK--VLAALRKEFGGHAEKK 297 (298)
T ss_pred HHHHHhCCCHHHHHHHHHHHH-------HhCCCCCcHHH--HHHHHHHhhCCCCcCC
Confidence 467899999999999999998 88887 89999 9999999999999983
No 13
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=95.75 E-value=0.066 Score=56.14 Aligned_cols=46 Identities=24% Similarity=0.320 Sum_probs=28.9
Q ss_pred cccCCChhHHHHhHHhhHHhHHHHHHHHHHHHHhhhhhhcCCCceeeCCCC
Q psy1024 394 FKPVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRR 444 (514)
Q Consensus 394 Fydl~~SKLAgkR~ErLpanaEleQaqRDyfgAhtyelLsrpgefihT~Wt 444 (514)
+||++. .+-..+.+...+-+|++++ ..++...+..+...-+=+||+
T Consensus 276 ~~P~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~~ 321 (429)
T PRK00247 276 KYPLTD-EFKEHHAEQRAQYREKQKE----KKAFLWTLRRNRLRMIITPWR 321 (429)
T ss_pred hcCCCc-chHHHHHHHHHHHHHHHHH----HHHHHHHHHhccccccCCccc
Confidence 566666 4445666666665555555 345556666667777889994
No 14
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.55 E-value=0.0023 Score=60.83 Aligned_cols=46 Identities=7% Similarity=-0.027 Sum_probs=39.8
Q ss_pred hhhhcCCCCccccccccc-ccCCChhHHHHhHHhhHHhHHHHHHHHHHHHHhhhhh
Q psy1024 377 RHWNRGDYNSCCRTDLTF-KPVPDSKLARKREERLRKQAEREREEREKAQASMCNL 431 (514)
Q Consensus 377 KHldRG~pNSC~RTDL~F-ydl~~SKLAgkR~ErLpanaEleQaqRDyfgAhtyel 431 (514)
...+.|++.|.+.+++++ +. ..+...++.+ .+|++|||||+|+|++
T Consensus 253 ~A~~~~~~~P~~~~a~~~~~~-------~~~~~~~~~~--~~~a~~~~fg~h~~~~ 299 (301)
T PRK09599 253 EAIDLAVPAPVIAAALFMRFR-------SRQEDSFADK--VVAALRNGFGGHAVKK 299 (301)
T ss_pred HHHHcCCCHHHHHHHHHHHHH-------hccCCCcHHH--HHHHHHHhcCCCCccC
Confidence 446889999999997775 66 7788889999 9999999999999996
No 15
>KOG1144|consensus
Probab=94.30 E-value=0.077 Score=59.90 Aligned_cols=36 Identities=25% Similarity=0.556 Sum_probs=14.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy1024 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492 (514)
Q Consensus 457 eekeEeee~KeKkeEKkKkkKkkKKKKeeKkekeeE 492 (514)
+++.|++|+.++++|.+++.+.+++-++|.+++.+|
T Consensus 232 ~qkreeEE~~r~eeEEer~~ee~E~~~eEak~kkKe 267 (1064)
T KOG1144|consen 232 RQKREEEERLRREEEEERRREEEEAQEEEAKEKKKE 267 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333333333333
No 16
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=93.99 E-value=0.81 Score=52.64 Aligned_cols=13 Identities=38% Similarity=0.915 Sum_probs=7.5
Q ss_pred CCCCCCCchhhhHH
Q psy1024 163 PDCHSLPACLCYQL 176 (514)
Q Consensus 163 ~~~~slp~~~~~~~ 176 (514)
.|.-|| .|++|.|
T Consensus 224 SDVWSL-G~ILYEL 236 (1021)
T PTZ00266 224 SDMWAL-GCIIYEL 236 (1021)
T ss_pred hHHHHH-HHHHHHH
Confidence 466666 5555554
No 17
>KOG4364|consensus
Probab=93.60 E-value=0.38 Score=53.65 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=10.2
Q ss_pred cccccccCCCh-HHHHHhH
Q psy1024 340 TDLTFKPVPDS-KLARKRE 357 (514)
Q Consensus 340 TDL~F~Pl~~S-KLArKre 357 (514)
.|+.|+|...- -|+.++.
T Consensus 155 ~~~~~~~~s~~vVl~~~~~ 173 (811)
T KOG4364|consen 155 RDLKIMPSSVRVVLKLRRT 173 (811)
T ss_pred cCcccCCCcchhHHhhhhc
Confidence 47888886543 3444433
No 18
>PF06658 DUF1168: Protein of unknown function (DUF1168); InterPro: IPR009548 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=93.40 E-value=0.28 Score=45.12 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=15.7
Q ss_pred CCCceeeCCCCCCCCCCCC
Q psy1024 434 RNPERIDTPRRRGGGGGGE 452 (514)
Q Consensus 434 rpgefihT~WtRGGGggge 452 (514)
-+++||..-|+...|.|..
T Consensus 18 ~~pe~V~NV~GSSAGAGSG 36 (142)
T PF06658_consen 18 PPPEFVRNVQGSSAGAGSG 36 (142)
T ss_pred CCCeeeccccccccccCcc
Confidence 5789999999988887754
No 19
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=92.65 E-value=0.18 Score=49.91 Aligned_cols=9 Identities=33% Similarity=0.257 Sum_probs=4.0
Q ss_pred CCCCCccch
Q psy1024 212 RPFDPHWLE 220 (514)
Q Consensus 212 ~~~~ph~~~ 220 (514)
.+-.|-|+-
T Consensus 156 ~~~Lp~~~~ 164 (321)
T PF07946_consen 156 SPKLPESLV 164 (321)
T ss_pred ccCCCcceE
Confidence 344454443
No 20
>KOG2573|consensus
Probab=92.56 E-value=0.034 Score=58.87 Aligned_cols=11 Identities=45% Similarity=0.767 Sum_probs=6.0
Q ss_pred HHHHHHHHhhh
Q psy1024 358 ERLRKQAELKI 368 (514)
Q Consensus 358 e~~Rk~ae~~i 368 (514)
+.+|+|+|..+
T Consensus 397 e~Lr~qVEeRL 407 (498)
T KOG2573|consen 397 EKLREQVEERL 407 (498)
T ss_pred HHHHHHHHHHH
Confidence 34566666554
No 21
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=89.95 E-value=0.065 Score=51.22 Aligned_cols=42 Identities=7% Similarity=-0.094 Sum_probs=31.3
Q ss_pred hhcCCCCccccccc-ccccCCChhHHHHhHHhhH-HhHHHHHHHHHHHHHhhhh
Q psy1024 379 WNRGDYNSCCRTDL-TFKPVPDSKLARKREERLR-KQAEREREEREKAQASMCN 430 (514)
Q Consensus 379 ldRG~pNSC~RTDL-~Fydl~~SKLAgkR~ErLp-anaEleQaqRDyfgAhtye 430 (514)
.+.|++.|-+.+.+ +++ ....+.++ .+ .+|++|||||||+|+
T Consensus 254 ~~~g~~~P~~~~a~~~~~--------~~~~~~~~~~~--~~~a~~~~f~~~~~~ 297 (299)
T PRK12490 254 IELAVAAPVIAASLFMRF--------ASQEDDSFHMK--VVSALRNQFGGHAVK 297 (299)
T ss_pred HHcCCCHHHHHHHHHHHH--------HhCccCChHHH--HHHHHHHhhCCCCCC
Confidence 35677777777665 322 34566777 77 999999999999997
No 22
>KOG2572|consensus
Probab=89.49 E-value=0.14 Score=54.52 Aligned_cols=12 Identities=25% Similarity=0.235 Sum_probs=7.2
Q ss_pred CCCCCCCCCCCC
Q psy1024 259 MGGLPHGLGMPG 270 (514)
Q Consensus 259 MGGlp~lpgMPg 270 (514)
+|-+=|+-.+|+
T Consensus 300 aGSL~nLaK~p~ 311 (498)
T KOG2572|consen 300 AGSLFNLAKAPA 311 (498)
T ss_pred hhhHHHHhhCCh
Confidence 555666666665
No 23
>KOG2270|consensus
Probab=89.03 E-value=0.33 Score=52.02 Aligned_cols=18 Identities=22% Similarity=0.172 Sum_probs=10.9
Q ss_pred CCCCcccccCCCcCCCCC
Q psy1024 115 ASPPASAISGSKSRGIGD 132 (514)
Q Consensus 115 ~~~~~~~~~~~~~~g~g~ 132 (514)
......-|-|.-++|--.
T Consensus 141 ~RG~i~~inGCiSTGKEA 158 (520)
T KOG2270|consen 141 NRGVIVEINGCISTGKEA 158 (520)
T ss_pred hcCeeeecccccccCccc
Confidence 344556677777777543
No 24
>KOG4364|consensus
Probab=88.49 E-value=0.76 Score=51.45 Aligned_cols=8 Identities=63% Similarity=1.116 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q psy1024 416 REREEREK 423 (514)
Q Consensus 416 leQaqRDy 423 (514)
++|.+|++
T Consensus 261 K~R~erEr 268 (811)
T KOG4364|consen 261 KERKERER 268 (811)
T ss_pred HHHHHHHH
Confidence 44444444
No 25
>KOG2002|consensus
Probab=88.30 E-value=0.18 Score=57.70 Aligned_cols=11 Identities=36% Similarity=1.008 Sum_probs=7.0
Q ss_pred CCCCCCCCCCC
Q psy1024 441 TPRRRGGGGGG 451 (514)
Q Consensus 441 T~WtRGGGggg 451 (514)
--|.+|||||.
