RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1024
(514 letters)
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 67.0 bits (163), Expect = 1e-11
Identities = 41/72 (56%), Positives = 49/72 (68%), Gaps = 4/72 (5%)
Query: 291 EEEEIPSPPHHIPRGPSPEPKIEDSECHRSQSAIFLRHWNRGDYNSCCRTDLTFKPVPDS 350
EE E P PP PR PSPEP + ++ H SQSA F +H +RG YNSC RTDL F P+ S
Sbjct: 520 EEPESPPPP---PRSPSPEPTVVNTPSHASQSARFYKHLDRG-YNSCARTDLYFTPLASS 575
Query: 351 KLARKREERLRK 362
KLA+KREE + K
Sbjct: 576 KLAKKREEAVEK 587
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 50.0 bits (119), Expect = 2e-06
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 12/66 (18%)
Query: 446 GGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRR 505
GG GG+ EEEEE EEEEEE+E+++E EEEEEEEE ++ + + + R+
Sbjct: 856 GGSDGGDSEEEEEEEEEEEEEEEEEE------------EEEEEEEENEEPLSLEWPETRQ 903
Query: 506 RPKEFL 511
+ +L
Sbjct: 904 KQAIYL 909
Score = 35.7 bits (82), Expect = 0.062
Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 9/123 (7%)
Query: 374 VFLRHWNRGDYNSCCRTDLTFKPVPD----SKLARKREERLRKQAEREREEREKAQASMC 429
VF WN+ + L+ +PV L++ ER EE E+ +
Sbjct: 599 VFTMKWNK-QIELWVKEQLSRRPVAKVMALGDLSKGDVAEAEHTGERTGEEGERPTEAE- 656
Query: 430 NLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEE 489
N E + G + E E EGE E K +++ + + + K+ K E E E
Sbjct: 657 ---GENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAE 713
Query: 490 EEE 492
E E
Sbjct: 714 EVE 716
Score = 32.7 bits (74), Expect = 0.55
Identities = 25/82 (30%), Positives = 34/82 (41%)
Query: 411 RKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKK 470
+ + E E E K + E G GE E EEGEE E+E E +
Sbjct: 690 KGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEA 749
Query: 471 EKKKKKKKKKKKKEEEEEEEEE 492
E K + + + +KE E E E E
Sbjct: 750 EGKHEVETEGDRKETEHEGETE 771
Score = 31.9 bits (72), Expect = 1.1
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 407 EERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEE-----EGEE 461
E + + E + + + E + E E+E +GE
Sbjct: 786 GEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEA 845
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+++EK ++++EEEEEEEEE+++
Sbjct: 846 KQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEE 879
Score = 31.1 bits (70), Expect = 1.5
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 405 KREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEE 464
+ E +AE+E E K + N + P R G GE E E + + +
Sbjct: 658 ENGEESGGEAEQEGETETKGE---------NESEGEIPAERKGEQEGEGEIEAKEADHKG 708
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
E E ++ + + + + + ++E E E E+ +
Sbjct: 709 ETEAEEVEHEGETEAEGTEDEGEIETGEEGEE 740
Score = 31.1 bits (70), Expect = 1.7
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 434 RNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
R E + P G G E E E E E E K + + + + ++K ++E E E E ++
Sbjct: 644 RTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKE 703
Score = 30.7 bits (69), Expect = 2.4
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 413 QAEREREEREKAQASMCNLLSRNPE-RIDTPRRRGGGGGGEEEEEEEGE-EEEEEKEKKK 470
+A+ + E + + E D G G E E+E EGE E + E E +
Sbjct: 700 EAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEG 759
Query: 471 EKKKKKKKKKKKKEEEEEEEE 491
++K+ + + + + E +E+E+E
Sbjct: 760 DRKETEHEGETEAEGKEDEDE 780
Score = 28.8 bits (64), Expect = 8.3
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 437 ERIDTPRRRGGGGGGEEEEEEEGE-EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
ER R GE EE GE E+E E E K E + + + ++K E+E E E + K
Sbjct: 643 ERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAK 702
Score = 28.8 bits (64), Expect = 9.3
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 437 ERIDTPRRRGGGGGGEEEEEEEGE-EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
+ G G E E E E E EE + E++ + + K + + E E E K
Sbjct: 633 GDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERK 690
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 48.5 bits (116), Expect = 2e-06
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+EEE+EE EEE+ + K + KK K K ++KE+ + E+EEK
Sbjct: 38 DEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGL 81
Score = 48.1 bits (115), Expect = 4e-06
Identities = 15/48 (31%), Positives = 30/48 (62%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMM 499
EE+EE+E E+ + + K +K K K ++K+K + E+EE+ +++
Sbjct: 40 EEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEED 87
Score = 47.0 bits (112), Expect = 8e-06
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EEE+EE+ EE+ + K K KK K K ++K++ + E+EE+ +
Sbjct: 39 EEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLR 82
Score = 47.0 bits (112), Expect = 8e-06
Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 7/52 (13%)
Query: 451 GEEEEEEEGE--EEEEEKEKKKEK-----KKKKKKKKKKKEEEEEEEEEKKK 495
E+E+++ + +EEE++EK++EK K K KK K K EE+E+ + +K+
Sbjct: 26 DEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKE 77
Score = 32.3 bits (74), Expect = 0.49
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKK 481
E+ + EK K KKKK K K K
Sbjct: 193 EKLKAEKAAKGGKKKKGKAKAK 214
Score = 30.0 bits (68), Expect = 2.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 463 EEEKEKKKEKKKKKKKKKKKK 483
E+ K +K K KKKK K K
Sbjct: 193 EKLKAEKAAKGGKKKKGKAKA 213
Score = 30.0 bits (68), Expect = 2.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 462 EEEEKEKKKEKKKKKKKKKKKK 483
E+ + EK + KKKK K K K
Sbjct: 193 EKLKAEKAAKGGKKKKGKAKAK 214
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 49.8 bits (118), Expect = 3e-06
Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 2/157 (1%)
Query: 353 ARKREERLRKQAELKIKLFCPVFLRHWNRGDYNSCCRTDLTFKPVPDSKLARKREERLRK 412
A+ + E L+K E K K + + + + ++ A+K EE +K
Sbjct: 1618 AKIKAEELKKAEEEK-KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKK 1676
Query: 413 QAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEK 472
E ++ E ++ +A+ L E + +++ EE + EEE K K +E
Sbjct: 1677 AEEAKKAEEDEKKAAE-ALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEA 1735
Query: 473 KKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
KK+ ++ KKK EE +++EEEKKK+ + K+ ++ +E
Sbjct: 1736 KKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEE 1772
Score = 47.1 bits (111), Expect = 2e-05
Identities = 25/98 (25%), Positives = 47/98 (47%)
Query: 405 KREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEE 464
K+ E + +AE ++ E+ + E+ + + + EE ++ EE
Sbjct: 1613 KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE 1672
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKK 502
+K+K +E KK ++ +KK E ++E EE KK + KK
Sbjct: 1673 DKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKK 1710
Score = 42.8 bits (100), Expect = 4e-04
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 403 ARKREERLRK-QAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEE 461
A+K E +K + ER EE K + + +R I R + EE+++ +E
Sbjct: 1235 AKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADE 1294
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEE--EEEEEEKKKMMMMMKKIRRRPK 508
++ +EKKK + KKK ++ KK +E ++ EE KKK KK K
Sbjct: 1295 AKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKK 1343
Score = 42.8 bits (100), Expect = 5e-04
Identities = 25/111 (22%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
A+K+ E +K E +++ E +A + ++ + +++ E ++ +E +++
Sbjct: 1423 AKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAE----EAKKADEAKKK 1478
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLHR 513
EE +K E KKK ++ KKK +E ++ E KKK K + + +
Sbjct: 1479 AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKK 1529
Score = 42.4 bits (99), Expect = 6e-04
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 405 KREERLRK--QAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
K+ E ++K +A+++ EE +KA+ N R E + EE + +E
Sbjct: 1224 KKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADEL 1283
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
++ +EKKK + KK ++KKK +E +++ EE KK KK K+
Sbjct: 1284 KKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKK 1330
Score = 42.1 bits (98), Expect = 8e-04
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEE----EE 458
A+K+ + +K+AE ++ E A+A + + + ++EE +
Sbjct: 1327 AKKKADAAKKKAEEAKKAAEAAKAEA----EAAADEAEAAEEKAEAAEKKKEEAKKKADA 1382
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPK 508
+++ EEK+K E KKK ++ KKK +E ++ KKK KK + K
Sbjct: 1383 AKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK 1432
Score = 41.3 bits (96), Expect = 0.001
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Query: 404 RKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEE-----EE 458
+K EE + + +++ EE +KA+ L + E R EEE EE
Sbjct: 1552 KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE 1611
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
++ EE K K +E KK +++KKK ++ +++E EEKKK
Sbjct: 1612 AKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK 1648
Score = 40.5 bits (94), Expect = 0.002
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 400 SKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEG 459
++ A+ E +AE E+ E A+ ++ D +++ E+++ +E
Sbjct: 1345 AEAAKAEAEAAADEAEAAEEKAEAAEKKK----EEAKKKADAAKKKAE----EKKKADEA 1396
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPK 508
+++ EE +KK ++ KK KKK +E +++ EEKKK KK K
Sbjct: 1397 KKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKK 1445
Score = 40.1 bits (93), Expect = 0.004
Identities = 25/106 (23%), Positives = 49/106 (46%)
Query: 404 RKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEE 463
+K+ + +K+AE ++ E + + + + + + E E +E E
Sbjct: 1301 KKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAE 1360
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
+EK + +KKK++ KKK + +++ EEKKK KK K+
Sbjct: 1361 AAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
Score = 39.7 bits (92), Expect = 0.004
Identities = 24/143 (16%), Positives = 56/143 (39%), Gaps = 4/143 (2%)
Query: 353 ARKREERLRKQAELKIKLFCPVFLRHWNRGDYNSCCRTDLTFKPVPDSKLARKREERLRK 412
A+K E +K E + +R + R K K ++ +K
Sbjct: 1235 AKKDAEEAKKAEEERNN----EEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKK 1290
Query: 413 QAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEK 472
+A+ ++ EK +A + ++ D +++ + + ++ EE ++ + +
Sbjct: 1291 KADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKA 1350
Query: 473 KKKKKKKKKKKEEEEEEEEEKKK 495
+ + + + EE+ E EKKK
Sbjct: 1351 EAEAAADEAEAAEEKAEAAEKKK 1373
Score = 39.7 bits (92), Expect = 0.004
Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 401 KLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGE 460
KL + ++ ++A++ E + KA+ L + E + E+++ EE +
Sbjct: 1599 KLYEEEKKMKAEEAKKAEEAKIKAEE-----LKKAEEEKKKVEQLKKKEAEEKKKAEELK 1653
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEE---EEEEEEKKKMMMMMKKIRRRPKEFLHR 513
+ EEE + K ++ KK ++ KKK EE EE+E+K + + + E L +
Sbjct: 1654 KAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKK 1709
Score = 38.6 bits (89), Expect = 0.008
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 405 KREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEE 464
K+ E +K E ++ E +K A ++ E ++ + EE ++ EE
Sbjct: 1558 KKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE 1617
Query: 465 EKEK-----KKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRR 505
K K K E++KKK ++ KKKE EE+++ E+ K KI+
Sbjct: 1618 AKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKA 1663
Score = 38.2 bits (88), Expect = 0.013
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 403 ARKREERLRKQAEREREE-REKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEE 461
ARK E+ + +A ++ EE ++ A+ + RN E I + + EE
Sbjct: 1217 ARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEE 1276
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ E KK ++KKK + KK EE+++ +E KKK
Sbjct: 1277 ARKADELKKAEEKKKADEAKKAEEKKKADEAKKK 1310
Score = 37.8 bits (87), Expect = 0.017
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 403 ARKREERLRKQAER-EREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEE 461
A+K EE +K AE ++E E +A ++ ++ + EE + E
Sbjct: 1680 AKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEA 1739
Query: 462 EEEEK---EKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKK 502
EE++K E KK++++KKK KKEEE++ EE +K+ ++++
Sbjct: 1740 EEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
Score = 37.4 bits (86), Expect = 0.021
Identities = 20/107 (18%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 404 RKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEE-- 461
+ +K+ +++ + K +A ++ + +++ +++ +E
Sbjct: 1365 KAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAK 1424
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPK 508
++ E++KK ++ KKK ++ KK +E +++ EE KK KK K
Sbjct: 1425 KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
Score = 37.0 bits (85), Expect = 0.028
Identities = 20/93 (21%), Positives = 49/93 (52%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
A+K+ E +K E +++ E +A + ++ D +++ + +E ++ E
Sbjct: 1449 AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA 1508
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+++ ++ K+ ++ KK + KK EE ++ +E KK
Sbjct: 1509 KKKADEAKKAEEAKKADEAKKAEEAKKADEAKK 1541
Score = 36.3 bits (83), Expect = 0.042
Identities = 28/110 (25%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
A+K +E +K E +++ E +A+ + ++ + ++ EE ++ + ++
Sbjct: 1482 AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK 1541
Query: 463 EEEKEKKKEKKKK---KKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
EEK+K E KK KK ++KKK EE ++ EE K M + + ++ +E
Sbjct: 1542 AEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE 1591
Score = 36.3 bits (83), Expect = 0.046
Identities = 23/94 (24%), Positives = 45/94 (47%)
Query: 401 KLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGE 460
+ +K EE + +++ E K +A + ++ + +E E E +
Sbjct: 1306 EAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
E EK+K++ KKK KKK +E+++ +E +KK
Sbjct: 1366 AEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKK 1399
Score = 35.5 bits (81), Expect = 0.075
Identities = 24/118 (20%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
A+K+ E +K E +++ E +A + ++ D +++ +E +++ EE
Sbjct: 1436 AKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEA 1495
Query: 463 EEEKEKKKEKKKKKKK-------KKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLHR 513
+++ ++ K+ + KKK ++ KK +E ++ EE KK K ++ + L +
Sbjct: 1496 KKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK 1553
Score = 35.1 bits (80), Expect = 0.11
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 401 KLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRR-RGGGGGGEEEEEEEG 459
++ARK E+ + + R+ E+ +KA+A+ R E + R + EEE +
Sbjct: 1155 EIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKA 1214
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLHR 513
EE + ++ KK + KK ++ KK EE ++ EE++ + K R F R
Sbjct: 1215 EEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARR 1268
Score = 34.7 bits (79), Expect = 0.14
Identities = 35/115 (30%), Positives = 65/115 (56%), Gaps = 17/115 (14%)
Query: 401 KLARKREERLRKQAEREREEREKAQASMCNLLSR-NPERIDTPRRRGGGGGGEEEEEEEG 459
L ++ EE + + +++E EK +A N + + ++ EE++++
Sbjct: 1693 ALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE------AEEDKKKA 1746
Query: 460 EE---EEEEKEK----KKEKKKKKKKKKKKKE---EEEEEEEEKKKMMMMMKKIR 504
EE +EEEK+K KKE++KK ++ +K+KE EEE +EE++K+ M + KKI+
Sbjct: 1747 EEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIK 1801
Score = 34.7 bits (79), Expect = 0.14
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 20/110 (18%)
Query: 404 RKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEE-- 461
K+ E + A R+ EE +KA+ + + + E + + + EE + + EE
Sbjct: 1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYE--EEKKMKAEEAKKAEEAKIKAEELK 1626
Query: 462 -EEEEKEKKKEKKKKKKKKKKK----KEEEEE-----------EEEEKKK 495
EEEK+K ++ KKK+ ++KKK K+ EEE EE+KKK
Sbjct: 1627 KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKK 1676
Score = 33.6 bits (76), Expect = 0.34
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 13/108 (12%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
A+K EE+ + ++ EE +KA+ + E + EE ++ E
Sbjct: 1539 AKKAEEKKKADELKKAEELKKAEE-----KKKAEEAKKAEEDKNMALRKAEEAKKAEEAR 1593
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEE--------EEEEEKKKMMMMMKK 502
EE K E++KK K ++ KK EE + EEEKKK+ + KK
Sbjct: 1594 IEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKK 1641
Score = 33.6 bits (76), Expect = 0.36
Identities = 22/106 (20%), Positives = 51/106 (48%)
Query: 404 RKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEE 463
K+ + +K+AE ++ E + + + + ++ + EE ++ +E +
Sbjct: 1469 AKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAK 1528
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
+ +E KK + KK ++KKK +E ++ EE KK + ++ +E
Sbjct: 1529 KAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEE 1574
Score = 29.7 bits (66), Expect = 4.4
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 12/113 (10%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
A+K EE + ++ EE++KA L + E ++ + EE++
Sbjct: 1527 AKKAEEAKKADEAKKAEEKKKADE-----LKKAEELKKAEEKKKAEEAKKAEEDKNMALR 1581
Query: 463 EEEKEKKKEKKK-------KKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPK 508
+ E+ KK E+ + +++KK K EE ++ EE K K + K + K
Sbjct: 1582 KAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKK 1634
Score = 29.3 bits (65), Expect = 6.7
Identities = 23/107 (21%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
ARK EE + + R+ E+ KA+A+ + + + R+ E+ ++ E
Sbjct: 1181 ARKAEEVRKAEELRKAEDARKAEAAR---KAEEERKAEEARK--------AEDAKKAEAV 1229
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
++ +E KK+ ++ KK ++++ EE + EE + ++ + +E
Sbjct: 1230 KKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEE 1276
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 47.4 bits (113), Expect = 3e-06
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 25/97 (25%)
Query: 401 KLARKREERLRKQAE-REREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEG 459
KL K+ R +++AE EREER+K + E E +E
Sbjct: 10 KLEEKQARRQQREAEEEEREERKKLEEK------------------------REGERKEE 45
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
EE EEE+EKKKE++++K+++++ ++E+EE E+ K
Sbjct: 46 EELEEEREKKKEEEERKEREEQARKEQEEYEKLKSSF 82
Score = 42.4 bits (100), Expect = 2e-04
Identities = 17/58 (29%), Positives = 41/58 (70%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFL 511
++ E EEE EE++K +EK++ ++K++++ EEE E+++E+++ ++ R+ +E+
Sbjct: 19 QQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYE 76
Score = 40.1 bits (94), Expect = 8e-04
Identities = 19/57 (33%), Positives = 39/57 (68%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
+ ++ E EEEE+E++K+ ++K++ ++K++EE EEE E+KK+ ++ + KE
Sbjct: 15 QARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKE 71
Score = 35.1 bits (81), Expect = 0.047
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 467 EKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
KK+ K ++K+ +++++E EEEE EE+KK+ + R+ +E
Sbjct: 5 AKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEEL 48
Score = 32.7 bits (75), Expect = 0.22
Identities = 11/50 (22%), Positives = 26/50 (52%)
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLHR 513
K++ K ++K+ ++++++ EEEE EE +K + ++ E
Sbjct: 4 GAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEERE 53
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 49.1 bits (118), Expect = 3e-06
Identities = 18/44 (40%), Positives = 37/44 (84%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E++ EEE +E++++ K+K+++++++K+KKEEE+EEEEE+ +
Sbjct: 420 EKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463
Score = 48.0 bits (115), Expect = 8e-06
Identities = 29/96 (30%), Positives = 59/96 (61%), Gaps = 27/96 (28%)
Query: 400 SKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEG 459
SK A K+ +++ ++AE++REE +K ++++ G
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKE---------------------------KKKKAFAG 437
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+++EEE+E++KEKK+++K++++++ EEE+EEEE+KK
Sbjct: 438 KKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKK 473
Score = 44.9 bits (107), Expect = 7e-05
Identities = 21/47 (44%), Positives = 34/47 (72%)
Query: 449 GGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
G + ++ + E+ EK++++EKK+KKKK K++EEEEEEEK+K
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEK 450
Score = 44.9 bits (107), Expect = 7e-05
Identities = 20/40 (50%), Positives = 30/40 (75%)
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
+ E++ +E+KKEKKKK KKK+EEEEEE+E+K++
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454
Score = 44.5 bits (106), Expect = 1e-04
Identities = 18/47 (38%), Positives = 34/47 (72%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
G ++ ++ ++ E+ EKK+E++KK+KKKK +++EEEEE++K
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEK 450
Score = 44.1 bits (105), Expect = 1e-04
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 460 EEEEEE----KEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
EEE E +K +K KK +K +KK EEE++E++KK K+ ++
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEK 448
Score = 42.2 bits (100), Expect = 5e-04
Identities = 17/47 (36%), Positives = 34/47 (72%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
G ++ ++ + E+ ++K++E+KK+KKKK +++EEEEEE+K+
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEK 450
Score = 40.3 bits (95), Expect = 0.002
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 453 EEEEEE---GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EEE E G ++ +K KK +K +KK++++KKE++++ KKK
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKK 440
Score = 40.3 bits (95), Expect = 0.002
Identities = 14/45 (31%), Positives = 30/45 (66%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMM 498
++ + ++ EK +KK +++KK+KKKK +++EEEE+++
Sbjct: 406 KKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEK 450
Score = 37.2 bits (87), Expect = 0.020
Identities = 17/63 (26%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 452 EEEEE-----EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
EEE E ++ ++ ++ +K EKK++++KK+KKK+ +++E+++ KK +
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
Query: 507 PKE 509
+E
Sbjct: 456 EEE 458
Score = 36.8 bits (86), Expect = 0.022
Identities = 13/45 (28%), Positives = 29/45 (64%)
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
EK ++K++++KK+KKKK +++EE+++ K+ + +E
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEE 459
Score = 35.7 bits (83), Expect = 0.060
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 392 LTFKPVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGG 451
LT K+ + E+ +K+ E ++E+++KA A ++ +
Sbjct: 402 LTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGK--------KKEEEEEEEKEKKEE 453
Query: 452 EEEEEEEGEEEEEEKEKKKEKK 473
E+EEEEE EEE+E+E++K+KK
Sbjct: 454 EKEEEEEEAEEEKEEEEEKKKK 475
Score = 35.3 bits (82), Expect = 0.075
Identities = 11/44 (25%), Positives = 27/44 (61%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EEE E ++ +K K+ +K +KK++++++E++++ K
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGK 438
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 48.2 bits (115), Expect = 6e-06
Identities = 28/58 (48%), Positives = 41/58 (70%), Gaps = 4/58 (6%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
E E+E EEEEEEKE+KKE+++K K+++ +EEEE+EE+KKK KK++ E
Sbjct: 30 EVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKK----TKKVKETTTE 83
Score = 48.2 bits (115), Expect = 7e-06
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
+EEEE+ ++EEE E++++++KKKK KK K+ E E K K + R PK+
Sbjct: 47 KKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTKPIWT-----RNPKD 100
Score = 45.1 bits (107), Expect = 6e-05
Identities = 21/44 (47%), Positives = 37/44 (84%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E+E E+E +EEEE+EK+++K++++K K++E +EEEE+E+KK
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKK 71
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 47.4 bits (113), Expect = 1e-05
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 401 KLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGE 460
+ K E++ R++ ER E++ + A + L E + G ++E EG
Sbjct: 204 EKEVKAEKK-RQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWEGF 262
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKK 502
E E E K + K+K K ++ KE+ +E E + K +KK
Sbjct: 263 ESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKK 304
Score = 32.8 bits (75), Expect = 0.38
Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 395 KPVPDSKLARK-REERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEE 453
+ RK + +R +++ +E E K + + R+ +
Sbjct: 268 PINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQL-KKKLAQLARLKEIA---------K 317
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKK 482
E ++ + +KE++KE+ +KKK K++K
Sbjct: 318 EVAQKEKARARKKEQRKERGEKKKLKRRK 346
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 46.9 bits (112), Expect = 1e-05
Identities = 19/55 (34%), Positives = 36/55 (65%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
EEEE+ EEE +E+ +EKK++KKK++++ + + EE++K+ +K + R
Sbjct: 267 EEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQAR 321
Score = 41.5 bits (98), Expect = 6e-04
Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEE---EEEKKKMMMMMKKIRRR 506
EEEEE+ + EE+ +++ ++KK++KKK+++E + + EE++K KK R+
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 41.5 bits (98), Expect = 7e-04
Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 452 EEEEEE---EGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRR 505
EEEEE+ EEE +E+ ++K+++KKK++++ K + EE+ K + K+ R+
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 36.8 bits (86), Expect = 0.018
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 25/81 (30%)
Query: 403 ARKREER-LRKQAEREREE--REKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEG 459
R+ EE + K AE ER+E +EK + +++ EE E +
Sbjct: 264 TREEEEEKILKAAEEERQEEAQEKKEE----------------KKK------EEREAKLA 301
Query: 460 EEEEEEKEKKKEKKKKKKKKK 480
+ EE+ K +EK++KK+ +K
Sbjct: 302 KLSPEEQRKLEEKERKKQARK 322
Score = 35.7 bits (83), Expect = 0.050
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 34/77 (44%)
Query: 405 KREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEE 464
++EE K+ E+++EERE A +
Sbjct: 280 RQEEAQEKKEEKKKEEREAKLAKL----------------------------------SP 305
Query: 465 EKEKKKEKKKKKKKKKK 481
E+++K E+K++KK+ +K
Sbjct: 306 EEQRKLEEKERKKQARK 322
Score = 33.4 bits (77), Expect = 0.25
Identities = 11/41 (26%), Positives = 28/41 (68%)
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRR 505
+K +++E++K K +++++EE +E++E+KK K+ +
Sbjct: 262 DKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAK 302
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 45.1 bits (107), Expect = 3e-05
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 433 SRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
+ + +R+ G EEE+ +E E+K K+ E + ++ +K +EEEEEEEEE
Sbjct: 126 AGKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEE 185
Score = 29.0 bits (65), Expect = 4.5
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
E EE+ +EK EKK K+ + + EE+E++EEE++
Sbjct: 142 FTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEE 180
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 44.7 bits (106), Expect = 3e-05
Identities = 25/46 (54%), Positives = 33/46 (71%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E+E E EEE++EK+KKKE KK+KK+KK KKE+ E + KKK
Sbjct: 141 AKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKK 186
Score = 42.0 bits (99), Expect = 2e-04
Identities = 21/58 (36%), Positives = 42/58 (72%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
E E+E + E+E E ++E+KK+KKKKK+ K+E++E++++K+KM+ +++ K+
Sbjct: 133 ETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKK 190
Score = 41.6 bits (98), Expect = 3e-04
Identities = 22/70 (31%), Positives = 44/70 (62%)
Query: 440 DTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMM 499
D P G E+E + E+E + +++EKK+KKKKK+ KKE++E++++++K +
Sbjct: 122 DGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPK 181
Query: 500 MKKIRRRPKE 509
K +++ K+
Sbjct: 182 GSKKKKKKKK 191
Score = 40.5 bits (95), Expect = 8e-04
Identities = 22/60 (36%), Positives = 39/60 (65%)
Query: 449 GGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPK 508
+E + +E E E+E+KKEKKKKK+ KK+KKE+++++E+ + KK +++ K
Sbjct: 134 TSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 46.1 bits (110), Expect = 3e-05
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 453 EEEEEEGE-EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E EEEEGE E+KK +KK++K +KK ++EE E+ KKK
Sbjct: 395 EGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKK 438
Score = 41.8 bits (99), Expect = 7e-04
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
GEEEE E G E++K ++K++K +KK +K+E E+ ++K +
Sbjct: 396 GEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAE 440
Score = 36.1 bits (84), Expect = 0.040
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
E++ E+EE EK K+K + KK K + E ++ +
Sbjct: 421 AEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDP 458
Score = 36.1 bits (84), Expect = 0.045
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
G EEE E E K+ +K+++K +KK +K++ E+ +++ +
Sbjct: 396 GEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAE 440
Score = 34.1 bits (79), Expect = 0.18
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
E++ +EE E+ KK+ + KK K E ++ + +
Sbjct: 421 AEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPD 459
Score = 32.6 bits (75), Expect = 0.57
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
E++ E EE E+ KKK + KK K E ++ + +
Sbjct: 421 AEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPD 459
Score = 32.2 bits (74), Expect = 0.62
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
E++ E++E +K KKK + KK + + E +K
Sbjct: 422 EKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 32.2 bits (74), Expect = 0.74
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E++ EKE+ ++ KKK + K+ + + E KK
Sbjct: 421 AEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 31.8 bits (73), Expect = 0.80
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEE 486
E+EE E +++ E +K K + KK + +
Sbjct: 425 AEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPD 459
Score = 31.4 bits (72), Expect = 1.3
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEE 490
E++ E+ E E+ +KK E KK K + ++ + +
Sbjct: 421 AEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPD 459
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 43.4 bits (103), Expect = 4e-05
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMM 500
EEE E E +EEE+ ++ EK+ K K++K++E E +++E K+ M M+
Sbjct: 106 EEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQMKML 154
Score = 42.7 bits (101), Expect = 7e-05
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMM 500
EEEE E E +EEE+ + +K+ K K++K+ E E +++E K M M
Sbjct: 104 EEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQMKM 153
Score = 42.7 bits (101), Expect = 8e-05
Identities = 20/53 (37%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM-MMMKKI 503
EEEEEEE E EE ++E++ ++ +K+ K K+E+ E E ++K+++ MK +
Sbjct: 102 EEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQMKML 154
Score = 41.9 bits (99), Expect = 2e-04
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMK 501
+EEEEEE E EE E+++ + +K+ K K E+ E E K+K ++ +
Sbjct: 100 EKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQ 150
Score = 35.7 bits (83), Expect = 0.018
Identities = 13/54 (24%), Positives = 33/54 (61%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRR 505
+++E+ EEEEEE E ++ ++++ + +KE + + E++++ K+I +
Sbjct: 95 GLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILK 148
Score = 32.6 bits (75), Expect = 0.22
Identities = 12/49 (24%), Positives = 32/49 (65%)
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
+ +K+KE++++++ + ++ +EEE+ +E +K + +K+ +RR E
Sbjct: 92 KLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENE 140
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 43.2 bits (102), Expect = 6e-05
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
EE +E +E+ E + + ++KKK++ K K E+E+ + E KK
Sbjct: 102 EEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPK 147
Score = 42.4 bits (100), Expect = 1e-04
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E +E E E+ E K + KEKKK++ K K ++E+ + E +K K
Sbjct: 102 EEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPK 147
Score = 42.0 bits (99), Expect = 1e-04
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 445 RGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKE------EEEEEEEEKKK 495
R +EEEE E E +E +++ + K + K+KKK+E E+E+ + E KK
Sbjct: 89 RELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKK 145
Score = 35.9 bits (83), Expect = 0.018
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+E E+ + E + E K++KK++ K K +KE+ + E ++ K
Sbjct: 105 STDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKP 148
Score = 33.2 bits (76), Expect = 0.15
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
E+E+ + E +++KK+E K K +K+K K E ++ + K K+
Sbjct: 109 TEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPKL 153
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 42.6 bits (101), Expect = 6e-05
Identities = 18/56 (32%), Positives = 34/56 (60%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
E+E E+E+++K K+ KK++ + +++ +E E+EK+ KK +RR KE
Sbjct: 72 EKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKE 127
Score = 37.6 bits (88), Expect = 0.003
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKE 484
E E E+EK +K ++KK K+++K+KE
Sbjct: 100 RERTKERAEKEKRTRKNREKKFKRRQKEKE 129
Score = 33.0 bits (76), Expect = 0.12
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEE 488
E +E EK+K +K ++KK K++++E+E
Sbjct: 101 ERTKERAEKEKRTRKNREKKFKRRQKEKE 129
Score = 28.8 bits (65), Expect = 3.6
Identities = 9/32 (28%), Positives = 22/32 (68%)
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEE 489
E +E+ +K+++ +K ++KK K+ ++E+E
Sbjct: 98 LRRERTKERAEKEKRTRKNREKKFKRRQKEKE 129
>gnl|CDD|219461 pfam07543, PGA2, Protein trafficking PGA2. A Saccharomyces
cerevisiae member of this family (PGA2) is an ER protein
which has been implicated in protein trafficking.
Length = 139
Score = 42.5 bits (100), Expect = 8e-05
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 15/99 (15%)
Query: 401 KLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGE 460
KL K +E K+ E+ER ERE+A+ +I RGG G EE+ + E
Sbjct: 36 KLGAKAQE---KEHEKERAEREEARE--------KKAKISPNALRGGATAGHGEEDTDDE 84
Query: 461 EEEEEKEKK----KEKKKKKKKKKKKKEEEEEEEEEKKK 495
E+EE+ + KK +K+++K + E EE+ ++
Sbjct: 85 EDEEDFATPSAVPQWGKKARKRQRKVIRKLLEAEEQLRE 123
Score = 27.5 bits (61), Expect = 9.6
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 13/77 (16%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKK---------KKKKKKKKEEEEEEEEEKKKMMMMM- 500
G + +E+E E+E E+E+ +EKK K +++ ++EE+EE +
Sbjct: 38 GAKAQEKEHEKERAEREEAREKKAKISPNALRGGATAGHGEEDTDDEEDEEDFATPSAVP 97
Query: 501 ---KKIRRRPKEFLHRI 514
KK R+R ++ + ++
Sbjct: 98 QWGKKARKRQRKVIRKL 114
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 42.1 bits (99), Expect = 1e-04
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EE E+ ++E ++ ++KE K KK+KK+KKE++ E+ KKK
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKK 134
Score = 40.9 bits (96), Expect = 3e-04
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEE-----EEEEEKKKMMMMMKKIRR 505
EE E+E+ E +E +EK+ K KK+KK+KK+K+ E + + K K
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTT 151
Query: 506 RPKE 509
KE
Sbjct: 152 TKKE 155
Score = 37.4 bits (87), Expect = 0.006
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
++E +E EE+E K KK++K+KK+KK +K +++ + K KK + +E
Sbjct: 99 QKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKEE 156
Score = 30.5 bits (69), Expect = 1.2
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
++E++E+ E++ EK KK+ K K KK ++ ++E+ K
Sbjct: 115 KKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKEEGK 158
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 43.2 bits (103), Expect = 2e-04
Identities = 31/126 (24%), Positives = 62/126 (49%), Gaps = 22/126 (17%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
A++ +LR + E+E ER + L + E +D R+ EEE E+ E+E
Sbjct: 62 AKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLD---RKLELLEKREEELEKKEKE 118
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEE------EEKKKMMM-------------MMKKI 503
E+K+++ EKK+++ ++ +++ +E E EE K++++ ++K+I
Sbjct: 119 LEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEI 178
Query: 504 RRRPKE 509
KE
Sbjct: 179 EEEAKE 184
Score = 32.8 bits (76), Expect = 0.43
Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLHR 513
EE ++E E +K+ + K++ K + E E+E E + ++ + K++ ++ +E L R
Sbjct: 45 EEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQK-EENLDR 100
Score = 29.7 bits (68), Expect = 3.8
Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 33/120 (27%)
Query: 401 KLARKREERLRKQAEREREEREK-----AQASMCNL--------------LSRNPERIDT 441
K A + +R+ ++A++E E +K A+ + L L + +R+
Sbjct: 34 KEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRL-- 91
Query: 442 PRRRGGGGGGEE---EEEEEGEEEEEEKEKKKEKKKKKKK--KKKKKEEEEEEEEEKKKM 496
++ EE + E E+ EEE EKK+++ ++K++ +KK++E EE EE+ +++
Sbjct: 92 -LQK------EENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQEL 144
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 40.3 bits (95), Expect = 3e-04
Identities = 15/52 (28%), Positives = 32/52 (61%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKI 503
+++EE++ E E+ K +EK + + +K +K+ EE E E ++++ KK+
Sbjct: 26 KKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEAKKM 77
Score = 38.0 bits (89), Expect = 0.002
Identities = 13/51 (25%), Positives = 31/51 (60%)
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
+E + E+++E+KK + +K K +++ E E E+ +K++ + ++ RR
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARR 68
Score = 36.1 bits (84), Expect = 0.008
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
+E+ + E++++EKK E +K K ++K E E E+ EK+
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKE 57
Score = 36.1 bits (84), Expect = 0.009
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR----- 506
+ E+++E ++ E EK K ++K + + +K E+E EE E + + + ++
Sbjct: 23 KWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEAKKMLSEKG 82
Query: 507 -PKEFLHRI 514
P E L +
Sbjct: 83 LPVELLDLV 91
Score = 35.7 bits (83), Expect = 0.014
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
E E E+ +KE K K+K K +KK+EE++ E E+ KM
Sbjct: 1 EPEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKM 41
Score = 33.8 bits (78), Expect = 0.064
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
+E+ E+++E++K + +K K ++K E E E+ E++
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKE 57
Score = 30.7 bits (70), Expect = 0.75
Identities = 12/51 (23%), Positives = 28/51 (54%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLHR 513
+EK K ++K+++KK + +K + EE+ + ++ + K++ E R
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARR 68
Score = 29.1 bits (66), Expect = 2.2
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
E EE + +++ K K+K K +KK++E++ E E+ K
Sbjct: 1 EPEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAK 40
Score = 29.1 bits (66), Expect = 2.5
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEE-----EEEKKK 495
E EEE+ ++E + ++K K +KK+++K+ E E+ EEK +
Sbjct: 1 EPEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAE 48
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 41.6 bits (98), Expect = 3e-04
Identities = 14/65 (21%), Positives = 35/65 (53%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
+++ + + ++ +++K+K K+KK KK K +K++E+E E++ + + + E
Sbjct: 79 EEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSE 138
Query: 510 FLHRI 514
R
Sbjct: 139 LKPRK 143
Score = 40.4 bits (95), Expect = 6e-04
Identities = 15/43 (34%), Positives = 30/43 (69%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E EE++ + +++K KKK+ K K KK KK ++ E+++E++ +
Sbjct: 77 EYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAE 119
Score = 39.3 bits (92), Expect = 0.002
Identities = 17/44 (38%), Positives = 33/44 (75%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EE E+ +E EE+++ K +KKK KKKK K K+++++++++K +
Sbjct: 68 AEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSE 111
Score = 38.9 bits (91), Expect = 0.002
Identities = 18/43 (41%), Positives = 34/43 (79%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+E EE E+ ++E E+K++ K KKKK KKKK+++++++++KK
Sbjct: 65 KELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKD 107
Score = 38.1 bits (89), Expect = 0.004
Identities = 16/44 (36%), Positives = 32/44 (72%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E+ ++E E+++ + +KKK KKKK K K KK ++++++ E+K +
Sbjct: 72 EKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDE 115
Score = 34.7 bits (80), Expect = 0.061
Identities = 14/43 (32%), Positives = 32/43 (74%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+++E E E+ +KE ++++K K KKKK KK+++++++++ K
Sbjct: 63 KKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDK 105
Score = 30.8 bits (70), Expect = 1.1
Identities = 11/44 (25%), Positives = 29/44 (65%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E E + +++E +E +K KK+ ++K+K K ++++ ++++ K
Sbjct: 55 AEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKD 98
Score = 30.4 bits (69), Expect = 1.4
Identities = 17/107 (15%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
A+K+++ L ++ E+ ++E E+ Q + + +++++ E ++E
Sbjct: 60 AKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKK----KDKDKDKKDDKKDDKSEKKDE 115
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
+E ++K ++ K + E + + K + + R+R E
Sbjct: 116 KEAEDKLEDLTKSYSETLSTLSELKPRKYALHKDIYQSRLDRKRRAE 162
Score = 28.9 bits (65), Expect = 4.2
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKK 502
E E KK+KK+ ++ +K K+E EE+++ K K KK
Sbjct: 55 AEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKK 94
>gnl|CDD|216807 pfam01956, DUF106, Integral membrane protein DUF106. This
archaebacterial protein family has no known function.
Members are predicted to be integral membrane proteins.
Length = 168
Score = 41.1 bits (97), Expect = 3e-04
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEE--EEEKKKMMMMMKK 502
+ E+ + E+E +K ++ +K K KK E+ +EE E++K+ MM MMK
Sbjct: 41 KMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQEELMEDQKEMMMDMMKP 92
Score = 32.2 bits (74), Expect = 0.30
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 461 EEEEEKEKKKEKKKK-------KKKKKKKKEEEEEEEEEKKKMMMMMKKIR 504
+ E+ ++++KE +K+ K KK E+ +EE + + MMM ++
Sbjct: 41 KMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQEELMEDQKEMMMDMMK 91
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 43.1 bits (102), Expect = 3e-04
Identities = 20/54 (37%), Positives = 36/54 (66%), Gaps = 5/54 (9%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLHR 513
EE + EKE+K+ K++K+ +K KK+EE++++E +K ++K + P EF R
Sbjct: 551 EELQREKEEKEALKEQKRLRKLKKQEEKKKKELEK-----LEKAKIPPAEFFKR 599
Score = 38.1 bits (89), Expect = 0.010
Identities = 17/57 (29%), Positives = 40/57 (70%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
+++EE + E+EEKE KE+K+ +K KK+++++++E E+ +K + + +R+ ++
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFKRQEDKY 604
Score = 36.2 bits (84), Expect = 0.050
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 400 SKLARKREERLRKQAEREREEREKAQASMCN---LLSRNPERIDTPRRRGGGGGGEEEEE 456
+ +KR +L+KQ E++++E EK + + R ++ G +
Sbjct: 562 ALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFKRQEDKYSAFDET-----GLPTHD 616
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+GEE KKE+KK K+ K+ + EE + K
Sbjct: 617 ADGEE-----ISKKERKKLSKEYDKQAKLHEEYLAKGGK 650
Score = 34.2 bits (79), Expect = 0.18
Identities = 15/38 (39%), Positives = 28/38 (73%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEE 489
EE + E+ E+E +++K+ K KK+++KKKK+ E+ E+
Sbjct: 551 EELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 42.9 bits (101), Expect = 4e-04
Identities = 29/112 (25%), Positives = 41/112 (36%), Gaps = 41/112 (36%)
Query: 395 KPVPDSKLARKREERLRKQAEREREEREKAQASMC-NLLSRNPERIDTPRRRGGGGGGEE 453
KP+PD L R +C +L + ERID ++
Sbjct: 523 KPIPDKHLYR-----------------------LCWSLRNSTEERIDLD--------ADD 551
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKK---------KKKKKKEEEEEEEEEKKKM 496
E+E E E E E++K+ +K + K K EEEE K KM
Sbjct: 552 WTEDEDENEMETDEERKKPGCCRKAYNWFCGFDQGKAPKLTEEEEAALKMKM 603
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 42.4 bits (100), Expect = 6e-04
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 13/111 (11%)
Query: 404 RKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEE 463
+R ERL ++ E EE E+ + + L E + E+E EE EE E
Sbjct: 820 EQRRERLEQEIEELEEEIEELEEK-LDELEEELEEL------------EKELEELKEELE 866
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLHRI 514
E + +K+E + + K+ +++KEE EEE E + + +K+ + +E L +
Sbjct: 867 ELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEEL 917
Score = 37.0 bits (86), Expect = 0.027
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLL----SRNPERIDTPRRRGGGGGGEEEEEEE 458
A K E L+ + E REE E+ Q + L E R EE E E
Sbjct: 265 AEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERL-------EELENE 317
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKK 502
EE EE E+ KEK + K++ +++E EE E+ + K+
Sbjct: 318 LEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKE 361
Score = 36.2 bits (84), Expect = 0.050
Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 2/113 (1%)
Query: 399 DSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPE--RIDTPRRRGGGGGGEEEEE 456
+ + +R E L+++ E +EE E+ + + L E EE EE
Sbjct: 317 ELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEE 376
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
EE E + E + + + ++ K E E EE +++ ++ ++ KE
Sbjct: 377 LFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKE 429
Score = 35.5 bits (82), Expect = 0.091
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
++ E L + RE E+ + + L R E + EE EE E E
Sbjct: 293 LKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALK-----EELEERETLLE 347
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E E+ + ++ K++ ++K EE EE +
Sbjct: 348 ELEQLLAELEEAKEELEEKLSALLEELEELFEA 380
Score = 35.1 bits (81), Expect = 0.12
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 23/114 (20%)
Query: 401 KLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGE 460
K RK E L ++ R EE E+ Q + EE E+E E
Sbjct: 235 KELRKELEELEEELSRLEEELEELQEEL-----------------------EEAEKEIEE 271
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLHRI 514
+ E +E ++E ++ +++ + KEE EE E E + ++++ +E R+
Sbjct: 272 LKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERL 325
Score = 34.7 bits (80), Expect = 0.13
Identities = 24/112 (21%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 408 ERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGE----EEEEEEGEEEE 463
E ++ E E + + S+ +LL +++ R+ E EEE E+ +
Sbjct: 680 EAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRL 739
Query: 464 EEKEKKKEKKKKKKKK-KKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLHRI 514
EE E++ E+ +++ ++ +++ EE EEE E ++ + +K+ +E +
Sbjct: 740 EELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQAL 791
Score = 33.5 bits (77), Expect = 0.36
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 15/97 (15%)
Query: 404 RKREERLRKQAERE------REEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEE 457
K+ E+L +QAE+ + E + + + LL + + EEE
Sbjct: 199 EKQLEKLERQAEKAERYQELKAELRELELA---LLLAKLKELRKELEE------LEEELS 249
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
EEE EE +++ E+ +K+ ++ K + EE EE E+
Sbjct: 250 RLEEELEELQEELEEAEKEIEELKSELEELREELEEL 286
Score = 31.2 bits (71), Expect = 1.6
Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 401 KLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEE---- 456
+ ++ E L+++ EE E+ Q+ L E ++ E EEE
Sbjct: 712 EELERQLEELKRELAALEEELEQLQSR-LEELEEELEELEEELEELQERLEELEEELESL 770
Query: 457 -EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLHR 513
E + +EE E+ +EK++ +++ ++ EEE EE E + + + + +E L +
Sbjct: 771 EEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQ 828
Score = 30.8 bits (70), Expect = 2.0
Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 24/126 (19%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
+ L + +EE EK + + L ++ ER++ EE EEE +
Sbjct: 889 LEEELRELESELAELKEEIEKLRERLEELEAKL-ERLEVELP----ELEEELEEEYEDTL 943
Query: 463 EEEKEKKKEKKKK-------------------KKKKKKKKEEEEEEEEEKKKMMMMMKKI 503
E E E++ E+ ++ +++ ++ K + E+ EE K+K++ +++++
Sbjct: 944 ETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEEL 1003
Query: 504 RRRPKE 509
+ +E
Sbjct: 1004 DKEKRE 1009
Score = 29.7 bits (67), Expect = 5.0
Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 2/93 (2%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
E +++ E + + + L ++ EE + E E
Sbjct: 352 LLAELEEAKEELEEKLSALLEELEELFEALREELAELE--AELAEIRNELEELKREIESL 409
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EE E+ E+ + K++ K+ E E EE + + +
Sbjct: 410 EERLERLSERLEDLKEELKELEAELEELQTELE 442
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 42.0 bits (98), Expect = 6e-04
Identities = 30/111 (27%), Positives = 43/111 (38%), Gaps = 25/111 (22%)
Query: 400 SKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEG 459
+ R EE L + E R E E D +EE + +
Sbjct: 466 EETQRHSEEDLVNRFEDVRYEHV------------AGEEDDD---------DDEELQAQK 504
Query: 460 EEEEEEK----EKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
E E E + + E K K K KK + +EEEEEKK M+MM +++
Sbjct: 505 ELELEAQGIKYSETSEADKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKK 555
Score = 30.8 bits (69), Expect = 1.9
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 14/102 (13%)
Query: 407 EERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEK 466
+E L+ Q E E E AQ + S + ++ + + + + +EE EE++ +
Sbjct: 497 DEELQAQKELELE----AQGIKYSETSEADKDVNKSKNK------KRKVDEEEEEKKLKM 546
Query: 467 ----EKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIR 504
K+K+ KK K KKEE+ E ++KKK + KK+
Sbjct: 547 IMMSNKQKKLYKKMKYSNAKKEEQAENLKKKKKQIAKQKKLD 588
>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral
inhibitor of apoptosis (IAP)-associated factor (VIAF)
subfamily; VIAF is a Phd-like protein that functions in
caspase activation during apoptosis. It was identified
as an IAP binding protein through a screen of a human
B-cell library using a prototype IAP. VIAF lacks a
consensus IAP binding motif and while it does not
function as an IAP antagonist, it still plays a
regulatory role in the complete activation of caspases.
VIAF itself is a substrate for IAP-mediated
ubiquitination, suggesting that it may be a target of
IAPs in the prevention of cell death. The similarity of
VIAF to Phd points to a potential role distinct from
apoptosis regulation. Phd functions as a cytosolic
regulator of G protein by specifically binding to G
protein betagamma (Gbg)-subunits. The C-terminal domain
of Phd adopts a thioredoxin fold, but it does not
contain a CXXC motif. Phd interacts with G protein beta
mostly through the N-terminal helical domain.
Length = 192
Score = 40.7 bits (96), Expect = 6e-04
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
+EE EE E ++ + +KK + +EE +EEE+ + +++ RR+
Sbjct: 17 PPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDR----FLEEYRRK 67
Score = 37.6 bits (88), Expect = 0.007
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIR 504
+E EEE E ++ + +KK + +EE +EEE + + ++ R
Sbjct: 17 PPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEEYRRKR 68
Score = 36.1 bits (84), Expect = 0.021
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRR 505
+ + EEEE + +E + +KK E +EE +EE+ + + +R
Sbjct: 15 PKPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEEYRRKR 68
Score = 31.1 bits (71), Expect = 1.0
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKK----KKEEEEEE-EEEKKKMMMMMKKIRRR 506
+EEEE E +E + +KK + +EE++ EE ++K + MK + +
Sbjct: 19 SPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEEYRRKRLAEMKALAEK 78
Query: 507 PK 508
K
Sbjct: 79 SK 80
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called The
RES complex, pre-mRNA retention and splicing complex.
Subunits of this complex are not essential for viability
of yeasts but they are required for efficient splicing
in vitro and in vivo. Furthermore, inactivation of this
complex causes pre-mRNA leakage from the nucleus. Bud13
contains a unique, phylogenetically conserved C-terminal
region of unknown function.