T Consensus 892 e~~k~s~g~~~ 902 (1018)
T KOG2002|consen 892 EEKKKSGGGGR 902 (1018)
T ss_pred hhhhhcCCCCC
Confidence 34667777765
No 26
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=86.82 E-value=1.6 Score=41.07 Aligned_cols=9 Identities=22% Similarity=0.479 Sum_probs=4.4
Q ss_pred hcchhhhhh
Q psy1024 504 RRRPKEFLH 512 (514)
Q Consensus 504 r~~~~~~~~ 512 (514)
.-++-.|+-
T Consensus 179 q~~~~~FF~ 187 (216)
T PF11600_consen 179 QARITSFFK 187 (216)
T ss_pred HHHHHHHhC
Confidence 334555553
No 27
>PF05835 Synaphin: Synaphin protein; InterPro: IPR008849 This family consists of several eukaryotic synaphin 1 and 2 proteins. Synaphin/complexin is a cytosolic protein that preferentially binds to syntaxin within the SNARE complex. Synaphin promotes SNAREs to form precomplexes that oligomerise into higher order structures. A peptide from the central, syntaxin binding domain of synaphin competitively inhibits these two proteins from interacting and prevents SNARE complexes from oligomerising. It is thought that oligomerisation of SNARE complexes into a higher order structure creates a SNARE scaffold for efficient, regulated fusion of synaptic vesicles []. Synaphin promotes neuronal exocytosis by promoting interaction between the complementary syntaxin and synaptobrevin transmembrane regions that reside in opposing membranes prior to fusion [].; GO: 0019905 syntaxin binding, 0006836 neurotransmitter transport; PDB: 3RL0_m 3RK3_E 1L4A_E 1KIL_E.
Probab=83.18 E-value=2.7 Score=38.78 Aligned_cols=43 Identities=28% Similarity=0.346 Sum_probs=19.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy1024 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMK 501 (514)
Q Consensus 459 keEeee~KeKkeEKkKkkKkkKKKKeeKkekeeEkKk~krk~K 501 (514)
+.++.++...+++++++.+=.+++.++++-|..-|.|-.-++|
T Consensus 35 e~~E~qeal~eeee~Rk~k~~k~eaERe~mRq~IRdKY~l~k~ 77 (139)
T PF05835_consen 35 EEEEYQEALREEEEERKAKHAKMEAEREKMRQHIRDKYGLKKK 77 (139)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3334444444444555555555555555555555554444443
No 28
>KOG2412|consensus
Probab=82.29 E-value=14 Score=40.89 Aligned_cols=10 Identities=30% Similarity=0.846 Sum_probs=4.5
Q ss_pred HHhHHhhHHh
Q psy1024 404 RKREERLRKQ 413 (514)
Q Consensus 404 gkR~ErLpan 413 (514)
..|++-.+.+
T Consensus 206 ~q~~eqi~~~ 215 (591)
T KOG2412|consen 206 KQRKEQIRER 215 (591)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 29
>PF09428 DUF2011: Fungal protein of unknown function (DUF2011); InterPro: IPR018555 This is a family of fungal proteins whose function is unknown.
Probab=81.48 E-value=9 Score=34.80 Aligned_cols=36 Identities=42% Similarity=0.583 Sum_probs=22.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcchh
Q psy1024 473 KKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPK 508 (514)
Q Consensus 473 kKkkKkkKKKKeeKkekeeEkKk~krk~Kk~r~~~~ 508 (514)
|+.--..+.++.++++.+.|++.++.++||.+|+-+
T Consensus 92 K~Ria~r~~~~r~kE~~~~eKk~rknr~KK~kkR~~ 127 (131)
T PF09428_consen 92 KRRIAKRKRREREKEEAEKEKKKRKNRKKKFKKRGK 127 (131)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333333444555666677777777777777777654
No 30
>KOG1924|consensus
Probab=81.14 E-value=6.4 Score=45.40 Aligned_cols=6 Identities=67% Similarity=0.706 Sum_probs=3.2
Q ss_pred ChHHHH
Q psy1024 349 DSKLAR 354 (514)
Q Consensus 349 ~SKLAr 354 (514)
|||+|.
T Consensus 697 DsKtaQ 702 (1102)
T KOG1924|consen 697 DSKTAQ 702 (1102)
T ss_pred chHHHH
Confidence 555554
No 31
>KOG2573|consensus
Probab=81.08 E-value=0.44 Score=50.89 Aligned_cols=8 Identities=13% Similarity=0.173 Sum_probs=3.8
Q ss_pred cCCccccc
Q psy1024 274 VKHEALTI 281 (514)
Q Consensus 274 ~p~~~~~~ 281 (514)
+|-+++||
T Consensus 323 ~PASTvQI 330 (498)
T KOG2573|consen 323 YPASTVQI 330 (498)
T ss_pred CcchHHHH
Confidence 33445555
No 32
>KOG2357|consensus
Probab=80.52 E-value=2.8 Score=44.77 Aligned_cols=41 Identities=27% Similarity=0.211 Sum_probs=20.3
Q ss_pred CCCCCCCccccccccccchhhhh--------hhcccCCCCccccccccccc
Q psy1024 304 RGPSPEPKIEDSECHRSQSAIFL--------RHWNRGDYNSCCRTDLTFKP 346 (514)
Q Consensus 304 RsPSPEPkvvD~~~H~SQSArF~--------kHldRG~yNSC~RTDL~F~P 346 (514)
|---|+-+++=.+.---..++|- ++.+-..|- --||..-.|
T Consensus 260 ~~~lP~~~~vmSE~nEvs~~i~~~~v~~~l~k~~~~ieyi--h~SDQ~sgP 308 (440)
T KOG2357|consen 260 RYNLPESFVVMSESNEVSGAIFEDKVVSQLNKYGDNIEYI--HFSDQFSGP 308 (440)
T ss_pred ccCCCcceeeeecchhhhhhhhchHHHHHHHHHHhhhheE--EeecCCCCC
Confidence 44445555554443333334421 444444443 347887777
No 33
>KOG2812|consensus
Probab=79.72 E-value=2.2 Score=45.21 Aligned_cols=9 Identities=11% Similarity=0.021 Sum_probs=4.3
Q ss_pred ccccccccc
Q psy1024 336 SCCRTDLTF 344 (514)
Q Consensus 336 SC~RTDL~F 344 (514)
-|-+.|--.
T Consensus 120 ~~y~~~~~s 128 (426)
T KOG2812|consen 120 RSYRSRSPS 128 (426)
T ss_pred ccccccCCC
Confidence 355555433
No 34
>KOG2270|consensus
Probab=79.62 E-value=0.91 Score=48.84 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=7.9
Q ss_pred CCCCCCCccccccccccc
Q psy1024 304 RGPSPEPKIEDSECHRSQ 321 (514)
Q Consensus 304 RsPSPEPkvvD~~~H~SQ 321 (514)
|.--|.|+.-|.+.-.|.
T Consensus 248 rdgw~aPkLKd~~ls~~k 265 (520)
T KOG2270|consen 248 RDGWAAPKLKDASLSTSK 265 (520)
T ss_pred CCCCcCcccccccCChHH
Confidence 333444455554444444
No 35
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=79.46 E-value=1.1 Score=43.25 Aligned_cols=9 Identities=0% Similarity=0.062 Sum_probs=4.2
Q ss_pred chhhhhhhc
Q psy1024 321 QSAIFLRHW 329 (514)
Q Consensus 321 QSArF~kHl 329 (514)
++.+||+-|
T Consensus 46 ~a~~hY~~l 54 (196)
T PF08229_consen 46 NAETHYQTL 54 (196)
T ss_pred HHHHHHHHH
Confidence 444455444
No 36
>PF10278 Med19: Mediator of RNA pol II transcription subunit 19 ; InterPro: IPR019403 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=78.96 E-value=0.43 Score=45.52 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=13.5
Q ss_pred ccccccCCChhHHHHhHH
Q psy1024 391 DLTFKPVPDSKLARKREE 408 (514)
Q Consensus 391 DL~Fydl~~SKLAgkR~E 408 (514)
.=.|.||+.+-|+++|--
T Consensus 76 gkei~pL~~~~L~gFrL~ 93 (178)
T PF10278_consen 76 GKEITPLSSSQLAGFRLH 93 (178)
T ss_pred CccCCcCCHHHHhhccCC
Confidence 345778888888888853
No 37
>PLN02381 valyl-tRNA synthetase
Probab=77.50 E-value=3.7 Score=47.20 Aligned_cols=32 Identities=47% Similarity=0.460 Sum_probs=18.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy1024 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEE 488 (514)
Q Consensus 457 eekeEeee~KeKkeEKkKkkKkkKKKKeeKke 488 (514)
..-+|+.|+|.||+||-|+|+-||-|..+|..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (1066)
T PLN02381 12 ILTEEELERKKKKEEKAKEKELKKLKAAQKEA 43 (1066)
T ss_pred cCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34566677777777776665555544444333
No 38
>KOG1029|consensus
Probab=77.23 E-value=11 Score=43.50 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=12.8
Q ss_pred CcccccccccccCCChHHHH
Q psy1024 335 NSCCRTDLTFKPVPDSKLAR 354 (514)
Q Consensus 335 NSC~RTDL~F~Pl~~SKLAr 354 (514)
++-+|+-|.-.-|+---||.
T Consensus 214 g~qaR~aL~qS~Lpq~~LA~ 233 (1118)
T KOG1029|consen 214 GQQARSALGQSGLPQNQLAH 233 (1118)
T ss_pred cHHHHHHHHhcCCchhhHhh
Confidence 45667777766666665554
No 39
>KOG0112|consensus
Probab=77.18 E-value=1 Score=51.61 Aligned_cols=34 Identities=38% Similarity=0.588 Sum_probs=16.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy1024 458 EGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491 (514)
Q Consensus 458 ekeEeee~KeKkeEKkKkkKkkKKKKeeKkekee 491 (514)
+|+++.|+.+.+.|+|+..+|+||++++-+++++
T Consensus 742 akr~e~erq~r~~E~k~~~~kek~~d~k~~~~~~ 775 (975)
T KOG0112|consen 742 AKRLEDERQERKREKKKERDKEKKEDEKVRKKAE 775 (975)
T ss_pred hhHHHHHHhhhhhhhcchhhhhhhhhcccchhhh
Confidence 3444445555555555555555555444443333
No 40
>KOG1924|consensus
Probab=73.40 E-value=7.6 Score=44.85 Aligned_cols=10 Identities=30% Similarity=0.468 Sum_probs=4.8
Q ss_pred HHHHhhhHHH
Q psy1024 194 RERELNDRIK 203 (514)
Q Consensus 194 ~~~~~~~~~~ 203 (514)
-+.||-||-+
T Consensus 483 ~~ke~ta~qe 492 (1102)
T KOG1924|consen 483 FDKELTARQE 492 (1102)
T ss_pred HHHHHhHHHH
Confidence 3445555543
No 41
>KOG2412|consensus
Probab=69.72 E-value=11 Score=41.86 Aligned_cols=13 Identities=38% Similarity=0.514 Sum_probs=7.0
Q ss_pred hHHHHhHHhhHHh
Q psy1024 401 KLARKREERLRKQ 413 (514)
Q Consensus 401 KLAgkR~ErLpan 413 (514)
||..-|.+.+.+|
T Consensus 172 ~~~e~~~~~~~r~ 184 (591)
T KOG2412|consen 172 KLSETRKEVKRRL 184 (591)
T ss_pred hHHHHHHHHHHHH
Confidence 4555555555554
No 42
>KOG0526|consensus
Probab=68.49 E-value=0.8 Score=50.18 Aligned_cols=31 Identities=42% Similarity=0.426 Sum_probs=15.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcchh
Q psy1024 477 KKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPK 508 (514)
Q Consensus 477 KkkKKKKeeKkekeeEkKk~krk~Kk~r~~~~ 508 (514)
+++||.|.||++++++++ |+.||||---.||
T Consensus 507 ~~~kk~K~ek~~k~~~~~-k~~kk~kdpnapk 537 (615)
T KOG0526|consen 507 SSEKKPKREKKEKEKEKK-KKGKKKKDPNAPK 537 (615)
T ss_pred cccccchhhhHhhhhccc-cCcccCCCCCCCc
Confidence 333444555555555554 5566666544444
No 43
>KOG4043|consensus
Probab=66.06 E-value=4.3 Score=39.51 Aligned_cols=13 Identities=46% Similarity=0.549 Sum_probs=6.9
Q ss_pred cccc-cccCCChHH
Q psy1024 340 TDLT-FKPVPDSKL 352 (514)
Q Consensus 340 TDL~-F~Pl~~SKL 352 (514)
-||. -.|++.|-|
T Consensus 81 ~dL~aThpvE~SsL 94 (214)
T KOG4043|consen 81 FDLDATHPVEASSL 94 (214)
T ss_pred ccccccCcchhHHH
Confidence 4555 456665544
No 44
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=64.97 E-value=6.2 Score=35.41 Aligned_cols=6 Identities=17% Similarity=-0.053 Sum_probs=2.7
Q ss_pred eeeCCC
Q psy1024 438 RIDTPR 443 (514)
Q Consensus 438 fihT~W 443 (514)
|-.+.|
T Consensus 68 l~~sk~ 73 (105)
T PF11214_consen 68 LNDSKW 73 (105)
T ss_pred HHHHHH
Confidence 444444
No 45
>PF01086 Clathrin_lg_ch: Clathrin light chain; InterPro: IPR000996 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents clathrin light chains, which are more divergent in sequence than the heavy chains []. In higher eukaryotes, two genes encode distinct but related light chains, each of which can yield two separate forms via alternative splicing. In yeast there is a single light chain whose sequence is only distantly related to that of higher eukaryotes. Clathrin light chains have a conserved acidic N-terminal domain, a central coiled-coil domain and a conserved C-terminal domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 3LVG_E 3LVH_D.
Probab=64.58 E-value=11 Score=36.25 Aligned_cols=19 Identities=32% Similarity=0.315 Sum_probs=5.4
Q ss_pred HHHHHHHHhhhcchhhhhh
Q psy1024 494 KKMMMMMKKIRRRPKEFLH 512 (514)
Q Consensus 494 Kk~krk~Kk~r~~~~~~~~ 512 (514)
+|+...++.+|+.-++||.
T Consensus 156 ~k~e~~k~~nr~~ee~fl~ 174 (225)
T PF01086_consen 156 EKKEKNKKQNREEEEEFLA 174 (225)
T ss_dssp HHHHHHHHTT---------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455677777777764
No 46
>KOG1029|consensus
Probab=64.49 E-value=34 Score=39.89 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=12.8
Q ss_pred CCCCCCCCCCCCCcccCCccccc
Q psy1024 259 MGGLPHGLGMPGVDSVKHEALTI 281 (514)
Q Consensus 259 MGGlp~lpgMPg~~~~p~~~~~~ 281 (514)
||++-.....|+..+++...+.+
T Consensus 112 ~Gsls~~qpL~~a~p~~m~~s~v 134 (1118)
T KOG1029|consen 112 MGSLSYSQPLPPAAPRRMSSSPV 134 (1118)
T ss_pred CCCcCcCCCCCcccccccCCCcc
Confidence 67666555556655554444443
No 47
>KOG2357|consensus
Probab=64.25 E-value=7.1 Score=41.92 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q psy1024 485 EEEEEEEEKKKMMMMMKKIR 504 (514)
Q Consensus 485 eKkekeeEkKk~krk~Kk~r 504 (514)
||-+|.+.++++++.|||+|
T Consensus 413 Ek~rr~EakerkR~~K~~~p 432 (440)
T KOG2357|consen 413 EKQRRKEAKERKRQAKKKQP 432 (440)
T ss_pred HHHHHHHHHHHHHHHHhcCh
Confidence 44455555555555555555
No 48
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=63.61 E-value=9.9 Score=41.78 Aligned_cols=9 Identities=44% Similarity=1.021 Sum_probs=4.2
Q ss_pred CCCCCCccc
Q psy1024 211 SRPFDPHWL 219 (514)
Q Consensus 211 ~~~~~ph~~ 219 (514)
+.|.+|-|.
T Consensus 235 ~kpgep~W~ 243 (651)
T PTZ00399 235 SKPGEPSWD 243 (651)
T ss_pred CCCCCCCCC
Confidence 344455443
No 49
>COG4499 Predicted membrane protein [Function unknown]
Probab=58.94 E-value=24 Score=38.03 Aligned_cols=16 Identities=6% Similarity=-0.315 Sum_probs=6.5
Q ss_pred cchhhHHHHHHHHhcC
Q psy1024 224 SSLDALRAHALAAALH 239 (514)
Q Consensus 224 ss~daLrahA~AAAsH 239 (514)
..+.+|-.-+-++++.