Length = 141
Score = 39.6 bits (93), Expect = 7e-04
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMM 499
EE+ EE E E+EEKE+K+EK+K+ K +KEE E+ EE +K
Sbjct: 15 EEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNK 61
Score = 35.4 bits (82), Expect = 0.019
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 10/63 (15%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM----------MMMMK 501
EE+E E+ E+E +E+++K+ K +K++++K EE E+ + K + + +
Sbjct: 19 EEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYADDEDYDEELKE 78
Query: 502 KIR 504
+ R
Sbjct: 79 QER 81
Score = 30.7 bits (70), Expect = 0.71
Identities = 10/39 (25%), Positives = 27/39 (69%)
Query: 468 KKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
+ + ++K+++K+++KEE+E +EE++K+ + + R
Sbjct: 10 RIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEER 48
Score = 30.7 bits (70), Expect = 0.89
Identities = 10/35 (28%), Positives = 24/35 (68%)
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMM 499
+K + ++K+++K++++EE+E +EEK+K
Sbjct: 6 DKSGRIIDIEEKREEKEREKEEKERKEEKEKEWGK 40
Score = 30.0 bits (68), Expect = 1.3
Identities = 22/115 (19%), Positives = 46/115 (40%), Gaps = 38/115 (33%)
Query: 404 RKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEE--EGEE 461
EE+ ++ + E+ K EE+E+E +G
Sbjct: 12 IDIEEKREEKEREKEEKERK----------------------------EEKEKEWGKGLV 43
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK--------MMMMMKKIRRRPK 508
++EE+EK+ E+ +K K K + ++E+ +E+ K M ++K + +
Sbjct: 44 QKEEREKRLEELEKAKNKPLARYADDEDYDEELKEQERWDDPMAQFLRKKKEKTD 98
Score = 29.6 bits (67), Expect = 1.7
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 470 KEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
E+K+++K+++K+++E +EE+E++ ++ K+ R + E
Sbjct: 14 IEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLE 53
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 42.3 bits (99), Expect = 7e-04
Identities = 21/97 (21%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 400 SKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEG 459
+ +E + + E + E++ + SR + + + +E+E
Sbjct: 723 LLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSEL----SLKEKELA 778
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
EEEE+ ++ K E++K++K K +++E EEE K++
Sbjct: 779 EEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEA 815
Score = 41.5 bits (97), Expect = 0.001
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 401 KLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEE------ 454
KL + ++ L +E+ E E+ + L N ERID + E E
Sbjct: 202 KLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEL 261
Query: 455 --EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFL 511
EEE + +E ++++++KK ++++ K +EEEE + + + K +
Sbjct: 262 EKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKES 320
Score = 38.8 bits (90), Expect = 0.007
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 404 RKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEE 463
+E + ++ ++ +EE K A L +++ + E E+E + E+E
Sbjct: 271 VLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKE 330
Query: 464 EEKEKKK--EKKKKKKKKKKKKEEEEEEEEEKKK 495
+KEK++ E +K+ K+ + K+E EEEEEE+ +K
Sbjct: 331 LKKEKEEIEELEKELKELEIKREAEEEEEEQLEK 364
Score = 37.3 bits (86), Expect = 0.023
Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 7/159 (4%)
Query: 351 KLARKREERLRKQAELKIKLFCPVFLRHWNRGDYNSCCRTDLTFKPVPDSKLARKREERL 410
KL + ++ L + L + DY + +L R +E +
Sbjct: 202 KLKEQAKKALEYYQLKEKLELEEENLLY---LDYLKLNEERIDL----LQELLRDEQEEI 254
Query: 411 RKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKK 470
+ +E E + E+ EEE + E + E K +
Sbjct: 255 ESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDE 314
Query: 471 EKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
EK K+ +K+ KK E+E ++E+E+ + + K +E
Sbjct: 315 EKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKRE 353
Score = 36.9 bits (85), Expect = 0.032
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
E E +EE K++ K+++ +++KK+ +E EE + K+ +
Sbjct: 982 AEFEEKEERYNKDELKKERLEEEKKELLREIIEETCQRFKEFL 1024
Score = 36.1 bits (83), Expect = 0.050
Identities = 19/118 (16%), Positives = 41/118 (34%)
Query: 390 TDLTFKPVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGG 449
+ + + K E + + E E + + + E +
Sbjct: 905 EESQKDNLLEEKENEIEERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNK 964
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRP 507
+EE G + +EK+++ K + KKE EEE++E + ++ R +
Sbjct: 965 RLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIEETCQRFKE 1022
Score = 35.7 bits (82), Expect = 0.059
Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 4/110 (3%)
Query: 395 KPVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEE 454
K + K + ++ E+E E E+ + + P E+E
Sbjct: 895 KEKEEKKELEEESQKDNLLEEKENEIEER----IAEEAIILLKYESEPEELLLEEADEKE 950
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIR 504
+EE+ +EEEEE+ K+ K++ E EE+E++ +KK R
Sbjct: 951 KEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKER 1000
Score = 35.7 bits (82), Expect = 0.069
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
E + E + +E K K++ KK + + K+K E EEE + + ++
Sbjct: 188 ELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDL 242
Score = 34.6 bits (79), Expect = 0.17
Identities = 22/96 (22%), Positives = 47/96 (48%)
Query: 400 SKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEG 459
K ++ +E L+K + E + ++ + ++ + + ++E
Sbjct: 703 KKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEE 762
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EEEE+ + KEK+ ++++K +K + EEE+EEK K
Sbjct: 763 EEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLK 798
Score = 34.2 bits (78), Expect = 0.18
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
E E + EE + ++ K K++ KK + + +E+ E EE+
Sbjct: 184 ENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEN 226
Score = 34.2 bits (78), Expect = 0.21
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 400 SKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEG 459
S A+ +EE L + E E+E + + S E+ + + E EE E
Sbjct: 388 SSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVE-----ELEESLET 442
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
++ + +EK++ +K+ K K K E ++ E+ K+
Sbjct: 443 KQGKLTEEKEELEKQALKLLKDKLELKKSEDLLKET 478
Score = 33.8 bits (77), Expect = 0.25
Identities = 14/55 (25%), Positives = 32/55 (58%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
EEEEEE+ E+ +E+ E+ +E+ KKK + ++ + +E++ + ++ +
Sbjct: 355 EEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAK 409
Score = 33.0 bits (75), Expect = 0.41
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E + E + +E + K++ KK + + K++ E EEE
Sbjct: 187 AELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYL 230
Score = 33.0 bits (75), Expect = 0.51
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 18/94 (19%)
Query: 401 KLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGE 460
K+ ++EE+L+ Q E R E+ + L E+ E+ E
Sbjct: 788 KVEEEKEEKLKAQEEELRALEEELKEEAELLEE------------------EQLLIEQEE 829
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
+ +EE+ ++ + K+++K +K EEE E E++
Sbjct: 830 KIKEEELEELALELKEEQKLEKLAEEELERLEEE 863
Score = 32.2 bits (73), Expect = 0.76
Identities = 13/62 (20%), Positives = 29/62 (46%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFL 511
EE E + E+ K +E K K++ KK + + +E+ E ++ ++ + +E +
Sbjct: 181 EETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERI 240
Query: 512 HR 513
Sbjct: 241 DL 242
Score = 32.2 bits (73), Expect = 0.78
Identities = 12/75 (16%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 430 NLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEK--KKKKKKKKKKKEEEE 487
+ PER G + +++E ++ EE E E ++ K ++ K +E+
Sbjct: 147 IIAMMKPERRLEIEEEAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQ 206
Query: 488 EEEEEKKKMMMMMKK 502
++ + + +
Sbjct: 207 AKKALEYYQLKEKLE 221
Score = 31.9 bits (72), Expect = 1.0
Identities = 14/58 (24%), Positives = 32/58 (55%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
EEEEE+ + +E+ ++ ++E KKK + ++ + +EE+ ++ +K + E
Sbjct: 356 EEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLE 413
Score = 31.9 bits (72), Expect = 1.0
Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 3/108 (2%)
Query: 401 KLARKREERLRKQA-EREREEREKAQASMCNLLSRNPERIDTP--RRRGGGGGGEEEEEE 457
KL + EE L K+ E ER L E+ +EE++
Sbjct: 368 KLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKK 427
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRR 505
E + EE E+ E K+ K ++K++ E++ + K K+ + +
Sbjct: 428 EELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDLL 475
Score = 31.5 bits (71), Expect = 1.5
Identities = 19/99 (19%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 401 KLARKREERLRKQAEREREEREKAQASMCN--LLSRNPERIDTPRRRGGGGGGEEEEEEE 458
+ + ++ ++ + E +EK A + E + + +EEE
Sbjct: 753 EEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKA------QEEELRA 806
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
EEE +E+ + E+++ ++++K +EEE EE +
Sbjct: 807 LEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKE 845
Score = 31.5 bits (71), Expect = 1.5
Identities = 10/64 (15%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKK---KKKKKKKEEEEEEEEEKKKMMMMMKKIRRRP 507
E+ + +E ++ ++ E + ++ K +E + +E+ +K +K+
Sbjct: 164 AGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELE 223
Query: 508 KEFL 511
+E L
Sbjct: 224 EENL 227
Score = 30.7 bits (69), Expect = 2.1
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKE--EEEEEEEEKKKMMMMMKKIRRRPKE 509
E EEE E+ K+K++ KK ++ + + + EE + ++ K+ KK +
Sbjct: 158 EIEEEAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQL 216
Score = 29.9 bits (67), Expect = 4.1
Identities = 16/102 (15%), Positives = 41/102 (40%), Gaps = 12/102 (11%)
Query: 411 RKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKK 470
RK+ ER ++ E+ + NL + + + + +E+ + E + K+K
Sbjct: 170 RKKKERLKKLIEETE----NLAELIIDLEELKLQE------LKLKEQAKKALEYYQLKEK 219
Query: 471 EKKKKKK--KKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
+ +++ K EE + ++ + ++I +E
Sbjct: 220 LELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEL 261
Score = 29.6 bits (66), Expect = 5.7
Identities = 22/110 (20%), Positives = 53/110 (48%), Gaps = 7/110 (6%)
Query: 399 DSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEE 458
+ K+ K EE + + ++E EE EK++ S L + + + +EE+ +
Sbjct: 743 EQKIKEKEEEEEKSRLKKEEEEEEKSELS---LKEKELAEEEEKTEKLKVEEEKEEKLKA 799
Query: 459 GEEEEEEKEKKKEKKKKKKK----KKKKKEEEEEEEEEKKKMMMMMKKIR 504
EEE E++ +++ + + +++E+ +EEE E+ + + ++
Sbjct: 800 QEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKL 849
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 41.2 bits (97), Expect = 7e-04
Identities = 19/46 (41%), Positives = 21/46 (45%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EEE E EEE+ KKK+KKKKKK KK E
Sbjct: 164 PTEEEVELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSA 209
Score = 37.3 bits (87), Expect = 0.011
Identities = 17/47 (36%), Positives = 20/47 (42%)
Query: 449 GGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EE E + EEE +KKK+KKKKK KK E
Sbjct: 164 PTEEEVELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAV 210
Score = 35.8 bits (83), Expect = 0.037
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
EEE E + E+E+ K+KKKKKKKK KK E
Sbjct: 166 EEEVELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSS 208
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 41.7 bits (98), Expect = 7e-04
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
R E+R +K+ ++ E ++K A L ER+ ++ ++ EE +
Sbjct: 75 KRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQK------KQAEEAAKQAA 128
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
++K+ ++ K K K E E + K
Sbjct: 129 LKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAK 161
Score = 38.2 bits (89), Expect = 0.009
Identities = 18/93 (19%), Positives = 43/93 (46%), Gaps = 27/93 (29%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
A++ EE+ +K+ +++ EE ++ QA E+E ++
Sbjct: 74 AKRAEEQRKKKEQQQAEELQQKQA---------------------------AEQERLKQL 106
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E+E+ +E+KK+ ++ K+ ++++ EE
Sbjct: 107 EKERLAAQEQKKQAEEAAKQAALKQKQAEEAAA 139
Score = 34.0 bits (78), Expect = 0.15
Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 5/89 (5%)
Query: 405 KREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEE 464
KR K+A E +++ +A+A+ + E +++ E E +
Sbjct: 154 KRAAAAAKKAAAEAKKKAEAEAA-----KKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAK 208
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
+K + KKK + K + E +
Sbjct: 209 KKAAAEAKKKAAAEAKAAAAKAAAEAKAA 237
Score = 30.5 bits (69), Expect = 1.9
Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Query: 431 LLSRNPERIDTPRRRGGGGGGEE------EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKE 484
+ S E I+ GGGGGG + E+ +++++K K+ ++++KKK++
Sbjct: 30 IWSSFDENIEA---SGGGGGGSVIDAVMVDPGAVVEQYNRQQQQQKSAKRAEEQRKKKEQ 86
Query: 485 EEEEEEEEKK 494
++ EE ++K+
Sbjct: 87 QQAEELQQKQ 96
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 39.8 bits (94), Expect = 7e-04
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E E +++E K +K +KK +K K K ++++ ++EE K +
Sbjct: 56 ESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 34.8 bits (81), Expect = 0.037
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 443 RRRGGGGGGE-------EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
++ G GE EE ++ E E KKE K +K +KK ++ + + E++K K
Sbjct: 32 AQKKKGKKGELEITDLNEEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAK 91
Score = 30.6 bits (70), Expect = 0.91
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKK 483
+E + E E++ EK K K +KKK KK++ K
Sbjct: 66 KELKAWEKAEKKAEKAKAKAEKKKAKKEEPKP 97
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 41.8 bits (98), Expect = 8e-04
Identities = 26/169 (15%), Positives = 46/169 (27%), Gaps = 12/169 (7%)
Query: 6 HSSSSVTTRMREEDAQEIMHHSSHHSSSVHHHSEHSKQTISHSTSSSATSVQHKMKR--G 63
HS S + E HHS + HHS S S +++
Sbjct: 240 HSLSKSSNSQTPELEYSEKGKDHHHSHNHQHHSIGINNHHSKHADSKLQTIEVIENHSNK 299
Query: 64 TSPALSQAG-----LSHVASATLSQTTSSSVSTNHGPQSHSHHHQHSHHHHHQTATASPP 118
+ P+ S S+ +SA S S + + + H + P
Sbjct: 300 SRPSSSSTNGSKETTSNSSSAAAGSIGSKSSKSAKHSNRNKSNSSPKSHSS--ANGSVPS 357
Query: 119 ASAISGSKSRGIGDPIPNHILLSEHKPRPSESQSSSSAQPP---SSSPD 164
+S + + S+ + + P S+P
Sbjct: 358 SSVSDNESKQKRASKSSSGARDSKKDASGMSANGTVENCIPENKISTPS 406
Score = 29.1 bits (65), Expect = 6.2
Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 7/117 (5%)
Query: 50 SSSATSVQHKMKRGTSPALSQAGLSHVASATLSQTTSSSVSTNHGPQSHSHHHQHSHH-- 107
S A+S + P + G ++ ++ SQT S HSH+HQH
Sbjct: 216 KSEASSKGLTSTKELVPVQNSGGNHSLSKSSNSQTPELEYSEKGKDHHHSHNHQHHSIGI 275
Query: 108 --HHHQTATASPPASAISGSKSRGIGDPIPNHILLSEHKPRPSESQSSSSAQPPSSS 162
HH + A + + + S P+ + K S S S+++ S S
Sbjct: 276 NNHHSKHADSKLQTIEVIENHSNK---SRPSSSSTNGSKETTSNSSSAAAGSIGSKS 329
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 40.5 bits (95), Expect = 8e-04
Identities = 14/53 (26%), Positives = 33/53 (62%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIR 504
E +EE++G+EE+ E E+ ++++ + ++ + + EE ++E K+ KK+
Sbjct: 22 ENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLE 74
Score = 39.4 bits (92), Expect = 0.002
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMK 501
+E E + E++ +E++ + E+ +K++ + +E E + EE K +K
Sbjct: 18 CKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLK 67
Score = 33.6 bits (77), Expect = 0.16
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+E ++ + E EE+ K+ E K++ K K++ E EE E+EE +
Sbjct: 3 KECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIE 46
Score = 32.4 bits (74), Expect = 0.42
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
EE E+EE E+ EE + K ++ K + K K+E ++ E E
Sbjct: 37 EEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLENE 76
Score = 31.6 bits (72), Expect = 0.76
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E+E + + E E+ K+ + K++ K KEE+ E EE +K+
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKE 42
Score = 31.3 bits (71), Expect = 0.87
Identities = 15/55 (27%), Positives = 33/55 (60%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
+EE+ E EE E+E+ + ++ + K ++ K+E + +EE KK+ ++ ++ R
Sbjct: 29 GKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLENELEALKDR 83
Score = 29.0 bits (65), Expect = 5.5
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E+E ++ + E E++ KE + K++ K K+++ E EE E+++
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEI 44
Score = 28.2 bits (63), Expect = 8.4
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
E+EE E EE E + ++ K + K K++ K+ E E E K ++
Sbjct: 40 EKEEIIEDSEESNEVKIEELKDENNKLKEENKKLENELEALKDRL 84
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 40.5 bits (95), Expect = 0.001
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 448 GGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
E E EE +EEE+E ++K+ K +K+ +E EEE EEE
Sbjct: 54 SDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEED 99
Score = 38.9 bits (91), Expect = 0.002
Identities = 13/45 (28%), Positives = 30/45 (66%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+EEE+E E++E + EK+ ++ +++ ++E+EE +E +K+
Sbjct: 65 VKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKE 109
Score = 38.2 bits (89), Expect = 0.005
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 431 LLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEE 490
+P + ++E E E +EEEKE + K+ K +K++EE EEE
Sbjct: 35 FFPSSPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEE 94
Query: 491 EEKKK 495
E++
Sbjct: 95 NEEED 99
Score = 37.8 bits (88), Expect = 0.007
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E +EEE+ E+KE K + +K+ ++ +++ EEE+EE ++ +
Sbjct: 64 EVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENE 107
Score = 36.3 bits (84), Expect = 0.020
Identities = 14/42 (33%), Positives = 27/42 (64%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
E++ + E E+EE E+E ++E ++ + +K+ EE+ E EK
Sbjct: 79 EDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEK 120
Score = 36.3 bits (84), Expect = 0.021
Identities = 12/41 (29%), Positives = 30/41 (73%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
E++E++G+ E+E++E ++E +++ ++ + E+E EE+ E
Sbjct: 75 SEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTE 115
Score = 36.3 bits (84), Expect = 0.022
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
EE +EEE E E ++ K +K+ ++ +++ EEE+EE +
Sbjct: 63 EEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENE 107
Score = 36.3 bits (84), Expect = 0.022
Identities = 13/44 (29%), Positives = 30/44 (68%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
++E++ + E+E+EE E++ E++ ++ + +KE EE+ E +K
Sbjct: 77 DKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEK 120
Score = 35.9 bits (83), Expect = 0.028
Identities = 9/46 (19%), Positives = 28/46 (60%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E E+ E++ + +++ +E +++ +++ ++ +E E+E E+K
Sbjct: 69 EKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKT 114
Score = 30.9 bits (70), Expect = 1.2
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
G+ E+E+E EEE E+E ++ + +K+ ++K E E+E
Sbjct: 81 KGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPS 126
>gnl|CDD|177433 PHA02608, 67, prohead core protein; Provisional.
Length = 80
Score = 37.8 bits (88), Expect = 0.001
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
EGEE E++ + + + K K +++++E++E
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 34.8 bits (80), Expect = 0.010
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEE 487
E EE E ++++E+ + +K K E++E
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 34.0 bits (78), Expect = 0.024
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKE 484
GEE E+++ +E++++ + K +K + E
Sbjct: 47 GEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 33.6 bits (77), Expect = 0.034
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEE 488
E EE +++++E + + K K +E++E
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 33.2 bits (76), Expect = 0.035
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEE 489
E EE E+++++++ + K K ++E++E
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 31.7 bits (72), Expect = 0.13
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEE 486
E EE E+ +++E++ + + K +++E
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 30.5 bits (69), Expect = 0.37
Identities = 6/33 (18%), Positives = 18/33 (54%)
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
E EE ++ ++ K K++++++++E
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDED 78
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 41.3 bits (97), Expect = 0.001
Identities = 14/41 (34%), Positives = 28/41 (68%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
EE + +EEK K++E +KK+K++ + +E+ +++E KK
Sbjct: 394 ASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 40.9 bits (96), Expect = 0.001
Identities = 15/44 (34%), Positives = 32/44 (72%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E ++E + EE + K KE+K K+++ +KK++E+ +E++EK++
Sbjct: 385 LGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQ 428
Score = 40.9 bits (96), Expect = 0.001
Identities = 14/44 (31%), Positives = 33/44 (75%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E + EE E + +E++ K+E+ +KK+K++ +++E+ +++E+KK
Sbjct: 391 ETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 40.2 bits (94), Expect = 0.002
Identities = 16/44 (36%), Positives = 32/44 (72%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E ++E EE E + K+EK K+++ +KK+KE+ +E++E+++K
Sbjct: 386 GEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQK 429
Score = 39.4 bits (92), Expect = 0.003
Identities = 12/44 (27%), Positives = 32/44 (72%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+E + E E + ++EK K+++ +KK+K++ E++E+ +++++K
Sbjct: 390 DETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERK 433
Score = 36.3 bits (84), Expect = 0.035
Identities = 15/44 (34%), Positives = 33/44 (75%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
GE ++E + EE E K K+++ K+++ +KK+K++ +E++E+ +K
Sbjct: 386 GEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQK 429
Score = 35.2 bits (81), Expect = 0.090
Identities = 12/44 (27%), Positives = 31/44 (70%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
++ E + E + E+ + K K++K K+++ +K+++E+ +E+K+K
Sbjct: 383 KKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEK 426
Score = 34.8 bits (80), Expect = 0.097
Identities = 11/45 (24%), Positives = 24/45 (53%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
G++ +E E ++ ++ K+ + K + +E E + +EEK K
Sbjct: 364 GDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLK 408
Score = 34.4 bits (79), Expect = 0.13
Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 20/72 (27%)
Query: 405 KREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEE 464
K+ ++ + + E KA+ E++ EE E+++ E+ +E
Sbjct: 383 KKLGEVKDETDASEEAEAKAKE----------EKLKQ----------EENEKKQKEQADE 422
Query: 465 EKEKKKEKKKKK 476
+KEK+++ ++KK
Sbjct: 423 DKEKRQKDERKK 434
Score = 33.2 bits (76), Expect = 0.36
Identities = 11/42 (26%), Positives = 28/42 (66%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
++ ++ E ++E + +E + K K++K K+EE E++++E+
Sbjct: 379 QDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQA 420
Score = 32.5 bits (74), Expect = 0.51
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+E ++ + ++ E K E ++ + K KEE+ ++EE +KK
Sbjct: 372 KEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKK 415
Score = 31.3 bits (71), Expect = 1.2
Identities = 9/44 (20%), Positives = 27/44 (61%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
++ ++ + E + E ++ + K K++K ++EE E+++K++
Sbjct: 376 KKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQ 419
Score = 30.9 bits (70), Expect = 1.6
Identities = 9/44 (20%), Positives = 28/44 (63%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
++ ++ ++ E K++ ++ + K K++K ++EE E+++K+
Sbjct: 375 NKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKE 418
Score = 28.6 bits (64), Expect = 9.7
Identities = 10/56 (17%), Positives = 28/56 (50%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
++ +E +E +K + KK + K + EE E + +++K+ + +++ +
Sbjct: 365 DKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQA 420
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 41.2 bits (97), Expect = 0.001
Identities = 26/142 (18%), Positives = 47/142 (33%), Gaps = 35/142 (24%)
Query: 401 KLARKREERLRKQAEREREEREKAQASMCNL----------------------------- 431
K+E+ L + + E R+K + NL
Sbjct: 300 NKLEKQEDELEELEKAAEELRQKGELLYANLQLIEEGLKSVRLADFYGNEEIKIELDKSK 359
Query: 432 -LSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEE 490
S N +R ++ G + + E +E E K +K + K+ EE
Sbjct: 360 TPSENAQRYFKKYKKLKG---AKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIR 416
Query: 491 EEK--KKMMMMMKKIRRRPKEF 510
EE + ++ KK R++ + F
Sbjct: 417 EELIEEGLLKSKKKKRKKKEWF 438
Score = 38.5 bits (90), Expect = 0.008
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKK 483
G++ EE EE EE K +KKK+KKK+ +K
Sbjct: 408 GKKAIEEIREELIEEGLLKSKKKKRKKKEWFEK 440
Score = 35.8 bits (83), Expect = 0.058
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEE 487
+ E ++ EE EE ++ K KKKK+KKK+ E+
Sbjct: 405 KAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEK 440
Score = 33.9 bits (78), Expect = 0.23
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E+ E ++ ++ E EKK EK+ KK + K +K+E+E EE EK
Sbjct: 273 EKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAA 316
Score = 32.7 bits (75), Expect = 0.47
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEE 488
E+ E ++ EE E+ ++ K KKKK+KKKE E+
Sbjct: 404 EKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEK 440
Score = 32.4 bits (74), Expect = 0.57
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEE 489
E+ E + EE +E +E K KKKK+KK+E E+
Sbjct: 403 LEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEK 440
Score = 32.0 bits (73), Expect = 0.96
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
++ E++ EKE KK + K +K++ + +E E+ EE ++K
Sbjct: 281 KQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQK 322
Score = 31.6 bits (72), Expect = 1.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEE 490
E+ E + EE +E+ E+ K KKKK+K++E E+
Sbjct: 403 LEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEK 440
Score = 31.2 bits (71), Expect = 1.6
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
E+ EG++ EE ++ ++ K KKKK++++E E+
Sbjct: 403 LEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEK 440
Score = 30.4 bits (69), Expect = 2.5
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
++ E E++ E++ KK E K +K++ + ++ E+ EE +K
Sbjct: 281 KQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQK 322
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 41.2 bits (97), Expect = 0.001
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 16/107 (14%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
E LR++ E E E E+ + P + + RR+ G E GE+E
Sbjct: 390 NDAEIEELRRELEGEEESDEE--------ENEEPSKKNVGRRKFG--------PENGEKE 433
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
E K+ KKE K + K+KK+ EEEE E+EE+ K+ + K+ +R ++
Sbjct: 434 AESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEK 480
Score = 37.3 bits (87), Expect = 0.018
Identities = 23/98 (23%), Positives = 42/98 (42%)
Query: 412 KQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKE 471
K +E++E ++ + ++ + + +R EEEEEE EE K
Sbjct: 444 KNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSSV 503
Query: 472 KKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
K KK+ KKK + ++ K +K +++ KE
Sbjct: 504 GKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKE 541
Score = 33.5 bits (77), Expect = 0.32
Identities = 14/61 (22%), Positives = 33/61 (54%)
Query: 445 RGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIR 504
+ E+E+ + EE+E++ E + + +KK + +E E++E+ ++ MK ++
Sbjct: 321 KSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRKKLGKLKEGEDDEENSGLLSMKFMQ 380
Query: 505 R 505
R
Sbjct: 381 R 381
Score = 32.0 bits (73), Expect = 0.96
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 9/49 (18%)
Query: 452 EEEEEEEGEEEEEEKEKK---------KEKKKKKKKKKKKKEEEEEEEE 491
+++E +E ++++E+K K EKKK +KKK + EE +E E
Sbjct: 3 DDDESDEEDDDDEDKHSKLLSAISSLGGEKKKDEKKKADRSEESGKESE 51
Score = 29.6 bits (67), Expect = 4.4
Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 6/103 (5%)
Query: 393 TFKPVPDSKLARKREERLRKQAERE------REEREKAQASMCNLLSRNPERIDTPRRRG 446
FK +S + E+ + E+ R E+ + + L NP T
Sbjct: 446 EFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGK 505
Query: 447 GGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEE 489
+ +++ + ++ + K K KKKKKK+K + ++
Sbjct: 506 SAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDD 548
Score = 28.5 bits (64), Expect = 9.6
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 9/49 (18%)
Query: 453 EEEEEEGEEEEEEKEKKKEK---------KKKKKKKKKKKEEEEEEEEE 492
+++E +EE+++ E K K +KKK +KKK + EE +E
Sbjct: 1 MSDDDESDEEDDDDEDKHSKLLSAISSLGGEKKKDEKKKADRSEESGKE 49
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 41.0 bits (96), Expect = 0.001
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Query: 395 KPVPDSKLARKREERLRK-QAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEE 453
KP + K +EE K Q + E++++++ E + + E+
Sbjct: 93 KPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEK 152
Query: 454 EEEEEGEEEEE-----EKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
+ EE + EEE + K + KK KKK KK+E EEE++++
Sbjct: 153 KVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAR 201
Score = 39.9 bits (93), Expect = 0.003
Identities = 23/67 (34%), Positives = 40/67 (59%)
Query: 443 RRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKK 502
R GG G + + +E + E K++EK+K++ K++KKK++E+ +EE K + K
Sbjct: 79 RVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAK 138
Query: 503 IRRRPKE 509
+R PKE
Sbjct: 139 EKRPPKE 145
Score = 38.3 bits (89), Expect = 0.009
Identities = 19/101 (18%), Positives = 41/101 (40%)
Query: 395 KPVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEE 454
K K K E++ +K+ +E + K + + + ++ EEE
Sbjct: 104 KEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEE 163
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
++ E + +K +KK KKK+ +EE++ + +
Sbjct: 164 KKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAV 204
Score = 34.1 bits (78), Expect = 0.17
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 25/110 (22%)
Query: 389 RTDLTFKPVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGG 448
R + P +K +E + E E+E+ + ++
Sbjct: 79 RVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQV-----------------KEEKKKK- 120
Query: 449 GGGEEEEEEEGEEEEEEKEKKKEKKKKKKK---KKKKKEEEEEEEEEKKK 495
+E+ +E ++ + KE+ KEK+ K+K K+KK EE + EEEKK+
Sbjct: 121 ----KEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKR 166
Score = 30.2 bits (68), Expect = 2.6
Identities = 19/105 (18%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 395 KPVPDSKLARKREERLRK---QAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGG 451
+ K K E + RK +A+ +R +EK + + + R R
Sbjct: 115 EEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSR 174
Query: 452 EEEEEEEGEEE-EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
++ ++ ++E +++++++ ++ K K EE + EE++K
Sbjct: 175 PKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREK 219
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 41.2 bits (97), Expect = 0.001
Identities = 31/160 (19%), Positives = 60/160 (37%), Gaps = 23/160 (14%)
Query: 342 LTFKPVPDSKLARKREERLRKQAELKIKLFCPVFLRHWNRGDYNSCCRTDLTFKPVPDSK 401
+ FK + K + E E Y+ +
Sbjct: 1046 VRFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIWS------- 1098
Query: 402 LARKREERLRKQAEREREEREKAQASMCNLLSRNPERI-----DTPRRRGGGGGGEEEEE 456
L +++ E+L + E++ +E EK L + P+ + D E+EE
Sbjct: 1099 LTKEKVEKLNAELEKKEKELEK-------LKNTTPKDMWLEDLDKFEEALE----EQEEV 1147
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
EE E +E++ K K K K K +K K +++E+++++
Sbjct: 1148 EEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSAD 1187
Score = 28.9 bits (65), Expect = 9.9
Identities = 34/177 (19%), Positives = 61/177 (34%), Gaps = 10/177 (5%)
Query: 345 KPVPDSKLARKREERLRKQAELKIKLFCPVFLRHWNRGDYNSCCRTDLTFKPVPDSKLAR 404
SK A R ++ K KL + N + + KP S
Sbjct: 1184 SSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRL 1243
Query: 405 KREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEE 464
K ++ ++ + +E S P+R+ + + E G +
Sbjct: 1244 KSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPS 1303
Query: 465 EKEKKKEKKKKKKK--KKKKKEEEEEEEEEKKKMMMMMKK--------IRRRPKEFL 511
KKK KK+ + KKK++ E++ KKK +K+ + RRP++
Sbjct: 1304 SPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKK 1360
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 40.2 bits (94), Expect = 0.002
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 404 RKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEE 463
++R+++L +QAE ++R QA L R + E+ ++ EE++
Sbjct: 67 QERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQ--------AEQAAKQAEEKQ 118
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
++ E+ K K+ + K K + E E++ +EE KK
Sbjct: 119 KQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKK 150
Score = 38.7 bits (90), Expect = 0.006
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 27/93 (29%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
A K+E+ +K+ E++ EE EK +A E+ +E
Sbjct: 62 AAKKEQERQKKLEQQAEEAEKQRA---------------------------AEQARQKEL 94
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E+ +K K+ ++ K+ +E++++ EE K K
Sbjct: 95 EQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAK 127
Score = 38.3 bits (89), Expect = 0.007
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 15/93 (16%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
A K+ E +KQAE + ++ E + +EE ++ EE
Sbjct: 110 AAKQAEEKQKQAEEAKAKQAAEAK-------AKAEAEAEKK--------AKEEAKKQAEE 154
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E + + E KKK + KKK E E + + E K
Sbjct: 155 EAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKA 187
Score = 37.9 bits (88), Expect = 0.010
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 16/97 (16%)
Query: 401 KLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGE 460
+ +K +E +KQAE E + + A+A +++ + E E + +
Sbjct: 139 EAEKKAKEEAKKQAEEEAKAKAAAEA----------------KKKAAEAKKKAEAEAKAK 182
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
E + K K +E K K + K K E + E +
Sbjct: 183 AEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAA 219
Score = 34.0 bits (78), Expect = 0.18
Identities = 8/46 (17%), Positives = 28/46 (60%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
++E+E ++ E++ E+ ++++ ++ ++K+ E+ E+ K+
Sbjct: 61 PAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQ 106
Score = 29.4 bits (66), Expect = 5.0
Identities = 9/41 (21%), Positives = 29/41 (70%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+++ ++E+E++KK E++ ++ +K++ E+ ++E E++
Sbjct: 58 QKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRA 98
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 40.0 bits (94), Expect = 0.002
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
E ++E E + E+E+EK + KK K+ ++ EE+EEE +++
Sbjct: 122 ESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEA 167
Score = 38.5 bits (90), Expect = 0.007
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+E E + E+EEE+ E K+ K+ ++ +++EEE EEE+ +
Sbjct: 124 DKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAE 168
Score = 36.6 bits (85), Expect = 0.021
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
E E + +EEE+++ KK K+ ++ ++ EEE EEEE +
Sbjct: 124 DKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAE 168
Score = 36.2 bits (84), Expect = 0.032
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMK 501
E+EEE+ E ++ KE E+ ++ +++ +EEE E E+EK + +
Sbjct: 132 SEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKASELATTR 181
Score = 36.2 bits (84), Expect = 0.034
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 449 GGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E + E EEE++E KK ++ ++ ++ +EE EEEE + +
Sbjct: 124 DKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAE 170
Score = 35.0 bits (81), Expect = 0.077
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
G + E + E E + E ++EK + KK K+ +EE EE+E++
Sbjct: 116 GEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEA 161
Score = 29.2 bits (66), Expect = 4.6
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 18/111 (16%)
Query: 399 DSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEE 458
D L K + R + ER +E A + I+ P ++ ++ +EE
Sbjct: 201 DKALGGKLKRRDKDAPERHSDELVDA------------DDIEGPAKKK-----KQTKEER 243
Query: 459 GEEEEEEKEKKKE-KKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPK 508
+E +E +++ +K KK K+ K +E+ KK MM + K R R K
Sbjct: 244 IATAKEGREDREKFGSRKGKKDKEGKSTTNKEKARKKNFMMTLHKKRVRGK 294
>gnl|CDD|218899 pfam06102, DUF947, Domain of unknown function (DUF947). Family of
eukaryotic proteins with unknown function.
Length = 168
Score = 38.4 bits (90), Expect = 0.003
Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 16/115 (13%)
Query: 404 RKRE-ERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
R++E E L K ++ ++ EK + + L R+ T + + + E E E +
Sbjct: 61 REKEIEELEKALKKTKDSEEKEE--LKRTLQSMKSRLKTLKNK------DREREILKEHK 112
Query: 463 EEEKEKKKEKK-----KKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR--PKEF 510
++EKE KE K KK + KK +++ +E ++ K++ ++K R++ KE
Sbjct: 113 KQEKELIKEGKKPYYLKKSEIKKLVLKKKFDELKKSKQLDKALEKKRKKNAGKEK 167
>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain. This region covers
both the Brf homology II and III regions. This region is
involved in binding TATA binding protein.
Length = 95
Score = 36.9 bits (86), Expect = 0.003
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKI 503
E+EE+E ++ +E K+KKK+K KKK+ + E K M+ KK
Sbjct: 31 EQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAGPASTAAEAVKKMLQKKKF 82
>gnl|CDD|203444 pfam06424, PRP1_N, PRP1 splicing factor, N-terminal. This domain
is specific to the N-terminal part of the prp1 splicing
factor, which is involved in mRNA splicing (and possibly
also poly(A)+ RNA nuclear export and cell cycle
progression). This domain is specific to the N terminus
of the RNA splicing factor encoded by prp1. It is
involved in mRNA splicing and possibly also poly(A)and
RNA nuclear export and cell cycle progression.
Length = 131
Score = 37.3 bits (87), Expect = 0.004
Identities = 14/43 (32%), Positives = 31/43 (72%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
++E+EE + E +++ ++++KK++++K+KEE E+ EE K
Sbjct: 57 DDEDEEADRIYESIDERMDERRKKRREQKEKEEIEKYREENPK 99
Score = 31.9 bits (73), Expect = 0.29
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 447 GGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
G ++E+EE E E+ E++KK++++K+K+E E+ EE K
Sbjct: 52 SDGKYDDEDEEADRIYESIDERMDERRKKRREQKEKEEIEKYREENPK 99
Score = 29.6 bits (67), Expect = 1.6
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 433 SRNPERIDTPRRRGGGGGGEEEEE-----EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEE 487
+R+ ID + + E + ++E+EE ++ E ++ +++KK E+
Sbjct: 25 ARDGVDIDDEEDEDPKRYQDGDNEGLFSDGKYDDEDEEADRIYESIDERMDERRKKRREQ 84
Query: 488 EEEEEKKKMMMMMKKI 503
+E+EE +K KI
Sbjct: 85 KEKEEIEKYREENPKI 100
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 39.1 bits (92), Expect = 0.004
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 28/109 (25%)
Query: 406 REERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEE 465
+EERL+++ E ERE+ E+EE E E E+
Sbjct: 246 KEERLQEERAEEEAERERMLEKQ-----------------------AEDEELEQENAEKR 282
Query: 466 KEKKKEKKKK-----KKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
+ K+ E +++ ++K++++ E EEE EE +++ + + R +E
Sbjct: 283 RMKRLEHRRELEQQIEEKEERRAAEREEELEEGERLREEEAERQARIEE 331
Score = 37.6 bits (88), Expect = 0.014
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 28/127 (22%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEE--EEEGE 460
R++ ER + E ER ER++ + L E + R E +E + +
Sbjct: 159 QREKAEREE-EREAERRERKEEKEREVARLRAQQEEAEDERE-------ELDELRADLYQ 210
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKE------------------EEEEEEEEKKKMMMMMKK 502
EE E KE++KEK++ +K++++K+E E EEE E+++M+ +
Sbjct: 211 EEYERKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAE 270
Query: 503 IRRRPKE 509
+E
Sbjct: 271 DEELEQE 277
Score = 36.8 bits (86), Expect = 0.024
Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 34/111 (30%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
A+ E++ K E+E E R EEE + EE
Sbjct: 24 AQIEEKKRIKAEEKEEERRIDEMM-------------------------EEERLKALAEE 58
Query: 463 EEEKEKKKEKKKK---------KKKKKKKKEEEEEEEEEKKKMMMMMKKIR 504
EE + K+KE++++ ++++K+++EE EE +E+++M ++++I+
Sbjct: 59 EERERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQEREQMDEIIERIQ 109
Score = 33.7 bits (78), Expect = 0.19
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 19/76 (25%)
Query: 453 EEEEEEGEEEEEEKEKKKEKK----------KKKKKKKKKKEEEEEEE---------EEK 493
E +EE E E +EK +K++K + ++K+++K+ E EEE E+
Sbjct: 106 ERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQREKAER 165
Query: 494 KKMMMMMKKIRRRPKE 509
++ ++ R+ KE
Sbjct: 166 EEEREAERRERKEEKE 181
Score = 29.5 bits (67), Expect = 4.4
Identities = 23/104 (22%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 404 RKREERLRKQAEREREER-EKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
+ ER++++ E E +E+ EK + + N ERI+ E+E E E E +
Sbjct: 102 DEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEE-------EKEREREEELK 154
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
E +++K +++++++ ++++ +EE+E E + + R
Sbjct: 155 ILEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAEDER 198
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional.
Length = 330
Score = 39.0 bits (92), Expect = 0.004
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 443 RRRGGGGGGE-------EEEEEEGEEEEEEKEKKKEKKKK-KKKKKKKKEEEEEEEEEKK 494
+R GE E+ +E EE + KKE K K +KKK+K+E + + + K
Sbjct: 30 AQRKKSQKGELEVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
Query: 495 K 495
Sbjct: 90 P 90
Score = 30.6 bits (70), Expect = 2.1
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKK 483
++E + +K+K+K++ K K K K +
Sbjct: 63 KKELKAWHKAQKKKEKQEAKAAKAKSKPR 91
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 39.1 bits (92), Expect = 0.005
Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 24/127 (18%)
Query: 403 ARKREERLRKQAERE-REEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEE 461
A++ +LR + ERE +E R + Q L R +R +T R+ +EE E+ E+
Sbjct: 56 AKEEVHKLRAELERELKERRNELQR----LERRLLQREETLDRKMESLDKKEENLEKKEK 111
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEE------EEKKKMMM-------------MMKK 502
E KEK ++K+++ ++ ++ EE E EE K++++ ++K+
Sbjct: 112 ELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEARHEAAKLIKE 171
Query: 503 IRRRPKE 509
I KE
Sbjct: 172 IEEEAKE 178
Score = 28.7 bits (65), Expect = 8.8
Identities = 12/50 (24%), Positives = 29/50 (58%)
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
EE ++E E +K+ + K++ K + E E E +E + ++ + +++ +R
Sbjct: 39 EEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQR 88
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 39.2 bits (91), Expect = 0.005
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 10/77 (12%)
Query: 415 EREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKK 474
+ EERE + I EE EEE+ EEE +K K+ KK
Sbjct: 294 GNDPEEREDKLS----------PEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKK 343
Query: 475 KKKKKKKKKEEEEEEEE 491
K KK +++ + +
Sbjct: 344 LKGKKNGLDKDDSDSGD 360
Score = 33.4 bits (76), Expect = 0.29
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 8/64 (12%)
Query: 440 DTPRRRGGGGGG--------EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
+T +GGGG G E ++E++G+E ++ E E+K KKKKKK K +++ +++
Sbjct: 199 ETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKKKLDDD 258
Query: 492 EKKK 495
+K K
Sbjct: 259 KKGK 262
Score = 33.4 bits (76), Expect = 0.33
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 451 GEEEEEEE---------GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMK 501
G++E EE G + EE ++K + K + ++ ++ EE EEE+ ++ + K
Sbjct: 277 GDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSK 336
Query: 502 KIRRRPK 508
K ++ K
Sbjct: 337 KGKKLKK 343
>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA.
Members of this family are associated with type VII
secretion of WXG100 family targets in the Firmicutes,
but not in the Actinobacteria. This highly divergent
protein family consists largely of a central region of
highly polar low-complexity sequence containing
occasional LF motifs in weak repeats about 17 residues
in length, flanked by hydrophobic N- and C-terminal
regions [Protein fate, Protein and peptide secretion and
trafficking].
Length = 150
Score = 37.4 bits (87), Expect = 0.005
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 435 NPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
P R + E + +EE E +K+ +++KK +K +E+ E+EE K
Sbjct: 27 KPNRYEKKD---------IEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELK 77
Query: 495 KMM 497
+
Sbjct: 78 NQL 80
>gnl|CDD|225962 COG3428, COG3428, Predicted membrane protein [Function unknown].
Length = 494
Score = 39.0 bits (91), Expect = 0.006
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Query: 438 RIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
RI+T GGGG E E E E E +E + KK + E + EEE + +
Sbjct: 115 RIETA----GGGGEAEAELVEREIAFELAALVREARVKKLDALELAEADTPEEEVAEVLA 170
Query: 498 MMMKKIRRRPKEF 510
+ R P
Sbjct: 171 RSQSSVLRYPMNK 183
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 38.5 bits (90), Expect = 0.006
Identities = 15/47 (31%), Positives = 31/47 (65%)
Query: 446 GGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
GGGGGG + ++KK+ KK+++K+ K+ +E+++++E+E
Sbjct: 162 GGGGGGTWGLVGVPGHSSDSEKKKQRKKQRRKRSKELREDDDDDEDE 208
Score = 34.2 bits (79), Expect = 0.15
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 446 GGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
G GGGG G +KK+++KK+++K+ K+ E+++++E
Sbjct: 160 GSGGGGGGTWGLVGVPGHSSDSEKKKQRKKQRRKRSKELREDDDDDE 206
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 38.7 bits (90), Expect = 0.007
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 9/99 (9%)
Query: 413 QAEREREEREKAQASMCNLLSRNPER---IDTPRRRGGGGGGEEEEEEEGEEEEEEKEKK 469
AE+ + REK + L + R I TP R E E E ++ +K
Sbjct: 287 HAEQRAQYREKQKEKKAFLWTLRRNRLRMIITPWR------APELHAENAEIKKTRTAEK 340
Query: 470 KEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPK 508
E K +KK+ +K+ E E + + R R +
Sbjct: 341 NEAKARKKEIAQKRRAAEREINREARQERAAAMARARAR 379
Score = 30.6 bits (69), Expect = 2.2
Identities = 28/157 (17%), Positives = 46/157 (29%), Gaps = 24/157 (15%)
Query: 353 ARKREERLRKQAELKIKLFCPVFLRHWNRGDYNSCCRTDLTFKPVPDSKLARKREERLRK 412
A +R + KQ E K L+ NR R +T P+ ++ R
Sbjct: 288 AEQRAQYREKQKEKKAFLWT----LRRNRL------RMIITPWRAPELHAENAEIKKTRT 337
Query: 413 QAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEK 472
+ E + R+K I RR E +E + ++
Sbjct: 338 AEKNEAKARKK--------------EIAQKRRAAEREINREARQERAAAMARARARRAAV 383
Query: 473 KKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
K KKK E+ E ++ + E
Sbjct: 384 KAKKKGLIDASPNEDTPSENEESKGSPPQVEATTTAE 420
Score = 28.7 bits (64), Expect = 9.0
Identities = 15/85 (17%), Positives = 31/85 (36%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
ARK+E +++A RE Q + R ++ G E+ E E
Sbjct: 345 ARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDASPNEDTPSENE 404
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEE 487
E + + + + ++ +E+
Sbjct: 405 ESKGSPPQVEATTTAEPNREPSQED 429
>gnl|CDD|218258 pfam04774, HABP4_PAI-RBP1, Hyaluronan / mRNA binding family. This
family includes the HABP4 family of hyaluronan-binding
proteins, and the PAI-1 mRNA-binding protein, PAI-RBP1.
HABP4 has been observed to bind hyaluronan (a
glucosaminoglycan), but it is not known whether this is
its primary role in vivo. It has also been observed to
bind RNA, but with a lower affinity than that for
hyaluronan. PAI-1 mRNA-binding protein specifically
binds the mRNA of type-1 plasminogen activator inhibitor
(PAI-1), and is thought to be involved in regulation of
mRNA stability. However, in both cases, the sequence
motifs predicted to be important for ligand binding are
not conserved throughout the family, so it is not known
whether members of this family share a common function.
Length = 106
Score = 36.2 bits (84), Expect = 0.007
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 444 RRGGGGGG-------EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
+R G G G E E E + EEEEK + +EK+ +++ K+ EEEE EE++
Sbjct: 18 KREGAGRGNWGSVKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDK 77
Query: 497 MM 498
M
Sbjct: 78 EM 79
>gnl|CDD|215038 PLN00040, PLN00040, Protein MAK16 homolog; Provisional.
Length = 233
Score = 37.8 bits (88), Expect = 0.007
Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 12/109 (11%)
Query: 401 KLARKREERLRKQAERE--REEREKAQASMCNLLSRNPERIDTPRRRGGGGG-------- 450
KLA K E++ + RE R +++A L ++ E+ R + G G
Sbjct: 124 KLALKTREKIVTTPRKLLKRERRRESKAQKAAQLEKSIEKELLERLKSGTYGDIYNFPSK 183
Query: 451 --GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
+ E EE EE EEE K + KKK + E E E+E E K +M
Sbjct: 184 SYNKVLEMEEVEEAEEELPKSDKNPNSKKKSRVHVEIEYEDEIEYKSLM 232
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 38.7 bits (90), Expect = 0.007
Identities = 27/99 (27%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 400 SKLARKRE--ERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEE 457
SK A K++ E ++ +ERE + + S + + ++P EE EE
Sbjct: 389 SKYAMKQDDTEEEERRKRQERERQGTSSRSSDPSKASS-TSGESPSMASQESEEEESVEE 447
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
E EEEEEE+E+++E ++++ + ++++EE E + +++M
Sbjct: 448 EEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEM 486
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 36.6 bits (85), Expect = 0.008
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 443 RRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMM 498
RR +EE E+E E+EE + E +K++ + +KKK E + +EEKK M
Sbjct: 72 LRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKKIMFA 127
Score = 33.9 bits (78), Expect = 0.071
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 452 EEEEEEEGEEEEEEK---EKKKEKKK-KKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
EE E+E+ E E K +KK K+K ++ K K KKEE E+E+E++++ M + + +
Sbjct: 46 EENEDEDDESTAESKRPEGRKKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKE 104
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 36.5 bits (85), Expect = 0.008
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKK 479
E+EEEE+ EE+++E E ++E+ KK K
Sbjct: 119 EDEEEEDDEEDDDEDESEEEESPVKKVK 146
Score = 34.6 bits (80), Expect = 0.038
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKK 480
EE+EEEE +EE++++++ +E++ KK K
Sbjct: 118 EEDEEEEDDEEDDDEDESEEEESPVKKVK 146
Score = 32.3 bits (74), Expect = 0.28
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKK 481
+EE+EEE ++EE++ E + E+++ KK K
Sbjct: 116 DDEEDEEEEDDEEDDDEDESEEEESPVKKVK 146
Score = 30.8 bits (70), Expect = 0.73
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 447 GGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKK 483
+++EE+E EE++EE + + E ++++ KK K
Sbjct: 110 EEDESDDDEEDEEEEDDEEDDDEDESEEEESPVKKVK 146
Score = 27.7 bits (62), Expect = 8.8
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 10/45 (22%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EE+E + +EE+EE+E +E +E+E EEEE
Sbjct: 108 ASEEDESDDDEEDEEEEDDEE----------DDDEDESEEEESPV 142
>gnl|CDD|236641 PRK10019, PRK10019, nickel/cobalt efflux protein RcnA; Provisional.
Length = 279
Score = 37.8 bits (88), Expect = 0.010
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 90 STNHGPQSHSHHHQHSHHHHHQTATASPPASAISG 124
+ +H H H H H HHH H +
Sbjct: 119 NMHHHDHDHDHDHDHEHHHDHGHHHHHEHGATAEE 153
Score = 33.2 bits (76), Expect = 0.27
Identities = 9/20 (45%), Positives = 9/20 (45%)
Query: 91 TNHGPQSHSHHHQHSHHHHH 110
N H H H H H HHH
Sbjct: 118 ENMHHHDHDHDHDHDHEHHH 137
Score = 30.5 bits (69), Expect = 2.1
Identities = 8/21 (38%), Positives = 8/21 (38%)
Query: 90 STNHGPQSHSHHHQHSHHHHH 110
N H H H H H H H
Sbjct: 113 ERNWLENMHHHDHDHDHDHDH 133
>gnl|CDD|222648 pfam14283, DUF4366, Domain of unknown function (DUF4366). This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 227 and
387 amino acids in length.
Length = 213
Score = 37.3 bits (87), Expect = 0.010
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EEE+ + + + E E EEE +KK
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKK 155
Score = 35.0 bits (81), Expect = 0.049
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMM 500
EEE+ + + + + E EEE E+K M ++
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKKSGMGPLL 162
Score = 31.9 bits (73), Expect = 0.54
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 22/64 (34%)
Query: 452 EEEEEEEGEEEEEEKEKKKE----------------------KKKKKKKKKKKKEEEEEE 489
E E E E EE+ +KK K K K+++K +++ +
Sbjct: 137 CTGPEPEPEPEPEEEPEKKSGMGPLLLVLAVALIGGGAYYYFKFYKPKQQEKGAPDDDLD 196
Query: 490 EEEK 493
E +
Sbjct: 197 EYDY 200
Score = 31.5 bits (72), Expect = 0.65
Identities = 6/39 (15%), Positives = 13/39 (33%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEE 490
EE+ + + + + + EEE E+
Sbjct: 116 EEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 31.5 bits (72), Expect = 0.75
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 25/66 (37%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKK-------------------------KKKKKKKKEEE 486
E G E E E E ++E +KK K K+++K
Sbjct: 132 VNMTECTGPEPEPEPEPEEEPEKKSGMGPLLLVLAVALIGGGAYYYFKFYKPKQQEKGAP 191
Query: 487 EEEEEE 492
+++ +E
Sbjct: 192 DDDLDE 197
Score = 30.8 bits (70), Expect = 1.1
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
EEE+ + + + + E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 28.5 bits (64), Expect = 7.0
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 22/63 (34%)
Query: 452 EEEEEEEGEEEEEEKEK----------------------KKEKKKKKKKKKKKKEEEEEE 489
E E E E EEE ++K K K K+++K ++ +E
Sbjct: 139 GPEPEPEPEPEEEPEKKSGMGPLLLVLAVALIGGGAYYYFKFYKPKQQEKGAPDDDLDEY 198
Query: 490 EEE 492
+
Sbjct: 199 DYG 201
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 37.4 bits (87), Expect = 0.011
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKK 483
E++E E +EEE EKE ++E++ KKKK+ K K
Sbjct: 62 EDDEPESDDEEEGEKELQREERLKKKKRVKTK 93
Score = 33.5 bits (77), Expect = 0.17
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKK 482
+E E ++ EE E+E ++++ KKKK+ K K
Sbjct: 63 DDEPESDDEEEGEKELQREERLKKKKRVKTKA 94
Score = 32.0 bits (73), Expect = 0.52
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 13/57 (22%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKK--------KKKKKKK-----EEEEEEEEEKKK 495
E ++EEEGE+E + +E+ K+KK+ K KKKKKK + KKK
Sbjct: 67 ESDDEEEGEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKK 123
Score = 28.1 bits (63), Expect = 9.0
Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 32/146 (21%)
Query: 389 RTDLTFKPVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRR---R 445
+T +P K +K++ K + +K +S P +D+PRR R
Sbjct: 91 KTKAYKEPT---KKKKKKDPTAAKSPKAAAPRPKKKSE----RISWAPTLLDSPRRKSSR 143
Query: 446 GGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKE---EE---------------- 486
+E E +E E ++K + K +K+K+KKK+KE EE
Sbjct: 144 SSTVQNKEATHERLKEREIRRKKIQAKARKRKEKKKEKELTQEERLAEAKETERINLKSL 203
Query: 487 ---EEEEEEKKKMMMMMKKIRRRPKE 509
EE+EEEKKK + K RR +
Sbjct: 204 ERYEEQEEEKKKAKIQALKKRRLYEG 229
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 36.9 bits (86), Expect = 0.011
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
E E+ + E+ K +KK+K+K+ KKK+ ++ E EE + ++
Sbjct: 5 EALLEQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEE 47
Score = 32.3 bits (74), Expect = 0.36
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E E+ ++E++K +KK+K+K+ KKKE+ ++ E E+ K
Sbjct: 2 SSREALLEQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVK 44
Score = 31.9 bits (73), Expect = 0.48
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 468 KKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKK 502
KK K+K+K+KKK KKE +E +E+ +KK KK
Sbjct: 145 KKALKRKEKQKKKSKKEWKERKEKVEKKKAERQKK 179
Score = 28.0 bits (63), Expect = 8.7
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 462 EEEEKEKKKEKKKKKKKKKKKK 483
EE K++K +KK KKKKK KKK
Sbjct: 181 EENLKKRKDDKKNKKKKKAKKK 202
Score = 28.0 bits (63), Expect = 9.8
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 20/119 (16%)
Query: 404 RKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEE------EEE 457
RKRE+R ++ ++ +E ++K A E + ++ E E
Sbjct: 13 RKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGNIVFSKVEFA 72
Query: 458 EGEEEEEEKEKKKEKKKKKK----------KKKKK----KEEEEEEEEEKKKMMMMMKK 502
+GE+ +++ + KK+KKKKK +KKK E++ E EEK+K + K
Sbjct: 73 DGEQAKKDLKLKKKKKKKKTDYKQLLKKLEARKKKLEELDEDKAAEIEEKEKWTKALAK 131
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 38.1 bits (88), Expect = 0.011
Identities = 19/97 (19%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 399 DSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEE 458
+S+ KR ++L+++ ++++ + +KAQ + D R E + +
Sbjct: 207 ESQEDAKRAQQLKEELDKKQIDADKAQQK----ADFAQDNADKQRDEVRQKQQEAKNLPK 262
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ KE K+ + +K++ +K + E ++ +EE K
Sbjct: 263 PADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALK 299
Score = 36.5 bits (84), Expect = 0.028
Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
A+++ + + A+++R+E + Q N P +P+ ++ E E+ + E
Sbjct: 232 AQQKADFAQDNADKQRDEVRQKQQEAKN--LPKPADTSSPKEDKQVAENQKREIEKAQIE 289
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
++ +++ K K K K+E + E+E + K
Sbjct: 290 IKKNDEEALKAKDHKAFDLKQESKASEKEAEDK 322
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 38.2 bits (88), Expect = 0.012
Identities = 26/129 (20%), Positives = 39/129 (30%), Gaps = 9/129 (6%)
Query: 44 TISHSTSSSATSVQHKMKRGTSPALSQAGLSHVASATLSQTTSSSVSTNHGPQSHSHHHQ 103
T H T SS TS Q + + S T + T T P S H
Sbjct: 584 TGQHGTGSSPTSQQPGIPSSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHV 643
Query: 104 HSHHHHHQTATASPPASAISGSKSRGIG--DPIPNHILLSEHKPRPSESQSSSSAQPPSS 161
T + P S G P + ++E P P+ + S+ + ++
Sbjct: 644 -------STLSPGPGPGTTSQVSGPGNSSTSRYPGEVHVTEGMPNPNATSPSAPSGQKTA 696
Query: 162 SPDCHSLPA 170
P S
Sbjct: 697 VPTVTSTGG 705
Score = 29.4 bits (65), Expect = 5.4
Identities = 24/158 (15%), Positives = 49/158 (31%), Gaps = 9/158 (5%)
Query: 8 SSSVTTRMREEDAQEIMHHSSHHSSSVHHHSEHSKQTISHSTSSSATSVQHKMKRGTSPA 67
+S T E +S +S+ + + + + + +S T TSP
Sbjct: 470 TSGTPTGTTSSTLPEDTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPT 529
Query: 68 LSQAGLSHVASATLSQTTSSSVSTNHGPQSHSHHHQHSHHHHHQT---ATASPPASAISG 124
G++ A++ + TTS +T+ S + + T++
Sbjct: 530 PIVIGVTTTATSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGT 589
Query: 125 SKSRGIGDPIPNHILLSEHKPRPSESQSSSSAQPPSSS 162
S P + +S+S P +S
Sbjct: 590 GSSPTSQQPGIPSSS------HSTPRSNSTSTTPLLTS 621
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 37.4 bits (87), Expect = 0.012
Identities = 25/102 (24%), Positives = 56/102 (54%), Gaps = 13/102 (12%)
Query: 412 KQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKE 471
+QA ++R + K +A+ + S R +EE + +E E +K K+
Sbjct: 143 QQAAKQRTPKHKKEAAE-SASSSLSGSAKPERN-------VSQEEAKKRLQEWELKKLKQ 194
Query: 472 KKKKKKKKKKKKEEEEEEEEEKKKMMMM-----MKKIRRRPK 508
+++K++++++K+ ++++EEEE+K+ MK +++RPK
Sbjct: 195 QQQKREEERRKQRKKQQEEEERKQKAEEAWQKWMKNVKQRPK 236
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 38.3 bits (90), Expect = 0.012
Identities = 17/63 (26%), Positives = 36/63 (57%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFL 511
EE E+ E ++EEE+++ KE + KK + +K+++ + + K+ + + KKI + +
Sbjct: 170 EELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEEITPM 229
Query: 512 HRI 514
I
Sbjct: 230 KEI 232
Score = 34.4 bits (80), Expect = 0.15
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRP 507
++ +EE E+ E +KE++ EK K+ + KK E E++++ K +
Sbjct: 166 DDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKK 220
Score = 33.7 bits (78), Expect = 0.32
Identities = 12/51 (23%), Positives = 30/51 (58%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKK 502
+EE E+ ++EEE EK ++ + KK + +++++ + + K+ + + K
Sbjct: 169 KEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGK 219
Score = 31.0 bits (71), Expect = 1.8
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ +EE E E ++E+E +K K+ + KK + E++++ +
Sbjct: 167 DSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDP 210
Score = 28.7 bits (65), Expect = 9.5
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIR 504
EE+E+ E E K+ + EKKK+ K K+ + ++ K+ + MK+I
Sbjct: 181 EEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEEITPMKEIN 233
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 36.9 bits (86), Expect = 0.012
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMM 498
EEEE+ + EE E K + ++ + K+K KE ++EE+EE +
Sbjct: 125 EEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHRAA 171
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 36.8 bits (86), Expect = 0.012
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 17/95 (17%)
Query: 401 KLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGE 460
+ R E+L+K+ E ++ + QA +I+ ++ G EE EE E
Sbjct: 65 NKLKTRLEKLKKELEELKQRIAELQA-----------QIEKLKK------GREETEERTE 107
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EE K+ +KE KK K + +K ++ + E E+ K+
Sbjct: 108 LLEELKQLEKELKKLKAELEKYEKNDPERIEKLKE 142
Score = 36.1 bits (84), Expect = 0.022
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 15/97 (15%)
Query: 400 SKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEG 459
S+ K + RL K + E +++ + R EE EE
Sbjct: 61 SQALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGR---------------EETEER 105
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
E EE ++ +++ KK K + +K E+ + E EK K
Sbjct: 106 TELLEELKQLEKELKKLKAELEKYEKNDPERIEKLKE 142
Score = 32.6 bits (75), Expect = 0.32
Identities = 16/60 (26%), Positives = 33/60 (55%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFL 511
+ E+ +E EE K++ E + + +K KK +EE EE E +++ + K++++ E
Sbjct: 68 KTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLKAELE 127
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component. This
family is a region of the Myb-Related Cdc5p/Cef1
proteins, in fungi, and is part of the pre-mRNA splicing
factor complex.
Length = 363
Score = 37.7 bits (88), Expect = 0.013
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
E E EE EEE EE E++ E+ + +K+ EE +E+EE ++ ++++ RP
Sbjct: 146 ELELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEELRRRSQVIQRNLPRPSVL 204
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 37.0 bits (86), Expect = 0.015
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 446 GGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
GG G + +++ E+E+E E ++ KKK++ + ++++E EE K
Sbjct: 61 GGTGVKDFLSDQKPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKA 109
Score = 34.3 bits (79), Expect = 0.10
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ E+ +E + ++ KKK++ + KKK+E EE + +KK
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKK 113
Score = 33.9 bits (78), Expect = 0.16
Identities = 13/49 (26%), Positives = 29/49 (59%)
Query: 447 GGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
GG G ++ ++ E+E+E + ++ KKK++ + ++++E EE K
Sbjct: 61 GGTGVKDFLSDQKPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKA 109
Score = 28.2 bits (63), Expect = 9.5
Identities = 9/43 (20%), Positives = 26/43 (60%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
E E+ ++++E + +KKK+ ++ K +++ ++ +EK+
Sbjct: 80 LSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQ 122
>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in
Williams-Beuren syndrome. This domain family is found
in eukaryotes, and is typically between 72 and 83 amino
acids in length. The family is found in association with
pfam08241. This family is made up of
S-adenosylmethionine-dependent methyltransferases. The
proteins are deleted in Williams-Beuren syndrome (WBS),
a complex developmental disorder with multisystemic
manifestations including supravalvular aortic stenosis
(SVAS) and a specific cognitive phenotype.
Length = 85
Score = 34.6 bits (80), Expect = 0.015
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 448 GGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
G G E EE++E + + + + ++KKKKKKK K +K K ++ KK + R
Sbjct: 15 GLGEEGEEDDEQIDASKVRRISQRNRRKKKKKKKLK--------KKSKEWILRKKEQMR 65
Score = 33.4 bits (77), Expect = 0.036
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 445 RGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKK 483
G G GEE++E+ + ++ +KKKKKKK KKK
Sbjct: 14 NGLGEEGEEDDEQIDASKVRRISQRNRRKKKKKKKLKKK 52
Score = 27.6 bits (62), Expect = 3.6
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 13/52 (25%)
Query: 446 GGGGGGEEEEEEEGEEEEEE-------------KEKKKEKKKKKKKKKKKKE 484
GG E+ GEE EE+ + +++KKKKKK KKK KE
Sbjct: 4 GGPSVPEQLPNGLGEEGEEDDEQIDASKVRRISQRNRRKKKKKKKLKKKSKE 55
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM). This
family consists of several Plasmodium falciparum SPAM
(secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the alanine
heptad-repeat domain. Heptad repeats in which the a and
d position contain hydrophobic residues generate
amphipathic alpha-helices which give rise to helical
bundles or coiled-coil structures in proteins. SPAM is
an example of a P. falciparum antigen in which a
repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 36.0 bits (83), Expect = 0.015
Identities = 18/52 (34%), Positives = 35/52 (67%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIR 504
+E++EE EEE+EE+ ++ E + +++ + +EEEEE+EE+ + + KK
Sbjct: 48 QEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNI 99
Score = 36.0 bits (83), Expect = 0.018
Identities = 16/44 (36%), Positives = 32/44 (72%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+E++EEE EE+EEE E+ ++ + +++ + ++EEEE+EE+
Sbjct: 48 QEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDL 91
Score = 34.1 bits (78), Expect = 0.067
Identities = 16/44 (36%), Positives = 31/44 (70%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E++EEEE E+EEE +E + + +++ + +++EEE+EE+ K
Sbjct: 49 EDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLK 92
Score = 34.1 bits (78), Expect = 0.089
Identities = 16/44 (36%), Positives = 34/44 (77%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+E++E++ EEEEE++E+ +E + + +++ ++EEEEEE+E+
Sbjct: 45 DEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDN 88
Score = 33.3 bits (76), Expect = 0.13
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKK 502
E+EEE E+EEEE+E +++ K +KK + ++ ++ K
Sbjct: 68 IEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQDDNAQNLISKN 118
Score = 32.9 bits (75), Expect = 0.20
Identities = 16/54 (29%), Positives = 39/54 (72%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRP 507
+E++E +EEEEE+++++ ++ + + +++ E+EEEEEE ++ + +K I ++
Sbjct: 45 DEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKN 98
Score = 32.5 bits (74), Expect = 0.24
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEE 486
+ E+EEE E+EEE+E+ +E K +KK +
Sbjct: 67 DIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNIND 101
Score = 32.5 bits (74), Expect = 0.26
Identities = 17/44 (38%), Positives = 32/44 (72%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E++E++E EEEE+E+E ++ + + +++ + EEEEEE+EE
Sbjct: 46 EKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNV 89
Score = 31.4 bits (71), Expect = 0.55
Identities = 14/44 (31%), Positives = 31/44 (70%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EEEE+EE EE E+ E ++E + ++++++ +E+ + ++ +KK
Sbjct: 54 EEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKK 97
Score = 29.8 bits (67), Expect = 1.9
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
E EE E+ E+EEE E ++E+++ ++ K+ E++ +
Sbjct: 61 EIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNIND 101
Score = 29.4 bits (66), Expect = 3.0
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
E+ E+EE E+EE+E++ E+ K +KK + +
Sbjct: 66 EDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQ 107
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 37.6 bits (87), Expect = 0.016
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E E++ EEE E K+KK+EK K+K+ KK K ++E + + + +
Sbjct: 7 EAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQ 50
Score = 37.6 bits (87), Expect = 0.018
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 447 GGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
G E E++ EEE E++KKKE+K K+K+ KK K ++E + + +
Sbjct: 1 GSRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQ 48
Score = 35.3 bits (81), Expect = 0.095
Identities = 21/118 (17%), Positives = 45/118 (38%), Gaps = 36/118 (30%)
Query: 396 PVPDSKLARKRE-ERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEE 454
+ K+ + E ER +K+ E+ +E+ K + +
Sbjct: 6 SEAEKKILTEEELERKKKKEEKAKEKELKKLKAA-------------------------Q 40
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE----------EKKKMMMMMKK 502
+E + + + ++ KK +KK +K++ E+E E +KK++ M K
Sbjct: 41 KEAKAKLQAQQASDGTNVPKKSEKKSRKRDVEDENPEDFIDPDTPFGQKKRLSSQMAK 98
Score = 33.3 bits (76), Expect = 0.35
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 449 GGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
G E E E+ EEE E+KK KK++K K+K+ K+ + ++E K K+
Sbjct: 1 GSRTESEAEKKILTEEELERKK-KKEEKAKEKELKKLKAAQKEAKAKL 47
Score = 33.3 bits (76), Expect = 0.36
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 448 GGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
G E E E++ EEE + KKK+++K K+K+ KK + ++E + K +
Sbjct: 1 GSRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQ 48
Score = 32.9 bits (75), Expect = 0.42
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
EEE E + ++EE+ KEK+ +K K +K+ K K + ++ + KK R+R E
Sbjct: 15 EEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKRDVE 72
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 36.1 bits (84), Expect = 0.016
Identities = 13/62 (20%), Positives = 42/62 (67%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLH 512
+++E+E ++EE++ +K+ ++ +K K++E +++++E ++K ++++++ +E L
Sbjct: 52 QKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQKQQAAQQELQQKQQELLQ 111
Query: 513 RI 514
I
Sbjct: 112 PI 113
Score = 33.0 bits (76), Expect = 0.15
Identities = 13/106 (12%), Positives = 52/106 (49%), Gaps = 16/106 (15%)
Query: 400 SKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEG 459
S + +++L K+ ++ + E +K + + +++ +
Sbjct: 30 SPAGKAAQKQLEKEFKKLQAELQKKEKELQKEE----QKLQK------------QAATLS 73
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRR 505
EE + K+++ ++K+++ ++K++ ++E ++++++ + + KI +
Sbjct: 74 EEARKAKQQELQQKQQELQQKQQAAQQELQQKQQELLQPIYDKIDK 119
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 37.5 bits (88), Expect = 0.016
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 401 KLARKREERLRKQAEREREEREKAQASMCNLLS---RNPERIDTPRRRGGGGGGEEEEEE 457
KL + EE+ K E E + E+A+ + + + I R+ GG +
Sbjct: 548 KLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAH 607
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
E E + K EKK+KKKKK+K+K+EE + +E K
Sbjct: 608 ELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVK 644
Score = 35.2 bits (82), Expect = 0.087
Identities = 17/42 (40%), Positives = 30/42 (71%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
E++ EE E +E EK KE+ ++KK+K +++E++ EE EK+
Sbjct: 533 EQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE 574
Score = 34.0 bits (79), Expect = 0.23
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
EE E E E++ EE E ++ +K K++ ++K+E+ +EEE+K
Sbjct: 526 EELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLE 569
Score = 32.9 bits (76), Expect = 0.46
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EE E E ++ EE + KE +K K++ ++KKE+ +EEE++ +
Sbjct: 524 SLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLE 569
Score = 31.3 bits (72), Expect = 1.6
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
E E E+ EE E K+ EK K++ ++KK+K +EEE++ ++
Sbjct: 529 ERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEE 570
Score = 30.6 bits (70), Expect = 2.1
Identities = 19/60 (31%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEE---EEKKKMMMMMKKIRRRPKE 509
E +E E+ +EE E+KKEK ++++ K ++ E+E ++ E KK+ ++K++R+ K
Sbjct: 540 EALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKG 599
Score = 30.6 bits (70), Expect = 2.4
Identities = 15/48 (31%), Positives = 32/48 (66%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKK 502
EE E E E++ +E + K+ +K K++ +E++E+ +EE+ K++ +K
Sbjct: 526 EELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEK 573
Score = 29.0 bits (66), Expect = 7.6
Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 20/97 (20%)
Query: 408 ERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKE 467
E L ++ E++ EE E L + E++ +EE EE+ E+ +EE++
Sbjct: 526 EELERELEQKAEEAEA--------LLKEAEKL------------KEELEEKKEKLQEEED 565
Query: 468 KKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIR 504
K E+ +K+ ++ K+ ++E +E K+ +
Sbjct: 566 KLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYA 602
>gnl|CDD|240577 cd12950, RRP7_Rrp7p, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p) and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p. Rrp7p is encoded by YCL031C
gene from Saccharomyces cerevisiae. It is an essential
yeast protein involved in pre-rRNA processing and
ribosome assembly. Rrp7p contains an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 128
Score = 35.3 bits (82), Expect = 0.017
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 12/70 (17%)
Query: 445 RGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKK--------KKKKEEEEEE----EEE 492
RGG G EE EEE+KEK+K+KKKKK+ + +KKKEE+ + EE+
Sbjct: 58 RGGRKGPAAGEEAGKAAEEEKKEKEKKKKKKKELEDFYRFQLREKKKEEQADLLKKFEED 117
Query: 493 KKKMMMMMKK 502
K+++ M +K
Sbjct: 118 KERVEKMKEK 127
Score = 29.2 bits (66), Expect = 2.2
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
Query: 441 TPRRRGGGGGGEEEEEEEGEEEEEEKEKKK------------EKKKKKKKKKKKKEEEEE 488
R+ G + EE ++E+E+K+KKK EKKK+++ KK EE++
Sbjct: 59 GGRKGPAAGEEAGKAAEEEKKEKEKKKKKKKELEDFYRFQLREKKKEEQADLLKKFEEDK 118
Query: 489 EEEEKKKM 496
E EK K
Sbjct: 119 ERVEKMKE 126
>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 438
Score = 37.1 bits (86), Expect = 0.017
Identities = 21/108 (19%), Positives = 44/108 (40%)
Query: 404 RKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEE 463
R +++ Q E + ++K Q ++ N + E E++ E E
Sbjct: 59 RSAKKKELSQLEEQLINQKKEQKNLFNEQIKQFELALQDEIAKLEALELLNLEKDKELEL 118
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFL 511
EKE + K+ +K+ + E E++ E K + + ++ +E L
Sbjct: 119 LEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESL 166
Score = 30.2 bits (68), Expect = 3.0
Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 401 KLARKREERLRKQAEREREERE--KAQASMCNLLSR-NPERIDTPRRRGGGGGGEEEEEE 457
+L+++ +++L+ AE ++RE K + + + E ++ R + EE+
Sbjct: 125 ELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKF------EEQLH 178
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
E + E KE +++++ K KK K E +
Sbjct: 179 EANLDLEFKENEEQRESKWAILKKLKRRAELGSQ 212
>gnl|CDD|149180 pfam07960, CBP4, CBP4. The CBP4 in S. cerevisiae is essential for
the expression and activity of ubiquinol-cytochrome c
reductase. This family appears to be fungal specific.
Length = 128
Score = 35.5 bits (82), Expect = 0.017
Identities = 21/97 (21%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 399 DSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEE 458
D +L + LRK+ E ER+ R++ + +L + D P + G E++
Sbjct: 33 DEELIARYNPELRKRYEEERDLRQQEFDELVTILKETSKS-DKPIWKTGPIESPWEKKRN 91
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E ++ K ++ +K++ ++ +++ +E + EE +K+
Sbjct: 92 VREFQKTKAEEAQKEELERIREELEEARAQSEEMRKE 128
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 34.3 bits (79), Expect = 0.018
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 466 KEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
K K+KKKKKKKK K KEE E+EE++K
Sbjct: 16 KIDVKKKKKKKKKKNKSKEEVVTEKEEEEK 45
Score = 34.3 bits (79), Expect = 0.020
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 467 EKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
+ KK+KKKKKKK K K+E E+EEE+K
Sbjct: 18 DVKKKKKKKKKKNKSKEEVVTEKEEEEKSS 47
Score = 34.3 bits (79), Expect = 0.020
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 466 KEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
K KK + KKKKKKKKKK + +EE EK++
Sbjct: 13 KGKKIDVKKKKKKKKKKNKSKEEVVTEKEE 42
Score = 32.0 bits (73), Expect = 0.14
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 466 KEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
K K K+ KKKKKKKKK+ + +EE +K
Sbjct: 11 KLKGKKIDVKKKKKKKKKKNKSKEEVVTEK 40
Score = 32.0 bits (73), Expect = 0.14
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ +KKK+KKKKK K K++ E+EEEE+
Sbjct: 18 DVKKKKKKKKKKNKSKEEVVTEKEEEEKSSA 48
Score = 31.2 bits (71), Expect = 0.26
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
+K+KKK+KKK K K++ E+EEEE+ +
Sbjct: 20 KKKKKKKKKKNKSKEEVVTEKEEEEKSSAE 49
Score = 31.2 bits (71), Expect = 0.28
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 466 KEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
K+KKK+KKKK K K++ E+EEEE+ +
Sbjct: 20 KKKKKKKKKKNKSKEEVVTEKEEEEKSSAE 49
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 37.4 bits (87), Expect = 0.019
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
G++ E + E+K KKKKKK+KK+EEE + EEK ++
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARI 767
Score = 36.2 bits (84), Expect = 0.055
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+EE+E G+ E E ++KK + ++K EE+ E + KK
Sbjct: 1525 QEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKK 1568
Score = 35.5 bits (82), Expect = 0.081
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 434 RNPERIDTPRRRGGGGGGEEEEE-------EEGEEEEEEKEKKKEKKKKKKKKKKKKEEE 486
RN E + + E++ +E EE+ E +K+K KK+ K E E
Sbjct: 1523 RNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNKKQYKSNTEAE 1582
Score = 35.5 bits (82), Expect = 0.089
Identities = 15/36 (41%), Positives = 26/36 (72%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEE 487
++ E + + EEK KKK+KK+KKK+++ K+EE+
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKA 765
Score = 34.7 bits (80), Expect = 0.16
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 449 GGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEE 490
G E + + EE+ +K+KKKEKKK+++ K+++K E E
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAE 771
Score = 32.8 bits (75), Expect = 0.53
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
G++ E + + EE+ +KKK+K+KKK+++ K++E+ E E
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAE 771
Score = 32.4 bits (74), Expect = 0.68
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
+ E + +++ KKKKKK+KKK+EE + EE+ +
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 31.2 bits (71), Expect = 1.6
Identities = 13/42 (30%), Positives = 27/42 (64%)
Query: 448 GGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEE 489
G E + + EE+ ++K+KK++KK+++ K+++K E E
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAE 771
Score = 30.5 bits (69), Expect = 2.9
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKK 502
+EE+E + E E +K+K+ + ++K EE+ E K K+
Sbjct: 1525 QEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNKKQ 1574
Score = 30.1 bits (68), Expect = 4.0
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEE---EEEKKK 495
EE+E E E +KEKK + ++K EE+ E ++ K K
Sbjct: 1526 EEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNK 1572
Score = 30.1 bits (68), Expect = 4.1
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKE---EEE-------EEEEEKKKMMMMMK 501
E E EE E EEE + + E + K K+++E EE+ EE E+ K + +
Sbjct: 244 ETSETEERVESEEETDVEIETASETKGTKQEQEGSTEEDPSPSLFSEEREDPDK-IDETE 302
Query: 502 KIRRRPKE 509
+IR KE
Sbjct: 303 EIRVNGKE 310
Score = 28.9 bits (65), Expect = 8.6
Identities = 14/42 (33%), Positives = 27/42 (64%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
G + E + EE+ K+KKK++KKK+++ K++++ E E
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAE 771
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 36.5 bits (84), Expect = 0.021
Identities = 21/72 (29%), Positives = 32/72 (44%)
Query: 422 EKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKK 481
EK + + N++ N E D EEEE E + EE+E ++ + +
Sbjct: 147 EKPRVTRFNIVWDNDEDNDEAPPAQPDVDNEEEERLEESDGREEEEDEEVGSDSYGEGNR 206
Query: 482 KKEEEEEEEEEK 493
+ EEEEEE E
Sbjct: 207 ELNEEEEEEAEG 218
Score = 31.9 bits (72), Expect = 0.68
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 18/86 (20%)
Query: 407 EERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEK 466
EERL + RE EE E+ + G G E EEE EE E
Sbjct: 179 EERLEESDGREEEEDEEVGSD------------------SYGEGNRELNEEEEEEAEGSD 220
Query: 467 EKKKEKKKKKKKKKKKKEEEEEEEEE 492
+ + + ++ KK+ EEEE EEE
Sbjct: 221 DGEDVVDYEGERIDKKQGEEEEMEEE 246
>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for
Rho/Rac/Cdc42-like GTPases [Signal transduction
mechanisms].
Length = 1175
Score = 37.2 bits (86), Expect = 0.021
Identities = 29/143 (20%), Positives = 48/143 (33%), Gaps = 29/143 (20%)
Query: 26 HSSHHSSSVHHHSEHSKQTISHSTSSSATSVQHKMKRGTSPALSQAGLSHVASATLSQTT 85
SS H + H + SH+ + +A S + P+L + + + +
Sbjct: 151 SSSTHGT--HPPIVFTDNNGSHAGAPNARSRKE------IPSLGSQSMQLPSPHFRQKFS 202
Query: 86 SSSVST-NHGPQSHSHHHQHSHHHHHQTATASPPASAISGSKSRGIGDPIPNHILLSEHK 144
SS S P S + H + S P S+ + +LL H
Sbjct: 203 SSDTSNGFSYP---SIRK---NSRHSSNSMPSFPHSSTA--------------VLLKRHS 242
Query: 145 PRPSESQSSSSAQPPSSSPDCHS 167
S SS+ P SS+ + S
Sbjct: 243 GSSGASLISSNITPSSSNSEAMS 265
>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production
and conversion].
Length = 161
Score = 35.7 bits (83), Expect = 0.023
Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 17/109 (15%)
Query: 399 DSKLARKREERLRKQAEREREE-REKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEE 457
+++ ++ + L + E+E EE RE+A E I+ ++ E+ EE
Sbjct: 48 EAERLKEEAQALLAEYEQELEEAREQAS-----------EIIEQAKKEA-----EQIAEE 91
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
E EEE E+ KE + + + +K++ EE E + + + +K+ +
Sbjct: 92 IKAEAEEELERIKEAAEAEIEAEKERALEELRAEVAELAVAIAEKLLGK 140
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 34.9 bits (80), Expect = 0.023
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEE 487
GE ++ E EK KKK+KK KK KK KK +++
Sbjct: 83 SGEPSHPDDHPPEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 32.5 bits (74), Expect = 0.16
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEE 489
E EK K+KKKK KK KK K+ +++
Sbjct: 94 PEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 31.0 bits (70), Expect = 0.44
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 449 GGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEE 486
G ++ E E+ +KKK+K KK KK KK +++
Sbjct: 83 SGEPSHPDDHPPEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 30.6 bits (69), Expect = 0.74
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 448 GGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEE 485
G ++ E E+ K+KKK+ KK KK KK K++
Sbjct: 83 SGEPSHPDDHPPEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.8 bits (67), Expect = 1.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 447 GGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKE 484
G ++ E+ +K+KKK KK KK KK KK+
Sbjct: 83 SGEPSHPDDHPPEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.1 bits (65), Expect = 2.2
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 470 KEKKKKKKKKKKKKEEEEEEEE 491
K KKKKKK KK KK ++ +++
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 36.5 bits (85), Expect = 0.026
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
E+ E E E++ K K++ KKKK K+ K K ++ + KK+
Sbjct: 239 EDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKKI 283
Score = 34.2 bits (79), Expect = 0.14
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEE--EEEEKKKMMMMMKKI 503
++++ E EE+ E E + EKK+K K++ KKK+ +E + KK + MKKI
Sbjct: 229 ESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKKI 283
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 36.0 bits (83), Expect = 0.027
Identities = 15/52 (28%), Positives = 37/52 (71%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKI 503
+E++E EE E+E E+ +++K +K ++KE+++E EE K+++ +++++
Sbjct: 152 RKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLEEL 203
Score = 33.3 bits (76), Expect = 0.16
Identities = 20/42 (47%), Positives = 30/42 (71%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
E+E EE E+E++ EK E+K+KKK+ ++ KEE EE EE +
Sbjct: 163 EKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLEELE 204
Score = 31.4 bits (71), Expect = 0.84
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
E EE E+ ++ E+ ++KEKKK+ ++ K++ EE EE E
Sbjct: 165 ELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLEELE 204
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 35.6 bits (83), Expect = 0.030
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 467 EKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
E +KEKKK K++KK +EE+++ E+ ++ + +
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEPYGYCLVDGRKEK 135
Score = 34.1 bits (79), Expect = 0.12
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEE 490
E EKEKKK K++KK K+++++ EE
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 36.6 bits (85), Expect = 0.030
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 16/112 (14%)
Query: 404 RKREERLRKQAER------EREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEE 457
K + L+++AE EE + LSR E I+ G EE +
Sbjct: 282 VKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEIN----------GIEERIK 331
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
E EE+EE E+ K+K K+ +K+ ++ EE E EE K ++++++R
Sbjct: 332 ELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTG 383
Score = 36.2 bits (84), Expect = 0.050
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 404 RKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEG---- 459
+K E L ++ + +E +EKA+ + LS E R EEE G
Sbjct: 272 KKEIEELEEKVKELKELKEKAEEYI--KLSEFYEEYLDELREIEKRLSRLEEEINGIEER 329
Query: 460 -EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
+E EE++E+ +E KKK K+ +K+ EE EE E ++ +++ R K
Sbjct: 330 IKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRL 381
Score = 35.4 bits (82), Expect = 0.069
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 408 ERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKE 467
E L K+ E+E EE + + + L E ++ + +E EE + E EE EKE
Sbjct: 192 EELIKEKEKELEEVLREINEISSELPELREELEKLEKEV-----KELEELKEEIEELEKE 246
Query: 468 KKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPK 508
+ + K+K ++K +E EE EE KK++ + +K++ +
Sbjct: 247 LESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE 287
Score = 33.5 bits (77), Expect = 0.29
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
EEE ++ EE E EK+ E+ +K+ ++ +KK EEE EE +++ + + +++ E
Sbjct: 624 LEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAEL 682
Score = 33.5 bits (77), Expect = 0.31
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 401 KLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGE 460
+L ++ EE +K +E E EE + + L+ ++ +R EE ++ E
Sbjct: 644 ELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKR------REEIKKTLE 697
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMK 501
+ +EE E++++ KK+ +K +K E EE E+ KK ++K
Sbjct: 698 KLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLK 738
Score = 33.5 bits (77), Expect = 0.35
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 13/116 (11%)
Query: 400 SKLARKREER--LRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEE 457
S+L REE L K+ + E +E+ + L S G EE+
Sbjct: 214 SELPELREELEKLEKEVKELEELKEEIEELEKELESLE-----------GSKRKLEEKIR 262
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLHR 513
E EE EE +K+ E+ ++K K+ K+ +E+ EE + + R ++ L R
Sbjct: 263 ELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSR 318
Score = 32.7 bits (75), Expect = 0.52
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 399 DSKLARKRE-ERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEE-E 456
+ L ++ E +L++ AE+ +E EK + L + E + + + GE + +
Sbjct: 486 EKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLK 545
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
+E E+ EE K+K E +KK + +++ E +E EE
Sbjct: 546 KELEKLEELKKKLAELEKKLDELEEELAELLKELEEL 582
Score = 32.3 bits (74), Expect = 0.76
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 401 KLARKREERLRKQAEREREER--EKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEE 458
+L +K +E ++ E E E+A+A L ER+ E+
Sbjct: 342 ELKKKLKELEKRLEELEERHELYEEAKAKKEEL-----ERLKKRL-------TGLTPEKL 389
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
+E EE ++ K+E +++ K + E ++E +E KK + +KK + +
Sbjct: 390 EKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGK 437
Score = 32.3 bits (74), Expect = 0.78
Identities = 21/112 (18%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 407 EERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEK 466
+ + + E RE+ + L + + ++ + E E E + + EEK
Sbjct: 206 LREINEISSELPELREELEK-----LEKEVKELEELKEEIEELEKELESLEGSKRKLEEK 260
Query: 467 ----EKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLHRI 514
E++ E+ KK+ ++ ++K +E +E +EK + + + + + L I
Sbjct: 261 IRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREI 312
Score = 32.0 bits (73), Expect = 0.83
Identities = 25/115 (21%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 403 ARKREERLRKQAEREREEREK---AQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEG 459
A K + K+ +R E EK ++ L+ + ++ R E E
Sbjct: 163 AYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEI--SSELPELR 220
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLHRI 514
EE E+ +++ KE ++ K++ ++ ++E E E K+K+ ++++ R +E I
Sbjct: 221 EELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEI 275
Score = 32.0 bits (73), Expect = 0.86
Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 16/127 (12%)
Query: 399 DSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEE 458
D++ +REE+ K+ E E ++ + A L + ++ ++ EEE EE
Sbjct: 609 DAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKY-----SEEEYEE 663
Query: 459 GEEE-----------EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRP 507
EE E E+ ++++++ KK +K +EE EE E+ KK + ++K R
Sbjct: 664 LREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERV 723
Query: 508 KEFLHRI 514
+E ++
Sbjct: 724 EELREKV 730
Score = 31.2 bits (71), Expect = 1.6
Identities = 18/62 (29%), Positives = 34/62 (54%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLH 512
EE E++ EE E+ KEK + K + K KK+ E+ EE +++ ++ + ++ E L
Sbjct: 518 EELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLK 577
Query: 513 RI 514
+
Sbjct: 578 EL 579
Score = 30.8 bits (70), Expect = 2.0
Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 15/121 (12%)
Query: 404 RKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEE 463
+ K+ R EE + + L + + ++ EE EE E E
Sbjct: 306 LDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYE 365
Query: 464 EEKEKKKEKKKKKKKK---------------KKKKEEEEEEEEEKKKMMMMMKKIRRRPK 508
E K KK+E ++ KK+ +K KEE EEE + + +KK + K
Sbjct: 366 EAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELK 425
Query: 509 E 509
+
Sbjct: 426 K 426
Score = 30.0 bits (68), Expect = 4.0
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 18/126 (14%)
Query: 394 FKPVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEE 453
+ KL ++ EE L K E EE K A + L E EE
Sbjct: 381 LTGLTPEKLEKELEE-LEKAKEEIEEEISKITARIGELKKEIKELKKAI---------EE 430
Query: 454 EEEEEGE--------EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRR 505
++ +G+ EE KE +E + K+ +K+ +E EE+E + +K + ++K+ +
Sbjct: 431 LKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLK 490
Query: 506 RPKEFL 511
+ E +
Sbjct: 491 KESELI 496
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 36.7 bits (85), Expect = 0.030
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
E + + E K KK +KKKKKKKK++K +E+E E E + + R+ +E
Sbjct: 260 ETPASDYYDVSEMVKFKKPKKKKKKKKKRRKDLDEDELEPEAEGLGSSDSGSRKDVEE 317
Score = 34.7 bits (80), Expect = 0.14
Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 18/101 (17%)
Query: 395 KPVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEE 454
K +++ RKREE K A + RE+RE+ + G GE++
Sbjct: 44 KRQEEAEAKRKREELREKIA-KAREKRERNS-----------------KLGGIKTLGEDD 85
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
++++ + +K KK++KKK+ ++KK +E+E+E +
Sbjct: 86 DDDDDTKAWLKKSKKRQKKKEAERKKALLLDEKEKERAAEY 126
Score = 33.2 bits (76), Expect = 0.32
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 36/128 (28%)
Query: 397 VPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRR------RGGGGG 450
V K + E + +K ++ + + S+ LS+ E I+ ++ GG
Sbjct: 174 VEKEKDKKNLELKKKKPDYDPDDDDKFNKRSI---LSKYDEEIEGKKKKSDNLFTLDSGG 230
Query: 451 GEEEEEEEGEEEEEEKEK---------------------------KKEKKKKKKKKKKKK 483
++E E+ +E ++K K KK KKKKKKKKK++K
Sbjct: 231 STDDEAEKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKKKKKRRK 290
Query: 484 EEEEEEEE 491
+ +E+E E
Sbjct: 291 DLDEDELE 298
Score = 33.2 bits (76), Expect = 0.39
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 396 PVPDSKLARKREERLRKQAE----REREEREKAQASMCNLLSRNPERIDTPRRRGGGGGG 451
PVP +K +E R E R+ E K + L + + + R GG
Sbjct: 21 PVPGAKPGSTKESRDAAAYENWKKRQEEAEAKRKRE--ELREKIAKAREKRERNSKLGGI 78
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMM 498
+ E++ ++++ + KK KK++KKK+ ++K+ +E+EK++
Sbjct: 79 KTLGEDDDDDDDTKAWLKKSKKRQKKKEAERKKALLLDEKEKERAAE 125
Score = 33.2 bits (76), Expect = 0.40
Identities = 16/44 (36%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 454 EEEEEGEEEEEEK--EKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E+E+EG+E E + EK+K+KK + KKKK + +++++ K+
Sbjct: 160 EDEDEGDELENVELVEKEKDKKNLELKKKKPDYDPDDDDKFNKR 203
Score = 29.0 bits (65), Expect = 8.0
Identities = 12/61 (19%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE----EKKKMMMMMKKIRRRPKEFLHR 513
+ EEE + KK+K++++ E++++ K++ + K+ + RP++ +
Sbjct: 312 RKDVEEENARLEDSPKKRKEEQEDDDFVEDDDDLQASLAKQRRLAQKKRKKLRPEDIARQ 371
Query: 514 I 514
I
Sbjct: 372 I 372
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 36.5 bits (85), Expect = 0.031
Identities = 13/29 (44%), Positives = 24/29 (82%)
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEE 489
+ EE+K +K++KKKK+KKK KK++++ +
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 34.6 bits (80), Expect = 0.12
Identities = 13/28 (46%), Positives = 23/28 (82%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEE 487
EE++ +++KK+KK+KKK KK+KK+ +
Sbjct: 387 REEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 33.8 bits (78), Expect = 0.20
Identities = 12/30 (40%), Positives = 26/30 (86%)
Query: 466 KEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
K+K++EKK +K+KKKKK++++ ++ ++K +
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKKRKKKGR 413
Score = 33.8 bits (78), Expect = 0.20
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEE 490
+ EEK+ +K KKKKK+KKK KK +++ +
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 33.4 bits (77), Expect = 0.29
Identities = 13/29 (44%), Positives = 24/29 (82%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEE 488
+ EE++ +K+K+KKK+KKK KK+K++ +
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 33.0 bits (76), Expect = 0.32
Identities = 11/29 (37%), Positives = 23/29 (79%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
+ E++K +++KKKKK+KKK K+ +++ +
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 33.0 bits (76), Expect = 0.33
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
+ +EKK +K+KKKKK+KKK ++ +++ +
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 33.0 bits (76), Expect = 0.37
Identities = 11/29 (37%), Positives = 24/29 (82%)
Query: 466 KEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
K ++K+ +K+KKKKK+KK+ ++ +++ +K
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 33.0 bits (76), Expect = 0.38
Identities = 13/29 (44%), Positives = 23/29 (79%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKK 483
+ EE + ++ +K+KK++KK KK+KKK +K
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 33.0 bits (76), Expect = 0.38
Identities = 10/30 (33%), Positives = 26/30 (86%)
Query: 466 KEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
K+++++K +K+KKKKK+K++ ++ +++ +K
Sbjct: 385 KKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 32.6 bits (75), Expect = 0.43
Identities = 13/29 (44%), Positives = 24/29 (82%)
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
++E+KK +K+KKKKK+KKK ++ +++ K
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 32.2 bits (74), Expect = 0.61
Identities = 16/45 (35%), Positives = 31/45 (68%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
G+E +EE + EE KEK + KKK+++KK ++ +++++ +KK
Sbjct: 361 GDELKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKG 405
Score = 31.9 bits (73), Expect = 0.85
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKKKKKE 484
+ E ++ ++ K+KKK KKK KK+KKK ++
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 31.5 bits (72), Expect = 1.1
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKK 482
+ EE+ ++ ++K+K+K+K KK+KKK +K
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 31.5 bits (72), Expect = 1.3
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEE 485
+ E++ ++++KKK++KKK KK+KKK +
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 30.7 bits (70), Expect = 1.9
Identities = 11/29 (37%), Positives = 24/29 (82%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKK 481
+ EE++ ++ +++K++KK+ KK+KKK +K
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 35.9 bits (83), Expect = 0.032
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 412 KQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKE 471
++E+ + ++K + N ++ + I+ + + E +K +E
Sbjct: 16 LESEKYKANKDKGNPEIYNKINSQDKAIEK----------FKLLIKAQMAERVKKLHSQE 65
Query: 472 KKKKKKKKKKKK 483
KK++KKK KKKK
Sbjct: 66 KKEEKKKPKKKK 77
Score = 35.5 bits (82), Expect = 0.035
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 434 RNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
R +++ + + G E + +++ EK K K + ++ KK +E++EEK
Sbjct: 11 RVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEK 70
Query: 494 KK 495
KK
Sbjct: 71 KK 72
Score = 33.6 bits (77), Expect = 0.14
Identities = 11/55 (20%), Positives = 23/55 (41%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPK 508
+++G E K ++K +K K K + E ++ + KK ++ K
Sbjct: 23 ANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKK 77
Score = 33.6 bits (77), Expect = 0.17
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMM 499
E EK K K K + K +++ EK K+++
Sbjct: 17 ESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIK 51
Score = 31.3 bits (71), Expect = 1.0
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEE 487
K K KK KK KKKKK++
Sbjct: 194 HYKGDKSSAKKDKKSKKKKKKKRS 217
Score = 30.9 bits (70), Expect = 1.2
Identities = 7/48 (14%), Positives = 22/48 (45%)
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
E E+ + K+K + K +++ E+ + M +++++ +
Sbjct: 17 ESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQ 64
Score = 30.1 bits (68), Expect = 2.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKK 483
+ ++ KK+KK KKKKKKK+
Sbjct: 194 HYKGDKSSAKKDKKSKKKKKKKRS 217
Score = 29.8 bits (67), Expect = 3.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEE 486
+ +K KK KK KKKKKK+
Sbjct: 194 HYKGDKSSAKKDKKSKKKKKKKRS 217
Score = 29.8 bits (67), Expect = 3.1
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMM 498
E E+ K K + + K +++ E+ + K M
Sbjct: 17 ESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQM 54
Score = 29.0 bits (65), Expect = 5.6
Identities = 12/58 (20%), Positives = 25/58 (43%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
E+ + ++ E K + K +K K + + E KK K+ +++PK+
Sbjct: 18 SEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKK 75
>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase,
non-specific RNA binding region part 2. This is a
region found N terminal to the catalytic domain of
glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes
but not in Escherichia coli. This region is thought to
bind RNA in a non-specific manner, enhancing
interactions between the tRNA and enzyme, but is not
essential for enzyme function.
Length = 83
Score = 33.5 bits (77), Expect = 0.032
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMM 499
E + +K+KKK+KKK + K ++ E+ + M M
Sbjct: 19 EADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSEGAMFM 58
Score = 32.7 bits (75), Expect = 0.064
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLHR 513
E + K+KKK+KKKK + + ++ E+ + M M+ E H+
Sbjct: 19 EADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSEGAMFMEGFL---GEKFHK 68
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 35.7 bits (83), Expect = 0.033
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEE 490
EEEKEKKK K++KK K+++E+ EE
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
Score = 34.9 bits (81), Expect = 0.051
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 467 EKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
E++KEKKK K++KK +EE+E+ E+ ++ + +
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEPYGYCLVDGHKEK 134
Score = 33.0 bits (76), Expect = 0.27
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEE 486
EE+E++K KE+KK K++K+K EE
Sbjct: 96 EEKEKKKAMSKEEKKAIKEEKEKLEEP 122
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 118
Score = 34.2 bits (79), Expect = 0.034
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 441 TPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKK------KKKKKKKKKKEEEEEEEEEKK 494
T R G EE E + +E+E++K+KKKE + ++KKK++ E ++ EE+KK
Sbjct: 57 TRGGRKGKTAREEAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKEELAELRKKFEEDKK 116
Query: 495 KM 496
++
Sbjct: 117 RI 118
Score = 27.2 bits (61), Expect = 8.6
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 18/64 (28%)
Query: 461 EEEEEKEKKKEKKK-------------KKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRP 507
++ EE+EK++ K+ + +K K EE E + K+K +K +++
Sbjct: 31 DKREEEEKEEAKEARNEPDEDGFVTVTRGGRKGKTAREEAVEAKAKEK-----EKKKKKK 85
Query: 508 KEFL 511
KE
Sbjct: 86 KELE 89
>gnl|CDD|240380 PTZ00362, PTZ00362, hypothetical protein; Provisional.
Length = 479
Score = 36.3 bits (84), Expect = 0.035
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 472 KKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
KKKKKKKKK KE + KK + M R++
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNE 47
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 34.6 bits (80), Expect = 0.035
Identities = 21/45 (46%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKK--KKEEEEEEEEEKKK 495
EE++ + EE+ +K K++KKK+KKKKKK KK ++EE+E K
Sbjct: 73 EEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKS 117
Score = 31.6 bits (72), Expect = 0.46
Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 453 EEEEEEGEEEEEEKE---KKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKI 503
E +E+ ++E E++E K++EKK+K ++K KK + +++++KKK KK
Sbjct: 53 ELMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKG 106
Score = 30.0 bits (68), Expect = 1.2
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 26/87 (29%)
Query: 406 REERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEE 465
++E ++ +++REE+++ EE+ ++ + +++
Sbjct: 60 KKETEDEEFQQKREEKKRKD--------------------------EEKTAKKRAKRQKK 93
Query: 466 KEKKKEKKKKKKKKKKKKEEEEEEEEE 492
K+KKK+KKK KK KK+++E + EE
Sbjct: 94 KQKKKKKKKAKKGNKKEEKEGSKSSEE 120
Score = 30.0 bits (68), Expect = 1.5
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 35/96 (36%)
Query: 399 DSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEE 458
K + EE +K+ E++R++ EK T ++R
Sbjct: 58 KWKKETEDEEFQQKREEKKRKDEEK-----------------TAKKR------------- 87
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
+++KKK+KKKKKKK KK ++EE+E +
Sbjct: 88 -----AKRQKKKQKKKKKKKAKKGNKKEEKEGSKSS 118
Score = 28.5 bits (64), Expect = 4.1
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 12/81 (14%)
Query: 404 RKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEE----EEEG 459
+KREE+ RK E+ ++R K Q + ++ ++ G EE+E EE
Sbjct: 70 QKREEKKRKDEEKTAKKRAKRQ--------KKKQKKKKKKKAKKGNKKEEKEGSKSSEES 121
Query: 460 EEEEEEKEKKKEKKKKKKKKK 480
+EEEE E+ K+++ + +K
Sbjct: 122 SDEEEEGEEDKQEEPVEIMEK 142
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 35.4 bits (81), Expect = 0.035
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 364 AELKIKLFCPVFLRHWNRGDYNS----CCRTDLTFKPVPDSKLARKREERLRK-QAERER 418
A L I L PV NR Y++ R + V + +K+ +R+ Q E+ R
Sbjct: 73 AVLFIFLTTPVASHLINRAAYDTGVPLAIRIRDQLRSVKKDDIKKKKSLIIRQEQIEKAR 132
Query: 419 EEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKK 478
+ERE+ + ER++ RR E++EE+E E EE+ E++ + + +
Sbjct: 133 QEREELE-----------ERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEII 181
Query: 479 KKKKKEEEEEEEEEKK 494
++ + E E ++++ +K
Sbjct: 182 EQDESETESDDDKTEK 197
Score = 31.2 bits (70), Expect = 0.87
Identities = 12/45 (26%), Positives = 33/45 (73%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
+E+ E+ +E EE E++ E +++++K +++++EE+E E +++ +
Sbjct: 125 QEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTI 169
Score = 28.9 bits (64), Expect = 5.2
Identities = 12/45 (26%), Positives = 32/45 (71%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
+E+ E+ +E EE +E+ + +++++K +++ +EE+E E E++ +
Sbjct: 125 QEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTI 169
>gnl|CDD|217023 pfam02414, Borrelia_orfA, Borrelia ORF-A. This protein is encoded
by an open reading frame in plasmid borne DNA repeats of
Borrelia species. This protein is known as ORF-A. The
function of this putative protein is unknown.
Length = 285
Score = 35.8 bits (83), Expect = 0.037
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKI 503
EE +++ K EK K KK KK + +++ K K++ ++K
Sbjct: 145 EESKKKNSKNIEKLKIKKYFKKCNFKTNLKKDIKIKLLKIIKIE 188
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 34.7 bits (80), Expect = 0.040
Identities = 7/40 (17%), Positives = 9/40 (22%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
+ E KKKK + E E
Sbjct: 107 NAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAA 146
Score = 34.3 bits (79), Expect = 0.053
Identities = 7/40 (17%), Positives = 10/40 (25%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
E + + KKKK + E E
Sbjct: 107 NAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAA 146
Score = 32.0 bits (73), Expect = 0.32
Identities = 7/42 (16%), Positives = 11/42 (26%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
E + G E KKK+ + + E
Sbjct: 109 ALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAA 150
Score = 31.6 bits (72), Expect = 0.50
Identities = 5/40 (12%), Positives = 10/40 (25%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
E + + +KKK + + E
Sbjct: 107 NAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAA 146
Score = 31.2 bits (71), Expect = 0.56
Identities = 7/41 (17%), Positives = 11/41 (26%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
E +G E KK+K + + E
Sbjct: 108 AALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAA 148
Score = 30.0 bits (68), Expect = 1.7
Identities = 6/42 (14%), Positives = 9/42 (21%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
E E K+KK + + E
Sbjct: 107 NAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAA 148
Score = 29.3 bits (66), Expect = 3.1
Identities = 6/43 (13%), Positives = 13/43 (30%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E + E K+KK + + E +++
Sbjct: 112 EADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEE 154
Score = 28.9 bits (65), Expect = 3.7
Identities = 7/36 (19%), Positives = 9/36 (25%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E + + KKKK E E
Sbjct: 107 NAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPA 142
Score = 28.1 bits (63), Expect = 6.7
Identities = 6/44 (13%), Positives = 13/44 (29%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
E + E +K+K + + E E++
Sbjct: 111 AEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEE 154
>gnl|CDD|217089 pfam02535, Zip, ZIP Zinc transporter. The ZIP family consists of
zinc transport proteins and many putative metal
transporters. The main contribution to this family is
from the Arabidopsis thaliana ZIP protein family these
proteins are responsible for zinc uptake in the plant.
Also found within this family are C. elegans proteins of
unknown function which are annotated as being similar to
human growth arrest inducible gene product, although
this protein in not found within this family.
Length = 314
Score = 35.8 bits (83), Expect = 0.040
Identities = 17/121 (14%), Positives = 25/121 (20%), Gaps = 27/121 (22%)
Query: 19 DAQEIMHHSSHHSSSVHHHS----------------EHSKQTISHSTSSSATSVQHKMKR 62
+A E + S H E + S H
Sbjct: 59 EALEALESSPCLGDHGPWHPFAGLIVLLGFFLVLLVEK----LLTYYKGRGHSHGHDHGH 114
Query: 63 GTSPALSQAGLSHVASATLSQTTSSSVSTNHGPQSHSHHHQHSHHHHHQTATASPPASAI 122
SH S S+V + + HHH H + I
Sbjct: 115 DGEH-------SHTVPDEESGAVESNVVHHEHGEGPHHHHHEGHEKGESDKESGLRVRDI 167
Query: 123 S 123
+
Sbjct: 168 A 168
Score = 29.2 bits (66), Expect = 4.8
Identities = 14/76 (18%), Positives = 21/76 (27%), Gaps = 5/76 (6%)
Query: 88 SVSTNHGPQSHSHHHQHSHHHHHQTATASPPASAISGSKSRGIGDPIPNHILLSEHKPRP 147
+ T + + HSH H H H H + A+ + P+H H
Sbjct: 96 KLLTYYKGRGHSHGHDHGHDGEHSHTVPDEESGAVESNVVHHEHGEGPHH-----HHHEG 150
Query: 148 SESQSSSSAQPPSSSP 163
E S
Sbjct: 151 HEKGESDKESGLRVRD 166
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 34.3 bits (79), Expect = 0.040
Identities = 18/30 (60%), Positives = 25/30 (83%)
Query: 466 KEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
KEK K+KK+KKKKKKKKK++ ++ +KKK
Sbjct: 106 KEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 33.1 bits (76), Expect = 0.12
Identities = 15/36 (41%), Positives = 27/36 (75%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EE++ K+ KEK K+KK+KKKKK++++++ +K
Sbjct: 96 EEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAA 131
Score = 30.4 bits (69), Expect = 1.1
Identities = 13/29 (44%), Positives = 23/29 (79%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKK 483
+E+ ++++++K+KKK+KKK KK KKK
Sbjct: 106 KEKAKQKKQKKKKKKKKKKKTSKKAAKKK 134
Score = 30.0 bits (68), Expect = 1.2
Identities = 14/30 (46%), Positives = 25/30 (83%)
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
+++ K++K+KKKKKKKKKK+ ++ ++KK
Sbjct: 106 KEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 30.0 bits (68), Expect = 1.3
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 466 KEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
++K ++KK+KKKKKKKK+++ ++ KKK
Sbjct: 105 LKEKAKQKKQKKKKKKKKKKKTSKKAAKKK 134
Score = 29.7 bits (67), Expect = 1.6
Identities = 13/30 (43%), Positives = 24/30 (80%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKK 483
+E+ + ++++++K+KKK+KK KK KKKK
Sbjct: 106 KEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 28.9 bits (65), Expect = 3.1
Identities = 11/30 (36%), Positives = 24/30 (80%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKK 481
+E+ +++ ++++++K+KKK+ KK KKKK
Sbjct: 106 KEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 28.1 bits (63), Expect = 5.9
Identities = 12/30 (40%), Positives = 24/30 (80%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKK 482
+E+ ++ ++++++K+KKK+K KK KKKK
Sbjct: 106 KEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7). RRP7
is an essential protein in yeast that is involved in
pre-rRNA processing and ribosome assembly. It is
speculated to be required for correct assembly of rpS27
into the pre-ribosomal particle.
Length = 131
Score = 34.5 bits (80), Expect = 0.041
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 14/59 (23%)
Query: 463 EEEKEKKKEKKKKKKKKKK---------KKEEEEEE-----EEEKKKMMMMMKKIRRRP 507
EE+ K KEKKKKKKK+ + KK+EE E EE+KK++ + + +P
Sbjct: 72 AEERRKLKEKKKKKKKELENFYRFQIREKKKEELAELRKKFEEDKKRIEQLKAARKFKP 130
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase.
Length = 379
Score = 36.0 bits (83), Expect = 0.043
Identities = 18/55 (32%), Positives = 19/55 (34%), Gaps = 5/55 (9%)
Query: 64 TSPALSQAGLSHVASATLSQTTSSSVSTNHGPQSHSHHHQHSHHH-HHQTATASP 117
TSPA G LS + SS P S HH H HHH H
Sbjct: 7 TSPAAPLLGHLI----ELSLISFSSKIATSYPHSIHHHSHHHHHHKHPDDGKKVS 57
>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic. This model
describes the eukaryotic 60S (cytosolic) ribosomal
protein L7 and paralogs that may or may not also be L7.
Human, Drosophila, and Arabidopsis all have both a
typical L7 and an L7-related paralog. This family is
designated subfamily rather than equivalog to reflect
these uncharacterized paralogs. Members of this family
average ~ 250 residues in length, somewhat longer than
the archaeal L30P/L7E homolog (~ 155 residues) and much
longer than the related bacterial/organellar form (~ 60
residues).
Length = 235
Score = 35.4 bits (82), Expect = 0.044
Identities = 15/57 (26%), Positives = 33/57 (57%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
+E + ++ K KKK KKK+K K+ E +E + ++ ++ +K++ ++P +F
Sbjct: 10 RQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKKPGKF 66
>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992). This
bacterial family of proteins has no known function.
However, the cis-regulatory yjdF motif, just upstream
from the gene encoding the proteins for this family, is
a small non-coding RNA, Rfam:RF01764. The yjdF motif is
found in many Firmicutes, including Bacillus subtilis.
In most cases, it resides in potential 5' UTRs of
homologues of the yjdF gene whose function is unknown.
However, in Streptococcus thermophilus, a yjdF RNA motif
is associated with an operon whose protein products
synthesise nicotinamide adenine dinucleotide (NAD+).
Also, the S. thermophilus yjdF RNA lacks typical yjdF
motif consensus features downstream of and including the
P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the
S. thermophilus RNAs might sense a distinct compound
that structurally resembles the ligand bound by other
yjdF RNAs. On the ohter hand, perhaps these RNAs have an
alternative solution forming a similar binding site, as
is observed with some SAM riboswitches.
Length = 132
Score = 34.1 bits (79), Expect = 0.046
Identities = 14/38 (36%), Positives = 27/38 (71%)
Query: 469 KKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
K E ++ K++KKK+ +E++EEE+E+K+ + KK +
Sbjct: 92 KLEHERNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKH 129
Score = 33.0 bits (76), Expect = 0.12
Identities = 15/39 (38%), Positives = 28/39 (71%)
Query: 468 KKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
K + ++ K++KKK+ KE++EEE+E K+++ KK + R
Sbjct: 92 KLEHERNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130
Score = 30.7 bits (70), Expect = 0.70
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 466 KEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
E ++ K++KKK+ K+KKEEE+E + + K+
Sbjct: 93 LEHERNKQEKKKRSKEKKEEEKERKRQLKQQ 123
Score = 29.5 bits (67), Expect = 1.6
Identities = 12/23 (52%), Positives = 20/23 (86%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKK 482
E++EEEKE+K++ K++KKK K +
Sbjct: 108 EKKEEEKERKRQLKQQKKKAKHR 130
Score = 28.4 bits (64), Expect = 4.2
Identities = 13/34 (38%), Positives = 27/34 (79%)
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E E+ K+++KK+ K+KK+++KE + + +++KKK
Sbjct: 93 LEHERNKQEKKKRSKEKKEEEKERKRQLKQQKKK 126
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 35.8 bits (83), Expect = 0.046
Identities = 16/58 (27%), Positives = 25/58 (43%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
E+E+ E EEE+ E + KE+ K + + EE +E E K +E
Sbjct: 20 EDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGGGGEEEEEE 77
Score = 33.9 bits (78), Expect = 0.19
Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 23/103 (22%)
Query: 418 REEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEK----- 472
RE + + L E++ EEE+ E + +EE +K +
Sbjct: 5 REALAELAKELRKLTED--EKLAE----------AEEEKAEYDALKEEIDKLDAEIDRLE 52
Query: 473 ------KKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
+ K + EEEEEE K + +R
Sbjct: 53 ELLDELEAKPAASGEGGGGEEEEEEAKAEAAEFRAYLRGGDDA 95
Score = 31.9 bits (73), Expect = 0.67
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
+E +E E K+ +K + ++ E E EEK + + ++I + E
Sbjct: 1 LKELREALAELAKELRKLTEDEKLAEAE-EEKAEYDALKEEIDKLDAEI 48
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 36.2 bits (83), Expect = 0.046
Identities = 11/35 (31%), Positives = 24/35 (68%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
+ +E+K EKK +K++K KK +E+ E++ + ++
Sbjct: 126 SDVEEEKTEKKVRKRRKVKKMDEDVEDQGSESEVS 160
Score = 34.6 bits (79), Expect = 0.14
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
Query: 409 RLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEK 468
+ + A EE ++ A +R+ +R T + EE E E+ +K
Sbjct: 50 KKIESALAVDEEPDENGAVSKKKPTRSVKR-ATKKTVVEISEPLEEGSELVVNEDAALDK 108
Query: 469 KKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPK 508
+ KK ++ ++K + EEEK + KK+R+R K
Sbjct: 109 E-SKKTPRRTRRKAAAASSDVEEEKTE-----KKVRKRRK 142
>gnl|CDD|218771 pfam05835, Synaphin, Synaphin protein. This family consists of
several eukaryotic synaphin 1 and 2 proteins.
Synaphin/complexin is a cytosolic protein that
preferentially binds to syntaxin within the SNARE
complex. Synaphin promotes SNAREs to form precomplexes
that oligomerise into higher order structures. A peptide
from the central, syntaxin binding domain of synaphin
competitively inhibits these two proteins from
interacting and prevents SNARE complexes from
oligomerising. It is thought that oligomerisation of
SNARE complexes into a higher order structure creates a
SNARE scaffold for efficient, regulated fusion of
synaptic vesicles. Synaphin promotes neuronal exocytosis
by promoting interaction between the complementary
syntaxin and synaptobrevin transmembrane regions that
reside in opposing membranes prior to fusion.
Length = 139
Score = 34.5 bits (79), Expect = 0.047
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 446 GGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEE 489
GG E +E + EE+EE +E +E ++++K K +K EEE E
Sbjct: 20 LGGKEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREV 63
Score = 28.7 bits (64), Expect = 3.4
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERI---DTPRRRGGGGGGEEEEEEEG 459
+ E+ ++A RE EE KA+ ER R + G EE+EEE
Sbjct: 31 DAEEEDEEIQEALREAEEERKAKHR-----KMEEEREVMRQGIRDKYGIKKKEEDEEEPQ 85
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKI 503
EEE+ + KKK ++ + EE+EEEEEK +K +
Sbjct: 86 AAAEEEEGRLGRKKKTPEELAAEAGEEDEEEEEKSGFPTQLKDL 129
Score = 27.9 bits (62), Expect = 6.8
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 14/61 (22%)
Query: 446 GGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKK--------------KKKKEEEEEEEE 491
G EEE+EE E E +E++K K +K +++ KKK+E+EEE +
Sbjct: 27 GDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREVMRQGIRDKYGIKKKEEDEEEPQA 86
Query: 492 E 492
Sbjct: 87 A 87
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 35.7 bits (83), Expect = 0.048
Identities = 21/106 (19%), Positives = 44/106 (41%), Gaps = 19/106 (17%)
Query: 399 DSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEE 458
D ++ + L ++ + EE EK + + L + ++
Sbjct: 328 DFPELKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLP------------------ 369
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIR 504
E+ E+ EK E K+K ++ ++ EEE +E +E+ + + KI
Sbjct: 370 -PEKREQLEKLLETKEKLSEELEELEEELKELKEELESLYSEGKIS 414
Score = 28.4 bits (64), Expect = 9.4
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKK----KKKEEEEEEEEEKKKMMMMMKKIRRR 506
EEE + EEE EK KK KK KK + +K+E+ E+ E K+K+ ++++
Sbjct: 340 EEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSEELEELEEE 396
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this family
(Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 33.4 bits (77), Expect = 0.048
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 12/46 (26%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRR 505
E +EEEK +++E+ K+ K K+++ EE ++KI++
Sbjct: 2 ERKEEEKAQREEELKRLKNLKREEIEE------------KLEKIKK 35
Score = 29.5 bits (67), Expect = 1.2
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKK 483
+E +EEE + EEE ++ K K+++ ++K +K
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEK 32
Score = 29.2 bits (66), Expect = 1.5
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEE 486
E +EEE+ + EEE K K K+++ ++K +K ++
Sbjct: 2 ERKEEEKAQREEELKRLKNLKREEIEEKLEKIKKV 36
Score = 28.4 bits (64), Expect = 3.1
Identities = 18/106 (16%), Positives = 43/106 (40%), Gaps = 24/106 (22%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEE- 461
RK EE+ +++ E +R + K + E+++ ++ G G + EE+ +
Sbjct: 2 ERKEEEKAQREEELKRLKNLKREEIE--------EKLEKIKKVAGLRGADLSEEDLADGD 53
Query: 462 ---------------EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
++ +E+ +E+K + + +E+EE
Sbjct: 54 FDPEKWDEEMAKLFGDDYYEEEDEEEKPTWDDDEDIGDLVPDEDEE 99
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is functionally
equivalent to L7/L12 in bacteria and the P1 and P2
proteins in eukaryotes. L12p is homologous to P1 and P2
but is not homologous to bacterial L7/L12. It is located
in the L12 stalk, with proteins L10, L11, and 23S rRNA.
L12p is the only protein in the ribosome to occur as
multimers, always appearing as sets of dimers. Recent
data indicate that most archaeal species contain six
copies of L12p (three homodimers), while eukaryotes have
four copies (two heterodimers), and bacteria may have
four or six copies (two or three homodimers), depending
on the species. The organization of proteins within the
stalk has been characterized primarily in bacteria,
where L7/L12 forms either two or three homodimers and
each homodimer binds to the extended C-terminal helix of
L10. L7/L12 is attached to the ribosome through L10 and
is the only ribosomal protein that does not directly
interact with rRNA. Archaeal L12p is believed to
function in a similar fashion. However, hybrid ribosomes
containing the large subunit from E. coli with an
archaeal stalk are able to bind archaeal and eukaryotic
elongation factors but not bacterial elongation factors.
In several mesophilic and thermophilic archaeal species,
the binding of 23S rRNA to protein L11 and to the
L10/L12p pentameric complex was found to be
temperature-dependent and cooperative.