T Consensus 230 llvl~li~~~Y~~f~~ 245 (434)
T COG4499 230 LLVLLLIYFTYYYFSN 245 (434)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3334444444344444
No 50
>KOG0345|consensus
Probab=54.76 E-value=32 Score=38.06 Aligned_cols=44 Identities=25% Similarity=0.221 Sum_probs=28.8
Q ss_pred hhhhhhcCCCCcccccccccccCCChhHHH-HhHHhhHHhHHHHHH
Q psy1024 375 FLRHWNRGDYNSCCRTDLTFKPVPDSKLAR-KREERLRKQAERERE 419 (514)
Q Consensus 375 F~KHldRG~pNSC~RTDL~Fydl~~SKLAg-kR~ErLpanaEleQa 419 (514)
|+.|+..=.-.. |+.=|.+.||+=-+||. |=-.+||+-.|+.|-
T Consensus 414 FVS~VraY~~H~-cs~Ifr~kdLd~~~lA~~YgLl~lP~M~Elk~~ 458 (567)
T KOG0345|consen 414 FVSHVRAYKKHH-CSYIFRLKDLDLGKLATLYGLLRLPKMPELKQY 458 (567)
T ss_pred HHHHHHHHhhcc-eeEEEeecCCcHHHHHHHHHHHhCCCcHHHhhh
Confidence 444544432233 45567778888888884 667889998877653
No 51
>KOG3054|consensus
Probab=53.96 E-value=29 Score=35.67 Aligned_cols=25 Identities=28% Similarity=0.610 Sum_probs=10.7
Q ss_pred ChhHHHHhHHhhHHhHHHHHHHHHHH
Q psy1024 399 DSKLARKREERLRKQAEREREEREKA 424 (514)
Q Consensus 399 ~SKLAgkR~ErLpanaEleQaqRDyf 424 (514)
+-|+..+....|.+- +-.++||+|-
T Consensus 100 ~~kigkkK~aKleak-qerr~qRe~E 124 (299)
T KOG3054|consen 100 QAKIGKKKEAKLEAK-QERRAQREAE 124 (299)
T ss_pred hhhhhhHHHHHHHHH-HHHHHHHHHH
Confidence 444444444333332 3445555543
No 52
>KOG3878|consensus
Probab=53.45 E-value=40 Score=36.09 Aligned_cols=62 Identities=23% Similarity=0.257 Sum_probs=43.6
Q ss_pred HhhhhhchhhhhhhhhcCCCCcccccccccccCCChhHHHHhHHhhHHhHHHHHHHHHHHHHhhhhhhcCC
Q psy1024 365 ELKIKLFCPVFLRHWNRGDYNSCCRTDLTFKPVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRN 435 (514)
Q Consensus 365 e~~i~l~sarF~KHldRG~pNSC~RTDL~Fydl~~SKLAgkR~ErLpanaEleQaqRDyfgAhtyelLsrp 435 (514)
|-.|||++ |-|-+..|.||+----+|.|.|+-|.. |... -++|-.--|+.+-+.-..||++-
T Consensus 56 Ed~lKLia--l~kQv~~Gp~n~d~~p~~G~lDv~GnD----r~~~---W~~LG~~sre~AM~~FV~Lldr~ 117 (469)
T KOG3878|consen 56 EDNLKLIA--LKKQVALGPFNTDRAPALGVLDVIGND----RQQH---WQLLGEISREQAMEGFVDLLDRM 117 (469)
T ss_pred hhhhhhhh--hHhhhhcCCCCcccCcccceeecccCh----HHHH---HHHHhcccHHHHHHHHHHHHHhc
Confidence 55677764 889999999999888999999988843 2222 22233344666666777888874
No 53
>KOG0345|consensus
Probab=52.45 E-value=20 Score=39.61 Aligned_cols=6 Identities=33% Similarity=0.584 Sum_probs=2.7
Q ss_pred hhhhhc
Q psy1024 428 MCNLLS 433 (514)
Q Consensus 428 tyelLs 433 (514)
.|-||.
T Consensus 443 ~YgLl~ 448 (567)
T KOG0345|consen 443 LYGLLR 448 (567)
T ss_pred HHHHHh
Confidence 444443
No 54
>KOG0526|consensus
Probab=51.41 E-value=3.1 Score=45.80 Aligned_cols=17 Identities=35% Similarity=0.423 Sum_probs=7.8
Q ss_pred HHhhhHHHHHhhhcCCC
Q psy1024 196 RELNDRIKEDLIKNASR 212 (514)
Q Consensus 196 ~~~~~~~~~~~ik~~~~ 212 (514)
.+|+.+.+..|-+..+-
T Consensus 294 E~l~~k~~~kL~k~ysg 310 (615)
T KOG0526|consen 294 EELEEKYKGKLKKEYSG 310 (615)
T ss_pred HHHhhhhcchhhhhcCc
Confidence 34444444444444443
No 55
>COG4499 Predicted membrane protein [Function unknown]
Probab=51.10 E-value=13 Score=39.87 Aligned_cols=12 Identities=17% Similarity=0.011 Sum_probs=5.8
Q ss_pred HHHHhhhhhchh
Q psy1024 362 KQAELKIKLFCP 373 (514)
Q Consensus 362 k~ae~~i~l~sa 373 (514)
+-..-.|.|.|+
T Consensus 303 eNi~NnislkSd 314 (434)
T COG4499 303 ENILNNISLKSD 314 (434)
T ss_pred HHHhhccccccc
Confidence 334445555554
No 56
>KOG3794|consensus
Probab=50.92 E-value=19 Score=38.88 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1024 177 ELEHLEREKREREIRELRERE 197 (514)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~ 197 (514)
|-.+--.++++.|++.-++.|
T Consensus 29 eQ~~s~~~kkqEEL~~qyekE 49 (453)
T KOG3794|consen 29 EQKISYDKKKQEELRRQYEKE 49 (453)
T ss_pred hhhcccccchHHHHHHHHHHH
Confidence 333344455666665544433
No 57
>KOG2505|consensus
Probab=50.88 E-value=29 Score=38.49 Aligned_cols=22 Identities=27% Similarity=0.228 Sum_probs=12.2
Q ss_pred CCCCCCCCCCCCCCCCCCCchh
Q psy1024 151 QSSSSAQPPSSSPDCHSLPACL 172 (514)
Q Consensus 151 ~~ss~~~~~~~~~~~~slp~~~ 172 (514)
||.+-.+--..--.-||--+.|
T Consensus 247 qGgsQs~~Da~gG~ahSAGa~L 268 (591)
T KOG2505|consen 247 QGGSQSAHDAGGGAAHSAGAQL 268 (591)
T ss_pred cccccchhhccCCccccchHHH
Confidence 4444334444445667877776
No 58
>KOG4043|consensus
Probab=50.37 E-value=10 Score=37.08 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=9.3
Q ss_pred cccCCChhHHHHhH
Q psy1024 394 FKPVPDSKLARKRE 407 (514)
Q Consensus 394 Fydl~~SKLAgkR~ 407 (514)
..||+.|.||++|-
T Consensus 108 llpLTp~qlaGFkL 121 (214)
T KOG4043|consen 108 LLPLTPSQLAGFKL 121 (214)
T ss_pred cccCChhhhcceec
Confidence 34677777777764
No 59
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=48.71 E-value=22 Score=38.86 Aligned_cols=24 Identities=50% Similarity=0.607 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchh
Q psy1024 485 EEEEEEEEKKKMMMMMKKIRRRPK 508 (514)
Q Consensus 485 eKkekeeEkKk~krk~Kk~r~~~~ 508 (514)
+++|+|+.+=||+|+.-|||+..+
T Consensus 535 ~~ee~e~k~l~~immsnkqkkly~ 558 (591)
T COG5163 535 VDEEEEEKKLKMIMMSNKQKKLYK 558 (591)
T ss_pred hhhHHHHHHHHHHHhhhhHHHHHH
Confidence 333444444456666667776544
No 60
>PF06658 DUF1168: Protein of unknown function (DUF1168); InterPro: IPR009548 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=48.19 E-value=67 Score=29.97 Aligned_cols=37 Identities=32% Similarity=0.439 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q psy1024 467 EKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKI 503 (514)
Q Consensus 467 eKkeEKkKkkKkkKKKKeeKkekeeEkKk~krk~Kk~ 503 (514)
.+.+++++....+-.|+.+|+.|+++++++++++++.
T Consensus 70 ~kree~~~~~eekTaKkR~KR~KkK~kk~~~k~~~~~ 106 (142)
T PF06658_consen 70 RKREERKKEAEEKTAKKRAKRQKKKQKKKKKKKKKKK 106 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 3444444444444456666666666666655555543
No 61
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=47.66 E-value=37 Score=37.56 Aligned_cols=7 Identities=0% Similarity=-0.050 Sum_probs=2.7
Q ss_pred hhhhhcC
Q psy1024 428 MCNLLSR 434 (514)
Q Consensus 428 tyelLsr 434 (514)
.+.+-|+
T Consensus 532 Gi~l~D~ 538 (651)
T PTZ00399 532 GIRIEDK 538 (651)
T ss_pred CCEEEEc
Confidence 3333343
No 62
>PF08524 rRNA_processing: rRNA processing; InterPro: IPR013730 This is a family of proteins that is are involved in rRNA processing []. In a localisation study they were found to localise to the nucleus and nucleolus []. The family also includes other metazoa members from plants to mammals where the protein has been named BR22 and is associated with TTF-1, thyroid transcription factor 1 []. In the lungs, the family binds TTF-1 to form a complex which influences the expression of the key lung surfactant protein-B (SP-B) and -C (SP-C), the small hydrophobic surfactant proteins that maintain surface tension in alveoli [].
Probab=47.59 E-value=50 Score=30.35 Aligned_cols=16 Identities=19% Similarity=-0.081 Sum_probs=7.4
Q ss_pred HHHHHHHHhhhhhhcC
Q psy1024 419 EEREKAQASMCNLLSR 434 (514)
Q Consensus 419 aqRDyfgAhtyelLsr 434 (514)
-.++||=+-.-|-.+.
T Consensus 36 l~k~Y~K~lk~Eg~~~ 51 (148)
T PF08524_consen 36 LRKEYFKALKQEGYSS 51 (148)
T ss_pred HHHHHHHHHHHccCcc
Confidence 3455665544443333
No 63
>KOG0996|consensus
Probab=47.16 E-value=48 Score=39.81 Aligned_cols=113 Identities=18% Similarity=0.193 Sum_probs=77.2
Q ss_pred CCccccccccccchhhhhhhcccCCCCcccccccccccCCChHHHHHhHHHHHHHHHhhhhhchhhhhhhhhcCCCCccc
Q psy1024 309 EPKIEDSECHRSQSAIFLRHWNRGDYNSCCRTDLTFKPVPDSKLARKREERLRKQAELKIKLFCPVFLRHWNRGDYNSCC 388 (514)
Q Consensus 309 EPkvvD~~~H~SQSArF~kHldRG~yNSC~RTDL~F~Pl~~SKLArKree~~Rk~ae~~i~l~sarF~KHldRG~pNSC~ 388 (514)
-=-|||+.+=+...--|++-.+=| | -+|++|+-=+ .-.++++...-..--.|.+--|.-+ ++=+
T Consensus 644 dyiVVdt~e~aq~cI~fl~~~nLg------r--aTFi~LDki~------~~~~~l~~i~tpenvPRLfDLv~~~--d~~~ 707 (1293)
T KOG0996|consen 644 DYIVVDTIETAQECINFLKKNNLG------R--ATFIILDKIK------DHQKKLAPITTPENVPRLFDLVKCK--DEKF 707 (1293)
T ss_pred ceEEeccHHHHHHHHHHHHHcCCC------c--eeEEehHhhh------hhhhccCCCCCCCCcchHhhhhccC--CHHH
Confidence 345788775554444477766555 1 2577776322 1223444444444455666656555 6888
Q ss_pred ccccccccCCChhHHHHhHHhhHHhHHHHHHHHHHHHHhh-hhhhcCCCceeeCCCCCCCC
Q psy1024 389 RTDLTFKPVPDSKLARKREERLRKQAEREREEREKAQASM-CNLLSRNPERIDTPRRRGGG 448 (514)
Q Consensus 389 RTDL~Fydl~~SKLAgkR~ErLpanaEleQaqRDyfgAht-yelLsrpgefihT~WtRGGG 448 (514)
|.+|||.- |.-.+-.+ |+||.|=-||-.. |..+.=.|..|+--+|=.||
T Consensus 708 r~aFYfaL---------rdtLV~d~--LeQAtRiaygk~rr~RVvTL~G~lIe~SGtmtGG 757 (1293)
T KOG0996|consen 708 RPAFYFAL---------RDTLVADN--LEQATRIAYGKDRRWRVVTLDGSLIEKSGTMTGG 757 (1293)
T ss_pred HHHHHHHH---------hhhhhhcC--HHHHHHHhhcCCCceEEEEecceeecccccccCC
Confidence 99999877 88888999 9999999999887 87777789999988876666
No 64
>PF12923 RRP7: Ribosomal RNA-processing protein 7 (RRP7); InterPro: IPR024326 Ribosomal RNA-processing protein 7 (RRP7) is an essential protein in yeast that is involved in pre-rRNA processing and ribosome assembly []. It is speculated to be required for correct assembly of rpS27 into the pre-ribosomal particle [, ]. This entry includes RRP7 and homologous sequences from other organisms.
Probab=46.42 E-value=1.2e+02 Score=27.05 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhc
Q psy1024 481 KKKEEEEEEEEEKKKMMMMMKKIRR 505 (514)
Q Consensus 481 KKKeeKkekeeEkKk~krk~Kk~r~ 505 (514)
+.-.+-+.|=+|.|++-..+|..||
T Consensus 103 ~~l~eLrkkFeeDK~ki~~mk~~Rk 127 (131)
T PF12923_consen 103 NELAELRKKFEEDKKKIEQMKAARK 127 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3334445555666666666676663
No 65
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=46.01 E-value=28 Score=37.52 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=10.7
Q ss_pred CCCCCCccchhcccchhhHHHHH
Q psy1024 211 SRPFDPHWLELQRSSLDALRAHA 233 (514)
Q Consensus 211 ~~~~~ph~~~~~~ss~daLrahA 233 (514)
.+-.-|-.++|.-..=|.++..+
T Consensus 108 p~s~~~~rl~L~~~~g~~F~~~~ 130 (517)
T PF12569_consen 108 PRSDAPRRLPLDFLEGDEFKERL 130 (517)
T ss_pred ccccchhHhhcccCCHHHHHHHH
Confidence 33344445555544444444444
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=45.54 E-value=28 Score=37.51 Aligned_cols=26 Identities=23% Similarity=0.126 Sum_probs=10.2
Q ss_pred HHHHhHHhhHHhHHHHHHHHHHHHHhhh
Q psy1024 402 LARKREERLRKQAEREREEREKAQASMC 429 (514)
Q Consensus 402 LAgkR~ErLpanaEleQaqRDyfgAhty 429 (514)
+|=+|.-.+-+. -.+=.=|+|-=|+|
T Consensus 323 ~ALk~~~~v~k~--f~~~~~DQfDFH~Y 348 (517)
T PF12569_consen 323 LALKRFHAVLKH--FDDFEEDQFDFHSY 348 (517)
T ss_pred HHHHHHHHHHHH--HHHHhcccccHHHH
Confidence 333444444333 23333344444444
No 67
>KOG2138|consensus
Probab=45.11 E-value=9.2 Score=43.58 Aligned_cols=22 Identities=36% Similarity=0.403 Sum_probs=14.2
Q ss_pred ccccccccCCchhHHHHhhhcC
Q psy1024 42 KQTISHSTSSSATSVQHKMKRG 63 (514)
Q Consensus 42 k~t~shst~ss~~~vqhk~krg 63 (514)
+|.|+-|.++++...+|--++|
T Consensus 231 ~q~L~gssg~~~~pfkh~~ef~ 252 (883)
T KOG2138|consen 231 DQILSGSSGSSAKPFKHGNEFG 252 (883)
T ss_pred chhhccccccccchhcccchhc
Confidence 4555556666777777766655
No 68
>KOG2505|consensus
Probab=44.70 E-value=39 Score=37.56 Aligned_cols=7 Identities=0% Similarity=-0.121 Sum_probs=4.1
Q ss_pred HHHHHHH
Q psy1024 419 EEREKAQ 425 (514)
Q Consensus 419 aqRDyfg 425 (514)
+-|+-|.
T Consensus 474 dVk~~F~ 480 (591)
T KOG2505|consen 474 DVKSIFI 480 (591)
T ss_pred HHHHHHH
Confidence 4456666
No 69
>KOG1518|consensus
Probab=43.83 E-value=36 Score=35.79 Aligned_cols=60 Identities=22% Similarity=0.261 Sum_probs=33.3
Q ss_pred cccccCCChhHHHHhHHhhHHhHHHH-H-HHHHHHHHhhhhhhcCCCceeeCCCCCCCCCCCCc
Q psy1024 392 LTFKPVPDSKLARKREERLRKQAERE-R-EEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEE 453 (514)
Q Consensus 392 L~Fydl~~SKLAgkR~ErLpanaEle-Q-aqRDyfgAhtyelLsrpgefihT~WtRGGGgggee 453 (514)
+.|-|..|++--.-+...++++-|++ + +|-+.- ...|.++.-.+|.-..|+|++||||-.
T Consensus 60 fm~~~~sD~~~l~~~~~~ir~~mE~lI~~~Qaevc--~aleaidgg~kF~~D~W~r~eGGgGis 121 (382)
T KOG1518|consen 60 FMAPPDSDDVTLPSSSSSIRAQMETLIREAQAEVC--QALEAIDGGQKFKVDRWTRGEGGGGIS 121 (382)
T ss_pred cccCCCCCcccCCCChHHHHHHHHHHHHHHHHHHH--HHHHHhccccccceeeeecCCCCCceE
Confidence 44555555444443444555554432 2 222222 234556665678888999999988743
No 70
>PF11208 DUF2992: Protein of unknown function (DUF2992); InterPro: IPR016787 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=43.36 E-value=58 Score=29.83 Aligned_cols=9 Identities=33% Similarity=0.608 Sum_probs=4.6
Q ss_pred ccccccCCC
Q psy1024 341 DLTFKPVPD 349 (514)
Q Consensus 341 DL~F~Pl~~ 349 (514)
=++|..-|.