Length = 106
Score = 33.6 bits (77), Expect = 0.048
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 469 KKEKKKKKKKKKKKKEEEEEEEEE 492
E+K ++K+++KKKEEE+EEEEE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEE 96
Score = 33.2 bits (76), Expect = 0.075
Identities = 14/26 (53%), Positives = 22/26 (84%)
Query: 467 EKKKEKKKKKKKKKKKKEEEEEEEEE 492
+EK ++K+++KKK+EE+EEEEEE
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 32.1 bits (73), Expect = 0.15
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEE 489
E+K E+K+++KKK+++KEEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 31.3 bits (71), Expect = 0.28
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEE 488
+EK +EK+++KKK+++K+EEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 31.3 bits (71), Expect = 0.35
Identities = 11/27 (40%), Positives = 23/27 (85%)
Query: 470 KEKKKKKKKKKKKKEEEEEEEEEKKKM 496
++K ++K+++KK+EEE+EEEE++ +
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEEAL 99
Score = 29.8 bits (67), Expect = 1.1
Identities = 11/27 (40%), Positives = 22/27 (81%)
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEE 490
++K ++K+++KKK++++EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 29.8 bits (67), Expect = 1.3
Identities = 9/27 (33%), Positives = 22/27 (81%)
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEE 487
E++ ++++++KKK+++K++EEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 29.4 bits (66), Expect = 1.4
Identities = 12/27 (44%), Positives = 22/27 (81%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEE 486
EEK ++KE++KKK+++K+++EEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 28.6 bits (64), Expect = 2.6
Identities = 9/27 (33%), Positives = 23/27 (85%)
Query: 471 EKKKKKKKKKKKKEEEEEEEEEKKKMM 497
++K ++K+++K++EEE+EEE+++ +
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEEAL 99
Score = 27.1 bits (60), Expect = 9.8
Identities = 10/21 (47%), Positives = 18/21 (85%)
Query: 451 GEEEEEEEGEEEEEEKEKKKE 471
EE+ EE+ EE+++E+EK++E
Sbjct: 74 AEEKAEEKEEEKKKEEEKEEE 94
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 35.8 bits (83), Expect = 0.048
Identities = 11/53 (20%), Positives = 33/53 (62%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRR 505
E + + + + +++ +K + K+KK+E+++EE++KK++ + ++I +
Sbjct: 302 LFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEK 354
Score = 33.1 bits (76), Expect = 0.36
Identities = 11/43 (25%), Positives = 27/43 (62%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
E + + + + K ++ +K + K+KKKE+++EE+++K+
Sbjct: 302 LFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQ 344
Score = 30.8 bits (70), Expect = 1.9
Identities = 16/96 (16%), Positives = 51/96 (53%)
Query: 408 ERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKE 467
E+L+++ + + + ++ + + + + + + E +E ++E++++E
Sbjct: 280 EKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEE 339
Query: 468 KKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKI 503
KKK++ ++ +++ +K E + ++EE K + + KI
Sbjct: 340 KKKKQIERLEERIEKLEVQATDKEENKTVALGTSKI 375
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 36.3 bits (84), Expect = 0.049
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 407 EERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEK 466
EE++ QA E +E E + D +EE++EE E + +
Sbjct: 2 EEQVNTQANEEEDEEELEAVA-----RSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAE 56
Query: 467 EKKKEKKKKKKKKKKKKEEEEE--EEEEKKKMMMMMKKIRRRPKEFL 511
K+EK + K+ KK+KK+E ++ E++ M K + R K L
Sbjct: 57 ISKREKARLKELKKQKKQEIQKILEQQNAAIDADMNNKGKGRLKYLL 103
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 35.5 bits (82), Expect = 0.049
Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 449 GGGEEEEEEEGEEEEEEKEKKKE--KKKKKKKKKKKKEEEEEEEEEKKKMM 497
+++ ++ + E+E +E K KK++ ++K++EEEE+ EE+K
Sbjct: 128 SDSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKAAEEEKARE 178
Score = 33.2 bits (76), Expect = 0.27
Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 417 EREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEE-------EKEKK 469
E ++ E D +++ +++ E+E EK KK
Sbjct: 97 EDDDEEDEIKRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSEDETAALLRELEKIKK 156
Query: 470 KEKKKKKKKKKKKKEEEEEEEEEK 493
+ ++K++++++K EEE+ EE+
Sbjct: 157 ERAEEKEREEEEKAAEEEKAREEE 180
Score = 28.9 bits (65), Expect = 5.4
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 402 LARKREERLRKQAEREREER-EKAQASMCNLLSRNP 436
L + ++ER ++ E E+ E+ +A +L+ NP
Sbjct: 151 LEKIKKERAEEKEREEEEKAAEEEKAREEEILTGNP 186
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 35.5 bits (82), Expect = 0.049
Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 23/138 (16%)
Query: 388 CRTDLTFKP-------VPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERID 440
C ++TFK V +S R E + + ER E+E+ + + + + R
Sbjct: 83 CLNEITFKTDPKNTDYVVESGATRNYEADKLDEEQEERVEKEREEELAGDAMKKLENRTA 142
Query: 441 TPRRRGGGGGGEEEEEEEGEEEEEEKEKKKE-------KKKKKKKKKKKKEEEEEEEEEK 493
+R E E E EE +E + ++ + + +++KK+++EEEEE+E
Sbjct: 143 DSKR-------EMEVLERLEELKELQSRRADVDVNSMLEALFRREKKEEEEEEEEDEALI 195
Query: 494 KKMM--MMMKKIRRRPKE 509
K + ++ RRR +
Sbjct: 196 KSLSFGPETEEDRRRADD 213
Score = 31.3 bits (71), Expect = 1.2
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 15/97 (15%)
Query: 399 DSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEE 458
DSK + ERL + E + + SM L R ++EEEEE
Sbjct: 143 DSKREMEVLERLEELKELQSRRADVDVNSMLEALFRR---------------EKKEEEEE 187
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EE+E + + ++ +++ +E+ E++EE
Sbjct: 188 EEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDND 224
Score = 29.7 bits (67), Expect = 3.9
Identities = 23/99 (23%), Positives = 32/99 (32%), Gaps = 6/99 (6%)
Query: 398 PDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEE 457
+S L R +K+ E E EE E S+ E RRR E++EE+
Sbjct: 169 VNSML-EALFRREKKEEEEEEEEDEALIKSL--SFGPETEED---RRRADDEDSEDDEED 222
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
+ K KK + E K K
Sbjct: 223 NDNTPSPKSGSSSPAKPTSILKKSAAKRSEAPSSSKAKK 261
>gnl|CDD|220535 pfam10037, MRP-S27, Mitochondrial 28S ribosomal protein S27.
Members of this family of small ribosomal proteins
possess one of three conserved blocks of sequence found
in proteins that stimulate the dissociation of guanine
nucleotides from G-proteins, leaving open the
possibility that MRP-S27 might be a functional partner
of GTP-binding ribosomal proteins.
Length = 417
Score = 35.9 bits (83), Expect = 0.050
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 400 SKLARKREERLRKQAEREREEREKAQA---SMCNLLSRNPERIDTPRRRGGGGGGEEEEE 456
K +K E L + E +E R K QA L ER+ T E+E+
Sbjct: 326 EKSKQKFEPLLAQYGESFQEWRSKLQALAKVESRSLLSVEERLPT---------IEKEDL 376
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E E+ ++ + K ++KKK +++ +EE ++ +
Sbjct: 377 ELYEQRQQLWFFENRKLWQRKKKLREQADEEYQQRHATR 415
>gnl|CDD|184416 PRK13955, mscL, large-conductance mechanosensitive channel;
Provisional.
Length = 130
Score = 34.0 bits (78), Expect = 0.050
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 477 KKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
K KK+EE+EEE E K ++ +IR K+
Sbjct: 92 KLTSKKEEEKEEEIPEPTKEEELLGEIRDLLKQ 124
>gnl|CDD|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor. The
spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and
U5) and proteins, catalyzes the excision of introns from
pre-mRNAs in two successive trans-esterification
reactions. Step 2 depends upon integral spliceosome
constituents such as U5 snRNA and Prp8 and
non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22.
ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a
conformational change in the spliceosome that leads to
protection of the 3'ss from targeted RNase H cleavage.
This change, which probably reflects binding of the 3'ss
PyAG in the catalytic centre of the spliceosome,
requires the ordered recruitment of Slu7, Prp18, and
Prp22 to the spliceosome. There is a close functional
relationship between Prp8, Prp18, and Slu7, and Prp18
interacts with Slu7, so that together they recruit Prp22
to the spliceosome. Most members of the family carry a
zinc-finger of the CCHC-type upstream of this domain.
Length = 236
Score = 35.1 bits (81), Expect = 0.053
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 15/84 (17%)
Query: 408 ERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKE 467
E LRK+ + ++E+ + + +LL + GG E ++ E + E
Sbjct: 159 ELLRKKEKEKKEQLKIQKKQ--SLLEKY-------------GGEEHLDKPPKELLLGQSE 203
Query: 468 KKKEKKKKKKKKKKKKEEEEEEEE 491
E + KKKK K + EE+
Sbjct: 204 DYVEYDRAGKKKKAKSKYEEDVFI 227
Score = 32.0 bits (73), Expect = 0.52
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
E +E EE EK +E +KK K KK+ ++ + E+E +++
Sbjct: 17 SEYKEVVEEYEKLEELRKKLKAKKEDDSDDTDYEDEDEEL 56
Score = 28.6 bits (64), Expect = 8.2
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
+E+E+KE+ K +KK+ +K EE ++ +
Sbjct: 164 KEKEKKEQLKIQKKQSLLEKYGGEEHLDKPPK 195
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 35.6 bits (83), Expect = 0.053
Identities = 9/42 (21%), Positives = 26/42 (61%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
++ +EE +E + + +++++++++++EEE EEE
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 35.2 bits (82), Expect = 0.068
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
+++ EE +E + + ++++++++EEEEEE E
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSE 318
Score = 34.5 bits (80), Expect = 0.13
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
++ +EE KE + + +++++EEEEEEEEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPS 317
Score = 33.7 bits (78), Expect = 0.22
Identities = 8/42 (19%), Positives = 24/42 (57%)
Query: 449 GGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEE 490
+ +EE E + + ++++++++++++EE EEE
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 32.1 bits (74), Expect = 0.66
Identities = 9/42 (21%), Positives = 26/42 (61%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
+++ +E +E + + ++++++++++EEEE EEE
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 31.4 bits (72), Expect = 1.0
Identities = 7/42 (16%), Positives = 23/42 (54%)
Query: 448 GGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEE 489
+EE + + + E++++++++++++E EEE
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 31.0 bits (71), Expect = 1.4
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
++ +E+ K+ + + +++EEEEEEEEE++
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEP 316
Score = 30.6 bits (70), Expect = 1.9
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ + +EE ++ + + ++++EEEEEEEEE+
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPS 317
>gnl|CDD|240578 cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-processing protein 7
homolog A (Rrp7A) and similar proteins. The family
corresponds to the RRP7 domain of Rrp7A, also termed
gastric cancer antigen Zg14, and similar proteins which
are yeast ribosomal RNA-processing protein 7 (Rrp7p)
homologs mainly found in Metazoans. The cellular
function of Rrp7A remains unclear currently. Rrp7A
harbors an N-terminal RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7
domain.
Length = 129
Score = 33.8 bits (78), Expect = 0.055
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 444 RRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKK-------KKKKKKKKEEEEEEEEEKKKM 496
++G +E + E+EK+KKK+K+ K ++ K+ + E ++ EE KK
Sbjct: 57 KKGRRPKTARKESVAAKAAEKEKKKKKKKELKNFYRFQIRESKRNELAELRKKFEEDKKR 116
Query: 497 MMMMKKIRR-RP 507
+ ++K R+ +P
Sbjct: 117 IALLKAARKFKP 128
Score = 28.8 bits (65), Expect = 3.0
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 11/52 (21%)
Query: 455 EEEEGEEEEEEKEKKKEK-----------KKKKKKKKKKKEEEEEEEEEKKK 495
EE + EEEEE++EK+KE KK ++ K +KE + EK+K
Sbjct: 28 EEYDKEEEEEKEEKEKEAEPDEDGWVTVTKKGRRPKTARKESVAAKAAEKEK 79
>gnl|CDD|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface
glycoprotein C-terminal domain. The trypanosome
parasite expresses these proteins to evade the immune
response.
Length = 98
Score = 33.2 bits (76), Expect = 0.055
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 7/58 (12%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK-------KKMMMMM 500
G ++ + + ++ K KK KK KK + E K KK + +
Sbjct: 32 GKAKKNGAPVTQTAGTETTTEKCKGKKDKKDCKKGCKWEGNTCKDSSFLVNKKFALSV 89
Score = 31.6 bits (72), Expect = 0.18
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 449 GGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEE 490
G ++ + E +K K KK KK KK + E
Sbjct: 32 GKAKKNGAPVTQTAGTETTTEKCKGKKDKKDCKKGCKWEGNT 73
Score = 30.9 bits (70), Expect = 0.43
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 449 GGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
+ E +E+G + +++++ K K K+ K KK + E
Sbjct: 5 NKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETT 50
Score = 28.9 bits (65), Expect = 1.9
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+++E+ K K K+ K KK + E +K
Sbjct: 19 DKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEK 53
Score = 28.2 bits (63), Expect = 3.7
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ E +E + ++KE + K K+ K KK + +
Sbjct: 5 NKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETT 50
Score = 27.8 bits (62), Expect = 4.0
Identities = 6/38 (15%), Positives = 18/38 (47%)
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
E + ++ + + +K K KK++++ ++ K
Sbjct: 31 EGKAKKNGAPVTQTAGTETTTEKCKGKKDKKDCKKGCK 68
Score = 27.8 bits (62), Expect = 4.9
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ +E++ + + K+ K KK + E E+ K
Sbjct: 19 DKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKG 56
Score = 27.8 bits (62), Expect = 5.0
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
++ E++ + K K+ + KK + E E+ K K
Sbjct: 19 DKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGK 57
>gnl|CDD|218660 pfam05620, DUF788, Protein of unknown function (DUF788). This
family consists of several eukaryotic proteins of
unknown function.
Length = 166
Score = 34.6 bits (80), Expect = 0.058
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 445 RGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKK 476
G + E E + ++++K EK+ +K
Sbjct: 135 LGPFASLPSSQGAETNETKSKRQEKLEKRGEK 166
Score = 34.2 bits (79), Expect = 0.071
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKK 479
+G E E K K++EK +K+ +K
Sbjct: 142 PSSQGAETNETKSKRQEKLEKRGEK 166
Score = 31.9 bits (73), Expect = 0.42
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKK 483
+ E + K K+++K +K+ +K
Sbjct: 142 PSSQGAETNETKSKRQEKLEKRGEK 166
Score = 31.5 bits (72), Expect = 0.62
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKK 480
E E + K+++K +K+ +K
Sbjct: 142 PSSQGAETNETKSKRQEKLEKRGEK 166
Score = 29.2 bits (66), Expect = 3.0
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKK 482
+ E E K ++++K +K+ +K
Sbjct: 142 PSSQGAETNETKSKRQEKLEKRGEK 166
>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein. SOG2 proteins in
Saccharomyces cerevisiae are involved in cell separation
and cytokinesis.
Length = 419
Score = 35.5 bits (82), Expect = 0.058
Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 5/121 (4%)
Query: 48 STSSSATSVQHKMKRGTSPALSQAGLSHVASATLSQTTSSSVSTNHGP----QSHSHHHQ 103
+ SS +QH+ + + + S + + + S + + P +S S+
Sbjct: 144 AWSSLGPPLQHRKRDAVTASPSSMIARNTPISDRLRPRSVTPTRGRRPSSSPRSLSNPTT 203
Query: 104 HSHHHHHQTATASPPASAISGSKSRGIGDPIPNHILLSEHKPRPSESQ-SSSSAQPPSSS 162
+ Q T PP + S+S + I+ S PR ES S+ ++ S +
Sbjct: 204 LESPSNLQVTTDVPPPYSNGTSRSSTMSSSANLSIISSLATPRSGESFRSTPTSGSSSIN 263
Query: 163 P 163
P
Sbjct: 264 P 264
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 35.9 bits (82), Expect = 0.060
Identities = 13/49 (26%), Positives = 29/49 (59%)
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
+++EEKE+ + ++ K+++ KKE+E E+ K + ++R K+
Sbjct: 1027 KDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKK 1075
Score = 30.1 bits (67), Expect = 3.3
Identities = 12/46 (26%), Positives = 27/46 (58%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
E+E E + +EE+ KKEK+++++ +K + +E +++ K
Sbjct: 1031 EKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKK 1076
Score = 29.7 bits (66), Expect = 4.8
Identities = 13/50 (26%), Positives = 30/50 (60%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMK 501
++EE+E E + KE++ KK+K+++++ +K + +E KK + +
Sbjct: 1028 DQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKKR 1077
>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit. This
family includes the vacuolar ATP synthase E subunit, as
well as the archaebacterial ATP synthase E subunit.
Length = 195
Score = 34.6 bits (80), Expect = 0.061
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 450 GGEEEEEE---EGEEE-EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRR 505
EE+ EE E EEE E EK + E+ +KK ++ +K+E++ E E++ + + R
Sbjct: 5 EAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAEMEKQIIISNAKNEARL 64
Query: 506 R 506
+
Sbjct: 65 K 65
Score = 33.9 bits (78), Expect = 0.12
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
E EEE E E+ E ++ EKK ++ +KK+K+ E E++ + +E
Sbjct: 15 AEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAEMEKQIIISNAKNEARLKVLNARE 71
Score = 30.0 bits (68), Expect = 1.9
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKKKKKEEE---EEEEEEKKKMMMMMKKI 503
+E EE+ EE + E++ + +K + +E E EE E+K+K M K+I
Sbjct: 3 RQEAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAEMEKQI 53
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 35.8 bits (83), Expect = 0.065
Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Query: 401 KLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGE 460
ERL + ER + RE+ Q + L + E + + EEE EE E
Sbjct: 396 ASLNNEIERLEARLERLEDRRERLQQEI-EELLKKLEEAELKELQAELEELEEELEELQE 454
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
E E +E +E +++ ++ ++ + E E + + + +++++
Sbjct: 455 ELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQEN 500
Score = 34.6 bits (80), Expect = 0.16
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 17/97 (17%)
Query: 399 DSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEE 458
+R E L +Q E E+ E A + E ++ EE E E
Sbjct: 832 RIAATERRLEDLEEQIEELSEDIESLAAEI--------EELEELI---------EELESE 874
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E E+ +E + + ++ EE E E K+
Sbjct: 875 LEALLNERASLEEALALLRSELEELSEELRELESKRS 911
Score = 33.5 bits (77), Expect = 0.31
Identities = 23/113 (20%), Positives = 48/113 (42%), Gaps = 15/113 (13%)
Query: 399 DSKLARKREERLRKQAEREREEREK--AQASMCNLLSRNPERIDTPRRRGGGGGGEEEEE 456
+ ++ ++E E R E++K + + NL R E + E + E
Sbjct: 280 EEEIEELQKELYALANEISRLEQQKQILRERLANL-ERQLEEL------------EAQLE 326
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
E + +E E+ E ++K ++ K++ E E E EE + + ++ +E
Sbjct: 327 ELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379
Score = 30.0 bits (68), Expect = 3.5
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 401 KLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGE 460
++ R+R L +Q E + E+ + S + L+ + EE+ EE E
Sbjct: 305 QILRERLANLERQLEELEAQLEELE-SKLDELAEELAEL------------EEKLEELKE 351
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E E + + +E + + ++ + + EE EE+ E +
Sbjct: 352 ELESLEAELEELEAELEELESRLEELEEQLETLRS 386
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 35.3 bits (81), Expect = 0.066
Identities = 18/97 (18%), Positives = 45/97 (46%), Gaps = 19/97 (19%)
Query: 399 DSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEE 458
D ++ R++ Q + +K + +R + EE + ++
Sbjct: 56 DPGAVVQQYGRIQSQ----QSSAKKGEQ----------QRKKKEEQVA-----EELKPKQ 96
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E+E K+ +KE+ K ++++K+ +E E++ + E+K+
Sbjct: 97 AAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQ 133
Score = 34.5 bits (79), Expect = 0.12
Identities = 19/93 (20%), Positives = 49/93 (52%), Gaps = 20/93 (21%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
+ ++R +K+ E+ EE + QA+ ER+ ++ E+E + +
Sbjct: 75 KKGEQQRKKKE-EQVAEELKPKQAA-------EQERL------------KQLEKERLKAQ 114
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E++K+ ++ +K+ + ++K+++E+ + E+KK
Sbjct: 115 EQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKK 147
Score = 32.6 bits (74), Expect = 0.42
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 404 RKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEE 463
+++EE+ RK A ++++ E A+A ++ + ++ + EE + + E
Sbjct: 132 KQQEEQARKAAAEQKKKAEAAKAKAAAEAAK--LKAAAEAKKKAEEAAKAAEEAKAKAEA 189
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+KK E + K +K K E E + + EKK
Sbjct: 190 AAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKA 221
Score = 32.2 bits (73), Expect = 0.68
Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 10/103 (9%)
Query: 407 EERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEK 466
+ERL++ + + +E+ + + E+ ++ + E+ ++ E K
Sbjct: 100 QERLKQLEKERLKAQEQQKQA------EEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAK 153
Query: 467 EKKKEKKKKKK----KKKKKKEEEEEEEEEKKKMMMMMKKIRR 505
K + K K KKK +E + EE K K K +
Sbjct: 154 AKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKA 196
Score = 29.5 bits (66), Expect = 4.1
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 4/93 (4%)
Query: 405 KREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGE---E 461
K +K+AE + E+A+A + + + E E + + E E
Sbjct: 164 KAAAEAKKKAEEAAKAAEEAKAK-AEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAE 222
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
E++ EKKK K K K + E+K
Sbjct: 223 AAAEEKAAAEKKKAAAKAKADKAAAAAKAAERK 255
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 140
Score = 33.7 bits (78), Expect = 0.067
Identities = 15/62 (24%), Positives = 39/62 (62%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLH 512
E+ E+E ++ +E+ +K + ++KK+KE +++ +E ++K + + +++R +E L
Sbjct: 35 EKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQKLQQDLQKRQQEELQ 94
Query: 513 RI 514
+I
Sbjct: 95 KI 96
Score = 29.9 bits (68), Expect = 1.3
Identities = 13/47 (27%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 460 EEEEEEKEK---KKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKI 503
E E+KEK KK ++ ++K++K +++ ++ ++EE +K++ + K
Sbjct: 57 EAAREKKEKELQKKVQEFQRKQQKLQQDLQKRQQEELQKILDKINKA 103
Score = 29.1 bits (66), Expect = 2.6
Identities = 14/58 (24%), Positives = 35/58 (60%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
E+E ++ + E E+ EK+ +K K+K +K E E+++K++ +++ +R+ ++
Sbjct: 24 EKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQKL 81
Score = 28.3 bits (64), Expect = 4.6
Identities = 23/105 (21%), Positives = 49/105 (46%), Gaps = 27/105 (25%)
Query: 401 KLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGE 460
K +KR+ L K + ++ +EK Q LS E E
Sbjct: 25 KEFKKRQAELEKLEKELQKLKEKLQKDA-ATLS----------------------EAARE 61
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRR 505
++E+E +KK ++ ++K++K ++ ++ ++EE +K ++ KI +
Sbjct: 62 KKEKELQKKVQEFQRKQQKLQQDLQKRQQEELQK----ILDKINK 102
>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy
production and conversion].
Length = 194
Score = 34.7 bits (80), Expect = 0.067
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
EE EE E+ +EE +++ E+ ++ +K +KE E E + ++ ++ KE
Sbjct: 23 LEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRKLLEAKE 80
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 35.3 bits (81), Expect = 0.067
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 5/98 (5%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
A+ + L KQ EE + + + + + G EE EE EE
Sbjct: 101 AKAKAAALAKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEET 160
Query: 463 EEEKEKKKEKKKKKKK-----KKKKKEEEEEEEEEKKK 495
++EK K K K K K+K E E EE ++
Sbjct: 161 DKEKAKAKAAAAAKAKAAALAKQKAAEAGEGTEEVTEE 198
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 35.5 bits (82), Expect = 0.071
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
++E + EGE + K KK KK KKK K K E+ + K
Sbjct: 80 KKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNK 121
Score = 35.1 bits (81), Expect = 0.081
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
E +K+ +K+KKKKK+KK+ K E E + + K KK +PK
Sbjct: 64 NESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKP 111
Score = 34.7 bits (80), Expect = 0.11
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E++ E +++ EKKK+KKK+KK+ K + E + + KK
Sbjct: 60 EDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKS 99
Score = 33.5 bits (77), Expect = 0.28
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E EEE K KK KK+ K + +++ E+++KKK
Sbjct: 37 EILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKK 77
Score = 33.5 bits (77), Expect = 0.28
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPK 508
E E+E K KK KK+ K E +++ EKKK KK ++ PK
Sbjct: 37 EILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKK---KKKKEKKEPK 84
Score = 33.5 bits (77), Expect = 0.29
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E++ E ++ E++K+KKKEKK+ K + + K + ++ +K K
Sbjct: 59 KEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTK 103
Score = 33.2 bits (76), Expect = 0.29
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EEE + +K+KK++K + KKK +KK+++++E++E K
Sbjct: 42 FSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKS 85
Score = 33.2 bits (76), Expect = 0.35
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKK 502
+E++E + E E + K +K KK KKK K + E+ + K+ + +K
Sbjct: 77 KKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELAEK 128
Score = 32.0 bits (73), Expect = 0.82
Identities = 13/61 (21%), Positives = 30/61 (49%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
+++++E+ E + E + K K KK KK KKK + + E+ + ++ + +
Sbjct: 73 KKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELAEKSNVY 132
Query: 511 L 511
+
Sbjct: 133 I 133
Score = 31.2 bits (71), Expect = 1.5
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+E EEE + +K KK+ K + K++ E+++++KK+
Sbjct: 35 SKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKE 79
Score = 30.8 bits (70), Expect = 1.9
Identities = 10/41 (24%), Positives = 26/41 (63%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E + + E+++K+KK++K+ K + + K + ++ ++ KK
Sbjct: 64 NESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKK 104
Score = 30.8 bits (70), Expect = 1.9
Identities = 11/45 (24%), Positives = 28/45 (62%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E +++ E+++++K++KKE K + + K K ++ ++ +KK
Sbjct: 62 KNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKP 106
Score = 28.5 bits (64), Expect = 8.4
Identities = 8/38 (21%), Positives = 22/38 (57%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEE 487
E +++ ++++++KEKK+ K + + K K ++
Sbjct: 62 KNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKS 99
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 35.5 bits (83), Expect = 0.071
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
+ EEE KE+ + K+ +++E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 35.5 bits (83), Expect = 0.075
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
+ EEE K++ + K+ ++KE++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 34.4 bits (80), Expect = 0.16
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEE 489
+ EEE +++ E K+ ++K+K+ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 34.0 bits (79), Expect = 0.22
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEE 488
+ EE KE+ + K+ ++K+KK E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 33.2 bits (77), Expect = 0.31
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEE 485
+ EEE +E+ E K+ ++K+KK +K E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 32.5 bits (75), Expect = 0.60
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
+ +E+ K++ + K+ EE+E++ EK
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 32.5 bits (75), Expect = 0.62
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
+ E+E K++ + K+ EE+E++ E+
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 32.1 bits (74), Expect = 0.85
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ E++ K++ + KE EE+E++ +K
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 31.7 bits (73), Expect = 1.0
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKE 484
+ EEE +E+ + ++ ++K+KK +K E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 30.9 bits (71), Expect = 2.0
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEE 487
+ E E +++ + K+ ++K+KK E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 29.8 bits (68), Expect = 4.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKK 482
+ EEE +E+ E KE ++K+KK +K
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 29.4 bits (67), Expect = 5.0
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEE 486
+ EE +E+ + K+ ++K+KK ++ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 35.3 bits (82), Expect = 0.072
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 463 EEEKEKKKEKKKKKKKKKKKK 483
E+KEK+KEK K KK+ + K
Sbjct: 400 AEKKEKEKEKPKVKKRHRDTK 420
Score = 34.9 bits (81), Expect = 0.11
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKI--RRRPK 508
EK+ K KK K+ +KKE+E+E+ + KK+ K I RR+P
Sbjct: 382 APSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKR-HRDTKNIGKRRKPS 429
Score = 34.1 bits (79), Expect = 0.16
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
E++E+EKEK K KK+ + K K + E+
Sbjct: 401 EKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 33.8 bits (78), Expect = 0.20
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 466 KEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPK 508
K ++K K KK K E++E+E++K K R R
Sbjct: 381 KAPSEKKTGKPSKKVLAKRAEKKEKEKEKP----KVKKRHRDT 419
Score = 33.4 bits (77), Expect = 0.31
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
E +E+E+EK K K++ + K K+++ EE
Sbjct: 400 AEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 32.2 bits (74), Expect = 0.60
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEE 490
E+ E+E+E+ + KK + K K++K EE
Sbjct: 400 AEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 32.2 bits (74), Expect = 0.71
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEE 489
E++ +E+E+ K KK+ + K K++K EE
Sbjct: 400 AEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 31.5 bits (72), Expect = 1.2
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEE 487
E++E+ +E+ + K++ ++ K K++K EE
Sbjct: 400 AEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
>gnl|CDD|234941 PRK01315, PRK01315, putative inner membrane protein translocase
component YidC; Provisional.
Length = 329
Score = 35.1 bits (81), Expect = 0.074
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 21/88 (23%)
Query: 396 PVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEE 455
P P S A REERL K+ + E K A G +
Sbjct: 259 PTPGSPAAIAREERLAKKGKDHGESEGKVVAP---------------------EGAVAQT 297
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKKKKK 483
E E+ + + ++++ K++ + K++K
Sbjct: 298 TEVREQTKRQTVQRQQPKRQSRAKRQKG 325
>gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812). This is
a family of fungal proteins whose function is not known.
Length = 126
Score = 33.4 bits (77), Expect = 0.081
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E E ++ + +EKK +++ K++ EE +E E EKKK
Sbjct: 91 ERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 27.2 bits (61), Expect = 8.8
Identities = 9/29 (31%), Positives = 23/29 (79%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKK 480
+EE++ +EEE +++ ++ K+++++KKK
Sbjct: 98 ARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 27.2 bits (61), Expect = 9.1
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
+E E + + E+KK +++ K++ EE +E E +KK
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
>gnl|CDD|221122 pfam11490, DNA_pol3_alph_N, DNA polymerase III polC-type
N-terminus. This is an N-terminal domain of DNA
polymerase III polC subunit A that is found only in
Firmicutes. DNA polymerase polC-type III enzyme
functions as the 'replicase' in low G + C Gram-positive
bacteria. Purine asymmetry is a characteristic of
organisms with a heterodimeric DNA polymerase III
alpha-subunit constituted by polC which probably plays a
direct role in the maintenance of strand-biased gene
distribution; since, among prokaryotic genomes, the
distribution of genes on the leading and lagging strands
of the replication fork is known to be biased. The
domain is associated with DNA_pol3_alpha pfam07733.
Length = 180
Score = 34.2 bits (79), Expect = 0.087
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEE 487
EE EE+ EEEE + ++ + KKK+ +KKK+E+E
Sbjct: 146 EEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEKE 180
Score = 30.8 bits (70), Expect = 1.1
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKK 478
EEEE + EE E +KK+ +KKKK+K
Sbjct: 153 EEEEAKLAEEALEALKKKEAEKKKKEK 179
Score = 30.0 bits (68), Expect = 1.9
Identities = 17/40 (42%), Positives = 29/40 (72%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
EEE EE EE++EE+E K ++ + KKK+ E++++E+E
Sbjct: 141 SEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEKE 180
Score = 29.6 bits (67), Expect = 2.4
Identities = 17/42 (40%), Positives = 30/42 (71%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
+E EEE EE EE+KE+++ K ++ + KK+E E++++EK
Sbjct: 138 DESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEK 179
>gnl|CDD|129022 smart00786, SHR3_chaperone, ER membrane protein SH3. This family
of proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). Shr3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of Shr3, AAPs are retained in the ER.
Length = 196
Score = 34.3 bits (79), Expect = 0.090
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKK 482
EE EE +E KK +K + KKKK
Sbjct: 166 EEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 32.7 bits (75), Expect = 0.29
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKE 484
++EE E +E K+ +K + KKK+
Sbjct: 164 QKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 31.6 bits (72), Expect = 0.66
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E ++ ++++E E++K+ KK ++ E KKK
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKK 195
Score = 29.7 bits (67), Expect = 2.6
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 461 EEEEEKEKKK----EKKKKKKKKKKKKEEEEEEEEEKKK 495
E ++ K+K++ E+K+ KK ++ E +KKK
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 35.0 bits (81), Expect = 0.093
Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 451 GEE--EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
GEE E E + EE ++E +K +EK ++ + + +KKEEE E+ + K
Sbjct: 87 GEENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNK 131
Score = 34.6 bits (80), Expect = 0.14
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
EE E E + +E KKE KK ++K ++ + E E++EEE +K
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAK 129
Score = 32.7 bits (75), Expect = 0.51
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFL 511
EE ++E ++ EE+ E+ + + +KK+++ +K + + ++ KK KK E L
Sbjct: 98 EELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKL----AKKYDSNLSEAL 152
Score = 32.3 bits (74), Expect = 0.78
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
GEE E + + +E KK+ KK ++K E+ E E E+K++ + K
Sbjct: 87 GEENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLD 134
Score = 31.5 bits (72), Expect = 1.1
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EE E E + EE +K+ +K ++K ++ + + E++EEE EK K
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAK 129
Score = 29.2 bits (66), Expect = 6.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E +E+ +KEKK +K ++E ++ E E K
Sbjct: 405 ELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKA 440
Score = 28.8 bits (65), Expect = 8.8
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E + + + +KEKK +K +K+ K+ E E + +K+
Sbjct: 404 AELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKE 444
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 35.1 bits (81), Expect = 0.096
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ E E +E E K+ KKKKKKKKKKK++ E +
Sbjct: 37 DAFLAELISENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLAY 79
Score = 33.9 bits (78), Expect = 0.18
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
E E +E E ++ +KKKKKKKKKKKK E +
Sbjct: 38 AFLAELISENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLAYD 80
Score = 33.9 bits (78), Expect = 0.19
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFL 511
+ E E +E + K+ KKKKKKKKKKKK+ E + + ++ + +
Sbjct: 37 DAFLAELISENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSAAFQDNSHI 96
Query: 512 HRI 514
++
Sbjct: 97 RKL 99
Score = 33.5 bits (77), Expect = 0.24
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
++++ E E +E + ++ KKKKKKKKK++++ E
Sbjct: 34 DDDDAFLAELISENQEAENKQNNKKKKKKKKKKKKKNLGEAYD 76
Score = 31.6 bits (72), Expect = 0.96
Identities = 10/44 (22%), Positives = 26/44 (59%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ ++++ E + ++ E K+ KKKKKKK++++++ +
Sbjct: 32 DVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKKKNLGEAY 75
Score = 31.2 bits (71), Expect = 1.5
Identities = 11/45 (24%), Positives = 24/45 (53%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
E E E ++++++ K++ KKK KK KK ++++ +
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELIS 45
Score = 30.8 bits (70), Expect = 1.6
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
++++ E E ++ + K+ KKKKKKKK+++++ E
Sbjct: 33 VDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKKKNLGEAYD 76
Score = 30.8 bits (70), Expect = 2.1
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 449 GGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
E E E +++++ K+K +KK KK KK ++ E +
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQ 48
Score = 30.5 bits (69), Expect = 2.5
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+++ E ++ + K+ KKKKKKKKKK+++ E
Sbjct: 35 DDDAFLAELISENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLA 78
>gnl|CDD|165339 PHA03046, PHA03046, Hypothetical protein; Provisional.
Length = 142
Score = 33.6 bits (77), Expect = 0.10
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKI 503
++EE ++ + +EK ++ KK+ + EEEE + +KKI
Sbjct: 12 DDEENDRNEHREKTSEEDGHYKKRLDVEEEEPNLINIRNEIKKI 55
Score = 29.0 bits (65), Expect = 3.8
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFL 511
G+++EE + +K ++ KK + EEEE + IR K+ +
Sbjct: 10 GDDDEENDRNEHREKTSEEDGHYKKRLDVEEEEPN------LINIRNEIKKII 56
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 32.6 bits (75), Expect = 0.11
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 448 GGGGEEEEEEEGEEEEEEKEKKKE 471
EE++ EEEEEE++++ E
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESE 94
Score = 31.8 bits (73), Expect = 0.21
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 467 EKKKEKKKKKKKKKKKKEEEEEEEEE 492
E+KK++++++++KEE EEE
Sbjct: 74 AAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 31.5 bits (72), Expect = 0.27
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 452 EEEEEEEGEEEEEEKEKKKE 471
EE++E EEEEEEKE+ +E
Sbjct: 76 AAEEKKEEEEEEEEKEESEE 95
Score = 30.3 bits (69), Expect = 0.71
Identities = 7/24 (29%), Positives = 18/24 (75%)
Query: 467 EKKKEKKKKKKKKKKKKEEEEEEE 490
++KK+++++++++EE EEE
Sbjct: 73 AAAAAEEKKEEEEEEEEKEESEEE 96
Score = 30.3 bits (69), Expect = 0.75
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
+EKK++++++++K+E EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 29.9 bits (68), Expect = 0.89
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEK 472
EE +EEEEE+E+K+E
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEES 93
Score = 29.9 bits (68), Expect = 0.99
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 451 GEEEEEEEGEEEEEEKEKKKE 471
EE++EE EEEEE++E ++E
Sbjct: 76 AAEEKKEEEEEEEEKEESEEE 96
Score = 29.5 bits (67), Expect = 1.3
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 471 EKKKKKKKKKKKKEEEEEEEEE 492
++KK++++EEEE+EE E
Sbjct: 73 AAAAAEEKKEEEEEEEEKEESE 94
Score = 29.5 bits (67), Expect = 1.4
Identities = 5/29 (17%), Positives = 18/29 (62%)
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEE 490
+++K++++++++K++ EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 29.5 bits (67), Expect = 1.4
Identities = 5/29 (17%), Positives = 18/29 (62%)
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEE 489
++K+++++++++K++ EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 29.5 bits (67), Expect = 1.4
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKK 473
E ++EEEE+E++KE+
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEES 93
Score = 27.6 bits (62), Expect = 6.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 476 KKKKKKKKEEEEEEEEEKK 494
++KK+EEEEEEE+E+
Sbjct: 75 AAAEEKKEEEEEEEEKEES 93
Score = 27.2 bits (61), Expect = 7.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 477 KKKKKKKEEEEEEEEEKKK 495
++KKEEEEEEEE+++
Sbjct: 75 AAAEEKKEEEEEEEEKEES 93
Score = 27.2 bits (61), Expect = 9.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 475 KKKKKKKKKEEEEEEEEEK 493
++KK++EEEEEE+EE
Sbjct: 75 AAAEEKKEEEEEEEEKEES 93
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 32.2 bits (74), Expect = 0.12
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 475 KKKKKKKKKEEEEEEEEE 492
+++KK+EEEEEEE++
Sbjct: 64 AAAEEEKKEEEEEEEEDD 81
Score = 31.8 bits (73), Expect = 0.12
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 471 EKKKKKKKKKKKKEEEEEEEEE 492
+++KKEEEEEEEE+
Sbjct: 59 AAAAAAAAEEEKKEEEEEEEED 80
Score = 31.4 bits (72), Expect = 0.17
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 470 KEKKKKKKKKKKKKEEEEEEEE 491
+++KK++EEEEEE++
Sbjct: 60 AAAAAAAEEEKKEEEEEEEEDD 81
Score = 30.3 bits (69), Expect = 0.51
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 469 KKEKKKKKKKKKKKKEEEEEEE 490
+++KK+++EEEEE++
Sbjct: 60 AAAAAAAEEEKKEEEEEEEEDD 81
Score = 30.3 bits (69), Expect = 0.52
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 446 GGGGGGEEEEEEEGEEEEEEKE 467
EEE +EEEEE+E
Sbjct: 57 AAAAAAAAAAEEEKKEEEEEEE 78
Score = 29.9 bits (68), Expect = 0.59
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 467 EKKKEKKKKKKKKKKKKEEEEEE 489
+++KK++++EEEE++
Sbjct: 59 AAAAAAAAEEEKKEEEEEEEEDD 81
Score = 28.7 bits (65), Expect = 1.9
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 446 GGGGGGEEEEEEEGEEEEEEKE 467
EE ++EEEE+E
Sbjct: 56 AAAAAAAAAAAEEEKKEEEEEE 77
Score = 28.4 bits (64), Expect = 2.6
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 474 KKKKKKKKKKEEEEEEEEEKKKMM 497
+++++EEEEEEE+ M
Sbjct: 60 AAAAAAAEEEKKEEEEEEEEDDDM 83
Score = 28.0 bits (63), Expect = 3.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 446 GGGGGGEEEEEEEGEEEEEEKE 467
EEE+ EEEEEE+E
Sbjct: 58 AAAAAAAAAEEEKKEEEEEEEE 79
Score = 27.6 bits (62), Expect = 3.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 446 GGGGGGEEEEEEEGEEEEEEKE 467
EEE++ EEEEEE++
Sbjct: 59 AAAAAAAAEEEKKEEEEEEEED 80
Score = 27.2 bits (61), Expect = 5.5
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 452 EEEEEEEGEEEEEE 465
EE++EEE EEEE++
Sbjct: 68 EEKKEEEEEEEEDD 81
Score = 27.2 bits (61), Expect = 6.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 446 GGGGGGEEEEEEEGEEEEEEKE 467
EEE++E EEEEEE +
Sbjct: 60 AAAAAAAEEEKKEEEEEEEEDD 81
>gnl|CDD|218454 pfam05132, RNA_pol_Rpc4, RNA polymerase III RPC4. Specific subunit
for Pol III, the tRNA specific polymerase.
Length = 131
Score = 33.0 bits (76), Expect = 0.12
Identities = 10/52 (19%), Positives = 21/52 (40%)
Query: 441 TPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
P + +EE E+ E+ EKK+ KK+ ++ + + +
Sbjct: 14 LPGLKPPAEVKPTKEETVKTEQAEDGEKKESKKESSAEETAEDKPCTLRDLP 65
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 34.6 bits (80), Expect = 0.12
Identities = 18/63 (28%), Positives = 39/63 (61%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFL 511
+E E EEE + KKK +K ++K+K+ +E E+ EE+K++ +++I+++ ++
Sbjct: 303 LKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLE 362
Query: 512 HRI 514
R+
Sbjct: 363 KRL 365
Score = 32.3 bits (74), Expect = 0.56
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 406 REERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEE 465
R E+L ++ + N R ++ T + R E+E+ E E+
Sbjct: 288 RTEKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIR-------EKEKRLEELEQNL 340
Query: 466 KEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E++KE K ++ +KK E+ E+ E+ K
Sbjct: 341 IEERKELNSKLEEIQKKLEDLEKRLEKLKS 370
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 33.1 bits (76), Expect = 0.13
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 13/93 (13%)
Query: 405 KREERLRKQAERE--REEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
K +ER + ER+ REER++ L R + EE+ E E E+
Sbjct: 43 KEKEREERIEERKRIREERKQELEKQ--LKERKE----ALKLLEEENDDEEDAETEDTED 96
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E+ E + + EEE +E+K K
Sbjct: 97 VEDDEWEGF-----PEPTVTDYEEEYIDEDKYK 124
Score = 28.1 bits (63), Expect = 5.2
Identities = 10/49 (20%), Positives = 29/49 (59%)
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLH 512
+ ++K +E+ K+K+++++ +E + EE K+++ +K+ + K
Sbjct: 33 QRRKKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALKLLEE 81
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 34.7 bits (80), Expect = 0.14
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 400 SKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEG 459
L + EE L ++ + E EK + + L S E + + EE
Sbjct: 311 RALLEELEE-LLEKLKSLEERLEKLEEKLEKLESELEELAEEKNEL-------AKLLEER 362
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
+E EE+ ++ EK+ +K ++ K+ EE +E +++
Sbjct: 363 LKELEERLEELEKELEKALERLKQLEEAIQELKEELA 399
Score = 34.0 bits (78), Expect = 0.24
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
Query: 400 SKLARKREERLRKQAE--REREEREKAQASMCNLLSRNPERIDTPRRRGGG--GGGEEEE 455
KL K E+ + E E+ E K L E ++ + EE
Sbjct: 332 EKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAI 391
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+E EE E +E +++ ++ +K+ EE E E EE ++
Sbjct: 392 QELKEELAELSAALEEIQEELEELEKELEELERELEELEE 431
Score = 34.0 bits (78), Expect = 0.24
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Query: 399 DSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEE 458
+ +L EE R++ E E E + L + EE +EE
Sbjct: 480 ELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLEL---------EEALKEE 530
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
EE+ E+ E E+ ++ K+K + ++ +EE +
Sbjct: 531 LEEKLEKLENLLEELEELKEKLQLQQLKEELRQ 563
Score = 32.8 bits (75), Expect = 0.55
Identities = 22/111 (19%), Positives = 49/111 (44%), Gaps = 14/111 (12%)
Query: 403 ARKREERLRKQ---AEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEG 459
R+ E L K+ E E E + + ++ L E+++ EE E
Sbjct: 499 LREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLE-----------NLLEELEE 547
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
+E+ + ++ KE+ ++ + + ++ +E EE + ++++R R KE
Sbjct: 548 LKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKEL 598
Score = 32.0 bits (73), Expect = 0.86
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 17/90 (18%)
Query: 405 KREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEE 464
K E L++ + + + E+ + LS E I E+ E EEE +
Sbjct: 171 KLSELLKEVIKEAKAKIEELEGQ----LSELLEDI-------------EDLLEALEEELK 213
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
E +K +E ++++++++ ++E E EE +
Sbjct: 214 ELKKLEEIQEEQEEEELEQEIEALEERLAE 243
Score = 29.7 bits (67), Expect = 5.2
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 400 SKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEG 459
L R R RK+ E ER K L +++ + E E E
Sbjct: 573 ELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLEL----SEAENEL 628
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EE EEE E + EK + + ++ + EE EEK +
Sbjct: 629 EEAEEELESELEKLNLQAELEELLQAALEELEEKVE 664
Score = 28.6 bits (64), Expect = 9.5
Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 401 KLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDT--PRRRGGGGGGEEEEEEE 458
+ ++ E+L E E +EK Q R E EE
Sbjct: 529 EELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELL------EELRLLR 582
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
+EE E+ +++ K+ KKK K+ ++ + EE +
Sbjct: 583 TRKEELEELRERLKELKKKLKELEERLSQLEELLQSLE 620
Score = 28.6 bits (64), Expect = 9.7
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
EE E E E EEE + + ++ ++ +K K EE E+ ++K+
Sbjct: 294 EELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKL 338
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 34.4 bits (80), Expect = 0.14
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 448 GGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEE-EEEEEEKKKMMMMMKK 502
G EE +++ +EEEEE E + + +K E+ + ++ KK+ +K
Sbjct: 185 VGSELEELDDDEDEEEEEDENDDSLAADESELPEKVLEKFKALAKQYKKLRKAQEK 240
Score = 30.1 bits (69), Expect = 3.4
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 17/93 (18%)
Query: 435 NPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKK---------KEKKKKKKKKKKKKEE 485
+P + + EEEEE+E ++ E + K K+ KK +K +E+
Sbjct: 181 DPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEKVLEKFKALAKQYKKLRKAQEK 240
Query: 486 EEEE--------EEEKKKMMMMMKKIRRRPKEF 510
+ E + ++K+ +K +R K+
Sbjct: 241 KVEGRLAQHKKYAKLREKLKEELKSLRLTSKQI 273
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 32.9 bits (76), Expect = 0.14
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 472 KKKKKKKKKKKKEEEEEEEEEKKKM 496
K+KKKKKKKKK+ E EE+++K +
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVV 106
Score = 32.5 bits (75), Expect = 0.20
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 473 KKKKKKKKKKKEEEEEEEEEKKKMM 497
K+KKKKKKKKKE E EE++KK ++
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVV 106
Score = 32.1 bits (74), Expect = 0.31
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Query: 466 KEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM-----MMMKKIRRRP--KEFLH 512
++KKK+KKKK+ + ++K+++ EE+K+ ++ I++ P K +L
Sbjct: 83 RKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAVDAALLAAIKKVPLLKGYLK 136
Score = 28.3 bits (64), Expect = 5.7
Identities = 9/46 (19%), Positives = 26/46 (56%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
+++++++ E EEK+KK +++K+ +K + +K ++
Sbjct: 86 KKKKKKKEGEFFEEKKKKYVVSEERKEDQKAVDAALLAAIKKVPLL 131
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 34.6 bits (79), Expect = 0.15
Identities = 15/59 (25%), Positives = 35/59 (59%)
Query: 433 SRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
+R+ D R ++E+E+E +++EE+ E+++E++++ K + EE+E E+
Sbjct: 137 ARHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGED 195
Score = 32.3 bits (73), Expect = 0.77
Identities = 15/59 (25%), Positives = 36/59 (61%)
Query: 437 ERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E +PR +E+E+E+ ++EE+++E+++E+++ K + +E+E E+ +K
Sbjct: 142 EEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEK 200
Score = 30.0 bits (67), Expect = 4.2
Identities = 13/45 (28%), Positives = 31/45 (68%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
+E+E+++ EE++EE+E+++E+ K + ++ E E+ EK ++
Sbjct: 159 DEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEV 203
>gnl|CDD|233042 TIGR00598, rad14, DNA repair protein. All proteins in this family
for which functions are known are used for the
recognition of DNA damage as part of nucleotide excision
repair. This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 172
Score = 33.2 bits (76), Expect = 0.15
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
G EE +EE E EE KE+ KEKK +KK K+ ++ E KK
Sbjct: 91 GSEEALDEEKERREESKEEMKEKKFEKKLKELRRAVRSSEYTNKK 135
>gnl|CDD|221893 pfam13010, pRN1_helical, Primase helical domain. This alpha
helical domain is found in a set of bacterial plasmid
replication proteins. The domain is found to the
C-terminus of the primase/polymerase domain. Mutants of
this domain are defective in template binding,
dinucleotide formation and conformation change prior to
DNA extension.
Length = 135
Score = 32.9 bits (75), Expect = 0.15
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKK---------KKKKEEEEEEEEEKKKMMMMM 500
G++EEE+ E+ E+ KE+ + + K K KK K+ EE +E+KK ++
Sbjct: 1 EGKKEEEDSEEDFEKLKEEMAKYDRFKGKTVEAIREEVCKKIKKSLEELKEKKKAILNTA 60
Query: 501 KKI 503
K +
Sbjct: 61 KGV 63
>gnl|CDD|180505 PRK06278, PRK06278, cobyrinic acid a,c-diamide synthase; Validated.
Length = 476
Score = 34.2 bits (79), Expect = 0.15
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMM 500
+E+EE +K K K+K K + ++EE K K ++++
Sbjct: 204 DEKEEIFKKNKILKEKLKSRSGISTNNKKEERNKPKGIILL 244
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 33.5 bits (77), Expect = 0.15
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKK 482
EE EE E KE++ + +KK+ KKKK
Sbjct: 166 EEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 33.1 bits (76), Expect = 0.19
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 452 EEEEEEEGEEEEEEKE---KKKEKKKKKKKKKKKKE 484
+ + EE EE E K++E + +KK+ KKK+
Sbjct: 161 DAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 32.3 bits (74), Expect = 0.40
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ + E+ +E + K+++ E E++E +KKK
Sbjct: 161 DAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 31.5 bits (72), Expect = 0.59
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEE 485
++ + E EE E K+++ + +KKE
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 30.4 bits (69), Expect = 1.5
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEE---EEEKKK 495
E ++ K ++ ++ + KEEE E +E KKK
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKK 195
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 34.6 bits (80), Expect = 0.16
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 11/81 (13%)
Query: 440 DTPRRRGGGGGGEEEEEEEGEEEEEEKEKK----------KEKKKKKKKKKKKKEEEEEE 489
+ R GGGE++EE+E E+ E +K KK K K +++K K++ E+ EE
Sbjct: 147 ASDDRAAHFGGGEDDEEDEEEQPERKKSKKEVMKEVIAKSKFYKAERQKAKEEDEDLREE 206
Query: 490 -EEEKKKMMMMMKKIRRRPKE 509
+++ K +M +++ ++ PK
Sbjct: 207 LDDDFKDLMSLLRTVKPPPKP 227
Score = 34.2 bits (79), Expect = 0.16
Identities = 15/36 (41%), Positives = 28/36 (77%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEE 487
EE+EE+E ++E+++E+++E+K+KKKKK + E
Sbjct: 355 EEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSE 390
Score = 33.0 bits (76), Expect = 0.45
Identities = 15/38 (39%), Positives = 28/38 (73%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEE 488
EEE+EE+ + ++E+ E+++E++K+KKKKK + E
Sbjct: 353 DEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSE 390
Score = 32.7 bits (75), Expect = 0.52
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 401 KLARKREERLR-KQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEG 459
KL +R R+R ++ + E EE K A + + D G G G E+EEEEE
Sbjct: 273 KLEAERLRRMRGEEEDDEEEEDSKESADDLD----DEFEPDDDDNFGLGQGEEDEEEEED 328
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
++E++E + +++++ +EEE+EE+E
Sbjct: 329 GVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDE 361
Score = 32.3 bits (74), Expect = 0.64
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKK 481
+ ++E++ EEEEEEKEKKK+K + + +
Sbjct: 361 EDSDDEDDEEEEEEEKEKKKKKSAESTRSEL 391
Score = 32.3 bits (74), Expect = 0.66
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 11/101 (10%)
Query: 402 LARKREERLRKQAERER--------EEREKAQASMCNL--LSRNPERIDTPRRRGGGGGG 451
LA++ ERL+K E ER E+ E+ + S + L E D G G
Sbjct: 263 LAKEEAERLKK-LEAERLRRMRGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEE 321
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
+EEEEE+G ++E+E++ + +++++ EEE+EE+E+
Sbjct: 322 DEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDED 362
Score = 31.5 bits (72), Expect = 1.3
Identities = 16/38 (42%), Positives = 29/38 (76%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEE 489
+EEE+EE E+ ++E ++++E+++K+KKKKK E E
Sbjct: 353 DEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSE 390
Score = 30.7 bits (70), Expect = 2.0
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKK 482
E+ ++E+ EEEEEE+++KK+KK + + +
Sbjct: 361 EDSDDEDDEEEEEEEKEKKKKKSAESTRSEL 391
Score = 30.4 bits (69), Expect = 2.5
Identities = 12/38 (31%), Positives = 25/38 (65%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
EEE ++E ++ KK + ++ ++ + EEE++EEE+
Sbjct: 260 EEELAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKE 297
Score = 30.4 bits (69), Expect = 2.9
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
EEE +EE E+ KK E ++ ++ + EEE++EEEE K
Sbjct: 260 EEELAKEEAERLKKLE---AERLRRMRGEEEDDEEEEDSKE 297
Score = 29.6 bits (67), Expect = 4.4
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKK 483
+E+ ++E +EEEEE+EK+K+KKK + + +
Sbjct: 360 DEDSDDEDDEEEEEEEKEKKKKKSAESTRSEL 391
Score = 29.6 bits (67), Expect = 5.5
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
+EEE+ E+E+ + E +E+++++K+KKKKK E E
Sbjct: 351 LSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSE 390
Score = 28.8 bits (65), Expect = 9.8
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKK 480
++E++E EEEEE+++KKK+ + + +
Sbjct: 361 EDSDDEDDEEEEEEEKEKKKKKSAESTRSEL 391
>gnl|CDD|198139 smart01071, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases.and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain.
Expression of a construct consisting of only the
N-terminal domain of Saccharomyces pombe Cdc37 results
in cellular viability. This indicates that interactions
with the cochaperone Hsp90 may not be essential for
Cdc37 function.
Length = 154
Score = 32.8 bits (75), Expect = 0.16
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
+E EE G+ E +E KK + K KK++K+ +++ +E E+E+KK
Sbjct: 97 KELEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEKEEKKK 141
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like :
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB proteins similar to the
monomeric yeast and human topo I. Topo I enzymes are
divided into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. This family may represent more than
one structural domain.
Length = 215
Score = 33.5 bits (77), Expect = 0.17
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 467 EKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
+ +KE+KK K++KK + E+E+ E++
Sbjct: 95 KAQKEEKKAMSKEEKKAIKAEKEKLEEE 122
Score = 32.7 bits (75), Expect = 0.33
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 466 KEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMM 499
K +K+EKK K++KK + E+E+ EE+ ++
Sbjct: 95 KAQKEEKKAMSKEEKKAIKAEKEKLEEEYGFCIL 128
Score = 31.5 bits (72), Expect = 0.67
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEE 490
+ +KE+KK K++KK K ++E+ EEE
Sbjct: 95 KAQKEEKKAMSKEEKKAIKAEKEKLEEE 122
Score = 29.6 bits (67), Expect = 2.8
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEE 486
++EE+K KE+KK K +K+K EEE
Sbjct: 96 AQKEEKKAMSKEEKKAIKAEKEKLEEE 122
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1. This subfamily
represents the eukaryotic large ribosomal protein P1.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P1 is located in the L12 stalk, with proteins
P2, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers) and bacteria may have four or six
copies (two or three homodimers), depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plant species have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site located in the C-terminal
region of P2. TCS inactivates the ribosome by
depurinating a specific adenine in the sarcin-ricin loop
of 28S rRNA.