T Consensus 26 rv~FG~EP~ 34 (132)
T PF11208_consen 26 RVTFGAEPK 34 (132)
T ss_pred EEeeCCCCC
Confidence 455664443
No 71
>KOG0163|consensus
Probab=41.06 E-value=48 Score=38.80 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=12.9
Q ss_pred chhhhHHHHHHHHH---HHHHHHHHHHHHHH
Q psy1024 170 ACLCYQLELEHLER---EKREREIRELRERE 197 (514)
Q Consensus 170 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 197 (514)
.+.|...--|.|.. +.--+|-.||-++|
T Consensus 470 EQFCINyCNEKLQ~FFNerILkeEQElYekE 500 (1259)
T KOG0163|consen 470 EQFCINYCNEKLQKFFNERILKEEQELYEKE 500 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35565554455443 33333344455544
No 72
>KOG2481|consensus
Probab=41.02 E-value=20 Score=39.65 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q psy1024 244 PHGMAAGHPAFLPPEMGGLP 263 (514)
Q Consensus 244 PHgm~a~HP~tldPqMGGlp 263 (514)
|+.-+..||..+| .+-|+
T Consensus 202 P~~f~~~~~tdVD--f~vm~ 219 (570)
T KOG2481|consen 202 PYAFVELHPTDVD--FRVMP 219 (570)
T ss_pred ecCCCCcCccccc--cchhh
Confidence 5666677777677 44444
No 73
>PF08243 SPT2: SPT2 chromatin protein; InterPro: IPR013256 This entry includes the Saccharomyces cerevisiae (Baker's yeast) protein SPT2 which is a chromatin protein involved in transcriptional regulation []. These proteins shows conservation of several domains across numerous species, including having a cluster of positively charged amino acids. This cluster probably functions in the binding properties of the proteins []. Sin1p/Spt2p probably modulates the local chromatin structure by binding two strands of double-stranded DNA at their crossover point. Sin1p/Spt2p has sequence similarity to HMG1 and serves as a negative transcriptional regulator of a small family of genes that are activated by the SWI/SNF chromatin-remodelling complex. It is also involved in maintaining the integrity of chromatin during transcription elongation. Sin1p/Spt2 is required for, and is directly involved in, the efficient recruitment of the mRNA cleavage/polyadenylation complex []. Spt2 is also involved in regulating levels of histone H3 over transcribed regions [].
Probab=40.61 E-value=48 Score=29.59 Aligned_cols=8 Identities=0% Similarity=0.368 Sum_probs=3.0
Q ss_pred HHhhhhhh
Q psy1024 425 QASMCNLL 432 (514)
Q Consensus 425 gAhtyelL 432 (514)
..+-..++
T Consensus 46 ~~~I~~iF 53 (116)
T PF08243_consen 46 RSEIWAIF 53 (116)
T ss_pred HHHHHHHH
Confidence 33333333
No 74
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=40.42 E-value=6.8 Score=45.82 Aligned_cols=14 Identities=64% Similarity=1.113 Sum_probs=6.5
Q ss_pred CCCCCCCCchhhcc
Q psy1024 445 RGGGGGGEEEEEEE 458 (514)
Q Consensus 445 RGGGgggeeeeeee 458 (514)
++||.|++.|++++
T Consensus 855 ~~~~d~~dse~~~~ 868 (1096)
T TIGR00927 855 GGGSDGGDSEEEEE 868 (1096)
T ss_pred cCCCCccccccccc
Confidence 34445555544433
No 75
>PLN02316 synthase/transferase
Probab=40.20 E-value=86 Score=36.98 Aligned_cols=7 Identities=0% Similarity=-0.187 Sum_probs=3.7
Q ss_pred CCCccch
Q psy1024 214 FDPHWLE 220 (514)
Q Consensus 214 ~~ph~~~ 220 (514)
.++.|.-
T Consensus 139 ~~~~~f~ 145 (1036)
T PLN02316 139 RGNKLFV 145 (1036)
T ss_pred CCCeEEe
Confidence 3566653
No 76
>KOG1951|consensus
Probab=39.93 E-value=90 Score=28.65 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHhh---hcchhhhh
Q psy1024 486 EEEEEEEKKKMMMMMKKI---RRRPKEFL 511 (514)
Q Consensus 486 KkekeeEkKk~krk~Kk~---r~~~~~~~ 511 (514)
++.+.++-...+++.|+. +++-+.|+
T Consensus 76 ~k~~~~~~~~~r~~~kkr~~~kk~~k~~~ 104 (115)
T KOG1951|consen 76 KKAKKEEPLEQREKEKKREGPKKVGKSTL 104 (115)
T ss_pred HHHHHhhhhhhhHHHHHHhhhcccchhHH
Confidence 333333333334444444 45555554
No 77
>KOG3654|consensus
Probab=39.81 E-value=1.6e+02 Score=33.31 Aligned_cols=43 Identities=33% Similarity=0.461 Sum_probs=27.3
Q ss_pred cCCCCccccccccccc--CCChhHHHHhHHhhHHhHHHHHHHHHHHH
Q psy1024 381 RGDYNSCCRTDLTFKP--VPDSKLARKREERLRKQAEREREEREKAQ 425 (514)
Q Consensus 381 RG~pNSC~RTDL~Fyd--l~~SKLAgkR~ErLpanaEleQaqRDyfg 425 (514)
-|+.-.|+. |.|.| .+...||.+|...|.++..+..+-|.+.+
T Consensus 368 egdqkvg~g--fffkdeqkaedema~kraallekqqrraeear~rkq 412 (708)
T KOG3654|consen 368 EGDQKVGLG--FFFKDEQKAEDEMAQKRAALLEKQQRRAEEARRRKQ 412 (708)
T ss_pred cCCccccee--eeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666654 44444 45678999999999888444444444443
No 78
>KOG4055|consensus
Probab=39.63 E-value=59 Score=32.29 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=11.9
Q ss_pred hcCCCceeeCCCCCCCCCC
Q psy1024 432 LSRNPERIDTPRRRGGGGG 450 (514)
Q Consensus 432 LsrpgefihT~WtRGGGgg 450 (514)
+.++++||-.--+...|.|
T Consensus 60 ~e~vp~fVrnv~GSSAgaG 78 (213)
T KOG4055|consen 60 LENVPEFVRNVMGSSAGAG 78 (213)
T ss_pred cccccHHHHhcccccccCC
Confidence 4578899876555444444
No 79
>KOG2223|consensus
Probab=36.99 E-value=57 Score=36.10 Aligned_cols=7 Identities=43% Similarity=0.187 Sum_probs=3.3
Q ss_pred ChhHHHH
Q psy1024 399 DSKLARK 405 (514)
Q Consensus 399 ~SKLAgk 405 (514)
|=||-|+
T Consensus 195 gwklfgk 201 (586)
T KOG2223|consen 195 GWKLFGK 201 (586)
T ss_pred hhhhhcc
Confidence 4444454
No 80
>PLN02967 kinase
Probab=34.63 E-value=8.2 Score=42.24 Aligned_cols=19 Identities=37% Similarity=0.413 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy1024 484 EEEEEEEEEKKKMMMMMKK 502 (514)
Q Consensus 484 eeKkekeeEkKk~krk~Kk 502 (514)
+++.++.++|+|++||.||
T Consensus 127 ~~~~~~~~~~~~~~~~~~~ 145 (581)
T PLN02967 127 DVEEEKTEKKVRKRRKVKK 145 (581)
T ss_pred chhhhhcchhhhhcccccc
Confidence 3344444444555555554
No 81
>KOG2809|consensus
Probab=34.38 E-value=26 Score=36.54 Aligned_cols=6 Identities=17% Similarity=0.191 Sum_probs=3.3
Q ss_pred CCcccc
Q psy1024 309 EPKIED 314 (514)
Q Consensus 309 EPkvvD 314 (514)
-+|+++
T Consensus 74 d~W~~h 79 (326)
T KOG2809|consen 74 DQWIAH 79 (326)
T ss_pred ccchhh
Confidence 356664
No 82
>KOG2002|consensus
Probab=34.25 E-value=82 Score=37.28 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=6.9
Q ss_pred hhhhhhcCCCce
Q psy1024 427 SMCNLLSRNPER 438 (514)
Q Consensus 427 htyelLsrpgef 438 (514)
-.|.-|+.++.+
T Consensus 790 r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 790 RLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHhcCCC
Confidence 345566666555
No 83
>PF12757 DUF3812: Protein of unknown function (DUF3812); InterPro: IPR024527 This family of fungal proteins represents the eisosome 1 family. Eisosome protein 1 is required for normal formation of eisosomes, large cytoplasmic protein assemblies that localize to specialised domains on plasma membrane and mark the site of endocytosis [].