Length = 103
Score = 31.9 bits (73), Expect = 0.18
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 470 KEKKKKKKKKKKKKEEEEEEEEE 492
+ KK++KKEEEEEE ++
Sbjct: 74 AAAAAAEAKKEEKKEEEEEESDD 96
Score = 29.6 bits (67), Expect = 1.2
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 471 EKKKKKKKKKKKKEEEEEEEEE 492
+ KK++KK+EEEEE +++
Sbjct: 76 AAAAEAKKEEKKEEEEEESDDD 97
Score = 28.4 bits (64), Expect = 3.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 446 GGGGGGEEEEEEEGEEEEEEKE 467
E ++EE+ EEEEEE +
Sbjct: 74 AAAAAAEAKKEEKKEEEEEESD 95
Score = 28.4 bits (64), Expect = 3.3
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 446 GGGGGGEEEEEEEGEEEEEEKE 467
E ++EE +EEEEE+
Sbjct: 73 AAAAAAAEAKKEEKKEEEEEES 94
Score = 28.1 bits (63), Expect = 4.4
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 446 GGGGGGEEEEEEEGEEEEEEKE 467
E ++E ++EEEE+E
Sbjct: 72 AAAAAAAAEAKKEEKKEEEEEE 93
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 34.0 bits (78), Expect = 0.18
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E + ++ + +K+ KK KKK+ K+ K +EEE E E++ K
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESK 182
Score = 31.7 bits (72), Expect = 0.82
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
G E + +K K K+K KK KKK+ K+ ++++EEE +
Sbjct: 141 GIETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESE 176
Score = 31.3 bits (71), Expect = 1.1
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 16/62 (25%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKK----------------KKKKKKKEEEEEEEEEKK 494
G E+E+++ E+ + ++ KK K+K K K+E E+E++E++
Sbjct: 283 GSEDEDDDDEDIDPDQVVKKPVKRKNRRGQRARQAIWEKKYGSGAKHVKKEREKEQKERE 342
Query: 495 KM 496
Sbjct: 343 GR 344
Score = 30.2 bits (68), Expect = 2.5
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
E + KK K KKK KK KKKE +E +++ ++
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEE 174
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of
the RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 33.9 bits (78), Expect = 0.18
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 388 CRTDLTFKPVPDSKLARKREE-------RLRKQAEREREEREKAQASMCNLLSRNPERID 440
R +L + V D RE +LR + +E + R+K +A + + + E +D
Sbjct: 315 SRVELRRRRVNDVIRPLVREHNNDQLNVKLRNPSTKESKMRDKRRARLDPI---DFEEVD 371
Query: 441 TPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
+E EEEEGE+ EEE + +E + + E + ++E
Sbjct: 372 EDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESA 425
Score = 30.9 bits (70), Expect = 1.6
Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 20/99 (20%)
Query: 398 PDSKLARKREERLRK------QAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGG 451
P +K ++ R++R + + E E+ E+ Q S E G
Sbjct: 347 PSTKESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSD----EHEEEE----------GED 392
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEE 490
EEE + E+ + + K K+ + + E
Sbjct: 393 SEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDSE 431
>gnl|CDD|224340 COG1422, COG1422, Predicted membrane protein [Function unknown].
Length = 201
Score = 33.1 bits (76), Expect = 0.18
Identities = 12/51 (23%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEE--EEKKKMMMM 499
+E+ +E + +E +++ +E ++ KK KK +E++ E ++++++M M
Sbjct: 70 DQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKM 120
Score = 32.3 bits (74), Expect = 0.42
Identities = 9/42 (21%), Positives = 27/42 (64%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMK 501
E+ +E ++ KE +K+ ++ ++ + ++ ++ ++K+M MM
Sbjct: 72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDD 113
Score = 31.9 bits (73), Expect = 0.49
Identities = 13/49 (26%), Positives = 29/49 (59%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMM 500
E+ +E + +E +KE ++ ++ KK KK +E++ E + ++ +M M
Sbjct: 72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKM 120
Score = 30.4 bits (69), Expect = 1.8
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKKKKKEE--EEEEEEEKKKMMMMMK 501
E+ E ++ KE +KE ++ ++ KK + +E++ E +MK
Sbjct: 72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMK 119
>gnl|CDD|218517 pfam05236, TAF4, Transcription initiation factor TFIID component
TAF4 family. This region of similarity is found in
Transcription initiation factor TFIID component TAF4.
Length = 255
Score = 33.5 bits (77), Expect = 0.19
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK--------MMMMMKK 502
++EEE E +E E ++ + K+K KEE++ E EE + + +K
Sbjct: 122 QKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEETRHRAANATALAAIGGRK 178
Score = 30.1 bits (68), Expect = 2.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEE 488
EEEE E E ++ + K+K K+++K E EE
Sbjct: 124 EEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
>gnl|CDD|236278 PRK08506, PRK08506, replicative DNA helicase; Provisional.
Length = 472
Score = 33.8 bits (78), Expect = 0.19
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEE 489
E EE+E+EK+ KKE K++++ + K EE E
Sbjct: 392 EREEKEKEKKAKKEGKEERRIHFQNKSIEEAE 423
Score = 33.8 bits (78), Expect = 0.22
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
E EE+EKEKK +K+ K++++ + + EE E
Sbjct: 392 EREEKEKEKKAKKEGKEERRIHFQNKSIEEAE 423
Score = 33.1 bits (76), Expect = 0.40
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 462 EEEEKEKKKEKKKK-KKKKKKKKEEEEEEEEE 492
E EEKEK+K+ KK+ K++++ + + EE E
Sbjct: 392 EREEKEKEKKAKKEGKEERRIHFQNKSIEEAE 423
Score = 29.2 bits (66), Expect = 5.2
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
E +EK+KEKK KK+ K++++ + + E+
Sbjct: 392 EREEKEKEKKAKKEGKEERRIHFQNKSIEE 421
Score = 28.8 bits (65), Expect = 7.9
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEE 488
E E+E+E+K KK+ K++++ + K EE E
Sbjct: 392 EREEKEKEKKAKKEGKEERRIHFQNKSIEEAE 423
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 33.9 bits (77), Expect = 0.20
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 405 KREERLRKQAERERE---EREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEE 461
K++E+ K+ ER+++ E E ++ + L E
Sbjct: 203 KKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPASAASVAEADEASLANTVSGTAPDSE 262
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRP 507
+E K+ + E+ KK K KKKK+ +E+EE++KKK K R
Sbjct: 263 PDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKK-----KHHHHRC 303
Score = 32.3 bits (73), Expect = 0.65
Identities = 26/107 (24%), Positives = 57/107 (53%), Gaps = 11/107 (10%)
Query: 400 SKLARKREERLRKQAEREREEREKAQA----SMCNLLSRNP-------ERIDTPRRRGGG 448
K ++K +++ +K+ E+ER++ +K + S+ L +P E +
Sbjct: 196 EKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPASAASVAEADEASLANTVS 255
Query: 449 GGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
G + E +E ++ E E+ KK K KKKK++K+K+E++++++ +
Sbjct: 256 GTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHR 302
Score = 32.3 bits (73), Expect = 0.74
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E + E+ EKK KK KKK+KKE+E+E +++KKK
Sbjct: 182 ETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKK 220
Score = 32.0 bits (72), Expect = 0.77
Identities = 16/43 (37%), Positives = 33/43 (76%)
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMM 499
E+G+ EK+ KK KKK+KK+K+K++++++++E E K +++
Sbjct: 188 EKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLL 230
Score = 30.8 bits (69), Expect = 2.1
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
E+ + E++ +K KKKEKK+K+K++ K K++E E +
Sbjct: 188 EKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKS 227
Score = 29.6 bits (66), Expect = 4.8
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
EEE + E++K +KK+++K+K+ +++ E +E+
Sbjct: 85 EEERRHRQRLEKDKREKKKREKEKRGRRRHHSLGTESDED 124
Score = 29.6 bits (66), Expect = 4.9
Identities = 14/41 (34%), Positives = 28/41 (68%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E + E+ + +K+ KK KKK+KK+KE+E +++++K+
Sbjct: 182 ETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEV 222
Score = 28.9 bits (64), Expect = 7.5
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
EEE + EK+K+++KK++K+K+ +++ E ++
Sbjct: 85 EEERRHRQRLEKDKREKKKREKEKRGRRRHHSLGTESDE 123
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 34.1 bits (79), Expect = 0.21
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EEEE K++ K++ +++ K + EE E E++
Sbjct: 39 EEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEA 72
Score = 33.7 bits (78), Expect = 0.26
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EEEE KE+ K + +++ K + ++ E EEE K
Sbjct: 39 EEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKA 74
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 31.9 bits (73), Expect = 0.21
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 448 GGGGEEEEEEEGEEEEEEKEKKKE 471
EEEEE EEEEEE+E++ E
Sbjct: 70 AAAAAAEEEEEEEEEEEEEEEESE 93
Score = 31.6 bits (72), Expect = 0.22
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 446 GGGGGGEEEEEEEGEEEEEEKEKKKEK 472
EEE EEEEEE+E+++E
Sbjct: 66 AAAAAAAAAAEEEEEEEEEEEEEEEES 92
Score = 31.2 bits (71), Expect = 0.32
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 447 GGGGGEEEEEEEGEEEEEEKEKKKE 471
EEEEEE EEEEEE+E+ +E
Sbjct: 70 AAAAAAEEEEEEEEEEEEEEEESEE 94
Score = 31.2 bits (71), Expect = 0.37
Identities = 8/23 (34%), Positives = 19/23 (82%)
Query: 470 KEKKKKKKKKKKKKEEEEEEEEE 492
+++++++++++EEEEE EEE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEE 95
Score = 30.8 bits (70), Expect = 0.52
Identities = 7/23 (30%), Positives = 19/23 (82%)
Query: 469 KKEKKKKKKKKKKKKEEEEEEEE 491
++++++++++++EEEE EEE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEE 95
Score = 30.8 bits (70), Expect = 0.52
Identities = 9/26 (34%), Positives = 20/26 (76%)
Query: 471 EKKKKKKKKKKKKEEEEEEEEEKKKM 496
+++++++++EEEEEEE E++ M
Sbjct: 72 AAAAEEEEEEEEEEEEEEEESEEEAM 97
Score = 30.0 bits (68), Expect = 0.86
Identities = 4/25 (16%), Positives = 19/25 (76%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEE 487
+++E++++++++++++ EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 29.2 bits (66), Expect = 1.4
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 9/34 (26%)
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
E+E+++E +++EEEEEE EE
Sbjct: 70 AAAAAAEEEEEEE---------EEEEEEEEESEE 94
Score = 29.2 bits (66), Expect = 1.8
Identities = 5/25 (20%), Positives = 19/25 (76%)
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEE 486
E+++E+++++++++++ EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 28.9 bits (65), Expect = 2.2
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 446 GGGGGGEEEEEEEGEEEEEEKEKKKE 471
EEEEEEE EEEEEE+E ++E
Sbjct: 70 AAAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 27.7 bits (62), Expect = 4.8
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 10/35 (28%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEE 489
EEEEEE+E+++E ++EE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEE----------EEEESEEE 95
Score = 27.7 bits (62), Expect = 6.1
Identities = 9/25 (36%), Positives = 20/25 (80%)
Query: 473 KKKKKKKKKKKEEEEEEEEEKKKMM 497
++++++++EEEEEEEE +++ M
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEEAM 97
>gnl|CDD|225887 COG3351, FlaD, Putative archaeal flagellar protein D/E [Cell
motility and secretion].
Length = 214
Score = 33.3 bits (76), Expect = 0.21
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMK 501
+ ++ +E EE ++ E+ K+ +K EEE E++K M +K
Sbjct: 31 PIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKVMSEKLK 80
Score = 31.4 bits (71), Expect = 0.95
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEE--EEEEEKKKMMMMMKKI 503
EE + + ++E E+ E+ ++ K+ ++ + EE EK+K+M K
Sbjct: 28 EELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKVMSEKLKE 81
Score = 29.4 bits (66), Expect = 4.0
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 8/99 (8%)
Query: 395 KPVPDSKLARKRE---ERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGG 451
KP + K+ + + L + E+ E +A+ S L+ PER + +
Sbjct: 2 KPYLEEKIEKAEKVTAFALEELKEKIEELPIQAKKSDDELVEELPERYEQTKENS----- 56
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEE 490
E+ + EEE EKEK +K K+ + EEEE++
Sbjct: 57 LIEKVDSIEEEISEKEKVMSEKLKEPAQMSSTSEEEEKK 95
Score = 27.9 bits (62), Expect = 9.9
Identities = 6/57 (10%), Positives = 28/57 (49%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
+E+ EE + ++ + + ++ ++ ++ K+ E+ + ++ + +K+ +
Sbjct: 24 KEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKVMSEKLK 80
>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740). This
family consists of several uncharacterized plant
proteins of unknown function.
Length = 565
Score = 33.8 bits (77), Expect = 0.21
Identities = 27/64 (42%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 433 SRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
S P ID R+ EEEEE E EE+E+ +KE K +K EEEEEEE
Sbjct: 120 SIAPPEIDPEPRKPIVPDLVLEEEEEVEMEEDEEYYEKEPGKVVDEKS-----EEEEEEE 174
Query: 493 KKKM 496
K M
Sbjct: 175 LKTM 178
Score = 29.2 bits (65), Expect = 6.0
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRP 507
EEEEE E EE+EE E K+ K +K EEEEEEE + K + ++ ++P
Sbjct: 141 EEEEEVEMEEDEEYYE-----KEPGKVVDEKSEEEEEEELKTMKDFIDLESQTKKP 191
>gnl|CDD|220245 pfam09444, MRC1, MRC1-like domain. This putative domain is found
to be the most conserved region in mediator of
replication checkpoint protein 1.
Length = 145
Score = 32.4 bits (74), Expect = 0.23
Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 409 RLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEK 468
R + ERE +E+E + L + RRRG G E + E E + + K
Sbjct: 60 AKRAEEEREDDEKEVEK------LLDDITTGGLRRRRGKNGLDLELSDSEDELLQRRRLK 113
Query: 469 KKEKKKKKKKKKKKKEEEEEEEEEKKK 495
++E +++ + + ++ + K K
Sbjct: 114 RRELALMRQRLLEDGDLDKLAKNPKSK 140
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 33.7 bits (78), Expect = 0.23
Identities = 20/113 (17%), Positives = 49/113 (43%), Gaps = 25/113 (22%)
Query: 398 PDSKLARKREERLRKQAE----REREEREKAQA---------SMCNLLSRNPERIDTPRR 444
S L+ ER+ K AE +++ +E+ +A S+ L +++
Sbjct: 497 ASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLP---- 552
Query: 445 RGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
E ++++ EE E +++ E + K++ + K +E ++ + ++M
Sbjct: 553 --------EADKKKVEEAIEWLKEELEGEDKEEIEAKTEELQKVVQPIGERMY 597
>gnl|CDD|218747 pfam05786, Cnd2, Condensin complex subunit 2. This family consists
of several Barren protein homologues from several
eukaryotic organisms. In Drosophila Barren (barr) is
required for sister-chromatid segregation in mitosis.
barr encodes a novel protein that is present in
proliferating cells and has homologues in yeast and
human. Mitotic defects in barr embryos become apparent
during cycle 16, resulting in a loss of PNS and CNS
neurons. Centromeres move apart at the
metaphase-anaphase transition and Cyclin B is degraded,
but sister chromatids remain connected, resulting in
chromatin bridging. Barren protein localises to
chromatin throughout mitosis. Colocalisation and
biochemical experiments indicate that Barren associates
with Topoisomerase II throughout mitosis and alters the
activity of Topoisomerase II. It has been suggested that
this association is required for proper chromosomal
segregation by facilitating the decatenation of
chromatids at anaphase. This family forms one of the
three non-structural maintenance of chromosomes (SMC)
subunits of the mitotic condensation complex along with
Cnd1 and Cnd3.
Length = 719
Score = 34.0 bits (78), Expect = 0.24
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 446 GGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
G G E+++EEG + EE+ KKK KKK+++K + E+ E KK
Sbjct: 161 GREGDDGEDDDEEGSDGEEDGAKKKAKKKRQRKPESTLEKNFEALNVKK 209
Score = 31.7 bits (72), Expect = 1.2
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 428 MCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKK 479
+ L+ + + R G G +++EE EE+ K+K K+K+++K +
Sbjct: 145 LLGGLADSDNKEAPETGREGDDGEDDDEEGSDGEEDGAKKKAKKKRQRKPES 196
Score = 30.9 bits (70), Expect = 1.7
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 439 IDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKK 480
+ P G GE+++EE + EE+ +KK +KK+++K +
Sbjct: 155 KEAPETGREGDDGEDDDEEGSDGEEDGAKKKAKKKRQRKPES 196
>gnl|CDD|227238 COG4901, COG4901, Ribosomal protein S25 [Translation, ribosomal
structure and biogenesis].
Length = 107
Score = 31.4 bits (71), Expect = 0.26
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
+ KEKK EK K K KKK +++++EE ++ + + +++ +
Sbjct: 6 QLSKEKKAEKAKAGTAKDKKKWSKKKKKEEARRAVTVDEELLDK 49
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 33.8 bits (78), Expect = 0.27
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
+E E EE E+E E + + K K+E+E EE+
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEED 263
Score = 33.8 bits (78), Expect = 0.28
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEE-----EEKK 494
+E E EE EEE + + E + K K+++E EE+ EEK+
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKE 272
Score = 33.4 bits (77), Expect = 0.32
Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 23/100 (23%)
Query: 396 PVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEE 455
P P K+ + + ERE E + I+T G ++
Sbjct: 218 PSP---FFTKKLKETSETEEREEETDVE---------------IETTSETKG-----TKQ 254
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E+EG EE+ +EK+ K + K E +E+++++
Sbjct: 255 EQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDEEL 294
Score = 32.7 bits (75), Expect = 0.51
Identities = 13/61 (21%), Positives = 29/61 (47%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
EEE + E E E K K+E++ ++ EE+E+ ++ + + + ++ +E
Sbjct: 235 REEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDEEL 294
Query: 511 L 511
Sbjct: 295 F 295
Score = 30.4 bits (69), Expect = 2.6
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEE 490
E+++E K ++K KK++KK+K + EE+E
Sbjct: 648 EKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 30.0 bits (68), Expect = 3.9
Identities = 11/31 (35%), Positives = 23/31 (74%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKK 483
E+++E + E++ KKE+KK+K K+++K+
Sbjct: 648 EKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 29.6 bits (67), Expect = 5.1
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEE 487
E+ +E + +++ KK++KK+K K+EE+E
Sbjct: 648 EKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 29.2 bits (66), Expect = 7.3
Identities = 11/31 (35%), Positives = 24/31 (77%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKE 484
E+++E + + +EK K+++KK+K K+++KE
Sbjct: 648 EKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 28.8 bits (65), Expect = 7.9
Identities = 13/31 (41%), Positives = 24/31 (77%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKK 482
E+++E + + EEK KK+EKK+K K+++K+
Sbjct: 648 EKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible
proteins-interacting protein 1. Members of this family
of proteins act as negative regulators of G1 to S cell
cycle phase progression by inhibiting cyclin-dependent
kinases. Inhibitory effects are additive with GADD45
proteins but occur also in the absence of GADD45
proteins. Furthermore, they act as a repressor of the
orphan nuclear receptor NR4A1 by inhibiting AB
domain-mediated transcriptional activity.
Length = 217
Score = 32.9 bits (75), Expect = 0.28
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK-KKMMMMMKKIRRRPKE 509
EE EEEE E + +E ++++K+K+ +++ E E + KM M+ R + ++
Sbjct: 88 EELEEEEREWYPSLNQMLEENREQQKEKEARRQAREAEIAKNMAKMPQMIADWRAQKRK 146
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 32.6 bits (75), Expect = 0.28
Identities = 10/31 (32%), Positives = 24/31 (77%)
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
++K KK +K+K+K++K+ +K ++ ++E K+
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADDGDDELKQ 44
Score = 32.2 bits (74), Expect = 0.34
Identities = 10/31 (32%), Positives = 24/31 (77%)
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+K+ KK KK+K+K++K+ ++ ++ ++E K+
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADDGDDELKQ 44
Score = 29.1 bits (66), Expect = 3.6
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+KEK+K++K+ +K +E ++ EE K
Sbjct: 21 KKEKRKQRKQARKGADDGDDELKQAAEEAKA 51
Score = 28.0 bits (63), Expect = 8.8
Identities = 10/54 (18%), Positives = 31/54 (57%)
Query: 443 RRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
+R+ G ++ ++E + EE K +K E+ ++ ++++ + E++ + K++
Sbjct: 27 QRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQKAIVAQIKQL 80
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 33.4 bits (77), Expect = 0.29
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEE--------EEEEEKKKMMMMMKK 502
+EE EE EK++E ++ K+ KK EE E E E+ + + K
Sbjct: 221 KEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKFLK 271
>gnl|CDD|223542 COG0466, Lon, ATP-dependent Lon protease, bacterial type
[Posttranslational modification, protein turnover,
chaperones].
Length = 782
Score = 33.3 bits (77), Expect = 0.32
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMM 500
+E E +++++E E+ +EK +K K K+ KE+ E+E ++ + M M
Sbjct: 240 KELGEDDDDKDEVEELREKIEKLKLPKEAKEKAEKELKKLETMSPMS 286
Score = 29.8 bits (68), Expect = 4.0
Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMM 500
+E E++ +++E E+ ++K +K K K+ K+K E+E +K + M M
Sbjct: 240 KELGEDDDDKDEVEELREKIEKLKLPKEAKEK---AEKELKKLETMSPM 285
>gnl|CDD|224337 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 33.1 bits (76), Expect = 0.33
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRR---RPKEFL 511
E + EE + KK E+ ++K +E ++ EE + M IR P EF+
Sbjct: 83 PAEKKREERKAAKKIERSTPSLIERKTQEVKDSGEEIAEMMRDEKVPIRELEEIPPEFV 141
Score = 30.4 bits (69), Expect = 2.7
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
+ ++ ++ EE K KK ++ ++K +E ++ EE +MM K R +E
Sbjct: 78 QLLKDPAEKKREERKAAKKIERSTPSLIERKTQEVKDSGEEIAEMMRDEKVPIRELEEI 136
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 32.4 bits (74), Expect = 0.35
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 448 GGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
G E + E + E +EEKE K KK K K KK ++ E EKK
Sbjct: 92 GAFTEAQAEAKFEAWKEEKEGKVNAKKDKLSKAKKAAKKAALEAEKK 138
Score = 29.4 bits (66), Expect = 2.8
Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 455 EEEEGEEEEEEK------EKKKEKKKKKKKKKKKKEEEEEEEEEK 493
+++ + ++ K EKK + + + +KK E E+
Sbjct: 118 KDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEE 162
Score = 28.6 bits (64), Expect = 6.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E+E + ++++ K KK KK + +KK E E EKK
Sbjct: 108 EEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKA 152
Score = 28.2 bits (63), Expect = 8.5
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 459 GEEEEEEK-EKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
E + E K E KE+K+ K KK K + ++ +K +
Sbjct: 95 TEAQAEAKFEAWKEEKEGKVNAKKDKLSKAKKAAKKAAL 133
>gnl|CDD|150531 pfam09871, DUF2098, Uncharacterized protein conserved in archaea
(DUF2098). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 91
Score = 30.7 bits (70), Expect = 0.36
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 474 KKKKKKKKKKEEEEEEEEEKKKMMMMMKKIR 504
K K+KK++++E++EE E KK + +
Sbjct: 51 KVKEKKEEREEDKEELIERIKKEEETFEDVD 81
Score = 27.3 bits (61), Expect = 5.8
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 470 KEKKKKKKKKKKKKEEEEEEEEEKKKM 496
K K+KK+++++ K+E E ++E++
Sbjct: 51 KVKEKKEEREEDKEELIERIKKEEETF 77
Score = 27.3 bits (61), Expect = 6.3
Identities = 10/31 (32%), Positives = 23/31 (74%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
++ KEKK+E+++ K++ ++ ++EEE E+
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDV 80
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 33.2 bits (76), Expect = 0.38
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 13/82 (15%)
Query: 402 LARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEE 461
++ +R R + RE+ ++ A +RR G E +
Sbjct: 725 ISSERAPRNVGKTAREKAKKGDAGKK-------------GGKRRQVGKKVNFEPDSAFRG 771
Query: 462 EEEEKEKKKEKKKKKKKKKKKK 483
E++ K K +K +K KK K
Sbjct: 772 EKKAKPKAAKKDARKAKKPSAK 793
>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC,
C-terminal domain. This model describes the C-terminal
domain, or longer subunit, of the Firmicutes type VII
secretion protein EssC. This protein (homologous to EccC
in Actinobacteria) and the WXG100 target proteins are
the only homologous parts of type VII secretion between
Firmicutes and Actinobacteria [Protein fate, Protein and
peptide secretion and trafficking].
Length = 1296
Score = 33.4 bits (77), Expect = 0.39
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 11/60 (18%)
Query: 466 KEKKKEKKKKKKK--------KKKKKEEEEEEEEEKKKMMMM---MKKIRRRPKEFLHRI 514
+EKKK KK +K+ KK+KE + E+++ + +++++ + RI
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRHVLHYHNPSVEELKEMVENVNSRI 143
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 33.0 bits (76), Expect = 0.39
Identities = 14/93 (15%), Positives = 33/93 (35%), Gaps = 13/93 (13%)
Query: 404 RKREERLRKQAEREREEREKA-QASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
RE R +K AE + + A A++ R+ + + + G
Sbjct: 467 AAREARHKKAAEARAAKDKDAVAAAL--------ARV----KAKKAAATQPIVIKAGARP 514
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ + +K + + ++ E++ + KK
Sbjct: 515 DNSAVIAAREARKAQARARQAEKQAAAAADPKK 547
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 32.2 bits (74), Expect = 0.40
Identities = 8/33 (24%), Positives = 21/33 (63%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EE K K + ++ +++ KK++ E+E+ +++
Sbjct: 104 EEAKAKVQAQRAEQQAKKREAAGEKEKAPRRER 136
Score = 31.4 bits (72), Expect = 0.78
Identities = 10/42 (23%), Positives = 23/42 (54%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E++ + E EKEK +++K K K +K+ + ++ + +
Sbjct: 116 EQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQ 157
Score = 31.4 bits (72), Expect = 0.82
Identities = 9/42 (21%), Positives = 24/42 (57%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
E++ ++ E E+++ + ++K K K +KK + ++ E +
Sbjct: 116 EQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQ 157
Score = 30.3 bits (69), Expect = 2.0
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
++ E GE+E+ + ++K K K +KK+K + ++ E +
Sbjct: 120 KKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPV 161
Score = 29.5 bits (67), Expect = 3.1
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E++ ++ E+EK ++E+K K K +KK++ ++ E +
Sbjct: 116 EQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHT 159
Score = 29.5 bits (67), Expect = 3.6
Identities = 9/43 (20%), Positives = 22/43 (51%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
++ E E+E+ ++++ K K +KK+K ++ E +
Sbjct: 120 KKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVS 162
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 32.3 bits (74), Expect = 0.41
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMM---MKKIRRR 506
E EE E+ EEEE E+E+ +E+ + ++++++ E E + EE K K + + +R+R
Sbjct: 15 ETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRAQAEFENLRKR 72
Score = 29.6 bits (67), Expect = 2.4
Identities = 13/44 (29%), Positives = 32/44 (72%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+E++ EE + EE E+ +K E+++ ++++ +++ E EEE++E +
Sbjct: 4 KEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAE 47
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 32.6 bits (75), Expect = 0.42
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 452 EEEEEEEGEEEEEE----------KEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMK 501
EEE EE EEE +E ++K EKK KK KK K EE EE + +
Sbjct: 67 EEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEEPEP 126
Query: 502 KIRRR 506
+R R
Sbjct: 127 PLRPR 131
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain. This
family represents the C-terminus (approximately 300
residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 32.6 bits (74), Expect = 0.44
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+E E E +E+ E+E K++ +++K++ K EEE ++E E KK
Sbjct: 51 QEREREAAKEKALEEEAKRKAEERKRETLKIVEEEVKKELELKK 94
Score = 30.3 bits (68), Expect = 2.4
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 447 GGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
G EEEEE E EEE + ++ + + K +KK + +E E E K + ++ +R+
Sbjct: 11 DESGEEEEEESEEEEETDSEDDMEPRLKPVFTRKKDRITIQEREREAAKEKALEEEAKRK 70
Query: 507 PKE 509
+E
Sbjct: 71 AEE 73
Score = 30.3 bits (68), Expect = 2.4
Identities = 27/101 (26%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 406 REERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEE 465
+E+ L ++A+R+ EER++ + + + +R ++ + + E EEEE
Sbjct: 59 KEKALEEEAKRKAEERKRETLKIVEEEVKKELELK--KRNTLLEANIDDVDTDDENEEEE 116
Query: 466 KEKKKEKK-KKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRR 505
E K ++ K+ K+ ++++EE E E+ E +KM M ++ RR
Sbjct: 117 YEAWKLRELKRIKRDREEREEMEREKAEIEKMRNMTEEERR 157
Score = 29.9 bits (67), Expect = 2.8
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
E EEEEE + E++ + + K +KK + +E E E +EK +K R +E
Sbjct: 20 ESEEEEETDSEDDMEPRLKPVFTRKKDRITIQEREREAAKEKALEEEAKRKAEERKRE 77
>gnl|CDD|107155 PHA02241, PHA02241, hypothetical protein.
Length = 182
Score = 32.0 bits (72), Expect = 0.47
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 172 LCYQLELEHLEREKREREIRE-LRERELNDRIKEDLIKNASRPFDPHWLELQRSS 225
L Y LE E + + E KE LI+ ++EL+R +
Sbjct: 32 LGYTDSLEDAEYIRDNYGTSNPIFINEYPYITKEKLIEEQRYFRYNSYIELKRVN 86
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 32.3 bits (74), Expect = 0.47
Identities = 18/96 (18%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 401 KLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGE 460
+ R + E + E RE++++ + M E + + E E E+
Sbjct: 207 EAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEK------MEAEREKLL 260
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
E+E + K +++++ K+ K E E ++E + +
Sbjct: 261 AEQERMLEHKLQEQEELLKEGFKTEAESLQKEIQDL 296
Score = 31.9 bits (73), Expect = 0.73
Identities = 13/57 (22%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 451 GEEEEEEEGEEEEE-EKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
E+ E E + E E E++ ++K+K++++ + +E +E K+++ M+ R +
Sbjct: 202 KEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREK 258
Score = 30.3 bits (69), Expect = 2.4
Identities = 9/41 (21%), Positives = 23/41 (56%)
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIR 504
KEK E ++ K + + ++E E++++++ MM ++
Sbjct: 200 TAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERS 240
Score = 29.6 bits (67), Expect = 3.5
Identities = 8/35 (22%), Positives = 21/35 (60%)
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
+EK + E+ K + + +++ E+++EE++ M
Sbjct: 200 TAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMM 234
Score = 29.2 bits (66), Expect = 5.6
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 25/101 (24%)
Query: 412 KQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKE 471
K E ER + E A+A E E+ +EEE+ E ++
Sbjct: 204 KAIEAERAKAEAAEAEQ------------------------ELLREKQKEEEQMMEAQER 239
Query: 472 KKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLH 512
++ K+ +K E E E+ ++ M+ K + +E L
Sbjct: 240 SYQEHVKQLIEKMEAEREKLLAEQERMLEHK-LQEQEELLK 279
Score = 29.2 bits (66), Expect = 5.8
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 467 EKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
K+K + ++ K + + E+E E++K+ MM+ R +E
Sbjct: 201 AKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQE 243
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 32.7 bits (74), Expect = 0.47
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
Query: 406 REERLRKQAEREREEREKAQASMCNLLSRNPE----RIDTPRRRGGGGGGEEEEEEEGEE 461
R+ ++ E+E E E+ + +L N E ++ GG E + E G+E
Sbjct: 142 RDAEECQKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLKHTENTFSRGGAEGAQVEAGKE 201
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEE---EEEEEEEKKKMMMMMKKIR-----RRPKE 509
E+ K+K++E + ++ KKK+EE EEEE+++K +K R RR KE
Sbjct: 202 FEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKE 257
Score = 31.9 bits (72), Expect = 0.84
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 405 KREERLRKQAERERE-EREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEE 463
+R+ER + ER++E + S+ R E EE EE E EE
Sbjct: 69 RRDERFSEALERQKEFKPTSTDQSLSEPSRRMQEDSGAENETVEEEEKEESREEREEVEE 128
Query: 464 EE---KEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E K ++K + ++ +K+++E E EEEEK K
Sbjct: 129 TEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPK 163
Score = 31.5 bits (71), Expect = 1.0
Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 404 RKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEE 463
++ + Q+ E R + + N E+ ++ R EE EE EG +
Sbjct: 82 KEFKPTSTDQSLSEPSRRMQEDSGAENETVEEEEKEESREER------EEVEETEGVTKS 135
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E+K ++ ++ +K++K+ + EEEE+ +
Sbjct: 136 EQKNDWRDAEECQKEEKEPEPEEEEKPKRGSL 167
Score = 28.5 bits (63), Expect = 9.5
Identities = 22/95 (23%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 403 ARKREERLRKQAEREREE-REKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEE 461
+R E + +A +E E+ ++K Q + L +R + + EEEE+ +
Sbjct: 187 SRGGAEGAQVEAGKEFEKLKQKQQEAALELEELKKKREERRKVL--------EEEEQRRK 238
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
+EE K +E+++K++ K++ + E E+++K+
Sbjct: 239 QEEADRKSREEEEKRRLKEEIERRRAEAAEKRQKV 273
>gnl|CDD|221012 pfam11169, DUF2956, Protein of unknown function (DUF2956). This
family of proteins with unknown function appears to be
restricted to Gammaproteobacteria.
Length = 103
Score = 30.7 bits (70), Expect = 0.48
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
+K K +E K +K++ K K+ + ++E
Sbjct: 43 QKAKAREADKARKQQLKAKQRQAANDDE 70
Score = 28.0 bits (63), Expect = 3.7
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 463 EEEKEKKKEK-----KKKKKKKKKKKEEEEEEEEE 492
E K+++K K K +K++ K K+ + ++EE
Sbjct: 37 AEYKKQQKAKAREADKARKQQLKAKQRQAANDDEE 71
>gnl|CDD|111875 pfam03032, Brevenin, Brevenin/esculentin/gaegurin/rugosin family.
This family contains a number of defence peptides
secreted from the skin of amphibians, including the
opiate-like dermorphins and deltorphins, and the
antimicrobial dermoseptins and temporins. The alignment
for this family includes the signal peptide.
Length = 46
Score = 29.2 bits (66), Expect = 0.48
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKK 477
EEE+ E EEE E++E+ +E+ + K+
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVKR 46
Score = 28.5 bits (64), Expect = 0.95
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKK 474
E+ E+EE E+EEE E++ E K+
Sbjct: 24 EKREDEEENEDEEEGEEQSEVKR 46
Score = 26.5 bits (59), Expect = 4.2
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKK 476
EEE+ E+ EE E+E+E +++ + K+
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVKR 46
Score = 26.2 bits (58), Expect = 5.7
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKK 478
EEE+ +EEE E E++ E++ + K+
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVKR 46
Score = 25.4 bits (56), Expect = 9.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKK 480
EEE E+EEE E ++E +++ + K+
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVKR 46
>gnl|CDD|220376 pfam09745, DUF2040, Coiled-coil domain-containing protein 55
(DUF2040). This entry is a conserved domain of
approximately 130 residues of proteins conserved from
fungi to humans. The proteins do contain a coiled-coil
domain, but the function is unknown.
Length = 128
Score = 31.2 bits (71), Expect = 0.48
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 471 EKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLHRI 514
K K++KK+ K E +E + K + +++ RR +E
Sbjct: 26 SIKAAKEEKKQAKLSERKENRKPKYIGSLLEAAERRKREREIAE 69
>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in
ribosomal biogenesis [Translation, ribosomal structure
and biogenesis].
Length = 821
Score = 32.7 bits (74), Expect = 0.51
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKE 484
E EE+E EEE+E+E+ KE K+ KKK++K
Sbjct: 769 ESSEEDESSEEEKEEEENKEVSAKRAKKKQRKN 801
Score = 30.0 bits (67), Expect = 4.2
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKE 484
E+E EE +EEEE KE ++ KKK++K K
Sbjct: 773 EDESSEEEKEEEENKEVSAKRAKKKQRKNMLKS 805
>gnl|CDD|130214 TIGR01144, ATP_synt_b, ATP synthase, F0 subunit b. This model
describes the F1/F0 ATP synthase b subunit in bacteria
only. Scoring just below the trusted cutoff are the
N-terminal domains of Mycobacterial b/delta fusion
proteins and a subunit from an archaeon, Methanosarcina
barkeri, in which the ATP synthase homolog differs in
architecture and is not experimentally confirmed. This
model helps resolve b from the related b' subunit.
Within the family is an example from a
sodium-translocating rather than proton-translocating
ATP synthase [Energy metabolism, ATP-proton motive force
interconversion].
Length = 147
Score = 31.2 bits (71), Expect = 0.52
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 398 PDSKLARKREERLRK---QAEREREEREKAQASMCNLLSRNPER----IDTPRRRGGGGG 450
P +K R++++ AER ++E AQ +L + I+ +RG
Sbjct: 19 PLAKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRG---- 74
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
E EE E EE+EK K + + + + +K++ EE ++
Sbjct: 75 -SEILEEAKAEAREEREKIKAQARAEIEAEKEQAREELRKQ 114
>gnl|CDD|185582 PTZ00373, PTZ00373, 60S Acidic ribosomal protein P2; Provisional.
Length = 112
Score = 30.6 bits (69), Expect = 0.53
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 471 EKKKKKKKKKKKKEEEEEEEE 491
K + KK++KK+EEEEEE++
Sbjct: 85 GAKAEAKKEEKKEEEEEEEDD 105
Score = 30.6 bits (69), Expect = 0.55
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 474 KKKKKKKKKKEEEEEEEEE 492
K + KK++KKEEEEEEE++
Sbjct: 87 KAEAKKEEKKEEEEEEEDD 105
Score = 28.3 bits (63), Expect = 3.2
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 477 KKKKKKKEEEEEEEEEKKKM 496
K + KK+E++EEEEEE+ +
Sbjct: 87 KAEAKKEEKKEEEEEEEDDL 106
Score = 27.6 bits (61), Expect = 6.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 448 GGGGEEEEEEEGEEEEEEKE 467
G E ++EE+ EEEEEE++
Sbjct: 85 GAKAEAKKEEKKEEEEEEED 104
Score = 27.6 bits (61), Expect = 6.8
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 478 KKKKKKEEEEEEEEEKKKMM 497
K + KKEE++EEEEE++ +
Sbjct: 87 KAEAKKEEKKEEEEEEEDDL 106
>gnl|CDD|220924 pfam10986, DUF2796, Protein of unknown function (DUF2796). This
bacterial family of proteins has no known function.
Length = 161
Score = 31.5 bits (72), Expect = 0.54
Identities = 11/50 (22%), Positives = 15/50 (30%)
Query: 67 ALSQAGLSHVASATLSQTTSSSVSTNHGPQSHSHHHQHSHHHHHQTATAS 116
AL A + +L + +H H HH H H A
Sbjct: 62 ALPPAAGCTLTEVSLESSLFGDHDHDHHDHDHHDHHDDHEHAGHSDFHAE 111
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 32.7 bits (75), Expect = 0.56
Identities = 10/41 (24%), Positives = 26/41 (63%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
+++E+++ ++ ++E E+KKE K+ +K +E++ E
Sbjct: 155 DDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSE 195
Score = 31.1 bits (71), Expect = 1.4
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 10/96 (10%)
Query: 400 SKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEG 459
KLA K + + E +E E + + + G ++ ++
Sbjct: 21 KKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLI----------FLSGMVKDTDDAT 70
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E + +K+ K K K KK+ ++E + KK
Sbjct: 71 ESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKA 106
Score = 30.3 bits (69), Expect = 3.0
Identities = 13/107 (12%), Positives = 43/107 (40%)
Query: 389 RTDLTFKPVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGG 448
K + A+ ++ K ++ EK A + + ID +
Sbjct: 74 IPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDD 133
Query: 449 GGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+++++ + ++ +++ + + + + ++EE++E +E +K
Sbjct: 134 DDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEK 180
Score = 29.6 bits (67), Expect = 4.7
Identities = 10/44 (22%), Positives = 27/44 (61%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E++++++ ++E+EEK++ KE +K +E++ E + +
Sbjct: 158 EDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQAR 201
Score = 29.2 bits (66), Expect = 6.9
Identities = 13/105 (12%), Positives = 35/105 (33%), Gaps = 2/105 (1%)
Query: 393 TFKPVPDSKLARKREERLRKQAERER--EEREKAQASMCNLLSRNPERIDTPRRRGGGGG 450
+ + + +K ++ K + +E K +++
Sbjct: 7 KAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDT 66
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ E + +++ + K K KKK K + + ++ E+K
Sbjct: 67 DDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNA 111
>gnl|CDD|233294 TIGR01159, DRP1, density-regulated protein DRP1. This protein
family shows weak but suggestive similarity to
translation initiation factor SUI1 and its prokaryotic
homologs.
Length = 173
Score = 31.4 bits (71), Expect = 0.57
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 440 DTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEE--EEEEEEKKKMM 497
D+P E +EE+GE++ +K +E ++ KKKKK ++ + E K+K +
Sbjct: 45 DSPTAEAEAVTIGEAQEEKGEKDLLGIQKAQEAREGGKKKKKLPQKVTIKREPRTKRKFV 104
Query: 498 MMMK 501
++K
Sbjct: 105 TVIK 108
>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 472
Score = 32.4 bits (74), Expect = 0.59
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMK 501
+E + E+ + ++KEKKK++ K K++K+E+ E E+ K++M +K
Sbjct: 338 NVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEELK 387
Score = 30.1 bits (68), Expect = 3.5
Identities = 12/45 (26%), Positives = 28/45 (62%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
+ + +E+++E+ K KE+K++ + +K+ +E EE +EK +
Sbjct: 348 NDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEELKEKGDL 392
>gnl|CDD|219978 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase. Grn1 (yeast) and
GNL3L (human) are putative GTPases which are required
for growth and play a role in processing of nucleolar
pre-rRNA. This family contains a potential nuclear
localisation signal.
Length = 80
Score = 29.9 bits (68), Expect = 0.59
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKE 484
EE EE+ ++EEEKE++KE +K ++ + +K+
Sbjct: 49 EEIEEKKRKQEEEKERRKEARKAERAEARKRG 80
Score = 28.8 bits (65), Expect = 1.5
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
EE EE EE+K K++E+K+++K+ +K + E +
Sbjct: 45 EEILEEIEEKKRKQEEEKERRKEARKAERAEARKRG 80
>gnl|CDD|218581 pfam05416, Peptidase_C37, Southampton virus-type processing
peptidase. Corresponds to Merops family C37.
Norwalk-like viruses (NLVs), including the Southampton
virus, cause acute non-bacterial gastroenteritis in
humans. The NLV genome encodes three open reading frames
(ORFs). ORF1 encodes a polyprotein, which is processed
by the viral protease into six proteins.
Length = 535
Score = 32.5 bits (74), Expect = 0.61
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEE--------EEEEEEEKKKM 496
G E EE++ E ++ E KK K KK + K+ +EE +E KK+
Sbjct: 210 DGCESEEDDEGWYIEPQDATPEGKKGKNKKGRGKKHNAFSRRGLSDEEYDEYKKI 264
Score = 31.7 bits (72), Expect = 1.1
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 449 GGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKE--------EEEEEEEEKK 494
G E EE++EG E + + KK K KK + KK +EE +E KK
Sbjct: 210 DGCESEEDDEGWYIEPQDATPEGKKGKNKKGRGKKHNAFSRRGLSDEEYDEYKK 263
>gnl|CDD|204614 pfam11221, Med21, Subunit 21 of Mediator complex. Med21 has been
known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in
Drosophila. The heterodimer of the two subunits Med7 and
Med21 appears to act as a hinge between the middle and
the tail regions of Mediator.
Length = 132
Score = 31.1 bits (71), Expect = 0.61
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 12/76 (15%)
Query: 419 EEREKAQASMCNLLSRNPERIDT-----PRRRGGGGGGEEEEEE---EGEEEEEEKEKKK 470
EE E+ Q + + ++I+ P G EEE+ E EEE E E ++
Sbjct: 53 EEFEEGQRELARDIILKAQQIEYLIDSLP----GIESSEEEQLRRIKELEEELREVEAER 108
Query: 471 EKKKKKKKKKKKKEEE 486
E+ K+K+K KK E
Sbjct: 109 EEAVKEKEKLLKKVEA 124
>gnl|CDD|218328 pfam04921, XAP5, XAP5, circadian clock regulator. This protein is
found in a wide range of eukaryotes. It is a nuclear
protein and is suggested to be DNA binding. In plants,
this family is essential for correct circadian clock
functioning by acting as a light-quality regulator
coordinating the activities of blue and red light
signalling pathways during plant growth - inhibiting
growth in red light but promoting growth in blue light.
Length = 233
Score = 31.9 bits (73), Expect = 0.61
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 22/76 (28%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEK-------KKKKKKKKKK---------------KEEEEE 488
G+++EEE+ +E E+EK+ KE KKK K ++E E
Sbjct: 14 GDDDEEEDEDEGEDEKKVPKESSEPDEANVNPNKKKIGKNPSVDTSFLPDKAREEKEAEL 73
Query: 489 EEEEKKKMMMMMKKIR 504
EE +++ + + ++
Sbjct: 74 REELREEFLKKQEAVK 89
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 31.5 bits (72), Expect = 0.64
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
+ +E E ++++ ++EKKKKKKK KKK+ ++ K +
Sbjct: 162 DIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKAI 206
Score = 28.4 bits (64), Expect = 6.7
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKI 503
+E + +E E ++K+ +++KKKKKKK ++++ KK + MK I
Sbjct: 159 KELDIKEAEAARDKKKSNNAEEEKKKKKKKSA----KKKKLKKVAAVGMKAI 206
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 32.4 bits (74), Expect = 0.65
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 405 KREERLRKQAERE-REEREKAQASMCNLLS--RNPERIDTPRRRGGGGGGEEE--EEEEG 459
K ER+ ++A++E E+ E A LL RN +R + R R EE ++EE
Sbjct: 33 KEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQ 92
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
+ EK E + ++++K E E EE EK+
Sbjct: 93 LDARAEKLDNLENQLEEREKALSARELELEELEKQ 127
>gnl|CDD|216337 pfam01159, Ribosomal_L6e, Ribosomal protein L6e.
Length = 108
Score = 30.3 bits (69), Expect = 0.66
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 472 KKKKKKKKKKKKEEEEEEEEEKKK 495
K++KKKKKKK + E E++EKK+
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKE 61
Score = 27.2 bits (61), Expect = 7.3
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 4/31 (12%)
Query: 469 KKEKKKKKKKKK----KKKEEEEEEEEEKKK 495
K+EKKKKKKK + +K+E++E E++K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKA 68
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 31.4 bits (72), Expect = 0.68
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM--MMMMKKIRRRPKEF 510
E+E ++ EEE+EE EK+ + + K + +K+EEEE + EEK+ + +KK ++ K
Sbjct: 126 EQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADEIAFLKKQNQQLKSQ 185
Query: 511 LHRI 514
L +I
Sbjct: 186 LEQI 189
Score = 29.1 bits (66), Expect = 3.6
Identities = 13/39 (33%), Positives = 26/39 (66%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
+ E+G+ E E++ KK E++K++ +K+ + E + E EK
Sbjct: 117 QAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEK 155
>gnl|CDD|236410 PRK09202, nusA, transcription elongation factor NusA; Validated.
Length = 470
Score = 32.1 bits (74), Expect = 0.68
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
EE E EG +EE +E ++ K+ + + +EE+ ++ + +
Sbjct: 389 EELLEIEGFDEETVEELRERAKEALETEALAQEEKLADDLLSLEGL 434
>gnl|CDD|227268 COG4932, COG4932, Predicted outer membrane protein [Cell envelope
biogenesis, outer membrane].
Length = 1531
Score = 32.5 bits (74), Expect = 0.68
Identities = 22/98 (22%), Positives = 31/98 (31%), Gaps = 11/98 (11%)
Query: 417 EREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKK 476
E + E + + N L E D+ G EE G EE K K K
Sbjct: 1417 EFNQEEALKVTKTNKLF--IEFEDSI------GNQLNAEEHTGNVGEEYVFKAKNPGHYK 1468
Query: 477 KKKKKKKEEEEEEE---EEKKKMMMMMKKIRRRPKEFL 511
+ + E E EK+ + +EFL
Sbjct: 1469 EGDQPITFEPTEPPKPDPEKRLDSNNKIDLPSTGEEFL 1506
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 32.2 bits (73), Expect = 0.69
Identities = 7/41 (17%), Positives = 22/41 (53%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
+++ +E+G ++E K + + + ++ K+ EE+ +
Sbjct: 798 KQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAP 838
Score = 29.9 bits (67), Expect = 4.1
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 466 KEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
K+K KEK K+ K + E E E
Sbjct: 798 KQKPKEKGPNDKEIKIESPSVETEGERCTIKQ 829
Score = 29.5 bits (66), Expect = 5.5
Identities = 11/60 (18%), Positives = 29/60 (48%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLHRI 514
+++ E+ +KE K E + + ++ ++ EE+ ++ +KK + + + RI
Sbjct: 798 KQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPYKVDNMTRI 857
>gnl|CDD|206228 pfam14058, PcfK, PcfK-like protein. The PcfK-like protein family
includes the Enterococcus faecalis PcfK protein, which
is functionally uncharacterized. This family of proteins
is found in bacteria and viruses. Proteins in this
family are typically between 137 and 257 amino acids in
length. There are two completely conserved residues (D
and L) that may be functionally important.
Length = 136
Score = 30.8 bits (70), Expect = 0.69
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEE 489
EE+ E E + ++++ K +K+ KK KK E + +
Sbjct: 92 EEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPVQGQ 130
Score = 30.4 bits (69), Expect = 0.82
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
EEE+ E +E + +++E +K +K+ KK K+ E + +
Sbjct: 92 EEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPVQGQ 130
Score = 30.0 bits (68), Expect = 1.5
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
EEE+ +E K ++E+ +K +K+ KK ++ E + +
Sbjct: 92 EEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPVQGQ 130
Score = 29.7 bits (67), Expect = 2.0
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEE 490
EEE+ E +E + ++++ +K +K+ KK KK E + +
Sbjct: 92 EEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPVQGQ 130
Score = 29.3 bits (66), Expect = 2.5
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
E EEE+ E +E + ++++ +K +K+ KK ++ E +
Sbjct: 88 VELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPVQ 128
Score = 28.9 bits (65), Expect = 3.0
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEE 485
E +E ++EE K +++ KK KK + + +
Sbjct: 95 KAEARKEALKAYQQEELRKIQKRSKKSKKAEPVQGQ 130
Score = 28.1 bits (63), Expect = 5.6
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
E EEE E +E K ++++ +K +K+ K+ ++ E +
Sbjct: 88 VELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPVQ 128
>gnl|CDD|225435 COG2880, COG2880, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 67
Score = 29.4 bits (66), Expect = 0.69
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
+E E+ + KEK E K K+ K+ EE EE E
Sbjct: 25 KEGEKVKIVIRVKEKIYEILKGSLKEIKEILEEILEEIE 63
Score = 27.5 bits (61), Expect = 3.2
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
+EGE+ + K++ + K K+ +E EE E+
Sbjct: 25 KEGEKVKIVIRVKEKIYEILKGSLKEIKEILEEILEE 61
Score = 26.3 bits (58), Expect = 7.3
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEE 489
GE+ + +E+ + K K+ K+ ++ EE E+E
Sbjct: 27 GEKVKIVIRVKEKIYEILKGSLKEIKEILEEILEEIEDE 65
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 32.0 bits (72), Expect = 0.70
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 431 LLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEE 490
+S + EE + + +E EEKE+ E ++ ++ + +E E E
Sbjct: 288 EVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNELE 347
Query: 491 ---EEKKKMM 497
EEK++ M
Sbjct: 348 KGIEEKRRQM 357
>gnl|CDD|116494 pfam07882, Fucose_iso_N2, L-fucose isomerase, second N-terminal
domain. The members of this family are similar to
L-fucose isomerase expressed by E. coli (EC:5.3.1.3).
This enzyme corresponds to glucose-6-phosphate isomerase
in glycolysis, and converts an aldo-hexose to a ketose
to prepare it for aldol cleavage. The enzyme is a
hexamer, with each subunit being wedge-shaped and
composed of three domains. Both domains 1 and 2 contain
central parallel beta- sheets with surrounding alpha
helices. The active centre is shared between pairs of
subunits related along the molecular three-fold axis,
with domains 2 and 3 from one subunit providing most of
the substrate-contacting residues.
Length = 181
Score = 31.2 bits (71), Expect = 0.71
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 9/56 (16%)
Query: 457 EEGEEEEEEKEK---------KKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKI 503
EE + EE EK K+ K ++ ++++E+++E E KM ++++ +
Sbjct: 44 EEEIYDPEEFEKALAWLEENCKEGDDKNPEELERQREQKDEVWEFVIKMYIIIRDL 99
>gnl|CDD|215525 PLN02972, PLN02972, Histidyl-tRNA synthetase.
Length = 763
Score = 32.2 bits (73), Expect = 0.74
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKK 479
GGE E+ + E E E + K+ KK KKKK
Sbjct: 229 GGELIEKPQAEAENEAGKSDKKDKKSKKKK 258
Score = 31.0 bits (70), Expect = 1.9
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKK 482
E E E + E E E K KK KK KKKK
Sbjct: 228 EGGELIEKPQAEAENEAGKSDKKDKKSKKKK 258
>gnl|CDD|221473 pfam12230, PRP21_like_P, Pre-mRNA splicing factor PRP21 like
protein. This domain family is found in eukaryotes, and
is typically between 212 and 238 amino acids in length.
The family is found in association with pfam01805. There
are two completely conserved residues (W and H) that may
be functionally important. PRP21 is required for
assembly of the prespliceosome and it interacts with U2
snRNP and/or pre-mRNA in the prespliceosome. This family
also contains proteins similar to PRP21, such as the
mammalian SF3a. SF3a also interacts with U2 snRNP from
the prespliceosome, converting it to its active form.
Length = 230
Score = 31.6 bits (72), Expect = 0.74
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 439 IDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEE 488
++ P EE EEEE + +EE+KE+ +K K+ K E
Sbjct: 96 LEEPDAAAAPEEEEEMEEEEEDIDEEKKEESAKKSTPPIKEMKIPAAGES 145
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 31.9 bits (73), Expect = 0.74
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKK---KKKKKKEEEEEEEEE 492
EEEEEE E EEEE+E+ +E+KK+K K K E +E++ E+
Sbjct: 22 EEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKDIED 65
Score = 30.7 bits (70), Expect = 1.7
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
EE E E EEEEE++E+KKEK K K + +E++ E+
Sbjct: 24 EEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKDIED 65
Score = 29.6 bits (67), Expect = 4.7
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
EEEE E EEEEEE++++++K+K K K E +E++ E
Sbjct: 24 EEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKDIED 65
Score = 29.2 bits (66), Expect = 5.6
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
E EEEE EE+EEEK++K K K + K+++ E+ EE
Sbjct: 29 PEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKDIEDLLEE 69
Score = 29.2 bits (66), Expect = 5.8
Identities = 11/33 (33%), Positives = 26/33 (78%)
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
EEK +++E+++ + +++++EE+EEE++EK
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGF 49
Score = 28.8 bits (65), Expect = 7.0
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKK 482
EE+ EEE EEE E E+++E++ +++KK+K
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKEKP 47
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This is
a family of uncharacterized proteins.
Length = 449
Score = 31.9 bits (72), Expect = 0.76
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 449 GGGEEEEEEEGEEEEEEKEK-------KKEKKKKKKKKKKKKEEEEEEEEE 492
E E+++ + KEK KKE +K K+ ++E EEE+++
Sbjct: 6 ASSELEDDDWVRGSLDYKEKLTLNDTMKKENAIRKLGKEAEEEAMEEEDDD 56
>gnl|CDD|227447 COG5117, NOC3, Protein involved in the nuclear export of
pre-ribosomes [Translation, ribosomal structure and
biogenesis / Intracellular trafficking and secretion].
Length = 657
Score = 32.3 bits (73), Expect = 0.77
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 10/128 (7%)
Query: 391 DLTFKPVPDSKLARKREERLRKQAEREREEREKAQAS-MCNLLSRNPERIDTPRRRGGGG 449
DL K + D K + EE E++ E R + +S +R P +
Sbjct: 37 DLGKKVIYDLKKSSSDEE------EQDYELRPRVSSSWNNESYNRLPIKTKDNVVADVNN 90
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE---EKKKMMMMMKKIRRR 506
G E E E E E K++K+K +++K E +++ EK+++ + KI
Sbjct: 91 GEEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKERIASICTKIIEE 150
Query: 507 PKEFLHRI 514
P+E L +
Sbjct: 151 PEENLGMM 158
>gnl|CDD|193409 pfam12936, Kri1_C, KRI1-like family C-terminal. The yeast member
of this family (Kri1p) is found to be required for 40S
ribosome biogenesis in the nucleolus. This is the
C-terminal domain of the family.
Length = 93
Score = 29.9 bits (68), Expect = 0.79
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKK 483
++EE K+KKK KK + ++ KKK
Sbjct: 68 DKEERRKDKKKYGKKARLREWKKK 91
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 32.3 bits (74), Expect = 0.79
Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 405 KREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEE 464
R ++ E+E +E ++ + + + + I+ + EE EE E +
Sbjct: 822 NRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELE-EELEELEAALRDL 880
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
E KK++ + + + +E E + EE +
Sbjct: 881 ESRLGDLKKERDELEAQLRELERKIEELE 909
Score = 31.6 bits (72), Expect = 1.2
Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 5/100 (5%)
Query: 401 KLARKRE-----ERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEE 455
+L R RE +R + E E + LS +I + EEE+
Sbjct: 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEK 734
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+E EE EE E++ + K + K+ E EE E+
Sbjct: 735 LKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDL 774
Score = 30.8 bits (70), Expect = 2.0
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E+E +E E+ + KE+ K +K+ + KKEE EEE EE +
Sbjct: 832 EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEA 875
Score = 29.3 bits (66), Expect = 6.5
Identities = 19/91 (20%), Positives = 37/91 (40%)
Query: 405 KREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEE 464
++ RL + E +E ++ Q +L + G EEE EE E
Sbjct: 819 QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALR 878
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ E + KK++ + + + E E + E+ +
Sbjct: 879 DLESRLGDLKKERDELEAQLRELERKIEELE 909
Score = 28.9 bits (65), Expect = 7.5
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 404 RKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEE 463
+R R R++AER + ++ + L + E ++ + EEE E EE
Sbjct: 200 LERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEE 259
Query: 464 -EEKEKK---KEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRR 505
E EK+ E+ ++ KK K EEE+ K+K+ + +I
Sbjct: 260 ISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIAS 305
>gnl|CDD|237631 PRK14162, PRK14162, heat shock protein GrpE; Provisional.
Length = 194
Score = 31.3 bits (71), Expect = 0.79
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EE EK+ +E+ + KK+ KE +EE++EK+
Sbjct: 4 EEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQN 39
Score = 31.3 bits (71), Expect = 0.84
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKK 502
+EE E + +EE + KK+ K+ K++ +E++ E+ +K + +K
Sbjct: 3 KEEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKEIADLKA 53
>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM
protein. Members of this protein family are designated
TraM and are found in a proposed transfer region of a
class of conjugative transposon found in the Bacteroides
lineage [Cellular processes, DNA transformation].
Length = 410
Score = 32.0 bits (73), Expect = 0.80
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
G E + +EE+E + +E + + + E EE+ +K + K R +E
Sbjct: 134 GSFYEYPKTDEEKELLREVEELESRLATEPSPAPELEEQLALMEKSYELAAKYMPRGQE 192
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 32.3 bits (73), Expect = 0.80
Identities = 21/113 (18%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 399 DSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEE 458
+ + +E ++K+A+ + EE ++ + + + P +E E
Sbjct: 274 ELEDDEPDKEAVKKEADSKPEEEDEEDDE-----QEDDQDEEEPPEAAMDKVKLDEPVLE 328
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFL 511
G + E KE +K++ K K++ ++ E+E K + ++RP+ L
Sbjct: 329 GVDLESPKELSSFEKRQAKLKQQIEQLEKENLAPKSWTLKGEVTAKKRPQNSL 381
Score = 30.3 bits (68), Expect = 3.1
Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 19/104 (18%)
Query: 408 ERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEG-------- 459
+ E E E + + + E G G E++EE
Sbjct: 201 NEFLEATEAEEEAALGDEDDFEDYFQDDSEDGKDDEDFGSGEDEEDDEEGNIEYEDFFDP 260
Query: 460 -----------EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
+ E E+ E KE KK+ K ++E+EE++E+E
Sbjct: 261 KEKDKKKDAGDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQE 304
Score = 30.0 bits (67), Expect = 3.5
Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 16/104 (15%)
Query: 415 EREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKK 474
E E E+ + + + E++EE+ EEEE E+K+ ++
Sbjct: 119 EEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQ 178
Query: 475 KKKKKKKKKE----------------EEEEEEEEKKKMMMMMKK 502
++KK K E E EEE +
Sbjct: 179 ATREKKFDKSGVDDKFFKLDEMNEFLEATEAEEEAALGDEDDFE 222
>gnl|CDD|202669 pfam03495, Binary_toxB, Clostridial binary toxin B/anthrax toxin
PA. The N-terminal region of this family contains a
calcium-binding motif that may be an EF-hand.
Length = 406
Score = 32.1 bits (73), Expect = 0.83
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 32 SSVHHHSEHSKQTISHSTSSS---ATSVQHKMKRGTSPALSQAGLSHVASATLSQTTSSS 88
S S +TIS STS+S +V + G S G S SA S + SS+
Sbjct: 93 SKNEDLSNDQGKTISKSTSTSKTYTNTVGASVSAGASLF----GFSGSVSANYSHSWSST 148
Query: 89 VSTNHG 94
V+ +
Sbjct: 149 VAVDWS 154
>gnl|CDD|218845 pfam05991, NYN_YacP, YacP-like NYN domain. This family consists of
bacterial proteins related to YacP. This family is
uncharacterized functionally, but it has been suggested
that these proteins are nucleases due to them containing
a NYN domain. NYN (for N4BP1, YacP-like Nuclease)
domains were discovered by Anantharaman and Aravind.
Based on gene neighborhoods it was suggested that the
bacterial YacP proteins interact with the Ribonuclease
III and TrmH methylase in a processome complex that
catalyzes the maturation of rRNA and tRNA.
Length = 165
Score = 31.0 bits (71), Expect = 0.83
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRR 505
E E + EK+ +K+ +K++K +KK + +E EK ++K+RR
Sbjct: 121 RELAEEVKRAEKKIRKKAEKRRKSRKKYLDRLSDEVLEK------LEKLRR 165
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 32.0 bits (73), Expect = 0.86
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEE---EEEEKKKMMMMMKKIRRRP 507
E+E E EE E +K KK ++ ++ +EE E E EE K+ + ++ R
Sbjct: 403 PREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERF 462
Query: 508 KE 509
+
Sbjct: 463 RR 464
Score = 31.6 bits (72), Expect = 1.0
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 412 KQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKE 471
K+ ER RE+ + R + R + E EEE E + E +E K+E
Sbjct: 398 KEEERPREKEGTEEEE------RREITVYEKRIKKLEETVERLEEENSELKRELEELKRE 451
Query: 472 KKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
+K + + ++ + E ++ + +++ ++I R KE
Sbjct: 452 IEKLESELERFRREVRDKVRKDREIRARDRRIERLEKE 489
Score = 31.2 bits (71), Expect = 1.6
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
EE E+ EEEE+ + +K+ KK ++ E EEE E K+ + +K+ + +
Sbjct: 399 EEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESE 458
Query: 511 LHRI 514
L R
Sbjct: 459 LERF 462
Score = 30.4 bits (69), Expect = 2.8
Identities = 21/100 (21%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 404 RKREERLRKQAEREREEREKAQASMCNL---LSRNPERIDTPRRRGGGGGGEEEEEEEGE 460
KR ++L + ER EE + + + L + + ++ RR E ++ +
Sbjct: 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRR-------EVRDKVRKD 473
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMM 500
E ++++ E+ +K+ ++KKK+ EE E + + + M +
Sbjct: 474 REIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKL 513
>gnl|CDD|222613 pfam14235, DUF4337, Domain of unknown function (DUF4337). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 187 and 201 amino
acids in length. There is a single completely conserved
residue Q that may be functionally important.
Length = 158
Score = 31.0 bits (71), Expect = 0.87
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ + +KEK + + + K+ + K KE E E + +
Sbjct: 73 QAKIARYKKEKARYRSEAKELEAKAKEAEAESDHALHQ 110
>gnl|CDD|236558 PRK09545, znuA, high-affinity zinc transporter periplasmic
component; Reviewed.
Length = 311
Score = 31.5 bits (72), Expect = 0.89
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 93 HGPQSHSHHHQHSHHHHH 110
H+ H + HHH
Sbjct: 123 DDDHDHAGHEKSDEDHHH 140
Score = 30.4 bits (69), Expect = 2.1
Identities = 4/19 (21%), Positives = 5/19 (26%)
Query: 92 NHGPQSHSHHHQHSHHHHH 110
+H H H H
Sbjct: 120 DHHDDDHDHAGHEKSDEDH 138
Score = 30.4 bits (69), Expect = 2.4
Identities = 4/20 (20%), Positives = 6/20 (30%)
Query: 92 NHGPQSHSHHHQHSHHHHHQ 111
+ H HHH +
Sbjct: 123 DDDHDHAGHEKSDEDHHHGE 142
Score = 29.2 bits (66), Expect = 5.6
Identities = 4/22 (18%), Positives = 6/22 (27%)
Query: 89 VSTNHGPQSHSHHHQHSHHHHH 110
+ H H H+ H
Sbjct: 113 LMKGAHDDHHDDDHDHAGHEKS 134
Score = 28.4 bits (64), Expect = 8.7
Identities = 2/22 (9%), Positives = 3/22 (13%)
Query: 90 STNHGPQSHSHHHQHSHHHHHQ 111
+ H H
Sbjct: 116 GAHDDHHDDDHDHAGHEKSDED 137
>gnl|CDD|177400 PHA02571, a-gt.4, hypothetical protein; Provisional.
Length = 109
Score = 30.1 bits (68), Expect = 0.90
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKE 484
+EE EE E + E + EKK K KK ++E
Sbjct: 13 DEEVEELLSELQARNEAEAEKKAAKILKKNRRE 45
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 31.9 bits (73), Expect = 0.91
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
+E+ EE + EEE + E K+ +K+ + E E E+EE +KK
Sbjct: 195 KEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKY 239
>gnl|CDD|218373 pfam05002, SGS, SGS domain. This domain was thought to be unique
to the SGT1-like proteins, but is also found in
calcyclin binding proteins.
Length = 78
Score = 29.3 bits (66), Expect = 0.93
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 475 KKKKKKKKKEEEEEEEEEKKKMMMMMKKI 503
KK K KE+E++EE+ + KK+
Sbjct: 1 KKDWDKLTKEDEDDEEDPSAALNNFFKKL 29
>gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 486
Score = 31.7 bits (72), Expect = 0.95
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 22/130 (16%)
Query: 397 VPDSKLARKREERLRKQAEREREEREKAQ--ASMCNLLSRNPERIDTPRRRGGGGGGEEE 454
VP S+L ++ ++ K+ ++EE ++ + + +N +I + + E
Sbjct: 358 VPISELLKEGSKQETKEQPEKKEEEKEELDIDKIILQIIKNEGKIISAILKNA-----EI 412
Query: 455 EEEEGE-----EEEEEKEKKKEKKKKKK----------KKKKKKEEEEEEEEEKKKMMMM 499
+EEEG+ E+ EE E K KK KK+K+KE+E E EK +
Sbjct: 413 KEEEGKITIKVEKSEEDTLDLEIKSIKKYFPFIEFEEVKKEKEKEKERPEFVEKVLELFK 472
Query: 500 MKKIRRRPKE 509
KI K+
Sbjct: 473 GSKIITYKKK 482
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 31.3 bits (71), Expect = 0.95
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
+ +E + E++ +K K K K K K K K + + + ++ K
Sbjct: 81 PPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKT 124
Score = 30.9 bits (70), Expect = 1.1
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ +E+ + E++ K+ K + K K K K K K + + ++ K
Sbjct: 81 PPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKT 124
Score = 30.5 bits (69), Expect = 1.5
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E + E E EE+ + + E + K K++ + E++ +K K
Sbjct: 55 EPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPK 98
Score = 30.1 bits (68), Expect = 2.4
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ +E+ E++ +K K K K K K K K K + + ++ K
Sbjct: 82 PKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTA 125
Score = 29.8 bits (67), Expect = 3.0
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
+E+ + ++ ++ K K K K K K K K + + ++ + K
Sbjct: 85 KEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKA 128
Score = 29.4 bits (66), Expect = 3.7
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 450 GGEEEEEEEGEEE---EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EE+ + E E E K KEK K +KK KK K + + + + K K
Sbjct: 62 PPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPK 110
Score = 29.4 bits (66), Expect = 4.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E + E+ + EK+ KK K K K K K K + + + + +K
Sbjct: 78 EPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPP 121
Score = 29.4 bits (66), Expect = 4.5
Identities = 9/45 (20%), Positives = 21/45 (46%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
+ E E EE+ + + + + K K+K + E++ ++ K
Sbjct: 57 QPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKP 101
Score = 29.0 bits (65), Expect = 5.2
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E + +E+ + ++K K+ K K K K K K + + + + KK
Sbjct: 77 PEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKP 120
Score = 28.2 bits (63), Expect = 8.7
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EE + E EE+ K + + + K KE+ + E++ KK
Sbjct: 54 EEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKP 97
>gnl|CDD|218652 pfam05602, CLPTM1, Cleft lip and palate transmembrane protein 1
(CLPTM1). This family consists of several eukaryotic
cleft lip and palate transmembrane protein 1 sequences.
Cleft lip with or without cleft palate is a common birth
defect that is genetically complex. The nonsyndromic
forms have been studied genetically using linkage and
candidate-gene association studies with only partial
success in defining the loci responsible for orofacial
clefting. CLPTM1 encodes a transmembrane protein and has
strong homology to two Caenorhabditis elegans genes,
suggesting that CLPTM1 may belong to a new gene family.
This family also contains the human cisplatin resistance
related protein CRR9p which is associated with
CDDP-induced apoptosis.
Length = 437
Score = 31.9 bits (73), Expect = 0.95
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 472 KKKKKKKKKK----KKEEEEEEEEEKKKM 496
KKK KKK K E+EE EEE+
Sbjct: 148 LPKKKVKKKNLLGGKSEKEEPEEEKTPAP 176
>gnl|CDD|219882 pfam08524, rRNA_processing, rRNA processing. This is a family of
proteins that are involved in rRNA processing. In a
localisation study they were found to localise to the
nucleus and nucleolus. The family also includes other
metazoa members from plants to mammals where the protein
has been named BR22 and is associated with TTF-1,
thyroid transcription factor 1. In the lungs, the family
binds TTF-1 to form a complex which influences the
expression of the key lung surfactant protein-B (SP-B)
and -C (SP-C), the small hydrophobic surfactant proteins
that maintain surface tension in alveoli.
Length = 150
Score = 30.6 bits (69), Expect = 0.95
Identities = 17/58 (29%), Positives = 34/58 (58%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
E+E E+E EK+ K K+ +K +KKKK +E++E +++K+ + +R+ +
Sbjct: 43 EKEGYAVPEKESAEKQVKSSKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQKEL 100
Score = 29.1 bits (65), Expect = 3.2
Identities = 12/65 (18%), Positives = 37/65 (56%)
Query: 444 RRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKI 503
R+ +E++E ++ + E+ +K+ K++K+ +K + +++++E E+++ + K
Sbjct: 66 RKFEKKKKLDEKKEIAKQRKREQREKELAKRQKELEKIELSKKKQKERERRRKKLTKKTK 125
Query: 504 RRRPK 508
+P
Sbjct: 126 SGQPL 130
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 32.0 bits (73), Expect = 0.97
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 16/55 (29%)
Query: 449 GGGEEEEEEEGEEEEEEKE------------KKKEKKKKKKKKKK----KKEEEE 487
G EE EE GEEE+++ KK KKK K+ K K+EE E
Sbjct: 841 GKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERE 895
>gnl|CDD|236005 PRK07376, PRK07376, NAD(P)H-quinone oxidoreductase subunit F;
Validated.
Length = 673
Score = 31.9 bits (73), Expect = 0.97
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 93 HGPQSHSHHHQHSHHHHHQTATASPPASAIS 123
HH +H HHHH + SP S +
Sbjct: 475 APGHHEGHHEEHGEHHHH---SGSPHESPWT 502
>gnl|CDD|224035 COG1110, COG1110, Reverse gyrase [DNA replication, recombination,
and repair].
Length = 1187
Score = 32.0 bits (73), Expect = 0.97
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
G EE E E + + K +K+ ++ +++ +E E E E++++K
Sbjct: 230 GFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRK 275
Score = 29.3 bits (66), Expect = 6.7
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRR 505
EE E E K ++K +K E EE ++ KK R+
Sbjct: 232 SEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRK 275
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 31.9 bits (73), Expect = 0.99
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 10/69 (14%)
Query: 437 ERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEE------E 490
E + P GG E E EE E + + E + + + +K EE E
Sbjct: 216 ELYEVPEFD----GGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVREILE 271
Query: 491 EEKKKMMMM 499
EK ++
Sbjct: 272 IEKALGDVL 280
>gnl|CDD|224559 COG1645, COG1645, Uncharacterized Zn-finger containing protein
[General function prediction only].
Length = 131
Score = 30.1 bits (68), Expect = 1.0
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKK---IRRRP 507
EEEEEE E E +E+ ++ + + KKE +E+ EK ++ K RR
Sbjct: 56 VVEEEEEEVEAEVQEQLRRSRPELPDDSDELKKEIDEDPASEKLLSVIETLKRIEARRDL 115
Query: 508 KEFL 511
Sbjct: 116 SRAG 119
Score = 27.8 bits (62), Expect = 6.3
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK-----MMMMMKKI- 503
G E EE EEE E + +++ ++ + + E ++E +E+ ++ +K+I
Sbjct: 51 GYREVVVEEEEEEVEAEVQEQLRRSRPELPDDSDELKKEIDEDPASEKLLSVIETLKRIE 110
Query: 504 RRRPKEFLHR 513
RR R
Sbjct: 111 ARRDLSRAGR 120
>gnl|CDD|218163 pfam04592, SelP_N, Selenoprotein P, N terminal region. SelP is the
only known eukaryotic selenoprotein that contains
multiple selenocysteine (Sec) residues, and accounts for
more than 50% of the selenium content of rat and human
plasma. It is thought to be glycosylated. SelP may have
antioxidant properties. It can attach to epithelial
cells, and may protect vascular endothelial cells
against peroxynitrite toxicity. The high selenium
content of SelP suggests that it may be involved in
selenium intercellular transport or storage. The
promoter structure of bovine SelP suggest that it may be
involved in countering heavy metal intoxication, and may
also have a developmental function. The N-terminal
region of SelP can exist independently of the C terminal
region. Zebrafish selenoprotein Pb lacks the C terminal
Sec-rich region, and a protein encoded by the rat SelP
gene and lacking this region has also been reported.
N-terminal region contains a conserved SecxxCys motif,
which is similar to the CysxxCys found in thioredoxins.
It is speculated that the N terminal region may adopt a
thioredoxin fold and catalyze redox reactions. The
N-terminal region also contains a His-rich region, which
is thought to mediate heparin binding. Binding to
heparan proteoglycans could account for the membrane
binding properties of SelP. The function of the
bacterial members of this family is uncharcterised.
Length = 238
Score = 31.4 bits (71), Expect = 1.0
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 74 SHVASATLSQTTSSSVSTNHGPQSHSHHHQHSHHHHHQTATASPPASAISGSKSRGIGDP 133
V AT+++ + +H P HSHH H HHH P +++ S S+ P
Sbjct: 166 KKVTLATVNKPVEAEPRQDH-PHHHSHHEHQGHAHHHPHGHHHPGSNSHSESQQPDPDKP 224
Query: 134 -IPNHILLSEHKPR 146
P L H R
Sbjct: 225 TEPPSGLHHHHNHR 238
>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit,
splicing factor. These splicing factors consist of an
N-terminal arginine-rich low complexity domain followed
by three tandem RNA recognition motifs (pfam00076). The
well-characterized members of this family are auxilliary
components of the U2 small nuclear ribonuclearprotein
splicing factor (U2AF). These proteins are closely
related to the CC1-like subfamily of splicing factors
(TIGR01622). Members of this subfamily are found in
plants, metazoa and fungi.
Length = 509
Score = 31.8 bits (72), Expect = 1.0
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 404 RKREERLRKQAEREREEREKAQASMCNLLSRNPERI-DTPRRRGGGGGGEEEEEEEGEEE 462
R+ ER ++ R R+ R S +L + R D PRRR E+ +
Sbjct: 39 RRSRERSYREDSRPRDRRRYDSRSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDR 98
Query: 463 EEEKEKKKEKKKKKKKKKKK 482
+ +K+ KK+ K
Sbjct: 99 SPSNQWRKDDKKRSLWDIKP 118
>gnl|CDD|224969 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2
[Translation, ribosomal structure and biogenesis].
Length = 109
Score = 29.7 bits (67), Expect = 1.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 449 GGGEEEEEEEGEEEEEEKEKKKE 471
G E +E EEEE+E+E ++E
Sbjct: 76 GAEAAAEADEAEEEEKEEEAEEE 98
Score = 28.9 bits (65), Expect = 1.9
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 8/44 (18%)
Query: 449 GGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
G E E E ++E+K++ E EEE +++
Sbjct: 67 AGAAAAAAAGAEAAAEADEAEEEEKEE--------EAEEESDDD 102
Score = 28.5 bits (64), Expect = 3.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 446 GGGGGGEEEEEEEGEEEEEEKE 467
G E +E EE E+EEE +E
Sbjct: 76 GAEAAAEADEAEEEEKEEEAEE 97
Score = 28.5 bits (64), Expect = 3.2
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 12/47 (25%)
Query: 446 GGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
G E E +E +E++KE EE EEE ++
Sbjct: 67 AGAAAAAAAGAEAAAEADEAEEEEKE------------EEAEEESDD 101
>gnl|CDD|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family.
Prothymosin alpha and parathymosin are two ubiquitous
small acidic nuclear proteins that are thought to be
involved in cell cycle progression, proliferation, and
cell differentiation.
Length = 106
Score = 29.9 bits (67), Expect = 1.1
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 448 GGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
G EE +EG++E EE+E+ E ++++ + +++E EEEEE E
Sbjct: 36 GNENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETE 80
Score = 28.8 bits (64), Expect = 2.7
Identities = 18/43 (41%), Positives = 31/43 (72%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
E++EEEEGE EEEE E+++E + K+ + EE++ E +++K
Sbjct: 59 EDDEEEEGEGEEEEGEEEEETEGATGKRAAEDEEDDAETKKQK 101
Score = 28.4 bits (63), Expect = 2.8
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
G +E ++E EEEEE E +E++ + ++++ ++EEE E K+
Sbjct: 43 GAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETEGATGKR 86
Score = 27.2 bits (60), Expect = 8.6
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 447 GGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEE 487
G GEEEE EE EE E K+ + ++ + KK++ +E
Sbjct: 64 EEGEGEEEEGEEEEETEGATGKRAAEDEEDDAETKKQKTDE 104
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 31.6 bits (71), Expect = 1.2
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 5/49 (10%)
Query: 452 EEEEE-----EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E+EE+ E+GEE + E+ K+ ++ KKKK KK K+ +E E + K K
Sbjct: 218 EDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKEYEVQNKHK 266
Score = 30.8 bits (69), Expect = 1.8
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 16/120 (13%)
Query: 392 LTFKPVPDSKLARKREERLR-KQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGG 450
T P+S + R L K+ + E E + + L+ ++ E I G
Sbjct: 155 FTITSTPESDMKRGTRITLHLKEDQMEYLEPRRLK----ELIKKHSEFI--------GYD 202
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
E E+ E+E +++++ KK + ++ K EE +E +E KKK KK++ KE+
Sbjct: 203 IELMVEKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKK---KTKKVKEVTKEY 259
>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 90 amino acids in length.
There are two completely conserved L residues that may
be functionally important.
Length = 70
Score = 28.8 bits (65), Expect = 1.2
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
++E + E E+ EEE+E +K +++K+++K K EE E E
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 28.5 bits (64), Expect = 1.4
Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+E + EE + EEEE+ +K+E++K+++K K +E E E + +K
Sbjct: 27 KELKAEEEKREEEEEARKREERKEREKNKSFEELLNESELDWRK 70
Score = 27.3 bits (61), Expect = 3.7
Identities = 13/40 (32%), Positives = 28/40 (70%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
++E + EEE+ E+E++ K++++K+++K K EE E +
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 26.9 bits (60), Expect = 5.1
Identities = 11/41 (26%), Positives = 31/41 (75%)
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
++E + EEE++E+++E +K++++K+++K + EE + ++
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESEL 66
>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional.
Length = 310
Score = 31.1 bits (71), Expect = 1.2
Identities = 7/28 (25%), Positives = 9/28 (32%)
Query: 473 KKKKKKKKKKKEEEEEEEEEKKKMMMMM 500
EEEEEE+ M +
Sbjct: 281 AAAAAAAAAAAAPAEEEEEEEDDMGFGL 308
Score = 30.4 bits (69), Expect = 2.3
Identities = 8/29 (27%), Positives = 9/29 (31%), Gaps = 3/29 (10%)
Query: 471 EKKKKKKKKKKKKEEEEEEEEEKKKMMMM 499
EEEEEEE+ M
Sbjct: 281 AAAAAAAAAAAAPAEEEEEEED---DMGF 306
Score = 29.2 bits (66), Expect = 5.1
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 468 KKKEKKKKKKKKKKKKEEEEEEE 490
++EEEEE++
Sbjct: 281 AAAAAAAAAAAAPAEEEEEEEDD 303
>gnl|CDD|221931 pfam13136, DUF3984, Protein of unknown function (DUF3984). This
family of proteins is functionally uncharacterized. This
family of proteins is found in eukaryotes. Proteins in
this family are typically between 393 and 442 amino
acids in length.
Length = 301
Score = 31.2 bits (71), Expect = 1.2
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 17/84 (20%)
Query: 45 ISHSTSSSATSVQHKMKRGTSPALSQAGLSHVASATLSQTTSSSVSTNHGPQSHSHHHQH 104
+SHS S S + HK K+ + + +S T S S+ H HH
Sbjct: 56 LSHSRSPSRSR-LHKRKKSSRRS------------PMSDTLLKSKSSAHLL----HHQST 98
Query: 105 SHHHHHQTATASPPASAISGSKSR 128
H ++ T SP + S + R
Sbjct: 99 RSHRRSKSGTTSPRKPSSSAHRRR 122
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 31.3 bits (71), Expect = 1.2
Identities = 13/53 (24%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLHRI 514
E+EE E+ E +K+++++++ ++EEEE++ K R+ + L +
Sbjct: 143 EQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNK--------RKNKQALLDEL 187
Score = 29.4 bits (66), Expect = 4.1
Identities = 12/36 (33%), Positives = 27/36 (75%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E+EE E+ + EK+++++++ ++EEEE++ K+K
Sbjct: 143 EQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRK 178
>gnl|CDD|107059 PHA01746, PHA01746, hypothetical protein.
Length = 131
Score = 29.9 bits (67), Expect = 1.2
Identities = 13/29 (44%), Positives = 24/29 (82%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEE 488
+EEE++ E+++EK++K ++K +KK EEE
Sbjct: 102 QEEEDDMEQQEEKEEKGREKGRKKNVEEE 130
Score = 28.7 bits (64), Expect = 3.6
Identities = 12/24 (50%), Positives = 21/24 (87%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKK 476
+EEE++ E++EE++EK +EK +KK
Sbjct: 102 QEEEDDMEQQEEKEEKGREKGRKK 125
Score = 28.0 bits (62), Expect = 5.8
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEE 485
+E E++ E++E+K+EK ++K +KK +EE
Sbjct: 102 QEEEDDMEQQEEKEEKGREKGRKKNVEEE 130
>gnl|CDD|227666 COG5374, COG5374, Uncharacterized conserved protein [Function
unknown].
Length = 192
Score = 30.5 bits (69), Expect = 1.3
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ + + E +K +E+ K K + E+ ++E KKK
Sbjct: 149 KARLRKAQILLEGLQKNQEELFKLLDKYNELREQVQKESSKKK 191
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein. This
family includes the radial spoke head proteins RSP4 and
RSP6 from Chlamydomonas reinhardtii, and several
eukaryotic homologues, including mammalian RSHL1, the
protein product of a familial ciliary dyskinesia
candidate gene.
Length = 481
Score = 31.2 bits (71), Expect = 1.3
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 12/41 (29%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
E+++EE E+E+EE+E+++E E EE E EE
Sbjct: 344 PEQKDEEEEQEDEEEEEEEE------------EPEEPEPEE 372
Score = 30.4 bits (69), Expect = 2.3
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 15/42 (35%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
+++EEEE E+EEEE+E +EE EE E E+
Sbjct: 346 QKDEEEEQEDEEEEEE---------------EEEPEEPEPEE 372
Score = 30.4 bits (69), Expect = 2.8
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 12/42 (28%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
E+++EEE +E+EEE+E+++E EE E EE
Sbjct: 344 PEQKDEEEEQEDEEEEEEEEE------------PEEPEPEEG 373
Score = 30.0 bits (68), Expect = 3.4
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 32/77 (41%)
Query: 452 EEEEEEEGEEEEEEKEKKKEK--------------------------------KKKKKKK 479
EEEEEE EEEE + + E+ ++
Sbjct: 287 LEEEEEEEEEEEPAERDELEENPDFEGLEVRELADSLDNWVHHVQHILPQGRCTWVNPEQ 346
Query: 480 KKKKEEEEEEEEEKKKM 496
K ++EE+E+EEEE+++
Sbjct: 347 KDEEEEQEDEEEEEEEE 363
Score = 29.6 bits (67), Expect = 4.5
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEE 486
EEEEEE E E ++E + E++++++ ++ KEEE
Sbjct: 170 GEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
>gnl|CDD|225368 COG2811, NtpF, Archaeal/vacuolar-type H+-ATPase subunit H [Energy
production and conversion].
Length = 108
Score = 29.7 bits (67), Expect = 1.3
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIR 504
EE E EE EEE EK ++ ++ +++ ++E EE E +K+ ++ K
Sbjct: 38 REEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEASAILSKAA 90
Score = 27.4 bits (61), Expect = 8.6
Identities = 15/56 (26%), Positives = 33/56 (58%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
+ E +EE EE +++ E+ K+ +++ ++ EE EEE +K ++++ R +E
Sbjct: 14 KAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEE 69
>gnl|CDD|223945 COG1013, PorB, Pyruvate:ferredoxin oxidoreductase and related
2-oxoacid:ferredoxin oxidoreductases, beta subunit
[Energy production and conversion].
Length = 294
Score = 31.1 bits (71), Expect = 1.3
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEE-----EEEEEEKKKMMMMMKKIRRRPKE 509
E G+ EEE+ + ++ + EE + E +K+ + + K
Sbjct: 233 RYEPGKAEEEKGKDIPIGIFYPVEEYLEYEERFKHLTKSNPELIQKLQKDVDERWEELKR 292
Query: 510 F 510
Sbjct: 293 L 293
>gnl|CDD|148679 pfam07218, RAP1, Rhoptry-associated protein 1 (RAP-1). This family
consists of several rhoptry-associated protein 1 (RAP-1)
sequences which appear to be specific to Plasmodium
falciparum.
Length = 790
Score = 31.6 bits (71), Expect = 1.3
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEE 487
G++ EEE E +EE E+ +E KK+ +K + +EE
Sbjct: 237 GDKVAEEEEFELDEEHEEAEEDKKEALEKIGAEGDEE 273
Score = 30.0 bits (67), Expect = 3.8
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRR 505
EEEE E +EE +E +++KK+ +K + +EE+ + +E+ K + K R
Sbjct: 242 EEEEFELDEEHEEAEEDKKEALEKIGAEGDEEKFKFDEEIKFIEHDVKDRN 292
Score = 28.5 bits (63), Expect = 9.8
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFL 511
EEEE E EE EE +E KKE +K + +++ + +EE + + + + I EF
Sbjct: 242 EEEEFELDEEHEEAEEDKKEALEKIGAEGDEEKFKFDEEIKFIEHDVKDRNIAGGFSEFF 301
Query: 512 HRI 514
++
Sbjct: 302 SKL 304
>gnl|CDD|227780 COG5493, COG5493, Uncharacterized conserved protein containing a
coiled-coil domain [Function unknown].
Length = 231
Score = 31.0 bits (70), Expect = 1.3
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRR 505
EE E E+ +KE EK + +K+K K++ + + ++++ + I+R
Sbjct: 49 EELRKETEQRQKELADEKLEVRKQKATKEDLKLLQRFQEEEFRATKEDIKR 99
>gnl|CDD|240253 PTZ00068, PTZ00068, 60S ribosomal protein L13a; Provisional.
Length = 202
Score = 30.8 bits (70), Expect = 1.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EE+ KE+ KKK K +K +E ++ K
Sbjct: 156 EEKRKERAAAYYKKKVKLRKAWKEARKKALAKLP 189
>gnl|CDD|234055 TIGR02907, spore_VI_D, stage VI sporulation protein D. SpoVID, the
stage VI sporulation protein D, is restricted to
endospore-forming members of the bacteria, all of which
are found among the Firmicutes. It is widely distributed
but not quite universal in this group. Between
well-conserved N-terminal and C-terminal domains is a
poorly conserved, low-complexity region of variable
length, rich enough in glutamic acid to cause spurious
BLAST search results unless a filter is used. The seed
alignment for this model was trimmed, in effect, by
choosing member sequences in which these regions are
relatively short. SpoVID is involved in spore coat
assembly by the mother cell compartment late in the
process of sporulation [Cellular processes, Sporulation
and germination].
Length = 338
Score = 31.0 bits (70), Expect = 1.4
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
E E E+E + +E+ E +++ KK EEEEE+ E + + K R+ +E
Sbjct: 231 ELEVEDEEKALDEQTEDPQQEDALAGDAKKALEEEEEKGERPENATYLTKLFRKAEEE 288
Score = 29.5 bits (66), Expect = 4.4
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+E E E +EE+ E+ ++ +++ K+ EEEEE+ ++
Sbjct: 228 DETELEVEDEEKALDEQTEDPQQEDALAGDAKKALEEEEEKGER 271
Score = 29.5 bits (66), Expect = 5.1
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
E+E E E E+EE+ +++ E +++ ++ EEEEEK
Sbjct: 227 EDETELEVEDEEKALDEQTEDPQQEDALAGDAKKALEEEEEKG 269
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 31.2 bits (70), Expect = 1.5
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPR-RRGGGGGGEEEEEEEGEE 461
A+KR+ R++ E+E+E ++ R ER R + G+ E + + E
Sbjct: 225 AKKRDPRIKSFKEQEKEMKKI----------RKWEREAGARLKALAALKGKAEAKNKAEI 274
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEE 489
E E KKK K+ KK + E++
Sbjct: 275 EAEALASATAVKKKAKEVMKKALKMEKK 302
>gnl|CDD|218769 pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA).
This family consists of the N-terminal region of the
prokaryotic fibronectin-binding protein. Fibronectin
binding is considered to be an important virulence
factor in streptococcal infections. Fibronectin is a
dimeric glycoprotein that is present in a soluble form
in plasma and extracellular fluids; it is also present
in a fibrillar form on cell surfaces. Both the soluble
and cellular forms of fibronectin may be incorporated
into the extracellular tissue matrix. While fibronectin
has critical roles in eukaryotic cellular processes,
such as adhesion, migration and differentiation, it is
also a substrate for the attachment of bacteria. The
binding of pathogenic Streptococcus pyogenes and
Staphylococcus aureus to epithelial cells via
fibronectin facilitates their internalisation and
systemic spread within the host.
Length = 447
Score = 31.1 bits (71), Expect = 1.5
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 16/80 (20%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
++ E + +Q E +EE E ++ L + E+ EE EE
Sbjct: 384 LKRAVEAVEEQIEETKEEIEYLESVEAQLENAE----------------SLEDLEEIREE 427
Query: 463 EEEKEKKKEKKKKKKKKKKK 482
E+ KEKK+KKKKKKKK
Sbjct: 428 LIEQGYLKEKKRKKKKKKKK 447
Score = 29.1 bits (66), Expect = 5.6
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
++ E + +++ + EK+ E + +K +KK +K E+E EE E
Sbjct: 282 SKKAERDRVKQKRSDLEKRVENELEKLEKKLEKLEKELEEAENA 325
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 31.3 bits (71), Expect = 1.5
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
+ + EK KKK K KKKKK ++E K
Sbjct: 116 RKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIK 151
Score = 29.4 bits (66), Expect = 6.4
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
E+ K+K K KKKKK ++E +
Sbjct: 123 EKLKKKITVNKSTNKKKKKVLSSKDELIKY 152
>gnl|CDD|232958 TIGR00399, metG_C_term, methionyl-tRNA synthetase C-terminal
region/beta chain. The methionyl-tRNA synthetase (metG)
is a class I amino acyl-tRNA ligase. This model
describes a region of the methionyl-tRNA synthetase that
is present at the C-terminus of MetG in some species (E.
coli, B. subtilis, Thermotoga maritima, Methanobacterium
thermoautotrophicum), and as a separate beta chain in
Aquifex aeolicus. It is absent in a number of other
species (e.g. Mycoplasma genitalium, Mycobacterium
tuberculosis), while Pyrococcus horikoshii has both a
full length MetG and a second protein homologous to the
beta chain only. Proteins hit by This model should
called methionyl-tRNA synthetase beta chain if and only
if the model metG hits a separate protein not also hit
by This model [Protein synthesis, tRNA aminoacylation].
Length = 137
Score = 29.7 bits (67), Expect = 1.5
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
+++ E+ K K KKK+KK + +K E ++E
Sbjct: 1 DKKIEELKLKGAKKKEKKDEGEKALEPQKET 31
Score = 28.5 bits (64), Expect = 4.4
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 467 EKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+KK E+ K K KKK+K++E E+ E +K
Sbjct: 1 DKKIEELKLKGAKKKEKKDEGEKALEPQK 29
Score = 28.2 bits (63), Expect = 5.9
Identities = 12/48 (25%), Positives = 28/48 (58%)
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIR 504
++ EE + K KK++KK + +K + ++E ++ +K+ + + KI
Sbjct: 1 DKKIEELKLKGAKKKEKKDEGEKALEPQKETITIDDFEKVDLRVGKIL 48
>gnl|CDD|227708 COG5421, COG5421, Transposase [DNA replication, recombination, and
repair].
Length = 480
Score = 31.2 bits (71), Expect = 1.5
Identities = 19/106 (17%), Positives = 43/106 (40%), Gaps = 9/106 (8%)
Query: 408 ERLRKQAEREREER--EKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEE 465
+L+K+ E+ R ++ + + +L + + E+ ++
Sbjct: 276 YKLQKKEEQTLRTRIEKELEKAEKSLEKLKGREFNCEKD-------ARIAAEKILKDYSS 328
Query: 466 KEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFL 511
E + K KKK+++ K ++EE K + K I+ P++ L
Sbjct: 329 VEFLEVDFKSKKKREEAKRGRPRKDEELKTYYRINKNIKVSPEQIL 374
>gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II). Bone
sialoprotein (BSP) is a major structural protein of the
bone matrix that is specifically expressed by
fully-differentiated osteoblasts. The expression of bone
sialoprotein (BSP) is normally restricted to mineralised
connective tissues of bones and teeth where it has been
associated with mineral crystal formation. However, it
has been found that ectopic expression of BSP occurs in
various lesions, including oral and extraoral
carcinomas, in which it has been associated with the
formation of microcrystalline deposits and the
metastasis of cancer cells to bone.
Length = 291
Score = 30.8 bits (69), Expect = 1.6
Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 401 KLARKREERLRKQAEREREEREKA----QASMCNLLSRNPERIDTPRRRGGGGGGEEEEE 456
K A K +E + E E EE E+A N S N +D GG GEE EE
Sbjct: 127 KKATKEDESDEDEEEEEEEEEEEAEVEENEQGTNGTSTNSTEVDHGNGSSGGDNGEEGEE 186
Query: 457 EEGEEEEEE 465
E E E E
Sbjct: 187 ESVTEAEAE 195
>gnl|CDD|179647 PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.
Length = 200
Score = 30.3 bits (69), Expect = 1.6
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 261 GLPHGL-GMPGVDSVK----HEALTISGDEGSMQPEEEEI 295
GLP+ G VD V + A TI+G +GS QP E E+
Sbjct: 142 GLPYAFQGQMDVDEVTGGSPYGATTIAGGDGSRQPSENEL 181
>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO. Bacillus
spores are protected by a protein shell consisting of
over 50 different polypeptides, known as the coat. This
family of proteins has an important morphogenetic role
in coat assembly, it is involved in the assembly of at
least 5 different coat proteins including CotB, CotG,
CotS, CotSA and CotW. It is likely to act at a late
stage of coat assembly.
Length = 185
Score = 30.2 bits (68), Expect = 1.6
Identities = 18/78 (23%), Positives = 35/78 (44%)
Query: 404 RKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEE 463
+ E+ K+ E + ++ + + + + P R E+EE + EE+E
Sbjct: 35 KADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKE 94
Query: 464 EEKEKKKEKKKKKKKKKK 481
EE E K+++ K+KK
Sbjct: 95 EEAEDVKQQEVFSFKRKK 112
Score = 28.3 bits (63), Expect = 6.7
Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 416 REREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKK 475
+ E+ E+ + S ++ S+ E+ E E E E++EKE+ ++++K
Sbjct: 35 KADEKEEEKENSDEHVKSKEEEQKI-EYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEK 93
Query: 476 KKKKKKKKEEEEEEEEEKKKMMMM 499
+++ + K++E + KK M
Sbjct: 94 EEEAEDVKQQEVFSFKRKKPFKEM 117
Score = 27.9 bits (62), Expect = 9.1
Identities = 16/62 (25%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKI---RRRPK 508
+EEE++ EE E++++ E +++ ++++KEE +EEE++++ + ++ +R K
Sbjct: 53 KEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFSFKRKK 112
Query: 509 EF 510
F
Sbjct: 113 PF 114
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 31.4 bits (71), Expect = 1.6
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMM 499
GE +K ++ KK KK KK E E EE M
Sbjct: 1189 GESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAM 1229
Score = 31.0 bits (70), Expect = 1.8
Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 15/102 (14%)
Query: 408 ERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEE-- 465
++L K+ + E REK Q + S +++ + ++ E E EE
Sbjct: 1166 DKLDKEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYG 1225
Query: 466 -------------KEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
K K + KKK K++EEE+E + K
Sbjct: 1226 SSAMETENVAEVVKPKGRAGAKKKAPAAAKEKEEEDEILDLK 1267
Score = 30.2 bits (68), Expect = 3.9
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMM 500
+ ++ KK KK KK E E EE M
Sbjct: 1196 KVSRQAPKKPAPKKTTKKASESETTEETYGSSAMET 1231
>gnl|CDD|227441 COG5110, RPN1, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 881
Score = 31.1 bits (70), Expect = 1.7
Identities = 15/56 (26%), Positives = 32/56 (57%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
+E ++ ++ +E+ + +K+ KK KKKEEEE+ EE + ++ + R ++
Sbjct: 3 DESDKKQQTIDEQSQISPEKQTPNKKDKKKEEEEQLSEEDAMLKGDLELLVERIQD 58
Score = 29.1 bits (65), Expect = 7.5
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
+E +++ + +E+ + EK+ KK KKK+EEE+ EE+
Sbjct: 3 DESDKKQQTIDEQSQISPEKQTPNKKDKKKEEEEQLSEEDAM 44
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 30.2 bits (68), Expect = 1.7
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPK 508
+ E K EKK KKKK + KE +++++E+KK KK R P+
Sbjct: 133 DSEGLKGHEKKHKKKKHEDDKERKKKKKEKKK------KKKRHSPE 172
Score = 30.2 bits (68), Expect = 1.9
Identities = 14/45 (31%), Positives = 30/45 (66%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
+ E +G E++ +K+K ++ K++KKKKK+KK++++ E +
Sbjct: 133 DSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRHSPEHPGVG 177
Score = 29.4 bits (66), Expect = 2.7
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 449 GGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEE 487
G E++ + ++ E++KE+KK+KK+KKKKKK+ E
Sbjct: 136 GLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRHSPEHP 174
Score = 28.3 bits (63), Expect = 7.9
Identities = 15/39 (38%), Positives = 28/39 (71%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEE 489
G + E++ ++++ E +K+++KKKK+KKKKKK+ E
Sbjct: 136 GLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRHSPEHP 174
Score = 27.9 bits (62), Expect = 8.6
Identities = 17/53 (32%), Positives = 35/53 (66%)
Query: 433 SRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEE 485
+++P +TP G G E++ +++ E+++E++KKK++KKKKKK+ +
Sbjct: 122 TQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRHSPEHP 174
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 31.2 bits (71), Expect = 1.7
Identities = 12/50 (24%), Positives = 26/50 (52%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKI 503
EE + +E ++ ++K ++ ++ E +EE KK++ +KKI
Sbjct: 451 SLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKI 500
Score = 30.4 bits (69), Expect = 2.7
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 423 KAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKK 482
K +L E + + EE E+ E+ E+ E ++E KK+ KK KK
Sbjct: 440 KKFLEEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKK 499
Query: 483 KEEEEE---------EEEEKKKMMMMMKK 502
E + EE +K+ ++ K
Sbjct: 500 IPEVDTYLLLEELGINEETYEKLEALLAK 528
Score = 29.3 bits (66), Expect = 7.0
Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEE--EEEEEEEKKKMMMMMKKIRRRP 507
EEE + EE ++ K+ ++ ++K E E+ E +++ + KK+++ P
Sbjct: 443 LEEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIP 501
>gnl|CDD|217565 pfam03449, GreA_GreB_N, Transcription elongation factor,
N-terminal. This domain adopts a long alpha-hairpin
structure.
Length = 71
Score = 28.2 bits (64), Expect = 1.7
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 175 QLELEHLEREKREREIRELRE-RELNDR 201
Q ELE L+ +R I+ + E RE D
Sbjct: 12 QEELERLKNVERPEIIKAIAEAREHGDL 39
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 30.9 bits (70), Expect = 1.7
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIR 504
E+ +E E+ ++E E++ E+ K++++ KK + E+E +E K + IR
Sbjct: 535 EKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIR 586
Score = 30.9 bits (70), Expect = 2.0
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK-KKMMMMMKKIRRRPKE 509
E E+ E+E+ +KE ++E ++ K++++ KK E E+E +E K + ++ I R KE
Sbjct: 532 EHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKE 590
Score = 29.4 bits (66), Expect = 5.5
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
G +EE E+ EK+ E+K + +K K++E+ ++E E++
Sbjct: 507 GEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQE 551
Score = 28.6 bits (64), Expect = 9.5
Identities = 15/63 (23%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 453 EEEEEEGEE--EEEEKEKKK-EKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
E++ E E+ +E+EK KK+ E++ ++ K++++ ++ E E+E ++ + + K++ +E
Sbjct: 528 EQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRE 587
Query: 510 FLH 512
Sbjct: 588 LKE 590
>gnl|CDD|219355 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 31.0 bits (70), Expect = 1.8
Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 393 TFKPVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGE 452
KP P ER + + + +R RRR
Sbjct: 315 APKPEPIYTWEELLRERFPSDLFAISSLPDSDSEASDSGPTR-----KRKRRRVPPLPEY 369
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKK 480
+E+E + +E+E + +KE+K+++++ K
Sbjct: 370 SSDEDEDDSDEDEVDYEKERKRRREEDK 397
>gnl|CDD|237628 PRK14156, PRK14156, heat shock protein GrpE; Provisional.
Length = 177
Score = 30.2 bits (68), Expect = 1.8
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
E EEE E E EE E+ E+ +K + + E +E E + + M+ I+RR E
Sbjct: 9 EVEEEVEATETEETVEEVVEETPEKSELELANERADEFENKYLRAHAEMQNIQRRANE 66
>gnl|CDD|113290 pfam04514, BTV_NS2, Bluetongue virus non-structural protein NS2.
This family includes NS2 proteins from other members of
the Orbivirus genus. NS2 is a non-specific
single-stranded RNA-binding protein that forms large
homomultimers and accumulates in viral inclusion bodies
of infected cells. Three RNA binding regions have been
identified in Bluetongue virus serotype 17 at residues
2-11, 153-166 and 274-286. NS2 multimers also possess
nucleotidyl phosphatase activity. The precise function
of NS2 is not known, but it may be involved in the
transport and condensation of viral mRNAs.
Length = 363
Score = 30.6 bits (69), Expect = 1.8
Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 5/94 (5%)
Query: 406 REERLRKQA---EREREEREKAQASMCNLLSR--NPERIDTPRRRGGGGGGEEEEEEEGE 460
+ ER E E E+A + ER RR E
Sbjct: 179 KPERWMGGPDSDEDENPLDEEAPDMTPETSKQDQKEERRAAVERRLAELVEMINWNLEER 238
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
+ KE++ E+ ++ + + E+ E+ E K
Sbjct: 239 RRDLRKEQELEENVERDSDDEDEHGEDSEDGETK 272
Score = 29.5 bits (66), Expect = 4.3
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 418 REEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKK 477
REEREK + + PER GG E+E + E + E K+ +K+++
Sbjct: 162 REEREKEKEEQPMKPAFKPERW-----MGGPDSDEDENPLDEEAPDMTPETSKQDQKEER 216
Query: 478 KKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
+ ++ E E + + +R+ +
Sbjct: 217 RAAVERRLAELVEMINWNLEERRRDLRKEQELE 249
>gnl|CDD|224273 COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family)
[Replication, recombination, and repair].
Length = 248
Score = 30.4 bits (69), Expect = 1.8
Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 18/117 (15%)
Query: 400 SKLARKREERL--RKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEE 457
+ L R + L +++ E E EE E+ + + R++ R +E E
Sbjct: 64 AILLRIKSRMLLPKEEEEAEDEELEEPRDELV-------ARLEEYERY-------KEAAE 109
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLHRI 514
E EEE+ K K + K KK E EE + +KI RR K+
Sbjct: 110 LLAELEEERRDVFSKIKPEIKIKK--ERRPVEEISLIDLFRAYQKILRRVKQEELVE 164
>gnl|CDD|218688 pfam05680, ATP-synt_E, ATP synthase E chain. This family consists
of several ATP synthase E chain sequences which are
components of the CF(0) subunit.
Length = 83
Score = 28.6 bits (64), Expect = 1.8
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEE 485
+++EE+ E E +EK +K K KKK+ K+E
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 28.2 bits (63), Expect = 2.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEE 487
+++EE E E +EK EK K KKK+ ++E
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 27.1 bits (60), Expect = 7.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKK 482
E+ E E +E+ EK K KKK+ K++ K
Sbjct: 37 EKIREYEAQEKLIEKAKAAYAKKKQAKQEAK 67
>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region
[General function prediction only].
Length = 303
Score = 30.8 bits (69), Expect = 1.8
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKK----KKKKKKKEEEEEEEEEKKKM 496
EE E E +E+E+E K K +K+K K +K E E+E E +K+
Sbjct: 249 EESSESESDEDEDEDNKGKIRKRKTDDAKKSRKPHIHIEYEQERENEKI 297
>gnl|CDD|114629 pfam05917, DUF874, Helicobacter pylori protein of unknown function
(DUF874). This family consists of several hypothetical
proteins specific to Helicobacter pylori. The function
of this family is unknown.
Length = 417
Score = 30.6 bits (68), Expect = 1.9
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 408 ERLRKQAEREREEREKAQASMCNLLSRNP-ERIDTPRRRGGGGGGEEEEEEEGEEEEEEK 466
+ +K+AE R+ K+ + + E+ T + + + E+E ++ E+EK
Sbjct: 131 AQAKKEAENARDRANKSGIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEK 190
Query: 467 EKKKEKKKKKKKKKKKKEEEEEEEEEK 493
+K +++K+K K E E+E++K
Sbjct: 191 QKTEQEKQKTSNIANKNAIELEQEKQK 217
Score = 30.3 bits (67), Expect = 3.0
Identities = 16/52 (30%), Positives = 33/52 (63%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKK 502
G E E+EE + E+E+++ +KE + + K ++E+++ E+EK+K +K
Sbjct: 148 GIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQK 199
Score = 29.1 bits (64), Expect = 6.5
Identities = 23/104 (22%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 413 QAEREREE-REKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKE 471
QA++E E R++A S L + ++ G + + E+E+++ E++K+
Sbjct: 132 QAKKEAENARDRANKSGIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQ 191
Query: 472 KKKKKKKKKKKKEEEE--EEEEEKKKMMMMMKKIRRRPKEFLHR 513
K +++K+K + E E+EK+K + + + K+F+
Sbjct: 192 KTEQEKQKTSNIANKNAIELEQEKQKTENEKQDLIKEQKDFIKE 235
>gnl|CDD|216447 pfam01346, FKBP_N, Domain amino terminal to FKBP-type
peptidyl-prolyl isomerase. This family is only found at
the amino terminus of pfam00254. This domain is of
unknown function.
Length = 124
Score = 29.5 bits (67), Expect = 1.9
Identities = 11/44 (25%), Positives = 24/44 (54%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+EE ++ + +++ + K++ K +KK ++ K E E KK
Sbjct: 67 DEEIQKALQAFQKKLQAKQQAKAEKKAEENKAAGEAFLAENAKK 110
Score = 28.3 bits (64), Expect = 4.7
Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 456 EEEGEE-----EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+EE ++ +++ + K++ K +KK ++ K E E KK+
Sbjct: 67 DEEIQKALQAFQKKLQAKQQAKAEKKAEENKAAGEAFLAENAKKE 111
>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A.
Length = 977
Score = 31.1 bits (70), Expect = 1.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 467 EKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
E K+KK KKKK KKKE + + +++M
Sbjct: 119 ESWKDKKNKKKKSAKKKEAHKAQIPPEQQM 148
Score = 29.6 bits (66), Expect = 5.9
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEE--EEEEEEEK 493
E K+KK +KKK KKK+ K + E++ EEK
Sbjct: 119 ESWKDKKNKKKKSAKKKEAHKAQIPPEQQMEEK 151
>gnl|CDD|233605 TIGR01865, cas_Csn1, CRISPR-associated protein Cas9/Csn1, subtype
II/NMEMI. CRISPR loci appear to be mobile elements with
a wide host range. This model represents a protein found
only in CRISPR-containing species, near other
CRISPR-associated proteins (cas), as part of the NMENI
subtype of CRISPR/Cas locus. The species range so far
for this protein is animal pathogens and commensals only
[Mobile and extrachromosomal element functions, Other].
Length = 805
Score = 30.9 bits (70), Expect = 1.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EE+ G+ +E+ KK E K K+ KE +EE E
Sbjct: 525 EEQGTNFGKRNSKERYKKNEDKIKEFASALGKEILKEEPTENSS 568
>gnl|CDD|179580 PRK03449, PRK03449, putative inner membrane protein translocase
component YidC; Provisional.
Length = 304
Score = 30.4 bits (69), Expect = 1.9
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 9/32 (28%)
Query: 461 EEEEEKEKKKEKK---------KKKKKKKKKK 483
EEE +K+ K E++ K K+ KKK
Sbjct: 273 EEEAKKQAKAERRAANAPKPGAKPKRSKKKAP 304
>gnl|CDD|221466 pfam12220, U1snRNP70_N, U1 small nuclear ribonucleoprotein of 70kDa
MW N terminal. This domain is found in eukaryotes. This
domain is about 90 amino acids in length. This domain is
found associated with pfam00076. This domain is part of
U1 snRNP, which is the pre-mRNA binding protein of the
penta-snRNP spliceosome complex. It extends over a
distance of 180 A from its RNA binding domain, wraps
around the core domain of U1 snRNP consisting of the
seven Sm proteins and finally contacts U1-C, which is
crucial for 5'-splice-site recognition.
Length = 94
Score = 28.8 bits (65), Expect = 2.0
Identities = 14/40 (35%), Positives = 28/40 (70%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
++ ++E E E +K+E++K++KK+K +K+ EEE +E
Sbjct: 48 KDYKDEPPPEPTETWLEKREREKREKKEKLEKKLEEELKE 87
Score = 28.0 bits (63), Expect = 3.8
Identities = 6/39 (15%), Positives = 26/39 (66%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMM 498
++ ++E + + +K++++K+E++E+ E++ ++ +
Sbjct: 48 KDYKDEPPPEPTETWLEKREREKREKKEKLEKKLEEELK 86
Score = 26.8 bits (60), Expect = 7.8
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
++ + E E E EK++++K++KK+K E++ EEE K+
Sbjct: 48 KDYKDEPPPEPTETWLEKREREKREKKEKLEKKLEEELKE 87
>gnl|CDD|217787 pfam03910, Adeno_PV, Adenovirus minor core protein PV.