Probab=33.80 E-value=1.7e+02 Score=26.16 Aligned_cols=13 Identities=8% Similarity=0.118 Sum_probs=8.8
Q ss_pred hhhhcCCCceeeC
Q psy1024 429 CNLLSRNPERIDT 441 (514)
Q Consensus 429 yelLsrpgefihT 441 (514)
++....+..+|+=
T Consensus 51 ~~~~~~~~gkV~l 63 (126)
T PF12757_consen 51 EEKRDENAGKVNL 63 (126)
T ss_pred HhhcccCCCeeeC
Confidence 5666677777764
No 84
>KOG0163|consensus
Probab=32.23 E-value=88 Score=36.84 Aligned_cols=8 Identities=38% Similarity=0.737 Sum_probs=3.8
Q ss_pred cccccccc
Q psy1024 339 RTDLTFKP 346 (514)
Q Consensus 339 RTDL~F~P 346 (514)
-|-++|.|
T Consensus 752 lTKVFFr~ 759 (1259)
T KOG0163|consen 752 LTKVFFRP 759 (1259)
T ss_pred ceeEeecC
Confidence 34455544
No 85
>PF12757 DUF3812: Protein of unknown function (DUF3812); InterPro: IPR024527 This family of fungal proteins represents the eisosome 1 family. Eisosome protein 1 is required for normal formation of eisosomes, large cytoplasmic protein assemblies that localize to specialised domains on plasma membrane and mark the site of endocytosis [].
Probab=31.27 E-value=88 Score=27.99 Aligned_cols=24 Identities=38% Similarity=0.518 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Q psy1024 470 KEKKKKKKKKKKKKEEEEEEEEEK 493 (514)
Q Consensus 470 eEKkKkkKkkKKKKeeKkekeeEk 493 (514)
++++.++...+++.++.|++++++
T Consensus 101 ~e~k~~~~~~k~~~~~~k~re~e~ 124 (126)
T PF12757_consen 101 EEIKLDEEERKREHEEWKEREREK 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333344444444444443
No 86
>KOG2967|consensus
Probab=30.59 E-value=1.1e+02 Score=31.89 Aligned_cols=7 Identities=29% Similarity=0.577 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy1024 489 EEEEKKK 495 (514)
Q Consensus 489 keeEkKk 495 (514)
++.|+.+
T Consensus 57 r~~er~~ 63 (314)
T KOG2967|consen 57 REKERLR 63 (314)
T ss_pred HHHHHHH
Confidence 3333333
No 87
>PLN02705 beta-amylase
Probab=30.06 E-value=51 Score=37.35 Aligned_cols=10 Identities=60% Similarity=1.195 Sum_probs=4.1
Q ss_pred CCCCCCCCCC
Q psy1024 442 PRRRGGGGGG 451 (514)
Q Consensus 442 ~WtRGGGggg 451 (514)
|-++||||||
T Consensus 64 ~~~~~~~~~~ 73 (681)
T PLN02705 64 NISSGGGGGG 73 (681)
T ss_pred cccCCCCCCC
Confidence 3344444443
No 88
>PLN02316 synthase/transferase
Probab=29.81 E-value=93 Score=36.73 Aligned_cols=13 Identities=15% Similarity=0.245 Sum_probs=8.9
Q ss_pred CCccccccccccc
Q psy1024 384 YNSCCRTDLTFKP 396 (514)
Q Consensus 384 pNSC~RTDL~Fyd 396 (514)
|.-+..-|+-|.+
T Consensus 208 p~~A~~ldfVf~~ 220 (1036)
T PLN02316 208 PKEAYKMDFVFFN 220 (1036)
T ss_pred CccceEEEEEEeC
Confidence 4556667777877
No 89
>KOG2963|consensus
Probab=28.71 E-value=1.2e+02 Score=32.66 Aligned_cols=7 Identities=57% Similarity=0.847 Sum_probs=2.9
Q ss_pred HHHHHhh
Q psy1024 193 LRERELN 199 (514)
Q Consensus 193 ~~~~~~~ 199 (514)
|+||.-|
T Consensus 59 LkerK~N 65 (405)
T KOG2963|consen 59 LKERKRN 65 (405)
T ss_pred HHHHhhh
Confidence 4444433
No 90
>KOG2507|consensus
Probab=28.24 E-value=46 Score=36.42 Aligned_cols=7 Identities=14% Similarity=0.112 Sum_probs=2.6
Q ss_pred HHHHHhh
Q psy1024 422 EKAQASM 428 (514)
Q Consensus 422 DyfgAht 428 (514)
..|-+.+
T Consensus 122 s~f~~a~ 128 (506)
T KOG2507|consen 122 SIFSAAL 128 (506)
T ss_pred Hhhhhhh
Confidence 3333333
No 91
>KOG3228|consensus
Probab=27.52 E-value=4.9e+02 Score=26.40 Aligned_cols=21 Identities=43% Similarity=0.539 Sum_probs=12.5
Q ss_pred HHHhHHhhHHhHHHHHHHHHHHHHh
Q psy1024 403 ARKREERLRKQAEREREEREKAQAS 427 (514)
Q Consensus 403 AgkR~ErLpanaEleQaqRDyfgAh 427 (514)
...|..-|+++ |++.+| |||.
T Consensus 52 ee~rk~dlR~e--leerER--~~a~ 72 (226)
T KOG3228|consen 52 EELRKRDLRRE--LEERER--AGAS 72 (226)
T ss_pred HHHHHHHHHHH--HHHHHh--hccc
Confidence 34455567766 776666 5554
No 92
>PF15002 ERK-JNK_inhib: ERK and JNK pathways, inhibitor
Probab=26.12 E-value=70 Score=31.30 Aligned_cols=14 Identities=21% Similarity=0.600 Sum_probs=9.1
Q ss_pred hhhhhhcCCCceee
Q psy1024 427 SMCNLLSRNPERID 440 (514)
Q Consensus 427 htyelLsrpgefih 440 (514)
.-.+++.+.+.||-
T Consensus 153 QEl~i~erd~~Y~N 166 (207)
T PF15002_consen 153 QELNIIERDPNYVN 166 (207)
T ss_pred HHhCCCCCCccccC
Confidence 34567777777764
No 93
>PF09428 DUF2011: Fungal protein of unknown function (DUF2011); InterPro: IPR018555 This is a family of fungal proteins whose function is unknown.
Probab=25.86 E-value=1.4e+02 Score=27.31 Aligned_cols=8 Identities=25% Similarity=-0.027 Sum_probs=4.0
Q ss_pred CCceeeCC
Q psy1024 435 NPERIDTP 442 (514)
Q Consensus 435 pgefihT~ 442 (514)
|...||-+
T Consensus 60 pwRVi~l~ 67 (131)
T PF09428_consen 60 PWRVIDLK 67 (131)
T ss_pred CceEEEec
Confidence 44455544
No 94
>KOG2409|consensus
Probab=25.78 E-value=98 Score=34.95 Aligned_cols=17 Identities=12% Similarity=0.141 Sum_probs=8.3
Q ss_pred HHHHHhhhHHHHHhhhc
Q psy1024 193 LRERELNDRIKEDLIKN 209 (514)
Q Consensus 193 ~~~~~~~~~~~~~~ik~ 209 (514)
+|.||+-.+++.-.+..
T Consensus 34 ~kk~E~lQk~~~k~~e~ 50 (647)
T KOG2409|consen 34 NKKREELQKYEDKYGEA 50 (647)
T ss_pred HHhHHHHHHHHhhhccc
Confidence 44555555555544433
No 95
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=25.62 E-value=1.9e+02 Score=28.67 Aligned_cols=19 Identities=32% Similarity=0.583 Sum_probs=12.0
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q psy1024 247 MAAGHPAFLPPEMGGLPHG 265 (514)
Q Consensus 247 m~a~HP~tldPqMGGlp~l 265 (514)
|..+|=+|++|-.||....
T Consensus 1 MTTAHRPT~~pA~G~~~~~ 19 (244)
T PF04889_consen 1 MTTAHRPTFEPARGGEGQG 19 (244)
T ss_pred CCCccCCCcccccCCcccC
Confidence 5566777777766665433
No 96
>PRK05330 coproporphyrinogen III oxidase; Provisional
Probab=25.43 E-value=49 Score=34.21 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhhhhhcCCCceeeCCCCCCCCCCCC
Q psy1024 417 EREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGE 452 (514)
Q Consensus 417 eQaqRDyfgAhtyelLsrpgefihT~WtRGGGggge 452 (514)
.+.-+|.+= ..+|.|+..+.|.-+.|+|.+||||-
T Consensus 14 ~~~lQ~~Ic-~~lE~~dg~~~F~~d~W~R~~GGGG~ 48 (300)
T PRK05330 14 LLGLQDRIC-AALEALDGEARFVEDSWQRPEGGGGR 48 (300)
T ss_pred HHHHHHHHH-HHHHhhcCCCCeeEeccccCCCCCce
Confidence 333344432 34677887789999999998655543
No 97
>PF05236 TAF4: Transcription initiation factor TFIID component TAF4 family; InterPro: IPR007900 Accurate transcription initiation at protein-coding genes by RNA polymerase II requires the assembly of a multiprotein complex around the mRNA start site. Transcription factor TFIID is one of the general factors involved in this process. Yeast TFIID comprises the TATA binding protein and 14 TBP-associated factors (TAFIIs), nine of which contain histone-fold domains (IPR007124 from INTERPRO). The C-terminal region of the TFIID-specific yeast TAF4 (yTAF4) containing the HFD shares strong sequence similarity with Drosophila (d)TAF4 and human TAF4. A structure/function analysis of yTAF4 demonstrates that the HFD, a short conserved C-terminal domain (CCTD), and the region separating them are all required for yTAF4 function. This region of similarity is found in Transcription initiation factor TFIID component TAF4 []. ; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_C.