Length = 336
Score = 30.6 bits (69), Expect = 2.0
Identities = 12/27 (44%), Positives = 22/27 (81%)
Query: 466 KEKKKEKKKKKKKKKKKKEEEEEEEEE 492
K++ K +K K+ KK+KK+EE++E ++E
Sbjct: 25 KDEAKPRKIKRVKKRKKREEKDELDDE 51
Score = 28.6 bits (64), Expect = 8.1
Identities = 11/28 (39%), Positives = 22/28 (78%)
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
+E + +K K+ KK+KK+++K+E ++E E
Sbjct: 26 DEAKPRKIKRVKKRKKREEKDELDDEVE 53
>gnl|CDD|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function
(DUF1764). This is a family of eukaryotic proteins of
unknown function. This family contains many hypothetical
proteins.
Length = 98
Score = 29.0 bits (65), Expect = 2.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
+++ K + + KK +KK KKK+E E EE K
Sbjct: 27 KKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESK 61
Score = 27.0 bits (60), Expect = 9.5
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+++ + + K KK +KK KKK + E EE ++++
Sbjct: 25 KKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRR 64
>gnl|CDD|219621 pfam07890, Rrp15p, Rrp15p. Rrp15p is required for the formation of
60S ribosomal subunits.
Length = 132
Score = 29.3 bits (66), Expect = 2.1
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEE 487
+ +++ K +K EKK K++ + +K++ E
Sbjct: 32 KAKKKLKSEKLEKKAKRQLRAEKRQALE 59
Score = 28.9 bits (65), Expect = 3.2
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ +K+ K EK +KK K++ + E+ + E+ + K
Sbjct: 32 KAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVK 64
>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
region. This family includes the N-terminal regions of
the junctin, junctate and aspartyl beta-hydroxylase
proteins. Junctate is an integral ER/SR membrane calcium
binding protein, which comes from an alternatively
spliced form of the same gene that generates aspartyl
beta-hydroxylase and junctin. Aspartyl beta-hydroxylase
catalyzes the post-translational hydroxylation of
aspartic acid or asparagine residues contained within
epidermal growth factor (EGF) domains of proteins.
Length = 240
Score = 30.3 bits (68), Expect = 2.1
Identities = 19/120 (15%), Positives = 48/120 (40%), Gaps = 5/120 (4%)
Query: 395 KPVPDSKLARKREERLRKQAER--EREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGE 452
K + + + E ++ + R+ ++K + + L E+I ++ G G E
Sbjct: 70 KSTSEPTVPPEEAEPHAEEEGQLAVRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGKE 129
Query: 453 EEEEEEG---EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
+ +E+ E+ +++++ E K ++ + EE E+ K+ M +
Sbjct: 130 PQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVEETASEQYKQDMKEKASEQENEDS 189
>gnl|CDD|235246 PRK04184, PRK04184, DNA topoisomerase VI subunit B; Validated.
Length = 535
Score = 30.6 bits (70), Expect = 2.1
Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Query: 402 LARK-REERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGE 460
+ARK ++ RK+ E E +++ K ++R I E+EE + E
Sbjct: 451 VARKLKKYLSRKRKEEEAKKKAKTFEKYIPEIARKLAEI-----------LEKEEPDIEE 499
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ KK E+++ +++++++ E + +K
Sbjct: 500 VLAKLIGKKLEEEEVEEEEEEEAVVVESAKNYTEK 534
>gnl|CDD|218215 pfam04696, Pinin_SDK_memA, pinin/SDK/memA/ protein conserved
region. Members of this family have very varied
localisations within the eukaryotic cell. pinin is known
to localise at the desmosomes and is implicated in
anchoring intermediate filaments to the desmosomal
plaque. SDK2/3 is a dynamically localised nuclear
protein thought to be involved in modulation of
alternative pre-mRNA splicing. memA is a tumour marker
preferentially expressed in human melanoma cell lines. A
common feature of the members of this family is that
they may all participate in regulating protein-protein
interactions.
Length = 131
Score = 29.4 bits (66), Expect = 2.1
Identities = 14/52 (26%), Positives = 33/52 (63%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKI 503
EE+E++E EE +EK + E++++K+ + +K E++ E+E+ ++ +
Sbjct: 45 EEQEKQEREELRKEKRELFEERRRKQLELRKLEQKMEDEKLQETWHEHNLAL 96
>gnl|CDD|165026 PHA02644, PHA02644, hypothetical protein; Provisional.
Length = 112
Score = 29.2 bits (64), Expect = 2.1
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
E E+E++ E+ E E EKK EK + + +KK +K E E+E+E
Sbjct: 62 ENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKE 101
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 30.1 bits (68), Expect = 2.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 468 KKKEKKKKKKKKKKKKEEEEEEEEEK 493
+K KK KKK K+K EEE++ E
Sbjct: 60 RKPATTKKSKKKDKEKLTEEEKKPES 85
Score = 28.2 bits (63), Expect = 9.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
++K +K KK KKK++E+ EEEKK
Sbjct: 52 KKKRPTTPRKPATTKKSKKKDKEKLTEEEKK 82
Score = 27.8 bits (62), Expect = 9.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 466 KEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
++ KK KKK K+K EEE++ E + K
Sbjct: 60 RKPATTKKSKKKDKEKLTEEEKKPESDDDK 89
>gnl|CDD|236272 PRK08475, PRK08475, F0F1 ATP synthase subunit B; Validated.
Length = 167
Score = 29.6 bits (67), Expect = 2.2
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEE-----KKKMMMMMKKI 503
EE +EK KE K+KK+ KK EE +E+ E KK+ ++ +KI
Sbjct: 63 EEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKI 108
>gnl|CDD|218797 pfam05890, Ebp2, Eukaryotic rRNA processing protein EBP2. This
family consists of several Eukaryotic rRNA processing
protein EBP2 sequences. Ebp2p is required for the
maturation of 25S rRNA and 60S subunit assembly. Ebp2p
may be one of the target proteins of Rrs1p for executing
the signal to regulate ribosome biogenesis. This family
also plays a role in chromosome segregation.
Length = 270
Score = 30.4 bits (69), Expect = 2.2
Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 23/103 (22%)
Query: 399 DSKLARKREERLRKQAERER----------EEREKAQASMCNLLSRNPERIDTPRR-RGG 447
A+K E RKQ E ++ +ER K + M E+I ++ R G
Sbjct: 126 AEAAAKKASEEARKQRELKKFGKQVQVEKLQERAKEKKDML-------EKIKKLKKKRKG 178
Query: 448 GGGGEEEEEEEGEEEEEEKEKKK-----EKKKKKKKKKKKKEE 485
GG + + ++ + KKK + K K+K K+
Sbjct: 179 GGDEGDLFDFLVDDAAKGGSKKKGRKGGAARGKPNAKRKAKDA 221
Score = 29.6 bits (67), Expect = 3.9
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRR 505
E ++ EE K++E KK K+ + +K +E +E KK M+ +KK+++
Sbjct: 126 AEAAAKKASEEARKQRELKKFGKQVQVEKLQERAKE--KKDMLEKIKKLKK 174
>gnl|CDD|217611 pfam03552, Cellulose_synt, Cellulose synthase. Cellulose, an
aggregate of unbranched polymers of beta-1,4-linked
glucose residues, is the major component of wood and
thus paper, and is synthesised by plants, most algae,
some bacteria and fungi, and even some animals. The
genes that synthesise cellulose in higher plants differ
greatly from the well-characterized genes found in
Acetobacter and Agrobacterium sp. More correctly
designated as 'cellulose synthase catalytic subunits',
plant cellulose synthase (CesA) proteins are integral
membrane proteins, approximately 1,000 amino acids in
length. There are a number of highly conserved residues,
including several motifs shown to be necessary for
processive glycosyltransferase activity.
Length = 716
Score = 30.5 bits (69), Expect = 2.3
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 9/50 (18%)
Query: 466 KEKKKEKKKKKKKKKKKKEEE---------EEEEEEKKKMMMMMKKIRRR 506
++K K K KKK K+KE E +E +E++K +M + +R
Sbjct: 313 RKKPKSASKAKKKDSKRKESEAPIFNLEDIDEGDEDEKSSLMSQLSLEKR 362
>gnl|CDD|237322 PRK13261, ureE, urease accessory protein UreE; Provisional.
Length = 159
Score = 29.5 bits (67), Expect = 2.4
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 97 SHSHHHQHSHHHHH 110
HH HSH H H
Sbjct: 146 GAFRHHGHSHDHSH 159
>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated.
Length = 281
Score = 30.4 bits (69), Expect = 2.4
Identities = 17/60 (28%), Positives = 35/60 (58%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFL 511
E E+EE EE E E+ K + ++ +K ++E EE E +++ +++K+ ++ +E L
Sbjct: 102 EREQEEWEEELERLIEEAKAEGYEEGYEKGREEGLEEVRELIEQLNKIIEKLIKKREEIL 161
Score = 28.4 bits (64), Expect = 8.6
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMM 498
+E+E EEEE++ ++ +++ + K+ EE EE+ E +
Sbjct: 30 LSIKEKERLREEEEEQVEQLREEANDEAKEIIEEAEEDAFEIVEAAE 76
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 30.6 bits (69), Expect = 2.4
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMM 498
E+E E +E+E E + + ++ +++ EE+E+E+ ++ K MM
Sbjct: 256 EDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMM 302
Score = 30.2 bits (68), Expect = 2.8
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMK 501
E+E +E E + E K ++ ++E EE+E+E++K++ MM+
Sbjct: 254 ILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMME 303
Score = 30.2 bits (68), Expect = 3.3
Identities = 22/104 (21%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 394 FKPVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEE 453
K K+E++ ++ + E E+ S + I G E+
Sbjct: 218 MSSFFKKKTKEKKEKKEASESTVKEESEEE---------SGKRDVILEDESAEPTGLDED 268
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
E+E+E + E + ++E ++K+K+K+K+ ++ E+E+E ++M
Sbjct: 269 EDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEME 312
Score = 29.8 bits (67), Expect = 3.5
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
Query: 396 PVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEE 455
P P + + EE K+ E+ + ++ M + E P EE E
Sbjct: 274 PKPSGERSDSEEETEEKEKEKRKRLKK-----MMEDEDEDEEMEIVPESPVEEEESEEPE 328
Query: 456 EEEGEEEEEEKEKKK-----EKKKKKKKKKKKKEEEEEE 489
++EEEKE+ +++ +++ KKK ++EE
Sbjct: 329 PPPLPKKEEEKEEVTVSPDGGRRRGRRRVMKKKTFKDEE 367
Score = 29.0 bits (65), Expect = 7.3
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKK 502
+E E +EE EE+ K++ + + + +E+E+E+E K
Sbjct: 233 KEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDS 283
>gnl|CDD|130844 TIGR01784, T_den_put_tspse, conserved hypothetical protein
(putative transposase or invertase). Several lines of
evidence suggest that members of this family (loaded as
a fragment mode model to find part-length matches) are
associated with transposition, inversion, or
recombination. Members are found in small numbers of
genomes, but in large copy numbers in many of those
species, including over 30 full length and fragmentary
members in Treponema denticola. The strongest
similarities are usually within rather than between
species. PSI-BLAST shows similarity to proteins
designated as possible transposases, DNA invertases
(resolvases), and recombinases. In the oral pathogenic
spirochete Treponema denticola, full-length members are
often found near transporters or other membrane
proteins. This family includes members of the putative
transposase family pfam04754.
Length = 270
Score = 30.1 bits (68), Expect = 2.4
Identities = 20/104 (19%), Positives = 30/104 (28%), Gaps = 28/104 (26%)
Query: 381 RGDYNSCCRTDLTFKPVPDSKLARKREERL--RKQAEREREEREKAQASMCNLLSRNPER 438
+G N P + A + + L + E+REK
Sbjct: 172 KGKDNQSVNLIFLQIPFI--QKAEEEIKTLLLSSKELELYEQREKYMTD----------- 218
Query: 439 IDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKK 482
EEEG+EE E+ + K + KK K
Sbjct: 219 -------------AISAEEEGKEEGIEEGILEAKLETAKKLLKN 249
>gnl|CDD|220297 pfam09581, Spore_III_AF, Stage III sporulation protein AF
(Spore_III_AF). This family represents the stage III
sporulation protein AF (Spore_III_AF) of the bacterial
endospore formation program, which exists in some but
not all members of the Firmicutes (formerly called
low-GC Gram-positives). The C-terminal region of these
proteins is poorly conserved.
Length = 185
Score = 29.6 bits (67), Expect = 2.4
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFL 511
EE +E+++ K E + K KEEEEE EE +K I+ +
Sbjct: 131 EESKEKQKSKVEPVVIDTQTSKPKEEEEESEEAEK--------IKNFLADEY 174
Score = 28.8 bits (65), Expect = 4.9
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEE 488
EE +E ++ + E + K K+++++ EE E+
Sbjct: 131 EESKEKQKSKVEPVVIDTQTSKPKEEEEESEEAEK 165
>gnl|CDD|131972 TIGR02926, AhaH, ATP synthase archaeal, H subunit. he A1/A0 ATP
synthase is homologous to the V-type (V1/V0, vacuolar)
ATPase, but functions in the ATP synthetic direction as
does the F1/F0 ATPase of bacteria. The hydrophilic A1
"stalk" complex (AhaABCDEFG) is the site of ATP
generation and is coupled to the membrane-embedded
proton translocating A0 complex. It is unclear precisely
where AhaH fits into these complexes.
Length = 85
Score = 28.3 bits (63), Expect = 2.5
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
EE EEE + EE K+ E++ +K+ +K ++E E+E E K K
Sbjct: 37 LEEAEEEASKLGEEIIKEAEEEIEKEAEKIREEGEKEIEAMKSKAK 82
>gnl|CDD|223618 COG0544, Tig, FKBP-type peptidyl-prolyl cis-trans isomerase
(trigger factor) [Posttranslational modification,
protein turnover, chaperones].
Length = 441
Score = 30.3 bits (69), Expect = 2.5
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 15/86 (17%)
Query: 407 EERLRKQAEREREERE-KAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEE 465
EE ++ + E + + + L N E +D + EE+
Sbjct: 370 EEEIKAEIEELARQYGGEQPEEVIKLYYNNQELLDALKAD--------------ILEEKA 415
Query: 466 KEKKKEKKKKKKKKKKKKEEEEEEEE 491
+ KKK +K+ EE E E
Sbjct: 416 VDLLLANKKKVTEKEVSFEELMNEAE 441
>gnl|CDD|206063 pfam13892, DBINO, DNA-binding domain. DBINO is a DNA-binding
domain found on global transcription activator SNF2L1
proteins and chromatin re-modelling proteins.
Length = 140
Score = 29.2 bits (66), Expect = 2.5
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E+EE+E +K +K+ ++ KK+EE E + +++K
Sbjct: 82 EKEERELRKRAEKEALEQAKKEEELREAKRQQRK 115
>gnl|CDD|221244 pfam11818, DUF3340, C-terminal domain of tail specific protease
(DUF3340). This presumed domain is found at the
C-terminus of tail specific proteases. Its function is
unknown. This family is found in bacteria and
eukaryotes. This presumed domain is typically between 88
to 187 amino acids in length.
Length = 139
Score = 29.1 bits (66), Expect = 2.5
Identities = 9/44 (20%), Positives = 28/44 (63%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E E + E EE+E+++ K++ +++K ++ K ++ +++++
Sbjct: 77 EAERKAEREEDEKKRLKRENERRKALGEEPLKSLDDLPKDKEEP 120
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 30.6 bits (69), Expect = 2.6
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
+E KEKK+EK ++K ++ K +E +EE EEE+K
Sbjct: 277 KELKEKKEEKDEEKSEEVKTEEVDEEFEEEEK 308
>gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component
Toc86/159, G and M domains. The long precursor of the
86K protein originally described is proposed to have
three domains. The N-terminal A-domain is acidic,
repetitive, weakly conserved, readily removed by
proteolysis during chloroplast isolation, and not
required for protein translocation. The other domains
are designated G (GTPase) and M (membrane anchor); this
family includes most of the G domain and all of M
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 763
Score = 30.3 bits (68), Expect = 2.6
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 453 EEEEEEGEEEEEE----KEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPK 508
+ +EE GE+E ++ K K + K K+++K EE + K ++ +R K
Sbjct: 397 DSDEESGEDEYDQLPPFKPLTKAQMAKLSKEQRKAYLEEYDYRVKLLQKKQWREELKRMK 456
Query: 509 EF 510
Sbjct: 457 MM 458
>gnl|CDD|239572 cd03490, Topoisomer_IB_N_1, Topoisomer_IB_N_1: A subgroup of the
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB. Topo IB proteins include the
monomeric yeast and human topo I and heterodimeric topo
I from Leishmania donvanni. Topo I enzymes are divided
into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topos I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I have putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 217
Score = 29.9 bits (67), Expect = 2.6
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEE 488
EEEKEKKK K++K+ KKK+ + E
Sbjct: 94 EEEKEKKKNLNKEEKEAKKKERAKRE 119
>gnl|CDD|235185 PRK03980, PRK03980, flap endonuclease-1; Provisional.
Length = 292
Score = 30.2 bits (69), Expect = 2.7
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMM 498
EE E+++E +++ ++K ++ +EE + EE +K
Sbjct: 41 AEEIEERREVREEAEEKYEEAKEEGDLEEARKYAQR 76
>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic
subunit.
Length = 1044
Score = 30.3 bits (68), Expect = 2.7
Identities = 13/61 (21%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 446 GGGGGGEEEEEEEGEEEEEEKEK-KKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIR 504
G G + E E EG E K++ K K +++K+ K++ ++ +++ + ++ + R
Sbjct: 133 GSVAGKDLEAEREGYGNAEWKDRVDKWKTRQEKRGLVNKDDSDDGDDKGDEEEYLLAEAR 192
Query: 505 R 505
+
Sbjct: 193 Q 193
>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A. The CAF-1
or chromatin assembly factor-1 consists of three
subunits, and this is the first, or A. The A domain is
uniquely required for the progression of S phase in
mouse cells, independent of its ability to promote
histone deposition but dependent on its ability to
interact with HP1 - heterochromatin protein 1-rich
heterochromatin domains next to centromeres that are
crucial for chromosome segregation during mitosis. This
HP1-CAF-1 interaction module functions as a built-in
replication control for heterochromatin, which, like a
control barrier, has an impact on S-phase progression in
addition to DNA-based checkpoints.
Length = 76
Score = 28.0 bits (63), Expect = 2.7
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 15/41 (36%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
E EEEEEGE+ E E E ++EEE+++++
Sbjct: 47 EWEEEEEGEDLESEDE---------------EDEEEDDDDD 72
>gnl|CDD|221009 pfam11162, DUF2946, Protein of unknown function (DUF2946). This
family of proteins has no known function.
Length = 119
Score = 29.0 bits (65), Expect = 2.8
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 66 PALSQA-GLSHVASATLSQTTSSSVSTNHGPQSHSHHHQHSHHHHHQTATA 115
P +SQA A L+ S+ + H HQ + H A
Sbjct: 16 PLISQALAAGASADGLLAGEICSADGSGHVAMDLDASHQEAASSAHAHGEA 66
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 30.5 bits (69), Expect = 2.8
Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 16/95 (16%)
Query: 399 DSKLARKRE----------ERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGG 448
+ L RK E + L K E + EK S N + N + +
Sbjct: 189 EGLLERKNELPHLKKLIILDTLIKSKEININKEEKNNGSNVNN-NGNKNNKEEQK----- 242
Query: 449 GGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKK 483
G E E+ E +K+K +K K K+K KK
Sbjct: 243 GNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKK 277
Score = 30.1 bits (68), Expect = 3.8
Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Query: 427 SMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKK--KKKKKKKKE 484
N N E + G +EE++G + E E + K+K +K K+
Sbjct: 214 KEIN---INKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKD 270
Query: 485 EEEEEEEEKKKMMMMMKKIRRRPKEF 510
+E+ ++ +++ + + +
Sbjct: 271 LKEKAKKLGISIILFDDMTKNKTTNY 296
>gnl|CDD|217348 pfam03064, U79_P34, HSV U79 / HCMV P34. This family represents
herpes virus protein U79 and cytomegalovirus early
phosphoprotein P34 (UL112).
Length = 238
Score = 29.8 bits (67), Expect = 2.8
Identities = 19/80 (23%), Positives = 34/80 (42%)
Query: 406 REERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEE 465
+R KQ E+ R E + R D +R GGGGG + ++E
Sbjct: 159 HRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGLSTKDEPP 218
Query: 466 KEKKKEKKKKKKKKKKKKEE 485
KEK+++ +++ + + E
Sbjct: 219 KEKRQKHHDPERRLEPQSHE 238
Score = 29.1 bits (65), Expect = 5.5
Identities = 11/46 (23%), Positives = 29/46 (63%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
++E + +++EK + ++ +K K+ ++KK+EE+ +E+K+
Sbjct: 153 KKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRP 198
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 30.2 bits (68), Expect = 2.8
Identities = 14/61 (22%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEE-------EEEEEKKKMMMMMKKIR 504
EE+ E + +EE E++++ +++++++++K E E E+ ++K+ ++KK
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREKLQNLLKKAS 311
Query: 505 R 505
R
Sbjct: 312 R 312
>gnl|CDD|227925 COG5638, COG5638, Uncharacterized conserved protein [Function
unknown].
Length = 622
Score = 30.1 bits (67), Expect = 2.8
Identities = 10/55 (18%), Positives = 31/55 (56%)
Query: 441 TPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
T +++ E E+ + K +++++ +K+++ KK K++ + + ++KK+
Sbjct: 415 TSHLPASNESESDDKLETTIEKLDRKLRERQENRKERQLKKTKDDSDVDLKDKKE 469
Score = 29.8 bits (66), Expect = 4.3
Identities = 13/62 (20%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 450 GGEEEEEEEGEEE--EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRP 507
E E ++ E E+ K +E+++ +K+++ KK +++ + + K K + KK ++
Sbjct: 420 ASNESESDDKLETTIEKLDRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGK 479
Query: 508 KE 509
Sbjct: 480 HA 481
>gnl|CDD|147685 pfam05663, DUF809, Protein of unknown function (DUF809). This
family consists of several proteins of unknown function
Raphanus sativus (Radish) and Brassica napus (Rape).
Length = 138
Score = 29.0 bits (64), Expect = 2.9
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEE 486
+EE++EG+ E E KE+KKE K + + K++KKE E
Sbjct: 100 KEEKKEGKGEIEGKEEKKEGKGEIEGKEEKKEVE 133
Score = 27.8 bits (61), Expect = 6.9
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
GE E +EE +E + E E K+EKK+ K + + K+E++E E +K
Sbjct: 95 GEIEGKEEKKEGKGEIEGKEEKKEGKGEIEGKEEKKEVENGPRK 138
>gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3. This family
consists of several radial spoke protein 3 (RSP3)
sequences. Eukaryotic cilia and flagella present in
diverse types of cells perform motile, sensory, and
developmental functions in organisms from protists to
humans. They are centred by precisely organised,
microtubule-based structures, the axonemes. The axoneme
consists of two central singlet microtubules, called the
central pair, and nine outer doublet microtubules. These
structures are well-conserved during evolution. The
outer doublet microtubules, each composed of A and B
sub-fibres, are connected to each other by nexin links,
while the central pair is held at the centre of the
axoneme by radial spokes. The radial spokes are T-shaped
structures extending from the A-tubule of each outer
doublet microtubule to the centre of the axoneme. Radial
spoke protein 3 (RSP3), is present at the proximal end
of the spoke stalk and helps in anchoring the radial
spoke to the outer doublet. It is thought that radial
spokes regulate the activity of inner arm dynein through
protein phosphorylation and dephosphorylation.
Length = 288
Score = 30.0 bits (68), Expect = 2.9
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEE-EEEKKKMMMMMKKIRRRPKEF 510
E EEEE E +++ + ++++ + + ++ EE E EEK++ K+ ++R KE
Sbjct: 147 EVLEEEELAELRQQQRQFEQRRNAELAETQRLEEAERRRREEKERRKKQDKERKQREKET 206
Query: 511 LHRI 514
+I
Sbjct: 207 AEKI 210
>gnl|CDD|233309 TIGR01200, GLPGLI, GLPGLI family protein. This protein family was
first noted as a paralogous set in Porphyromonas
gingivalis, but it is more widely distributed among the
Bacteroidetes. The protein family is now renamed GLPGLI
after its best-conserved motif.
Length = 227
Score = 29.6 bits (67), Expect = 2.9
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 467 EKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMM 498
E K KK K+ E+ ++ K+
Sbjct: 196 ELNPTPIIIIPKPKKGKKISREKFKKIKEKYY 227
>gnl|CDD|217451 pfam03249, TSA, Type specific antigen. There are several antigenic
variants in Rickettsia tsutsugamushi, and a
type-specific antigen (TSA) of 56-kilodaltons located on
the rickettsial surface is responsible for the
variation. TSA proteins are probably integral membrane
proteins.
Length = 502
Score = 30.2 bits (68), Expect = 2.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEE 486
++EE+ G + + +KK+ +K K+ K KE E
Sbjct: 367 AAQQEEDAGNQGGGDCKKKQGASEKSKEGGKGKETE 402
Score = 29.1 bits (65), Expect = 7.3
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEE 487
++EE+ + KKK+ +K K+ K +E E
Sbjct: 369 QQEEDAGNQGGGDCKKKQGASEKSKEGGKGKETE 402
>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein. This
protein is covalently attached to the terminii of
replicating DNA in vivo.
Length = 548
Score = 30.4 bits (69), Expect = 2.9
Identities = 22/50 (44%), Positives = 23/50 (46%), Gaps = 16/50 (32%)
Query: 443 RRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
RRR E EEEEE EEE E+E EEEEEEEE
Sbjct: 295 RRRPPPSPPEPEEEEEEEEEVPEEE----------------EEEEEEEER 328
>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed.
Length = 542
Score = 30.2 bits (69), Expect = 3.0
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 13/82 (15%)
Query: 409 RLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEK 468
RLR E E+A A + E E + EE EEEK +
Sbjct: 461 RLRPLLPEEELAEEEAAA-------------EEAALEEDEEAALEVELSDDEELEEEKAE 507
Query: 469 KKEKKKKKKKKKKKKEEEEEEE 490
++ K + K+ ++ +E+ EE
Sbjct: 508 EELKYEDLLKRLRELAKEDPEE 529
>gnl|CDD|100111 cd05833, Ribosomal_P2, Ribosomal protein P2. This subfamily
represents the eukaryotic large ribosomal protein P2.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P2 is located in the L12 stalk, with proteins
P1, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers). Bacteria may have four or six copies
of L7/L12 (two or three homodimers) depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plants have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site in the C-terminal region
of P2. TCS inactivates the ribosome by depurinating a
specific adenine in the sarcin-ricin loop of 28S rRNA.
Length = 109
Score = 28.4 bits (64), Expect = 3.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 474 KKKKKKKKKKEEEEEEEEE 492
KK++KKEE EEE ++
Sbjct: 83 AAAAKKEEKKEESEEESDD 101
Score = 27.6 bits (62), Expect = 6.3
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 446 GGGGGGEEEEEEEGEEEEEEKE 467
++EE +EE EE+
Sbjct: 78 AAAAAAAAAKKEEKKEESEEES 99
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 29.6 bits (66), Expect = 3.0
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
GG + + ++E+ K +E ++ K ++K+ +EE+EEEE
Sbjct: 187 GGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEV 229
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 30.5 bits (68), Expect = 3.0
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 175 QLELEHLEREKREREIRELRERELNDRIKEDLIKNASR 212
+LE E LER++ ER+ + ERE DR++ D ++ A R
Sbjct: 488 RLERERLERDRLERDRLDRLERERVDRLERDRLEKARR 525
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 30.1 bits (68), Expect = 3.1
Identities = 17/40 (42%), Positives = 28/40 (70%)
Query: 446 GGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEE 485
G GG +E++E+E +EE +E+ +KK+K KKK +K+K
Sbjct: 333 GYMGGIDEDDEDEDDEESKEEVEKKQKVKKKPRKRKVNPV 372
>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2. Transcripts
harbouring premature signals for translation termination
are recognised and rapidly degraded by eukaryotic cells
through a pathway known as nonsense-mediated mRNA decay.
In Saccharomyces cerevisiae, three trans-acting factors
(Upf1 to Upf3) are required for nonsense-mediated mRNA
decay.
Length = 171
Score = 29.3 bits (66), Expect = 3.1
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
EE + + E++EE ++++ +++++ E E E + E +KMM
Sbjct: 28 EEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEAEFDREFEKMM 74
>gnl|CDD|163064 TIGR02894, DNA_bind_RsfA, transcription factor, RsfA family. In a
subset of endospore-forming members of the Firmcutes,
members of this protein family are found, several to a
genome. Two very strongly conserved sequences regions
are separated by a highly variable linker region. Much
of the linker region was excised from the seed alignment
for this model. A characterized member is the
prespore-specific transcription RsfA from Bacillus
subtilis, previously called YwfN, which is controlled by
sigma factor F and seems to fine-tune expression of some
genes in the sigma-F regulon. A paralog in Bacillus
subtilis is designated YlbO [Regulatory functions, DNA
interactions, Cellular processes, Sporulation and
germination].
Length = 161
Score = 29.3 bits (66), Expect = 3.1
Identities = 17/103 (16%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 404 RKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEE-E 462
RK+ E + A+++R+E ++ S+ + I + ++ ++E E +
Sbjct: 56 RKQYEEAIELAKKQRKELKREAGSLTL-----QDVISFLQNLKTTNPSDQALQKENERLK 110
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRR 505
+ + +K ++ +K+ +K ++ EE+ + ++ +M + R+
Sbjct: 111 NQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK 153
>gnl|CDD|222259 pfam13608, Potyvirid-P3, Protein P3 of Potyviral polyprotein. This
is the P3 protein section of the Potyviridae
polyproteins. The function is not known except that the
protein is essential to viral survival.
Length = 445
Score = 30.2 bits (69), Expect = 3.1
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 472 KKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPK--EFLHRI 514
+ +K K++ +E+EE+EE+E +K+ + K + P EFL I
Sbjct: 270 NEHRKLKREAAEEKEEKEEKEIRKLYLYSKLEGKLPTEEEFLEYI 314
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 29.7 bits (67), Expect = 3.1
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 452 EEEEEEEGEEEEEEK------EKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
E E E E +E E K + K K K K KK EE+ + E K
Sbjct: 75 EPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKP 123
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT
(nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
phosphoribosyltransferase) [Coenzyme metabolism].
Length = 620
Score = 30.2 bits (68), Expect = 3.2
Identities = 11/50 (22%), Positives = 23/50 (46%)
Query: 448 GGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
G E E +E EE+E E + ++ + + ++ E +E +E +
Sbjct: 249 AGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTETP 298
>gnl|CDD|222649 pfam14284, PcfJ, PcfJ-like protein. The PcfJ-like protein family
includes the E. faecalis PcfJ protein, which is
functionally uncharacterized. It is found in bacteria
and viruses, and is typically between 159 and 170 amino
acids in length. There is a conserved HCV sequence
motif.
Length = 169
Score = 29.2 bits (66), Expect = 3.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ + + + KKEK+K +K +K+ E E+ E K K
Sbjct: 28 KAAHDRAVAKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
>gnl|CDD|218455 pfam05133, Phage_prot_Gp6, Phage portal protein, SPP1 Gp6-like.
This protein forms a hole, or portal, that enables DNA
passage during packaging and ejection. It also forms the
junction between the phage head (capsid) and the tail
proteins. During SPP1 morphogenesis, Gp6 participates in
the procapsid assembly reaction. This family also
includes the old Pfam family Phage_min_cap (PF05126).
Length = 435
Score = 30.0 bits (68), Expect = 3.3
Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 20/107 (18%)
Query: 350 SKLARKREERLRKQAELKIKLFCPVFLRHWNRGDYNSCCRTDLTFKP-VPDSKLAR---- 404
S L K E + ++ ++ + L D ++TF +P + +
Sbjct: 330 SLLDLKAERK-ERKFGEALRRLLRLALEILGDKDKALFDDIEVTFTDNLPQNIAEQADAL 388
Query: 405 ---------KREERLRK-----QAEREREEREKAQASMCNLLSRNPE 437
RE L + E E E EK Q+ + +LL
Sbjct: 389 AKLKLAGIISRETALSRLPGVDDVEEELERIEKEQSELNDLLDDIEN 435
>gnl|CDD|235130 PRK03557, PRK03557, zinc transporter ZitB; Provisional.
Length = 312
Score = 29.7 bits (67), Expect = 3.3
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 93 HGPQSHSHHHQHSHHHHH 110
HGP H + H HHH
Sbjct: 295 HGPDCHLNQGVSGHSHHH 312
>gnl|CDD|213527 TIGR00390, hslU, ATP-dependent protease HslVU, ATPase subunit.
This model represents the ATPase subunit of HslVU, while
the proteasome-related peptidase subunit is HslV.
Residues 54-61 of the model contain a P-loop ATP-binding
motif. Cys-287 of E. coli (position 308 in the seed
alignment), studied in MEDLINE:98389714, is Ser in other
members of the seed alignment [Protein fate, Protein
folding and stabilization].
Length = 441
Score = 29.8 bits (67), Expect = 3.3
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIR 504
+EE E+ + EE+ +++ K + EE +EE+ KK+R
Sbjct: 109 KEEMIEKVRDRAEERAEERIVDSLLPPAKNQWGNMEEIQEEESVREAFRKKLR 161
>gnl|CDD|217145 pfam02616, ScpA_ScpB, ScpA/B protein. ScpA and ScpB participate in
chromosomal partition during cell division. It may act
via the formation of a condensin-like complex containing
smc that pull DNA away from mid-cell into both cell
halves. These proteins are part of the Kleisin
superfamily.
Length = 177
Score = 29.3 bits (66), Expect = 3.3
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFL 511
EE E E + K K+K+K + +KK E E E ++ + ++ + R KE L
Sbjct: 74 EELVEVEKSVLDLIHAFNKLVKRKRKNRLRKKNETELEVSVEEVLEELLAFLGVRLKEVL 133
Query: 512 H 512
Sbjct: 134 T 134
>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED.
Length = 590
Score = 30.1 bits (68), Expect = 3.4
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 96 QSHSHHHQHSHHHHHQTATASPPASAISGSKSRGIGDPIPNHILLSEHKPRPSESQSSSS 155
S S+ S H ++++S +S S + R H P SS
Sbjct: 1 SSSSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPR--RRKPSASSLLHTPSILPLPKLSS 58
Query: 156 AQPPSSSPD 164
PPS +
Sbjct: 59 PSPPSVTLP 67
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 30.0 bits (68), Expect = 3.4
Identities = 9/63 (14%), Positives = 25/63 (39%), Gaps = 15/63 (23%)
Query: 443 RRRGGGGGGEEEEEEEGEEEEEEKE---------------KKKEKKKKKKKKKKKKEEEE 487
EE +EE+ E + E + ++ ++++++++ ++K E
Sbjct: 122 DLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEKRAEL 181
Query: 488 EEE 490
E
Sbjct: 182 EFY 184
Score = 29.6 bits (67), Expect = 4.9
Identities = 7/41 (17%), Positives = 28/41 (68%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
E++E++ ++++++ +E+ ++++++++ EE+ E E
Sbjct: 143 SEDDEDDDDDDDDDDIATRERSLERRRRRREWEEKRAELEF 183
Score = 28.8 bits (65), Expect = 8.0
Identities = 11/56 (19%), Positives = 28/56 (50%), Gaps = 13/56 (23%)
Query: 449 GGGEEEEEEEGEEEEEEKEKKKE-------------KKKKKKKKKKKKEEEEEEEE 491
+++EE + E+EE K + E +++ +++++++E EE+ E
Sbjct: 125 EDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEKRAE 180
>gnl|CDD|238501 cd01019, ZnuA, Zinc binding protein ZnuA. These proteins have been
shown to function as initial receptors in the ABC uptake
of Zn2+. They belong to the TroA superfamily of
periplasmic metal binding proteins that share a distinct
fold and ligand binding mechanism. They are comprised
of two globular subdomains connected by a single helix
and bind their specific ligands in the cleft between
these domains. A typical TroA protein is comprised of
two globular subdomains connected by a single helix and
can bind the metal ion in the cleft between these
domains. In addition, these proteins sometimes have a
low complexity region containing a metal-binding
histidine-rich motif (repetitive HDH sequence).
Length = 286
Score = 29.6 bits (67), Expect = 3.4
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 93 HGPQSHSHHHQHSHHHHHQ 111
HG H H H H H H+
Sbjct: 97 HGDHEHDHEHAHGEHDGHE 115
>gnl|CDD|234623 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl diphosphate
reductase/S1 RNA-binding domain protein; Reviewed.
Length = 647
Score = 29.9 bits (68), Expect = 3.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 472 KKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRR 505
++ KK + EE EE E+ + M + K+IRR
Sbjct: 269 EEVIKKMSELDNMEEVEENEQLEYMNELEKQIRR 302
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2. PPP4R2 (protein phosphatase 4 core
regulatory subunit R2) is the regulatory subunit of the
histone H2A phosphatase complex. It has been shown to
confer resistance to the anticancer drug cisplatin in
yeast, and may confer resistance in higher eukaryotes.
Length = 285
Score = 29.8 bits (67), Expect = 3.5
Identities = 12/37 (32%), Positives = 26/37 (70%)
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
+ ++EE+ ++ + ++K+ K+ ++EEE EEEEE+
Sbjct: 244 NKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEE 280
>gnl|CDD|205480 pfam13300, DUF4078, Domain of unknown function (DUF4078). This
family is found from fungi to humans, but its exact
function is not known.
Length = 88
Score = 28.0 bits (63), Expect = 3.6
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEE 487
E+ EE E E +E+E++KEK+K+ ++++KK EE
Sbjct: 53 EKAREETERERKEREERKEKRKRAIEERRKKIEER 87
Score = 27.2 bits (61), Expect = 6.9
Identities = 13/42 (30%), Positives = 32/42 (76%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+EEE E+ EE ++ ++E ++++K+++++KE+ + EE++K
Sbjct: 41 DEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRK 82
>gnl|CDD|225381 COG2825, HlpA, Outer membrane protein [Cell envelope biogenesis,
outer membrane].
Length = 170
Score = 28.9 bits (65), Expect = 3.6
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
+ + E E KKEK KK+++ E++ E ++ +++KI+R +
Sbjct: 85 DRAKAEAEIKKEKLVNAFNKKQQEYEKDLNRREAEEEQKLLEKIQRAIESV 135
Score = 28.9 bits (65), Expect = 4.8
Identities = 10/47 (21%), Positives = 25/47 (53%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
++ + + KK++K+ +K ++E + +E K + M+ + R K
Sbjct: 43 KKVSADLESEFKKRQKELQKMQKELKAKEAKLQDDGKMEALSDRAKA 89
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 29.4 bits (66), Expect = 3.7
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 466 KEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
K+K +KKK KK KKK++E+EE E
Sbjct: 53 KKKTTPRKKKTTKKTKKKKKEKEEVPEL 80
Score = 28.2 bits (63), Expect = 7.9
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKK------KKKKKEEEEEEEEEKK 494
++ E E +K KK+K +KK KKKKKE+EE E +
Sbjct: 35 NDDIFPEDVEIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAE 83
>gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase.
Length = 530
Score = 30.1 bits (68), Expect = 3.7
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEE 488
+E EE EK KK KK K +K + E
Sbjct: 1 SSQEAVEESGEKISKKAAKKAAAKAEKLRREATA 34
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 30.0 bits (68), Expect = 3.7
Identities = 14/60 (23%), Positives = 23/60 (38%)
Query: 437 ERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
E R EE EE+K K+E K + + ++ +EE + E K +
Sbjct: 815 EEERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINENKNEF 874
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 29.7 bits (67), Expect = 3.7
Identities = 13/59 (22%), Positives = 26/59 (44%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPK 508
E + EE E++ +K ++K K K K E +++E + + KK + +
Sbjct: 333 FSGEPDGISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERR 391
Score = 29.3 bits (66), Expect = 5.3
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
E +K+++ + ++KKK+KK K E +
Sbjct: 366 PERDKKERPGRYRRKKKEKKAKSERRGLQN 395
>gnl|CDD|145707 pfam02697, DUF217, Uncharacterized ACR, COG1753. Structural
modelling suggests this domain may bind nucleic acids.
Length = 71
Score = 27.4 bits (61), Expect = 3.7
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 15/59 (25%)
Query: 463 EEEKEKKKEKK----------KKKKKKKKKKE-----EEEEEEEEKKKMMMMMKKIRRR 506
E+ + K+ K +KK ++K + EEE +E +K++ + KK R R
Sbjct: 12 EKLLKLKRGGKSFSEVIRELIEKKGNRRKLMDYFGILSEEEADELEKELKEVRKKFRER 70
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 29.7 bits (67), Expect = 3.7
Identities = 17/101 (16%), Positives = 39/101 (38%), Gaps = 5/101 (4%)
Query: 399 DSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGE---EEE 455
+ L+ +R ++ + + EER+K A + + LS + ++++ R E E
Sbjct: 188 TTLLSEQRAQQ--AKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEA 245
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
E + + + + K+ E + EK +
Sbjct: 246 AAAKAREAAAAAEAAAARARAAEAKRTGETYKPTAPEKMLI 286
Score = 28.9 bits (65), Expect = 6.8
Identities = 9/44 (20%), Positives = 20/44 (45%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E+ E E+ ++ K + +++KK + E ++KK
Sbjct: 183 EQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKL 226
>gnl|CDD|222948 PHA02941, PHA02941, hypothetical protein; Provisional.
Length = 356
Score = 29.6 bits (66), Expect = 3.8
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 8/43 (18%)
Query: 459 GEEEEEEKEKKKEK--------KKKKKKKKKKKEEEEEEEEEK 493
G EE+E K++ +E+ ++ ++ ++++EEEE EEEE+
Sbjct: 307 GGEEKEPKQESQEQLFNPFAIDEEMLEETQEQQEEEENEEEEE 349
>gnl|CDD|185749 cd09236, V_AnPalA_UmRIM20_like, Protein-interacting V-domains of
Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20,
and related proteins. This family belongs to the
V_Alix_like superfamily which includes the V-shaped (V)
domains of Bro1 and Rim20 from Saccharomyces cerevisiae,
mammalian Alix (apoptosis-linked gene-2 interacting
protein X), His-Domain type N23 protein tyrosine
phosphatase (HD-PTP, also known as PTPN23), and related
domains. Aspergillus nidulas PalA/RIM20 and Ustilago
maydis RIM20, like Saccharomyces cerevisiae Rim20,
participate in the response to the external pH via the
Pal/Rim101 pathway; however, Saccharomyces cerevisiae
Rim20 does not belong to this family. This pathway is a
signaling cascade resulting in the activation of the
transcription factor PacC/Rim101. The mammalian Alix
V-domain (belonging to a different family) contains a
binding site, partially conserved in the superfamily,
for the retroviral late assembly (L) domain YPXnL motif.
Aspergillus nidulas PalA binds a nonviral YPXnL motif
(tandem YPXL/I motifs within PacC). The Alix V-domain is
also a dimerization domain. In addition to this
V-domain, members of the V_Alix_like superfamily also
have an N-terminal Bro1-like domain, which has been
shown to bind CHMP4/Snf7, a component of the ESCRT-III
complex.
Length = 353
Score = 29.6 bits (67), Expect = 3.8
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 152 SSSSAQPPSSSPDCHSLPACLCYQLELEHLEREKREREIRELRERELNDRIKEDLIKNAS 211
S + PP +L L EL+ LE +R R++ R + D I+ ++++ A+
Sbjct: 181 SRRPSIPPELERHVRALRVSLE---ELDRLES-RRRRKVERARTKARADDIRPEILREAA 236
Query: 212 R 212
R
Sbjct: 237 R 237
>gnl|CDD|215565 PLN03083, PLN03083, E3 UFM1-protein ligase 1 homolog; Provisional.
Length = 803
Score = 29.8 bits (67), Expect = 3.8
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 443 RRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
+++G + E ++EE+ KK +K +KK + K K + + KK
Sbjct: 422 KKKGKSTSTKGGTAESIPDDEEDAPKKGKKNQKKGRDKSSKVPSDSKAGGKK 473
Score = 29.0 bits (65), Expect = 8.0
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 443 RRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+++ G + E ++EE KK KK +KK + K + + + KK
Sbjct: 421 KKKKGKSTSTKGGTAESIPDDEEDAPKKGKKNQKKGRDKSSKVPSDSKAGGKK 473
>gnl|CDD|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional.
Length = 393
Score = 29.6 bits (67), Expect = 3.8
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 407 EERLRKQAEREREEREK-AQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEE 465
EER+ K ER ++ + K Q + + + + I + +++ + E
Sbjct: 320 EERVEKYIERLKKAKTKKTQTRLDSFFTATKKPIKKSNSKAKLKKKKKKAGASAVPKSET 379
Query: 466 KEKKKEKKKKKKKK 479
++ K KKK KK
Sbjct: 380 SQEAKSSGKKKVKK 393
>gnl|CDD|239167 cd02766, MopB_3, The MopB_3 CD includes a group of related
uncharacterized bacterial and archaeal
molybdopterin-binding oxidoreductase-like domains with a
putative N-terminal iron-sulfur [4Fe-4S] cluster binding
site and molybdopterin cofactor binding site. These
members belong to the molybdopterin_binding (MopB)
superfamily of proteins.
Length = 501
Score = 29.9 bits (68), Expect = 3.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 436 PERIDTPRRRGGGGGGEEEE 455
P+R+ TP +R G GG+ E
Sbjct: 53 PDRLLTPLKRVGRKGGQWER 72
>gnl|CDD|217011 pfam02388, FemAB, FemAB family. The femAB operon codes for two
nearly identical approximately 50-kDa proteins involved
in the formation of the Staphylococcal pentaglycine
interpeptide bridge in peptidoglycan. These proteins are
also considered as a factor influencing the level of
methicillin resistance.
Length = 408
Score = 29.9 bits (68), Expect = 3.8
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+E+ E+ E++ + E+K EK KKK K E E++ +K+
Sbjct: 248 QEKLEKLEKDLAKLEEKLEKNPNSKKKNKLAELEQQLASLEKR 290
>gnl|CDD|239571 cd03489, Topoisomer_IB_N_LdtopoI_like,
Topoisomer_IB_N_LdtopoI_like: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the heterodimeric topo I from
Leishmania donvanni. Topo I enzymes are divided into:
topo type IA (bacterial) and type IB (eukaryotic). Topo
I relaxes superhelical tension in duplex DNA by creating
a single-strand nick, the broken strand can then rotate
around the unbroken strand to remove DNA supercoils and,
the nick is religated, liberating topo I. These enzymes
regulate the topological changes that accompany DNA
replication, transcription and other nuclear processes.
Human topo I is the target of a diverse set of
anticancer drugs including camptothecins (CPTs). CPTs
bind to the topo I-DNA complex and inhibit re-ligation
of the single-strand nick, resulting in the accumulation
of topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topo I play putative roles in
organizing the kinetoplast DNA network unique to these
parasites. This family may represent more than one
structural domain.
Length = 212
Score = 29.5 bits (66), Expect = 3.9
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEE 489
EKEKKK + K++KK K+++++E E
Sbjct: 93 REKEKKKSRTKEEKKALKEEKDKEAE 118
>gnl|CDD|235302 PRK04456, PRK04456, acetyl-CoA decarbonylase/synthase complex
subunit beta; Reviewed.
Length = 463
Score = 29.7 bits (67), Expect = 4.0
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 451 GEEEEEEEGEEEEEEKEKKKE 471
EEEEEE EEEEEE+E E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAE 423
>gnl|CDD|234635 PRK00104, scpA, segregation and condensation protein A; Reviewed.
Length = 242
Score = 29.4 bits (67), Expect = 4.0
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE--EKKKM 496
EE EEEE + +E EK E KK K+ ++ KE+EEE + K
Sbjct: 78 EEFEEEEEDPRQELLEKLIEYKKFKEAAEELKEQEEERAQYFSKPPS 124
>gnl|CDD|222855 PHA02529, O, capsid-scaffolding protein; Provisional.
Length = 278
Score = 29.3 bits (66), Expect = 4.1
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
E EE E E E +K KK +KKE++ +E+ +
Sbjct: 156 SVACEAKEEFEPEAELAALFEKVKKLFSRKKEDDAMTDEQFADVH 200
>gnl|CDD|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777). This is
a family of eukaryotic proteins of unknown function.
Some of the proteins in this family are putative nucleic
acid binding proteins.
Length = 158
Score = 28.7 bits (64), Expect = 4.1
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 404 RKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEE 463
R+R + ER+R R ++++ + SR+P R + R + +
Sbjct: 24 RERRRERSRSRERDRRRRSRSRSPHRSRRSRSPRRHRSRSR---------SPSRRRDRKR 74
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMM 500
E + +E KK++++K K+E+ E + +E+ +MM MM
Sbjct: 75 ERDKDAREPKKRERQKLIKEEDLEGKSDEEVEMMKMM 111
>gnl|CDD|227935 COG5648, NHP6B, Chromatin-associated proteins containing the HMG
domain [Chromatin structure and dynamics].
Length = 211
Score = 29.1 bits (65), Expect = 4.1
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
EE + + E E KK+K K KK K++ + E
Sbjct: 170 ALVEETKIISKAWSELDESKKKKYIDKYKKLKEEYDSFYPEA 211
>gnl|CDD|185618 PTZ00438, PTZ00438, gamete antigen 27/25-like protein; Provisional.
Length = 374
Score = 29.6 bits (66), Expect = 4.2
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 430 NLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEE 489
N++ +N E RG EE+E+ E EE EE E +E+ + +K E+E +
Sbjct: 94 NIIVKNEEE------RGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDA 147
Query: 490 EEEKKKM 496
E ++ ++
Sbjct: 148 EGDENEL 154
>gnl|CDD|221820 pfam12870, Lumazine_bd, Lumazine-binding domain. This is a family
of putative lipoproteins from bacteria. Many members of
the family are defined as having a lumazine-binding
domain. Lumazine is a fluorescent accessory protein
having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as
its authentic chromophore; it modulates the emission of
bacterial luciferase to shorter wavelengths with
increasing luminous strength. The family is related to
the NTF2-like transpeptidase family.
Length = 108
Score = 28.2 bits (63), Expect = 4.2
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
E+ ++ +E+ K K + K K +KK + E EE++
Sbjct: 33 EDRSPDKLKEQFAGKVKMMVDEMKAKIEKKGGVKIIEVEEKE 74
>gnl|CDD|219789 pfam08315, cwf18, cwf18 pre-mRNA splicing factor. The cwf18 family
is involved in mRNA splicing. It has been isolated as a
subcomplex of the splicosome in Schizosaccharomyces
pombe.
Length = 125
Score = 28.4 bits (64), Expect = 4.2
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EEE K++ K + K+++K++ E EE++
Sbjct: 4 EEEALARKERLAKLRSKEEEKEENGEGEEKDVTHP 38
>gnl|CDD|227674 COG5384, Mpp10, U3 small nucleolar ribonucleoprotein component
[Translation, ribosomal structure and biogenesis].
Length = 569
Score = 29.7 bits (66), Expect = 4.2
Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 12/114 (10%)
Query: 398 PDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEE 457
+K K+ ++ E E + E+ ++M ++D E+E
Sbjct: 216 KPTKEPVKKHSDVKDPKEDEELDEEEHDSAMDK------VKLDLFADE------EDEPNA 263
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFL 511
EG E +K +K++ + ++ +E E+E K+ ++RPK L
Sbjct: 264 EGVGEASDKNLSSFEKQQIEMDEQIEELEKELVAPKEWKYAGEVSAKKRPKNSL 317
>gnl|CDD|220611 pfam10169, Laps, Learning-associated protein. This is a family of
121-amino acid secretory proteins. Laps functions in the
regulation of neuronal cell adhesion and/or movement and
synapse attachment. Laps binds to the ApC/EBP (Aplysia
CCAAT/enhancer binding protein) promoter and activates
the transcription of ApC/EBP mRNA.
Length = 124
Score = 28.3 bits (63), Expect = 4.3
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
+ ++ K+ K ++ K+KKKKE E EE+++K
Sbjct: 35 DGNVLMKDVKDIATVKPAEEVKEKKKKEGTESEEDDEK 72
Score = 27.9 bits (62), Expect = 7.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
+G ++ + K ++ K+KKK+E E EE+ +KM
Sbjct: 35 DGNVLMKDVKDIATVKPAEEVKEKKKKEGTESEEDDEKM 73
>gnl|CDD|217940 pfam04177, TAP42, TAP42-like family. The TOR signalling pathway
activates a cell-growth program in response to
nutrients. TIP41 (pfam04176) interacts with TAP42 and
negatively regulates the TOR signaling pathway.
Length = 335
Score = 29.6 bits (67), Expect = 4.3
Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
E+E + G + E ++++ + EE+++EE K +
Sbjct: 285 EQEMKRGGVPQGGGEAAAS--AEEEEDDEDDEEDDDEETLKARAW 327
Score = 28.4 bits (64), Expect = 8.3
Identities = 9/47 (19%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEE---EEKKKMMMM 499
+E E+E + + + ++++++E++EE EE K
Sbjct: 281 DEYLEQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLKARAW 327
>gnl|CDD|221550 pfam12366, Casc1, Cancer susceptibility candidate 1. This domain
family is found in eukaryotes, and is typically between
216 and 263 amino acids in length. Casc1 has many SNPs
associated with cancer susceptibility.
Length = 227
Score = 29.3 bits (66), Expect = 4.3
Identities = 9/51 (17%), Positives = 16/51 (31%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKI 503
E + EE E + K+ K K + E + K + +
Sbjct: 62 VRYELYISKIAEEAEGARGYVTDIPKEYKAKPVKYLEIPKPIKDPPELPEG 112
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 30.0 bits (67), Expect = 4.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
E++ E+ E KE K + K ++E+E+EEE
Sbjct: 3920 EQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMS 3960
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 29.8 bits (68), Expect = 4.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKK 475
E EE E EE+E+KKE+KK
Sbjct: 67 RERLEELAPELLEEEEEKKEEKKG 90
>gnl|CDD|189037 cd09867, PIN_FEN1, PIN domain of Flap Endonuclease-1, a
structure-specific, divalent-metal-ion dependent, 5'
nuclease and homologs. Flap endonuclease-1 (FEN1) is
involved in multiple DNA metabolic pathways, including
DNA replication processes (5' flap DNA endonuclease
activity and double stranded DNA 5'-exonuclease
activity) and DNA repair processes (long-patch base
excision repair) in eukaryotes and archaea. Interaction
between FEN1 and PCNA (Proliferating cell nuclear
antigen) is an essential prerequisite to FEN1's DNA
replication functionality and stimulates FEN1 nuclease
activity by 10-50 fold. FEN1 belongs to the
FEN1-EXO1-like family of structure-specific, 5'
nucleases. These nucleases contain a PIN (PilT N
terminus) domain with a helical arch/clamp region (I
domain) of variable length (approximately 45 residues in
FEN1 PIN domains) and a H3TH (helix-3-turn-helix)
domain, an atypical helix-hairpin-helix-2-like region.
Both the H3TH domain (not included here) and the helical
arch/clamp region are involved in DNA binding. Nucleases
within this group also have a carboxylate-rich active
site that is involved in binding essential divalent
metal ion cofactors (Mg2+/Mn2+). FEN1 has a C-terminal
extension containing residues forming the consensus
PIP-box - Qxx(M/L/I)xxF(Y/F) which serves to anchor FEN1
to PCNA.
Length = 261
Score = 29.4 bits (67), Expect = 4.6
Identities = 10/38 (26%), Positives = 25/38 (65%)
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMK 501
E EK++E++++ ++K ++ +EE + EE +K ++
Sbjct: 90 GELEKRRERREEAEEKLEEAKEEGDAEEARKYAKRTVR 127
>gnl|CDD|116948 pfam08367, M16C_assoc, Peptidase M16C associated. This domain
appears in eukaryotes as well as bacteria and tends to
be found near the C-terminus of the metalloprotease M16C
(pfam05193).
Length = 248
Score = 29.1 bits (66), Expect = 4.6
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+E EEK ++E++K +KKK EE++E+ E+
Sbjct: 3 PDETLEEKLNEEEREKLEKKKSSLSEEDKEKIIERGL 39
>gnl|CDD|236153 PRK08116, PRK08116, hypothetical protein; Validated.
Length = 268
Score = 29.2 bits (66), Expect = 4.6
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKK-----KKKKKK-----KKKKEEEEEEEEEKKKMMMMMK 501
E + EE+G E E K+ EK K + +++ EE +E EEE ++ ++
Sbjct: 8 EADSEEDGGEYCEVCGKRIEKVVELLGKNRIVPIMCECEREAEEAKEREEENREKQRRIE 67
Query: 502 KIRRR 506
+++
Sbjct: 68 RLKSN 72
>gnl|CDD|234029 TIGR02830, spore_III_AG, stage III sporulation protein AG. CC A
comparative genome analysis of all sequenced genomes of
shows a number of proteins conserved strictly among the
endospore-forming subset of the Firmicutes. This
protein, a member of this panel, is found in a spore
formation operon and is designated stage III sporulation
protein AG [Cellular processes, Sporulation and
germination].
Length = 186
Score = 28.9 bits (65), Expect = 4.6
Identities = 10/45 (22%), Positives = 25/45 (55%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
E+ EE + EK + + + + +K+ + + E++ E E K+++
Sbjct: 26 SEDIEESDTPNNEKTEPEFVQGEVQKEDEISDYEKQYENELKEIL 70
>gnl|CDD|214697 smart00498, FH2, Formin Homology 2 Domain. FH proteins control
rearrangements of the actin cytoskeleton, especially in
the context of cytokinesis and cell polarisation.