Probab=25.06 E-value=24 Score=34.11 Aligned_cols=10 Identities=50% Similarity=0.551 Sum_probs=4.3
Q ss_pred HHHHHHHHhh
Q psy1024 358 ERLRKQAELK 367 (514)
Q Consensus 358 e~~Rk~ae~~ 367 (514)
+++|.+++.-
T Consensus 79 ~rLr~lie~~ 88 (264)
T PF05236_consen 79 ERLRNLIEKA 88 (264)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 98
>PLN03086 PRLI-interacting factor K; Provisional
Probab=24.68 E-value=1.6e+02 Score=32.83 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=17.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy1024 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491 (514)
Q Consensus 459 keEeee~KeKkeEKkKkkKkkKKKKeeKkekee 491 (514)
|-|.|.++++++.|+|-++++|.|++..+.+|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (567)
T PLN03086 11 KLEREQRERKQRAKLKLERERKAKEEAAKQREA 43 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555554444
No 99
>KOG2507|consensus
Probab=24.62 E-value=1e+02 Score=33.99 Aligned_cols=18 Identities=6% Similarity=0.045 Sum_probs=10.9
Q ss_pred CCCCCCCccccccccccc
Q psy1024 304 RGPSPEPKIEDSECHRSQ 321 (514)
Q Consensus 304 RsPSPEPkvvD~~~H~SQ 321 (514)
-.++|-++..-.+.|++-
T Consensus 163 da~~p~at~stv~g~sTt 180 (506)
T KOG2507|consen 163 DAVQPSATKSTVTGASTT 180 (506)
T ss_pred ccCCCCCCCccccccccc
Confidence 455666666666666553
No 100
>KOG4246|consensus
Probab=24.04 E-value=76 Score=37.45 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=9.9
Q ss_pred cCCCCCCCCcccccccCCCCC
Q psy1024 127 SRGIGDPIPNHILLSEHKPRP 147 (514)
Q Consensus 127 ~~g~g~~i~~h~~~~~h~~~~ 147 (514)
++|+-.|...-.++-.|.+.+
T Consensus 256 ~~g~~lp~~r~~~~~khs~~~ 276 (1194)
T KOG4246|consen 256 GYGVSLPPGRDYGTGKHSAAS 276 (1194)
T ss_pred CcCCCCCCCCCccccCCCCCc
Confidence 344444444444555555544
No 101
>PF13300 DUF4078: Domain of unknown function (DUF4078)
Probab=23.09 E-value=2.8e+02 Score=24.08 Aligned_cols=6 Identities=0% Similarity=-0.147 Sum_probs=2.6
Q ss_pred hhhcCC
Q psy1024 430 NLLSRN 435 (514)
Q Consensus 430 elLsrp 435 (514)
+.+..|
T Consensus 12 ~~~~~P 17 (88)
T PF13300_consen 12 ESATPP 17 (88)
T ss_pred hccCCC
Confidence 334444
No 102
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=22.46 E-value=1.4e+02 Score=29.67 Aligned_cols=9 Identities=33% Similarity=0.187 Sum_probs=4.6
Q ss_pred HHHHHHHHH
Q psy1024 417 EREEREKAQ 425 (514)
Q Consensus 417 eQaqRDyfg 425 (514)
+.+=|++||
T Consensus 162 ~eEvre~fG 170 (217)
T PF10147_consen 162 IEEVREHFG 170 (217)
T ss_pred HHHHHHHhC
Confidence 344455555
No 103
>KOG0388|consensus
Probab=22.45 E-value=1.3e+02 Score=35.50 Aligned_cols=12 Identities=33% Similarity=0.628 Sum_probs=6.4
Q ss_pred hhhhcccCCCCc
Q psy1024 325 FLRHWNRGDYNS 336 (514)
Q Consensus 325 F~kHldRG~yNS 336 (514)
..|-|..|+.+.
T Consensus 309 ~~r~l~kgd~~e 320 (1185)
T KOG0388|consen 309 HLRKLAKGDISE 320 (1185)
T ss_pred HHHHhccccHHH
Confidence 445555665544
No 104
>KOG2223|consensus
Probab=22.33 E-value=1.6e+02 Score=32.73 Aligned_cols=6 Identities=0% Similarity=-0.340 Sum_probs=2.5
Q ss_pred HHHHHH
Q psy1024 421 REKAQA 426 (514)
Q Consensus 421 RDyfgA 426 (514)
+.-||.
T Consensus 196 wklfgk 201 (586)
T KOG2223|consen 196 WKLFGK 201 (586)
T ss_pred hhhhcc
Confidence 344443
No 105
>KOG2809|consensus
Probab=22.00 E-value=64 Score=33.80 Aligned_cols=7 Identities=14% Similarity=0.306 Sum_probs=2.8
Q ss_pred HHHHHhh
Q psy1024 422 EKAQASM 428 (514)
Q Consensus 422 DyfgAht 428 (514)
|||---+
T Consensus 165 D~~~~k~ 171 (326)
T KOG2809|consen 165 DSSVKKM 171 (326)
T ss_pred chhhhHh
Confidence 4443333
No 106
>KOG4156|consensus
Probab=21.41 E-value=1.1e+02 Score=35.53 Aligned_cols=12 Identities=17% Similarity=0.351 Sum_probs=7.5
Q ss_pred CCCCCCCCCCcc
Q psy1024 301 HIPRGPSPEPKI 312 (514)
Q Consensus 301 ~~~RsPSPEPkv 312 (514)
.+-|.|+|-|+.
T Consensus 499 qL~~d~~~~PrL 510 (1329)
T KOG4156|consen 499 QLGVDVSIKPRL 510 (1329)
T ss_pred hcCCCCCccccc
Confidence 345677777764
No 107
>KOG2893|consensus
Probab=21.09 E-value=3.1e+02 Score=28.65 Aligned_cols=11 Identities=45% Similarity=1.096 Sum_probs=6.4
Q ss_pred CCCCCCCCCCC
Q psy1024 242 LPPHGMAAGHP 252 (514)
Q Consensus 242 ~nPHgm~a~HP 252 (514)
++|.||++.-|
T Consensus 150 ~~p~gmp~~~p 160 (341)
T KOG2893|consen 150 MPPRGMPGAYP 160 (341)
T ss_pred CCCCCCCCCCC
Confidence 56666655554
No 108
>KOG4848|consensus
Probab=21.07 E-value=1.1e+02 Score=30.61 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Q psy1024 473 KKKKKKKKKKKEEEEEEEEEKKKM 496 (514)
Q Consensus 473 kKkkKkkKKKKeeKkekeeEkKk~ 496 (514)
..++|++||+-++.|++++++|+.
T Consensus 196 qqkEkeekK~~KeaKrk~k~ekr~ 219 (225)
T KOG4848|consen 196 QQKEKEEKKAVKEAKRKEKQEKRF 219 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 109
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=20.36 E-value=50 Score=33.52 Aligned_cols=16 Identities=31% Similarity=0.169 Sum_probs=8.9
Q ss_pred hHHHHHHHHHhhhhhc
Q psy1024 356 REERLRKQAELKIKLF 371 (514)
Q Consensus 356 ree~~Rk~ae~~i~l~ 371 (514)
-.+.+.++++.+++..
T Consensus 194 hqelL~~a~~~E~~~~ 209 (387)
T PF07767_consen 194 HQELLAKAVEKEKKKE 209 (387)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4456666666655543
No 110
>PF01218 Coprogen_oxidas: Coproporphyrinogen III oxidase; InterPro: IPR001260 Coprogen oxidase (i.e. coproporphyrin III oxidase or coproporphyrinogenase) catalyses the oxidative decarboxylation of coproporphyrinogen III to proto-porhyrinogen IX in the haem and chlorophyll biosynthetic pathways [, ]. The protein is a homodimer containing two internally bound iron atoms per molecule of native protein []. The enzyme is active in the presence of molecular oxygen that acts as an electron acceptor. The enzyme is widely distributed having been found in a variety of eukaryotic and prokaryotic sources.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 3EJO_B 3DWR_B 1VJU_B 2QT8_B 3DWS_A 2AEX_A 1TKL_B 1TK1_A 1TLB_Q 1TXN_A ....
Probab=20.08 E-value=21 Score=36.65 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=21.5
Q ss_pred hhhhhcCCCceeeCCCCCCCCCCCCc
Q psy1024 428 MCNLLSRNPERIDTPRRRGGGGGGEE 453 (514)
Q Consensus 428 tyelLsrpgefihT~WtRGGGgggee 453 (514)
.+|.|+..+.|..+.|+|.+||||..
T Consensus 17 ~lE~~d~~~~F~~d~W~R~~gGgG~s 42 (296)
T PF01218_consen 17 ALEALDGKAKFKEDEWERPEGGGGRS 42 (296)
T ss_dssp HHHHHHSSSEEEEEEEEETTSEEEEE
T ss_pred HHHhhcCCCceEEcccccCCCCCceE
Confidence 46778888999999999987777643
Done!