Members of this family have been found to interact with
Rho-GTPases, profilin and other actin-assoziated
proteins. These interactions are mediated by the
proline-rich FH1 domain, usually located in front of FH2
(but not listed in SMART). Despite this cytosolic
function, vertebrate formins have been assigned
functions within the nucleus. A set of Formin-Binding
Proteins (FBPs) has been shown to bind FH1 with their WW
domain.
Length = 392
Score = 29.2 bits (66), Expect = 4.7
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKK------KKKKKKKKEEEEEEEEEKKKMMM 498
+ EE +EEEEE+ +KK K+ ++K++ + E E ++
Sbjct: 332 KAAEENIKKEEEEEERRKKLVKETTEYEQSSSRQKERNPSMDFEVERDFLGVL 384
>gnl|CDD|226341 COG3820, COG3820, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 230
Score = 29.1 bits (65), Expect = 4.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
E E+ + EE EEE+E + K K ++EE+E+
Sbjct: 191 ETEQLDYEEEREEERELDADAVFAKLSSLKSGNKDEEDED 230
>gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisation of
microtubules varies with the cell type and is presumably
controlled by tissue-specific microtubule-associated
proteins (MAPs). The 115-kDa epithelial MAP
(E-MAP-115/MAP7) has been identified as a
microtubule-stabilising protein predominantly expressed
in cell lines of epithelial origin. The binding of this
microtubule associated protein is nucleotide
independent.
Length = 171
Score = 28.9 bits (64), Expect = 4.9
Identities = 26/104 (25%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 402 LARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEE 461
R EERLR++ E R+E E+A+ + E + E+E ++ +E
Sbjct: 61 KRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQE-------EQERIQKQKE 113
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRR 505
E E + +++ ++ + +++K ++ E+E E KK++ +MK+ R+
Sbjct: 114 EAEARAREEAERMRLEREKHFQQIEQERLERKKRLEEIMKRTRK 157
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 29.5 bits (66), Expect = 4.9
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 408 ERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKE 467
ERL + +ER+ + + L S+N E + + E +E ++EEE
Sbjct: 32 ERLDSELRDAEKERDTYKQYLSKLESQNVEISNYEAL--------DSELDELKKEEERLL 83
Query: 468 KKKEKKKKKKKKKKKKEEEEEEEEEK 493
+ E+ +K+ + E +EE+E+
Sbjct: 84 DELEELEKEDDDLDGELVELQEEKEQ 109
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 29.4 bits (66), Expect = 4.9
Identities = 14/105 (13%), Positives = 38/105 (36%)
Query: 399 DSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEE 458
+ + E + E E ER + A + + E+++ R E + E
Sbjct: 362 AEAIGAQAEAAVETARETEEAERAEQAALVAAAEAAEQEQVEIAVRAEAAKAEAEAQAAE 421
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKI 503
+ E E +K + + + K+ + + + + +++ +
Sbjct: 422 IKAEAEAIREKGKAEAEAKRALAEAIQVLGDAAAAELFKALVQAL 466
Score = 29.4 bits (66), Expect = 5.5
Identities = 14/102 (13%), Positives = 35/102 (34%), Gaps = 4/102 (3%)
Query: 398 PDSKLARKRE---ERLRKQAE-REREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEE 453
+ RE +AE + + +A +L+ + + + +
Sbjct: 257 AGKTAEQTREVKIILAETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKA 316
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E E E++K+ E + +++ + + +EE K
Sbjct: 317 LEAREMRVGLIERQKETELEPQERSYFINAAQRQAQEEAKAA 358
>gnl|CDD|191634 pfam06886, TPX2, Targeting protein for Xklp2 (TPX2). This family
represents a conserved region approximately 60 residues
long within the eukaryotic targeting protein for Xklp2
(TPX2). Xklp2 is a kinesin-like protein localised on
centrosomes throughout the cell cycle and on spindle
pole microtubules during metaphase. In Xenopus, it has
been shown that Xklp2 protein is required for centrosome
separation and maintenance of spindle bi-polarity. TPX2
is a microtubule-associated protein that mediates the
binding of the C-terminal domain of Xklp2 to
microtubules. It is phosphorylated during mitosis in a
microtubule-dependent way.
Length = 57
Score = 26.6 bits (59), Expect = 4.9
Identities = 15/44 (34%), Positives = 32/44 (72%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
E+ E +++ EEKEK E +K++ + ++K+EEEE ++ +K+++
Sbjct: 8 EKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEAIKQLRKELV 51
>gnl|CDD|227818 COG5531, COG5531, SWIB-domain-containing proteins implicated in
chromatin remodeling [Chromatin structure and dynamics].
Length = 237
Score = 28.9 bits (65), Expect = 4.9
Identities = 16/74 (21%), Positives = 27/74 (36%)
Query: 420 EREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKK 479
R+K + E+ + R+ G +EE+ +E + E K+ KKK
Sbjct: 51 IRDKFDSLAEEPRVLRKEKYNITRKTTGKNDLPKEEDSSLPSSKETENGDTEGKETDKKK 110
Query: 480 KKKKEEEEEEEEEK 493
K + EK
Sbjct: 111 KSSTISKNSPSGEK 124
>gnl|CDD|191675 pfam07047, OPA3, Optic atrophy 3 protein (OPA3). This family
consists of several optic atrophy 3 (OPA3) proteins.
OPA3 deficiency causes type III 3-methylglutaconic
aciduria (MGA) in humans. This disease manifests with
early bilateral optic atrophy, spasticity,
extrapyramidal dysfunction, ataxia, and cognitive
deficits, but normal longevity.
Length = 134
Score = 28.4 bits (64), Expect = 5.0
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
KE KKE++ +++ ++ + E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIER 130
>gnl|CDD|219038 pfam06459, RR_TM4-6, Ryanodine Receptor TM 4-6. This region covers
TM regions 4-6 of the ryanodine receptor 1 family.
Length = 217
Score = 28.9 bits (65), Expect = 5.0
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 447 GGGGGEEEEEEEGEEEEEEK-EKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMM 498
G G E E E E +K+E K++ ++ K + E+ + E+ EK+ ++
Sbjct: 65 PGLGDMSEVEPEEPPTPEGAPAEKRELKEEGEEPKSEPEKADLEDGEKRTKIL 117
>gnl|CDD|214818 smart00784, SPT2, SPT2 chromatin protein. This entry includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 106
Score = 27.7 bits (62), Expect = 5.0
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKK 474
E+ EEE E+EEE+EK+ K+K
Sbjct: 84 LEDREEERLEKEEEREKRARKRK 106
Score = 27.3 bits (61), Expect = 6.8
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKK 478
E+ EEE EKE+++EK+ +K+K
Sbjct: 83 RLEDREEERLEKEEEREKRARKRK 106
Score = 27.0 bits (60), Expect = 9.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKK 475
E+ EE E+EE+ +K+ +K+K
Sbjct: 82 ARLEDREEERLEKEEEREKRARKRK 106
>gnl|CDD|151173 pfam10669, Phage_Gp23, Protein gp23 (Bacteriophage A118). This is
the highly conserved family of the major tail subunit
protein.
Length = 121
Score = 28.2 bits (62), Expect = 5.0
Identities = 13/49 (26%), Positives = 29/49 (59%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKK 502
E +EE ++ E E+EK+ ++ K+++ K E++ +K+ MM ++
Sbjct: 47 EMKEERDKMETEREKRDKESKEERDKFISTMNEQQRLMDKQNDMMGQQQ 95
>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200). This
family is found in eukaryotes. It is a coiled-coil
domain of unknwon function.
Length = 126
Score = 28.0 bits (63), Expect = 5.1
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKK--KKKKKKKKEEEEEEEEEKKKMMMMMKKIRR 505
++ EEE E++EEE ++ K K K+ + K++ E++ EEEKK ++I+
Sbjct: 31 KQREEELEKKEEELQESLIKFDKFLKENEAKRRRAEKKAEEEKKLRKEKEEEIKE 85
>gnl|CDD|235219 PRK04098, PRK04098, sec-independent translocase; Provisional.
Length = 158
Score = 28.5 bits (64), Expect = 5.1
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEE 488
EE E +E ++ ++ K K K KK ++E+
Sbjct: 122 EEVSNETKLTQESSSDESPKEVKLATKNKTKKHDKEK 158
>gnl|CDD|220710 pfam10351, Apt1, Golgi-body localisation protein domain. This is
the C-terminus of a family of proteins conserved from
plants to humans. The plant members are localised to the
Golgi proteins and appear to regulate membrane
trafficking, as they are required for rapid vesicle
accumulation at the tip of the pollen tube. The
C-terminus probably contains the Golgi localisation
signal and it is well-conserved.
Length = 451
Score = 29.6 bits (67), Expect = 5.1
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
+ + +EK K+ E E + ++ ++MK I
Sbjct: 113 RRELEFREKLLDKEGWNDLLLLEVELQRVLLELYLLMKAITTA 155
>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 200 amino acids in length. This
domain is found associated with pfam00013, pfam01966.
This domain has a single completely conserved residue A
that may be functionally important.
Length = 201
Score = 28.7 bits (65), Expect = 5.1
Identities = 25/96 (26%), Positives = 52/96 (54%), Gaps = 9/96 (9%)
Query: 409 RLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEK 468
+LR +AERE +ER L + E +D R+ +EE EE E+E +++
Sbjct: 64 KLRAEAERELKERRNELQRQEKRLLQKEETLD---RKDESLEKKEESLEEKEKELAARQQ 120
Query: 469 KKEKKKKKKKKKKKKEEEEEEE------EEKKKMMM 498
+ E+K+++ ++ +++++E E EE K++++
Sbjct: 121 QLEEKEEELEELIEEQQQELERISGLTAEEAKEILL 156
>gnl|CDD|219939 pfam08619, Nha1_C, Alkali metal cation/H+ antiporter Nha1 C
terminus. The C terminus of the plasma membrane Nha1
antiporter plays an important role in the immediate cell
response to hypo-osmotic shock which prevents an
execessive loss of ions and water. This domain is found
with pfam00999.
Length = 430
Score = 29.4 bits (66), Expect = 5.2
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 395 KPVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEE 454
P+ DSK K E+ L + S +P RR E +
Sbjct: 340 SPLTDSKSEEKLEDDLAHSLLGSEASERRKNREPS---SSSPPSRPRSRRDSEDEDTERD 396
Query: 455 EEEEGEEEEEEKEKK 469
+ + +EEE E++
Sbjct: 397 DSDSDDEEETPAERR 411
>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe. JAK1 is a
tyrosine kinase protein essential in signaling type I
and type II cytokines. It interacts with the gamma chain
of type I cytokine receptors to elicit signals from the
IL-2 receptor family, the IL-4 receptor family, the
gp130 receptor family, ciliary neurotrophic factor
receptor (CNTF-R), neurotrophin-1 receptor (NNT-1R) and
Leptin-R). It also is involved in transducing a signal
by type I (IFN-alpha/beta) and type II (IFN-gamma)
interferons, and members of the IL-10 family via type II
cytokine receptors. JAK (also called Just Another
Kinase) is a family of intracellular, non-receptor
tyrosine kinases that transduce cytokine-mediated
signals via the JAK-STAT pathway. The JAK family in
mammals consists of 4 members: JAK1, JAK2, JAK3 and
TYK2. JAKs are composed of seven JAK homology (JH)
domains (JH1-JH7) . The C-terminal JH1 domain is the
main catalytic domain, followed by JH2, which is often
referred to as a pseudokinase domain, followed by
JH3-JH4 which is homologous to the SH2 domain, and
lastly JH5-JH7 which is a FERM domain. Named after
Janus, the two-faced Roman god of doorways, JAKs possess
two near-identical phosphate-transferring domains; one
which displays the kinase activity (JH1), while the
other negatively regulates the kinase activity of the
first (JH2). The FERM domain has a cloverleaf tripart
structure (FERM_N, FERM_M, FERM_C/N, alpha-, and
C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The
C-lobe/F3 within the FERM domain is part of the PH
domain family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved
in signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 198
Score = 28.6 bits (64), Expect = 5.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEE 486
E++++ K KK + K KK + KKK E
Sbjct: 90 EKKKKGKSKKNKLKGKKDEDKKKAREG 116
Score = 28.3 bits (63), Expect = 8.6
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 467 EKKKEKKKKKKKKKKKKEEEEEEEEE 492
EKKK+ K KK K K KK+E++++ E
Sbjct: 90 EKKKKGKSKKNKLKGKKDEDKKKARE 115
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 29.5 bits (66), Expect = 5.5
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 449 GGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIR 504
GG E+EE +E+ + + K+KK++ + E ++E + +K ++ KIR
Sbjct: 720 GGDSEDEEGMDDEQMMRLDTYLAQIFKEKKERIQAGGETKKEAQSQKQNVISFKIR 775
>gnl|CDD|220231 pfam09420, Nop16, Ribosome biogenesis protein Nop16. Nop16 is a
protein involved in ribosome biogenesis.
Length = 173
Score = 28.6 bits (64), Expect = 5.5
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 9/75 (12%)
Query: 436 PERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK-- 493
R G E + +E EE+ E ++ +E+ + KK ++ + EEE E+
Sbjct: 79 KGEARIERDDKGNPLDEPLDSKEEEEKPEVVKQLEEEASEPAKKPRRLSKREEEWIERLV 138
Query: 494 -------KKMMMMMK 501
K M K
Sbjct: 139 EKHGDDYKAMARDRK 153
>gnl|CDD|203462 pfam06476, DUF1090, Protein of unknown function (DUF1090). This
family consists of several bacterial proteins of unknown
function and is known as YqjC in E. coli.
Length = 115
Score = 28.0 bits (63), Expect = 5.5
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
EE+E+E E E+E KE + + K +KK++K E + E ++
Sbjct: 73 EEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAELQE 114
>gnl|CDD|219761 pfam08243, SPT2, SPT2 chromatin protein. This family includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 116
Score = 27.9 bits (62), Expect = 5.6
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKK 474
E+E E EEEEEK KKK+K K
Sbjct: 94 LEDERELAREEEEEKRKKKKKNK 116
>gnl|CDD|150420 pfam09744, Jnk-SapK_ap_N, JNK_SAPK-associated protein-1. This is
the N-terminal 200 residues of a set of proteins
conserved from yeasts to humans. Most of the proteins in
this entry have an RhoGEF pfam00621 domain at their
C-terminal end.
Length = 158
Score = 28.5 bits (64), Expect = 5.7
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
E E + E + ++EK+ +K+ ++K E E+E E+EKK
Sbjct: 51 ELELLREDNERLSTQYEREKELRKQAEQKLLEFEDELEQEKK 92
>gnl|CDD|218555 pfam05320, Pox_RNA_Pol_19, Poxvirus DNA-directed RNA polymerase 19
kDa subunit. This family contains several DNA-directed
RNA polymerase 19 kDa polypeptides. The Poxvirus
DNA-directed RNA polymerase (EC: 2.7.7.6) catalyzes
DNA-template-directed extension of the 3'-end of an RNA
strand by one nucleotide at a time.
Length = 167
Score = 28.5 bits (64), Expect = 5.7
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
EEEEE+E + E E K+ K + E E+ K++ + I+RR
Sbjct: 21 EEEEEDEEDAESLESSDVSSLKQSNYKIESASENIEDATSNPKQVSEKISAIKRR 75
>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import
receptor (72 kDa mitochondrial outermembrane protein)
(mitochondrial import receptor for the ADP/ATP carrier)
(translocase of outermembrane tom70). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 615
Score = 29.2 bits (65), Expect = 5.8
Identities = 12/35 (34%), Positives = 26/35 (74%)
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ ++++E K + KK+++K+K+ E+E E + E+KK
Sbjct: 58 KGQQQRESKPKISKKERRKRKQAEKETEGKTEEKK 92
>gnl|CDD|217020 pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-terminal domain.
This domain is found associated with the Pfam tRNA
synthetase class II domain (pfam00587) and represents
the N-terminal domain of seryl-tRNA synthetase.
Length = 108
Score = 27.6 bits (62), Expect = 5.9
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
++E+ E + K+ K + K E E E E +
Sbjct: 65 KKEDAEALIAEVKELKDELKALEAELRELEAE 96
Score = 27.2 bits (61), Expect = 10.0
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMM 500
++E+ + E K+ K + K + E E E E K+++ +
Sbjct: 65 KKEDAEALIAEVKELKDELKALEAELRELEAELDKLLLSI 104
>gnl|CDD|227474 COG5145, RAD14, DNA excision repair protein [DNA replication,
recombination, and repair].
Length = 292
Score = 28.8 bits (64), Expect = 5.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEE 489
G EE + E + E+ K+ +KEKK +KK K+ +++
Sbjct: 209 GSLEELDREKQRREKMKDDRKEKKLEKKIKELRRKTRTSN 248
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 29.3 bits (66), Expect = 6.0
Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 4/92 (4%)
Query: 113 ATASPPASAISGSKSRGIGDPIPNHILLSEHKPRPSESQSSSSAQPPSSSPDCHSLPACL 172
+PPA+A + + P P +S P ++ P + A
Sbjct: 120 TGGAPPAAAPA--AAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKP 177
Query: 173 CYQLELEHLEREKREREIRELRERELNDRIKE 204
RE R R +R+R + +R+K
Sbjct: 178 PPTPVARADPRETRVPMSR-MRQR-IAERLKA 207
>gnl|CDD|225405 COG2849, COG2849, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 230
Score = 28.9 bits (65), Expect = 6.0
Identities = 8/54 (14%), Positives = 19/54 (35%)
Query: 448 GGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMK 501
G E + ++ ++K K E +E+ +E K++ +
Sbjct: 1 KGDIVETSKNGVDDGVTITYYLNGAIEEKANYVNKLEGKEKLYDEDGKLLSKLD 54
>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region. This
domain is the C-terminal end of ribosomal L18/L5
proteins.
Length = 93
Score = 27.1 bits (61), Expect = 6.1
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEEEEE 491
+K++KKE K + K+ KK E+ +
Sbjct: 62 KKKEKKEVKAESKRYNAKKLTLEQRKA 88
Score = 27.1 bits (61), Expect = 7.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 468 KKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
KKKEKK+ K + K+ ++ E+ K +
Sbjct: 62 KKKEKKEVKAESKRYNAKKLTLEQRKAR 89
>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta;
Provisional.
Length = 752
Score = 29.3 bits (66), Expect = 6.1
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 444 RRGGGGGGEEEEE---EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+R G E EE E E +K K K++ ++ E + E +
Sbjct: 255 KRMGAYKTIEGEELLKLEERTAAWRAELRKSMKPKERTAIERVPMPELDPEYRAH 309
>gnl|CDD|215591 PLN03124, PLN03124, poly [ADP-ribose] polymerase; Provisional.
Length = 643
Score = 29.4 bits (66), Expect = 6.2
Identities = 20/77 (25%), Positives = 34/77 (44%)
Query: 400 SKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEG 459
+ + +R+ E E +LL R +++ + G G E+E+E+G
Sbjct: 74 IAIDEVKGMTVRELREAASERGLATTGRKKDLLERLCAALESDVKVGSANGTGEDEKEKG 133
Query: 460 EEEEEEKEKKKEKKKKK 476
+EE EKE+K KK
Sbjct: 134 GDEEREKEEKIVTATKK 150
>gnl|CDD|219555 pfam07753, DUF1609, Protein of unknown function (DUF1609). This
region is found in a number of hypothetical proteins
thought to be expressed by the eukaryote Encephalitozoon
cuniculi, an obligate intracellular microsporidial
parasite. It is approximately 200 residues long.
Length = 230
Score = 28.6 bits (64), Expect = 6.2
Identities = 16/35 (45%), Positives = 17/35 (48%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEE 486
EEEE EE E EE + KKK KKK K
Sbjct: 1 EEEESEEAEVPLEEMAVGGARAKKKGGKKKSKGGR 35
>gnl|CDD|118038 pfam09501, Bac_small_YrzI, Probable sporulation protein
(Bac_small_yrzI). Members of this family are very small
proteins, about 47 residues each, in the genus Bacillus.
Single members are found in Bacillus subtilis and
Bacillus halodurans, while arrays of six members in
tandem are found in Bacillus cereus and Bacillus
anthracis. An EIxxE motif present in most members of
this family resembles cleavage sites by the germination
protease GPR in a number of small acid-soluble spore
proteins (SASP). A role in sporulation is possible.
Length = 46
Score = 26.1 bits (58), Expect = 6.4
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 478 KKKKKKEEEEEEEEEKKKMMMMMKKIR 504
+K+ E E E+E++ +K+M MK +
Sbjct: 13 QKRTLSEAEIEQEQQIEKIMDEMKDRQ 39
>gnl|CDD|216546 pfam01516, Orbi_VP6, Orbivirus helicase VP6. The VP6 protein a
minor protein in the core of the virion is probably the
viral helicase.
Length = 322
Score = 28.9 bits (64), Expect = 6.4
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 448 GGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEE 487
G E+E ++E +E+ + + E+K+K K++ KE E+
Sbjct: 31 GESKEKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETED 70
>gnl|CDD|217206 pfam02731, SKIP_SNW, SKIP/SNW domain. This domain is found in
chromatin proteins.
Length = 158
Score = 28.4 bits (64), Expect = 6.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 401 KLARKREERLRKQAEREREER 421
K +++EE+LR+ A+R REER
Sbjct: 138 KEKQEKEEKLRELAQRAREER 158
>gnl|CDD|222859 PHA02535, P, terminase ATPase subunit; Provisional.
Length = 581
Score = 29.3 bits (66), Expect = 6.4
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 417 EREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKK 476
E+E + +LL R ER+ RR G G E + + K K+
Sbjct: 66 EKENKTGGDYKEIDLLIRQHERLARVRRYSGTGN---------EADLNPNVANRNKGPKR 116
Query: 477 KKKKKKKEEEEEEEEEK 493
K K +E+ E+ +
Sbjct: 117 KPVKNDISDEQTEKLIE 133
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 28.7 bits (64), Expect = 6.4
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 432 LSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEE-E 490
L R PE +D EE ++E EE +E E+ + + ++ +++ K+ E E E
Sbjct: 124 LQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLE 183
Query: 491 EEKKKMMMMMKKIRRRPKE 509
E KK+ + +++R E
Sbjct: 184 EMLKKLPGEVYDLKKRWDE 202
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 29.2 bits (66), Expect = 6.5
Identities = 17/111 (15%), Positives = 50/111 (45%), Gaps = 22/111 (19%)
Query: 406 REERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEE 465
R+ R R++ REE + + + ++ R E E+ ++E++
Sbjct: 624 RDNRTRREGRENREENRRNR-------RQAQQQTAETRESQQ----AEVTEKARTQDEQQ 672
Query: 466 KEKKKEKKKKKKKKKKKKEEEE-----------EEEEEKKKMMMMMKKIRR 505
+ ++E+++++ +K++ ++E E E+E++ + ++ +R
Sbjct: 673 QAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETEQEERVQQVQPRRKQR 723
>gnl|CDD|227038 COG4694, COG4694, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 758
Score = 29.1 bits (65), Expect = 6.6
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKK---KKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
++ E+ E ++E KK EKK K + K ++EE+EE++ + KK R KE+
Sbjct: 115 DDLEKIESKKESINKKNEKKIKNEASLQVKTQREEKEEKDFIADCWRNLYKKNEERFKEY 174
Query: 511 L 511
L
Sbjct: 175 L 175
Score = 29.1 bits (65), Expect = 6.8
Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKK---KKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPK 508
+ E++ + E + K +++EK++K + ++ EE +E + K R+ K
Sbjct: 130 KNEKKIKNEASLQVKTQREEKEEKDFIADCWRNLYKKNEERFKEYLENFKRKKFKRKILK 189
Query: 509 EF 510
EF
Sbjct: 190 EF 191
>gnl|CDD|236243 PRK08327, PRK08327, acetolactate synthase catalytic subunit;
Validated.
Length = 569
Score = 29.2 bits (66), Expect = 6.6
Identities = 22/96 (22%), Positives = 28/96 (29%), Gaps = 5/96 (5%)
Query: 175 QLELEHLEREKREREIRELRERELNDRIKEDLIKNASRPFDPHWLELQRSSLDALRAHAL 234
E +R +RELR R+ + E P P +L L +
Sbjct: 346 LASAERRRARRRRAAVRELRIRQEAAKRAEIERLKDRGPITPAYLS---YCLGEVADEYD 402
Query: 235 AAALHSPLPPHGMAAGHPA--FLPPEMGGLPHGLGM 268
A P P P F GGL LG
Sbjct: 403 AIVTEYPFVPRQARLNKPGSYFGDGSAGGLGWALGA 438
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 28.9 bits (65), Expect = 6.6
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 469 KKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
K EK KKK K+K+K E+ ++ + K + +K+IRRR
Sbjct: 69 KDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRR 106
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 28.8 bits (65), Expect = 6.7
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
E+ EE+ ++ E +K+K +++ ++EE+E E K+
Sbjct: 4 FEKLEEELEELEAEKEKIEEEDEEEEKEGWFERLKQG 40
>gnl|CDD|221049 pfam11262, Tho2, Transcription factor/nuclear export subunit
protein 2. THO and TREX form a eukaryotic complex which
functions in messenger ribonucleoprotein metabolism and
plays a role in preventing the transcription-associated
genetic instability. Tho2, along with four other
subunits forms THO.
Length = 296
Score = 28.8 bits (65), Expect = 6.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 468 KKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIR 504
KKKEKK+ K KK +EE ++ E +K + + +
Sbjct: 53 KKKEKKRLKSLIKKLEEELKKHIEHNEKTKKRLSEEK 89
>gnl|CDD|227225 COG4888, COG4888, Uncharacterized Zn ribbon-containing protein
[General function prediction only].
Length = 104
Score = 27.5 bits (61), Expect = 6.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 443 RRRGGGGGGEEEEEEEGEEEEEE 465
R G G +EE ++E E EE
Sbjct: 80 GRGCGESGTDEENDQEIESPGEE 102
>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional.
Length = 931
Score = 29.1 bits (66), Expect = 7.1
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 178 LEHLEREKREREIRE-LRERELNDRIKEDLIKNASRPFDPHWLELQRSSLDALRAHA 233
L R +R +E LRE L+D K D +R + +WL + LD HA
Sbjct: 655 FSELNRAERVAAAKEALREA-LSDWPKADRDAYLARHYPAYWLAV---DLDTQARHA 707
>gnl|CDD|223726 COG0653, SecA, Preprotein translocase subunit SecA (ATPase, RNA
helicase) [Intracellular trafficking and secretion].
Length = 822
Score = 29.1 bits (66), Expect = 7.2
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMM 500
+ + E E EEE E+ + + KK++ E E E+ M+ ++
Sbjct: 674 INKSDLEDEAEEELAERILKAADEAYDKKEEVGPEAMREFERYVMLQVL 722
>gnl|CDD|234428 TIGR03979, His_Ser_Rich, His-Xaa-Ser repeat protein HxsA. Members
of this protein share two defining regions. One is a
histidine/serine-rich cluster, typically
H-R-S-H-S-S-H-R-S-H-S-S-H. Members are found always in
the context of a pair of radical SAM proteins, HxsB and
HxsC, and a fourth protein HxsD. The system is predicted
to perform peptide modifications, likely in the
His-Xaa-Ser region, to produce some uncharacterized
natural product.
Length = 186
Score = 28.3 bits (63), Expect = 7.2
Identities = 31/132 (23%), Positives = 40/132 (30%), Gaps = 25/132 (18%)
Query: 67 ALSQAGLSHVASATLSQTTSSSVSTNH-------GPQSHSHHHQHSHHHHHQTATASPPA 119
+ A + + L T N G +SHS H HS H H
Sbjct: 18 KGAAAPEAGLTDDNLEPTDVELAPLNVDIPNLLAGHRSHSSHRSHSSHSSH--------Y 69
Query: 120 SAISGSKSRGIGDPIPNHILLSEHKPRPSESQSSSSAQPPSSSPDCHSLPACLCYQLELE 179
S GS S GD + P S S S P SS + Q E
Sbjct: 70 SGAGGSYSVPSGD--------TSTYSYPVPSPSYSP--SPGSSIQSLPSTTGVRPQSSAE 119
Query: 180 HLEREKREREIR 191
+ EKR+ +
Sbjct: 120 NANSEKRKLLVI 131
Score = 28.3 bits (63), Expect = 7.4
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 26 HSSHHSSSVHH-HSEHSKQTISHSTSSSATSVQHKMKRGTSPALSQAGLSHVASATLSQT 84
HSSH S S H H + + S + ++T SP+ + S ++ +
Sbjct: 56 HSSHRSHSSHSSHYSGAGGSYSVPSGDTSTYSYPVPSPSYSPSPGSSIQSLPSTTGVRPQ 115
Query: 85 TSSSVSTN 92
+S+ + +
Sbjct: 116 SSAENANS 123
>gnl|CDD|99918 cd05535, POLBc_epsilon, DNA polymerase type-B epsilon subfamily
catalytic domain. Three DNA-dependent DNA polymerases
type B (alpha, delta, and epsilon) have been identified
as essential for nuclear DNA replication in eukaryotes.
DNA polymerase (Pol) epsilon has been proposed to play a
role in elongation of the leading strand during DNA
replication. Pol epsilon might also have a role in DNA
repair. The structure of pol epsilon is characteristic
of this family with the exception that it contains a
large c-terminal domain with an unclear function.
Phylogenetic analyses indicate that Pol epsilon is the
ortholog to the archaeal Pol B3 rather than to Pol
alpha, delta, or zeta. This might be because pol epsilon
is ancestral to both archaea and eukaryotes DNA
polymerases type B.
Length = 621
Score = 29.2 bits (66), Expect = 7.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 468 KKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMM 500
K K KKK + K + E +E KKM+++
Sbjct: 239 KGLHKVWKKKLEAAKAAGDAAEIKEAKKMVVLY 271
>gnl|CDD|219996 pfam08738, Gon7, Gon7 family. In S. cerevisiae Gon7 is a member of
the KEOPS protein complex. A protein complex proposed to
be involved in transcription and promoting telomere
uncapping and telomere elongation.
Length = 97
Score = 27.0 bits (60), Expect = 7.3
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 469 KKEKKKKKKKKKKKKEEEEEEEE 491
+++KKK K + +KE E++EEE
Sbjct: 72 EEDKKKAAAKGRGEKEIEDKEEE 94
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 29.0 bits (64), Expect = 7.4
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 453 EEEEEEGE-EEEEEKEKKKEKKKKKKKK----KKKKEEEEEEEEEK 493
EE + GE + + + +KKKKKKKK K K+E + E E+
Sbjct: 89 EEINKSGEFDNITDDDTPSKKKKKKKKKGWFWAKSKQESKTIETEE 134
>gnl|CDD|218152 pfam04568, IATP, Mitochondrial ATPase inhibitor, IATP. ATP
synthase inhibitor prevents the enzyme from switching to
ATP hydrolysis during collapse of the electrochemical
gradient, for example during oxygen deprivation ATP
synthase inhibitor forms a one to one complex with the
F1 ATPase, possibly by binding at the alpha-beta
interface. It is thought to inhibit ATP synthesis by
preventing the release of ATP. The minimum inhibitory
region for bovine inhibitor is from residues 39 to 72.
The inhibitor has two oligomeric states, dimer (the
active state) and tetramer. At low pH, the inhibitor
forms a dimer via antiparallel coiled coil interactions
between the C terminal regions of two monomers. At high
pH, the inhibitor forms tetramers and higher oligomers
by coiled coil interactions involving the N terminus and
inhibitory region, thus preventing the inhibitory
activity.
Length = 90
Score = 27.0 bits (60), Expect = 7.4
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 445 RGGGG--GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
RGGGG GG + E +EEE ++K+KE+ K+K ++ ++E EE E+
Sbjct: 38 RGGGGEAGGAFGKREAAQEEEYFRQKEKEQLAALKEKLEEHKKEIEELEKH 88
>gnl|CDD|233160 TIGR00869, sec62, protein translocation protein, Sec62 family.
Members of the NSCC2 family have been sequenced from
various yeast, fungal and animals species including
Saccharomyces cerevisiae, Drosophila melanogaster and
Homo sapiens. These proteins are the Sec62 proteins,
believed to be associated with the Sec61 and Sec63
constituents of the general protein secretary systems of
yeast microsomes. They are also the non-selective cation
(NS) channels of the mammalian cytoplasmic membrane. The
yeast Sec62 protein has been shown to be essential for
cell growth. The mammalian NS channel proteins has been
implicated in platelet derived growth factor(PGDF)
dependent single channel current in fibroblasts. These
channels are essentially closed in serum deprived
tissue-culture cells and are specifically opened by
exposure to PDGF. These channels are reported to exhibit
equal selectivity for Na+, K+ and Cs+ with low
permeability to Ca2+, and no permeability to anions
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 232
Score = 28.3 bits (63), Expect = 7.5
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEE 488
EK+K KKK K KK KKK+ + E
Sbjct: 207 EKDKYSYKKKLKSKKLKKKQAKRE 230
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 28.9 bits (64), Expect = 7.6
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 447 GGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKK 480
G + + EE+ ++ EEE K K K KK
Sbjct: 108 DTKGSKTDSEEDDDDSEEEDNKSTSSKDGKGSKK 141
Score = 28.9 bits (64), Expect = 9.1
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 440 DTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKK 479
+T + + G + EE++ + EEE+ + K K KK
Sbjct: 102 NTEQNQDTKGSKTDSEEDDDDSEEEDNKSTSSKDGKGSKK 141
>gnl|CDD|148072 pfam06244, DUF1014, Protein of unknown function (DUF1014). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 122
Score = 27.4 bits (61), Expect = 7.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
EE E++++K E ++K KK +E EE
Sbjct: 6 EERLEKEQRKLEAPEEKSKKNAAREVPLEENLN 38
>gnl|CDD|216985 pfam02349, MSG, Major surface glycoprotein. This is a novel repeat
in Pneumocystis carinii Major surface glycoprotein (MSG)
some members of the alignment have up to nine repeats of
this family, the repeats containing several conserved
cysteines. The MSG of P. carinii is an important protein
in host-pathogen interactions. Surface glycoprotein A
from Pneumocystis carinii is a main target for the host
immune system, this protein is implicated in the
attachment of Pneumocystis carinii to the host alveolar
epithelial cells, alveolar macrophages, host surfactant
and possibly accounts in part for the hypoxia seen in
Pneumocystis carinii pneumonia (PCP).
Length = 81
Score = 26.6 bits (59), Expect = 7.6
Identities = 10/44 (22%), Positives = 24/44 (54%)
Query: 466 KEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
+ KK+ K ++ K+ K E +++++ KK + K+++ E
Sbjct: 38 YKLKKDLKLEELLLKELKGELKKKKKCKKALKEKCTKLKKESNE 81
>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain. This
presumed domain is found at the N-terminus of Ribosomal
L30 proteins and has been termed RL30NT or NUC018.
Length = 71
Score = 26.4 bits (59), Expect = 7.7
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
E+ + K+ +K+ KK +KKK + + EK
Sbjct: 10 EKLRAKRAKKRAAKKAARKKKRKLIFKRAEK 40
>gnl|CDD|184732 PRK14539, PRK14539, 50S ribosomal protein L11/unknown domain fusion
protein; Provisional.
Length = 196
Score = 28.4 bits (63), Expect = 7.7
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+EE K K K K+ K E E + K K
Sbjct: 146 KEEAKAAAKAAALAKAKEASLKSAEAELKASKGK 179
>gnl|CDD|184536 PRK14145, PRK14145, heat shock protein GrpE; Provisional.
Length = 196
Score = 28.3 bits (63), Expect = 7.9
Identities = 8/53 (15%), Positives = 33/53 (62%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIR 504
E+ EG E+E+ ++ + +++ + ++ K++ +++E E ++ + + ++++
Sbjct: 20 SSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEVEAQEYLDIAQRLK 72
>gnl|CDD|220129 pfam09159, Ydc2-catalyt, Mitochondrial resolvase Ydc2 / RNA
splicing MRS1. Members of this family adopt a secondary
structure consisting of two beta sheets and one alpha
helix, arranged as a beta-alpha-beta motif. Each beta
sheet has five strands, arranged in a 32145 order, with
the second strand being antiparallel to the rest.
Mitochondrial resolvase Ydc2 is capable of resolving
Holliday junctions and cleaves DNA after 5'-CT-3' and
5'-TT-3' sequences. This family also contains the
mitochondrial RNA-splicing protein MRS1 which is
involved in the excision of group I introns.
Length = 254
Score = 28.5 bits (64), Expect = 7.9
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKK 482
E E E+++ KK+ K KK +
Sbjct: 147 ERTEILAEKKKPRSKKKSSKNSKKLRID 174
Score = 28.1 bits (63), Expect = 9.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKK 483
E E EK+K + KKK K KK +
Sbjct: 147 ERTEILAEKKKPRSKKKSSKNSKKLR 172
>gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564. This
family of proteins has no known function. However, one
of the members is annotated as an EF-hand family
protein.
Length = 349
Score = 28.6 bits (64), Expect = 8.0
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 467 EKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRP 507
+++K+K++KK ++ K EEE + E+K++ KK + P
Sbjct: 13 KREKKKREKKSIRQSKLEEELNKLEKKEEEAECKKKFKANP 53
>gnl|CDD|225860 COG3323, COG3323, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 109
Score = 27.3 bits (61), Expect = 8.0
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 332 GDYNSCCRTDL---TFKPVPDSKLARKREERLRKQAELKIKLFCPVFLRH 378
G+Y+ C + F+P+ + +L AE+KI+ P LR
Sbjct: 33 GNYDHCTFSSEGTGQFRPLEGANPFIGEVGKLEFVAEVKIEFVVPAELRA 82
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein
[Function unknown].
Length = 294
Score = 28.5 bits (64), Expect = 8.0
Identities = 13/64 (20%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKK-KKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
+E E + ++ +EE E+ KEK+ + +K+ + E+ +E + +++ +++R E
Sbjct: 8 LDELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEI 67
Query: 511 LHRI 514
+
Sbjct: 68 NEEV 71
>gnl|CDD|220388 pfam09766, FimP, Fms-interacting protein. This entry carries part
of the crucial 144 N-terminal residues of the FmiP
protein, which is essential for the binding of the
protein to the cytoplasmic domain of activated
Fms-molecules in M-CSF induced haematopoietic
differentiation of macrophages. The C-terminus contains
a putative nuclear localisation sequence and a leucine
zipper which suggest further, as yet unknown, nuclear
functions. The level of FMIP expression might form a
threshold that determines whether cells differentiate
into macrophages or into granulocytes.
Length = 352
Score = 28.5 bits (64), Expect = 8.0
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 451 GEEEEEEEGEEEEE-------EKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E+ +E E E++KE +K K+ + +KE+ +++ E+KK+
Sbjct: 78 ISRPEKTPLDEHNLMLARLEWELEQRKELAEKLKELESEKEKLQQDIEKKKE 129
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase
inhibitor.
Length = 553
Score = 28.6 bits (64), Expect = 8.1
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 18/75 (24%)
Query: 93 HGPQSHSHHHQHSHHHHHQTATASPPASAISGSKSRGIGDPIPNHILLSEHKPRPSE--- 149
H P S S+ HHHHH + + PP S+ S P ILL+ + R +
Sbjct: 16 HSPSSSSN----RHHHHHTPSPSPPPPSSPS----------TPPQILLACNATRFPDTCV 61
Query: 150 -SQSSSSAQPPSSSP 163
S S++ PP P
Sbjct: 62 SSLSNAGRVPPDPKP 76
>gnl|CDD|217553 pfam03430, TATR, Trans-activating transcriptional regulator. This
family of trans-activating transcriptional regulator
(TATR), also known as intermediate early protein 1, are
common to the Nucleopolyhedroviruses.
Length = 571
Score = 28.7 bits (64), Expect = 8.1
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKK-----KKKEEEEEEEEE 492
+ + + + + +K K KK++K KK EEE E
Sbjct: 133 DSDSDSSDSSKGKKLVNKPKKRQKYKKATIQSPTSLTEEENYNTE 177
>gnl|CDD|222667 pfam14308, DnaJ-X, X-domain of DnaJ-containing. IN certain plant
and yeast proteins, the DnaJ-1 proteins have a
three-domain structure. The x-domain lies between the
N-terminal DnaJ and the C-terminal Z domains. The exact
function is not known.
Length = 204
Score = 28.3 bits (64), Expect = 8.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKK 476
++ EE+ GE EEE + +EK K
Sbjct: 109 KKLEEKGGELTEEELAEMEEKVTGK 133
>gnl|CDD|204519 pfam10587, EF-1_beta_acid, Eukaryotic elongation factor 1 beta
central acidic region.
Length = 28
Score = 25.3 bits (56), Expect = 8.4
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKK 481
+ EEE+EE E+ +E++ KK
Sbjct: 5 DDEEEDEEAERIREERLAAYAAKK 28
>gnl|CDD|220624 pfam10187, Nefa_Nip30_N, N-terminal domain of NEFA-interacting
nuclear protein NIP30. This is a the N-terminal 100
amino acids of a family of proteins conserved from
plants to humans. The full-length protein has putatively
been called NEFA-interacting nuclear protein NIP30,
however no reference could be found to confirm this.
Length = 99
Score = 27.0 bits (60), Expect = 8.5
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
E+E E + E+ ++ +KK+K+EE EE EE
Sbjct: 67 EDEVEFLDEVEESRRAAEKKRKREEAEELEE 97
>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit
[Energy production and conversion].
Length = 470
Score = 28.6 bits (64), Expect = 8.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 452 EEEEEEEGEEEEEEKEKKKE 471
EEEEEE EEEEEE + +
Sbjct: 402 AEEEEEEEEEEEEEAAEAEA 421
>gnl|CDD|220714 pfam10357, Kin17_mid, Domain of Kin17 curved DNA-binding protein.
Kin17_mid is the conserved central 169 residue region of
a family of Kin17 proteins. Towards the N-terminal end
there is a zinc-finger domain, and in human and mouse
members there is a RecA-like domain further downstream.
The Kin17 protein in humans forms intra-nuclear foci
during cell proliferation and is re-distributed in the
nucleoplasm during the cell cycle.
Length = 127
Score = 27.6 bits (62), Expect = 8.5
Identities = 10/29 (34%), Positives = 22/29 (75%)
Query: 473 KKKKKKKKKKKEEEEEEEEEKKKMMMMMK 501
K++++ +KK+K+E+ +EE E+K + +K
Sbjct: 99 KRQEELRKKEKQEKTDEEREQKLLEEQIK 127
>gnl|CDD|234045 TIGR02876, spore_yqfD, sporulation protein YqfD. YqfD is part of
the sigma-E regulon in the sporulation program of
endospore-forming Gram-positive bacteria. Mutation
results in a sporulation defect in Bacillus subtilis.
Members are found in all currently known
endospore-forming bacteria, including the genera
Bacillus, Symbiobacterium, Carboxydothermus,
Clostridium, and Thermoanaerobacter [Cellular processes,
Sporulation and germination].
Length = 382
Score = 28.5 bits (64), Expect = 8.7
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKI 503
+E E +E+ EK K++ +K K+K E+E ++E ++ KI
Sbjct: 312 VKETYYEVKEKVEKV--TKEEAIEKAKEKAEKELKKELDPNAKIVSDKI 358
>gnl|CDD|234306 TIGR03674, fen_arch, flap structure-specific endonuclease.
Endonuclease that cleaves the 5'-overhanging flap
structure that is generated by displacement synthesis
when DNA polymerase encounters the 5'-end of a
downstream Okazaki fragment. Has 5'-endo-/exonuclease
and 5'-pseudo-Y-endonuclease activities. Cleaves the
junction between single and double-stranded regions of
flap DNA.
Length = 338
Score = 28.4 bits (64), Expect = 8.8
Identities = 8/36 (22%), Positives = 21/36 (58%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMM 498
E E+++E +++ ++K ++ E+ + EE +K
Sbjct: 88 AETLEERREIREEAEEKWEEALEKGDLEEARKYAQR 123
>gnl|CDD|184860 PRK14858, tatA, twin arginine translocase protein A; Provisional.
Length = 108
Score = 27.1 bits (60), Expect = 8.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
+EE EE+EK +K + KK+ + + K EE++ + K
Sbjct: 51 QEESRTAEEKEKAEKLAETKKEAEAPEAKAEEDQAPKPKG 90
>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms].
Length = 962
Score = 28.9 bits (65), Expect = 8.9
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEE------EEEEKKKMMMMMKKIRR 505
EEE ++ EEE +E+ K E E +E+ ++ K +
Sbjct: 888 EEEFKQFAEEEGLNEEELAFYDDLALNGGKLPENGTELVEKLAKEKSLREKNKDDWKAKE 947
Query: 506 RPKEFL 511
+ L
Sbjct: 948 EVEAKL 953
>gnl|CDD|187656 cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup 2, complex (x)
SDRs. Ketoreductase, a module of the multidomain
polyketide synthase (PKS), has 2 subdomains, each
corresponding to a SDR family monomer. The C-terminal
subdomain catalyzes the NADPH-dependent reduction of the
beta-carbonyl of a polyketide to a hydroxyl group, a
step in the biosynthesis of polyketides, such as
erythromycin. The N-terminal subdomain, an interdomain
linker, is a truncated Rossmann fold which acts to
stabilizes the catalytic subdomain. Unlike typical SDRs,
the isolated domain does not oligomerize but is composed
of 2 subdomains, each resembling an SDR monomer. The
active site resembles that of typical SDRs, except that
the usual positions of the catalytic Asn and Tyr are
swapped, so that the canonical YXXXK motif changes to
YXXXN. Modular PKSs are multifunctional structures in
which the makeup recapitulates that found in (and may
have evolved from) FAS. Polyketide synthesis also
proceeds via the addition of 2-carbon units as in fatty
acid synthesis. The complex SDR NADP-binding motif,
GGXGXXG, is often present, but is not strictly conserved
in each instance of the module. This subfamily includes
both KR domains of the Bacillus subtilis Pks J,-L, and
PksM, and all three KR domains of PksN, components of
the megacomplex bacillaene synthase, which synthesizes
the antibiotic bacillaene. SDRs are a functionally
diverse family of oxidoreductases that have a single
domain with a structurally conserved Rossmann fold
(alpha/beta folding pattern with a central beta-sheet),
an NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Classical SDRs are typically about
250 residues long, while extended SDRs are approximately
350 residues. Sequence identity between different SDR
enzymes are typically in the 15-30% range, but the
enzymes share the Rossmann fold NAD-binding motif and
characteristic NAD-binding and catalytic sequence
patterns. These enzymes catalyze a wide range of
activities including the metabolism of steroids,
cofactors, carbohydrates, lipids, aromatic compounds,
and amino acids, and act in redox sensing. Classical
SDRs have an TGXXX[AG]XG cofactor binding motif and a
YXXXK active site motif, with the Tyr residue of the
active site motif serving as a critical catalytic
residue (Tyr-151, human prostaglandin dehydrogenase
(PGDH) numbering). In addition to the Tyr and Lys, there
is often an upstream Ser (Ser-138, PGDH numbering)
and/or an Asn (Asn-107, PGDH numbering) contributing to
the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G
NAD(P)-binding motif. Some atypical SDRs have lost
catalytic activity and/or have an unusual NAD(P)-binding
motif and missing or unusual active site residues.
Reactions catalyzed within the SDR family include
isomerization, decarboxylation, epimerization, C=N bond
reduction, dehydratase activity, dehalogenation,
Enoyl-CoA reduction, and carbonyl-alcohol
oxidoreduction.
Length = 436
Score = 28.5 bits (64), Expect = 9.0
Identities = 20/117 (17%), Positives = 36/117 (30%), Gaps = 4/117 (3%)
Query: 179 EHLEREKREREIRELRERELNDRIKEDLIKNASRPFDPHWLELQRSSLDALRAHALAAAL 238
E +E +R + L+ + + A + + LDAL A AAAL
Sbjct: 22 EAMEERRRLEALASLQPVWAPAALASAFLALAYEAALLGLAAAEAALLDALSALDPAAAL 81
Query: 239 HSPLPPHGMAAGHPAFLPPEMGGLPHG----LGMPGVDSVKHEALTISGDEGSMQPE 291
+ L G G+D++ ++G ++ E
Sbjct: 82 QLLESLQRLLKAGLLAARASGRALLQVVTGLPGALGLDALDPAGAGLAGLLRTLAQE 138
>gnl|CDD|232985 TIGR00463, gltX_arch, glutamyl-tRNA synthetase, archaeal and
eukaryotic family. The glutamyl-tRNA synthetases of the
eukaryotic cytosol and of the Archaea are more similar
to glutaminyl-tRNA synthetases than to bacterial
glutamyl-tRNA synthetases. This model models just the
eukaryotic cytosolic and archaeal forms of the enzyme.
In some eukaryotes, the glutamyl-tRNA synthetase is part
of a longer, multifunctional aminoacyl-tRNA ligase. In
many species, the charging of tRNA(gln) proceeds first
through misacylation with Glu and then transamidation.
For this reason, glutamyl-tRNA synthetases, including
all known archaeal enzymes (as of 2010) may act on both
tRNA(gln) and tRNA(glu) [Protein synthesis, tRNA
aminoacylation].
Length = 556
Score = 28.6 bits (64), Expect = 9.0
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMM 498
EE EE+++ K+ KKK+KK+K E + +++M
Sbjct: 52 EEVNSLSPEEQKELMKRLGLDIKKKEKKRKGLRELPGAKMGEVVM 96
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 28.6 bits (64), Expect = 9.0
Identities = 28/159 (17%), Positives = 52/159 (32%), Gaps = 18/159 (11%)
Query: 31 SSSVHHHSEHSKQTISHSTSSSATSVQHKMKRGTSPALSQAGLSHVASATLSQTTSSSVS 90
S + +++S +I + T + +S Q K +P+ + S S +
Sbjct: 143 EKSTNDSNKNSDSSIKNDTDTQ-SSKQDKADNQKAPSSNNTKPSTSNKQPNSPKPTQPNQ 201
Query: 91 TNHGPQSHSHHHQHSHHHHHQTATASPPASAISGSKSRGIGDPIPNHILLSEHKPRPSES 150
+N P S +S + S S D I + K + +
Sbjct: 202 SNSQPAS-------------DDTANQKSSSKDNQSMSDSALDSILDQYSEDAKKTQKDYA 248
Query: 151 QSSSSAQPPSSSPDCHSLPACLCYQLELEHLEREKRERE 189
S + +S+ LP Q EL+H + + E
Sbjct: 249 SQSKKDKTETSNTKNPQLPT----QDELKHKSKPAQSFE 283
>gnl|CDD|182885 PRK10991, fucI, L-fucose isomerase; Provisional.
Length = 588
Score = 28.8 bits (65), Expect = 9.1
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 455 EEEEGEEEEEE------KEKKKEKKKKKKKKKKKKEEEEEEE-EEKKKMMMMMK 501
+++ +EEE E K+ KE + + ++ ++ E++ EE KM M+++
Sbjct: 216 DQKIYDEEELEMALAWAKKNCKEGEDENAEQYQRNAEQKRAVWEESVKMAMIIR 269
>gnl|CDD|224112 COG1191, FliA, DNA-directed RNA polymerase specialized sigma
subunit [Transcription].
Length = 247
Score = 28.1 bits (63), Expect = 9.2
Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 405 KREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEE--EEEEEGEEE 462
RE + AE ++E+ ++ + +D + ++ E ++G E+
Sbjct: 124 GREPTDEEIAEELGIDKEEYIEALLAINGSQLLSLDEDVLKDDDDDVDDQIENPDDGVEK 183
Query: 463 EEEKEKKKEKKKKKKKKKK 481
EE E KE + +++K
Sbjct: 184 EELLEILKEAIEPLPEREK 202
>gnl|CDD|226520 COG4033, COG4033, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 102
Score = 27.0 bits (60), Expect = 9.2
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKK 483
+ E EE EK EK KK K KK K
Sbjct: 79 KVEAEEIEKLLEKYKKDKNVKKIK 102
>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane
glycoprotein G.
Length = 408
Score = 28.5 bits (63), Expect = 9.2
Identities = 32/164 (19%), Positives = 46/164 (28%), Gaps = 9/164 (5%)
Query: 9 SSVTTRMREEDAQEIMHHSSH-HSSSVHHHSEHSKQTISHSTSSSATSVQHKMKRGTSPA 67
++VTT E+ H + + + QT + + S+T TS
Sbjct: 170 TAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSN 229
Query: 68 LSQAGLSHVASATLSQTTSSSVSTNHGPQSHSHHH--QHSHHHHHQTATASPPASAISGS 125
S S H P + S H Q P S
Sbjct: 230 PEPQTEPP------PSQRGPSGSPQHPPSTTSQDQSTTGDGQEHTQRRKTPPATSNRRSP 283
Query: 126 KSRGIGDPIPNHILLSEHKPRPSESQSSSSAQPPSSSPDCHSLP 169
S P PRP+ + S S+ P SS P + P
Sbjct: 284 HSTATPPPTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQANP 327
>gnl|CDD|224237 COG1318, COG1318, Predicted transcriptional regulators
[Transcription].
Length = 182
Score = 27.9 bits (62), Expect = 9.2
Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 444 RRGGGGGGEEEEEEEGEEEEEEKEKKKEKKK--------KKKKKKKKKEEEEEEEEEKKK 495
+ GG E E E+ +E + + + KK K+ ++K + E + E ++
Sbjct: 100 KEGGLDAVEVEIEKLEKEGLKIRWAVEVLKKIKGEHFPMDKELLEEKLKGEVIKGEPLEE 159
Query: 496 MMMMMKKIRRRPKEFLHRI 514
++ ++ P + LH I
Sbjct: 160 VIDKLEYPVESPADLLHEI 178
>gnl|CDD|218585 pfam05424, Duffy_binding, Duffy binding domain. This domain is
found in Plasmodium Duffy binding proteins. Plasmodium
vivax and Plasmodium knowlesi merozoites invade human
erythrocytes that express Duffy blood group surface
determinants. The Duffy receptor family is localised in
micronemes, an organelle found in all organisms of the
phylum Apicomplexa.
Length = 276
Score = 28.5 bits (64), Expect = 9.4
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 456 EEEGEEEEEEKEKKKEKKKKK-KKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
E GEE E++KK EK KKK K+KK K ++ + K K I + KE+
Sbjct: 191 TEWGEEFCRERKKKLEKLKKKCKEKKCNKYCSKKCTKCKNACKKYKKWIDNKKKEW 246
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 28.9 bits (64), Expect = 9.5
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 434 RNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
PE P + G GEE E E+ +E +E KE K + K+ + KK +E + K
Sbjct: 512 EGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSK 571
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 28.3 bits (64), Expect = 9.5
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMM 499
E++ +E E K+ K+K K+ + +E E E +++
Sbjct: 65 RGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLLLT 104
>gnl|CDD|234707 PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.
Length = 64
Score = 26.0 bits (58), Expect = 9.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 467 EKKKEKKKKKKKKKKKKEEEEE 488
EK+K KK +K+++KK EE
Sbjct: 43 EKRKRKKAAARKRRRKKLAREE 64
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 28.2 bits (63), Expect = 9.9
Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 12/106 (11%)
Query: 406 REERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEE 465
E KQ E E + EK + R E EEE E E
Sbjct: 37 ELEEKLKQEEEEAQLLEKKADELEEENRRLEEE------------AAASEEERERLEAEV 84
Query: 466 KEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFL 511
E E K +++++KK+ E + ++E ++ ++ R+ E
Sbjct: 85 DEATAEVAKLEEEREKKEAETRQLQQELREAQEAHERARQELLEAA 130
>gnl|CDD|235202 PRK04023, PRK04023, DNA polymerase II large subunit; Validated.
Length = 1121
Score = 28.7 bits (65), Expect = 9.9
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 434 RNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKK---------KKKKKKKKKKE 484
R+ ER++T R RGG EG + K K K ++ KK+KE
Sbjct: 227 RDLERVETNRIRGGML----LVLAEGIALKAPKILKYVDKLKIDGWEWLEELISGKKEKE 282
Query: 485 EEEEEEEEKKK 495
EEEE+++ K K
Sbjct: 283 EEEEKKKIKPK 293
>gnl|CDD|129200 TIGR00092, TIGR00092, GTP-binding protein YchF. This predicted
GTP-binding protein is found in a single copy in every
complete bacterial genome, and is found in Eukaryotes. A
more distantly related protein, separated from this
model, is found in the archaea. It is known to bind GTP
and double-stranded nucleic acid. It is suggested to
belong to a nucleoprotein complex and act as a
translation factor [Unknown function, General].
Length = 368
Score = 28.2 bits (63), Expect = 10.0
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
E +K+ + KK + K ++EE E ++ ++ R
Sbjct: 138 EFLVEKRIGRSKKSAEGGKDKKEELLLLEIILPLLNGGQMARH 180
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.126 0.369
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,633,916
Number of extensions: 2691693
Number of successful extensions: 30534
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19225
Number of HSP's successfully gapped: 2480
Length of query: 514
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 413
Effective length of database: 6,457,848
Effective search space: 2667091224
Effective search space used: 2667091224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (27.1 bits)