RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1024
(514 letters)
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 53.2 bits (127), Expect = 2e-08
Identities = 15/96 (15%), Positives = 38/96 (39%), Gaps = 29/96 (30%)
Query: 406 REERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEE 465
+ +RL ++ E R+ RE+ +R+ +E + E+E
Sbjct: 76 QADRLTQEPESIRKWREE-----------QRKRL------------QELDAASKVMEQEW 112
Query: 466 KEKKKE------KKKKKKKKKKKKEEEEEEEEEKKK 495
+EK K+ +++ ++ +K K ++ ++
Sbjct: 113 REKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQ 148
Score = 52.1 bits (124), Expect = 6e-08
Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 28/99 (28%)
Query: 413 QAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEK 472
QA+R +E PE I R EE+ + E + K ++E
Sbjct: 76 QADRLTQE---------------PESIRKWR--------EEQRKRLQELDAASKVMEQEW 112
Query: 473 KKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFL 511
++K KK ++ + + E+ EK K R K F
Sbjct: 113 REKAKKDLEEWNQRQSEQVEKNK-----INNRIADKAFY 146
Score = 43.2 bits (101), Expect = 6e-05
Identities = 10/87 (11%), Positives = 30/87 (34%), Gaps = 23/87 (26%)
Query: 401 KLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGE 460
K ++ +RL++ + ++ + +++ EE +
Sbjct: 89 KWREEQRKRLQELDAASKVMEQEWREK-----------------------AKKDLEEWNQ 125
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEE 487
+ E+ EK K + K ++ + +
Sbjct: 126 RQSEQVEKNKINNRIADKAFYQQPDAD 152
Score = 39.4 bits (91), Expect = 0.001
Identities = 9/54 (16%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLHR 513
+ +E E + K +++++K +E + K +K ++ +E+ R
Sbjct: 78 DRLTQEPESIR-----KWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQR 126
Score = 35.9 bits (82), Expect = 0.014
Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 175 QLELEHLEREKREREIRELRERELNDRIKEDLIKNASRPFDPHWLELQRSSLDALRAHAL 234
E E + R+ RE + + L+E + ++ E + ++ W + Q ++ + +
Sbjct: 81 TQEPESI-RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 139
Query: 235 AAA 237
A
Sbjct: 140 IAD 142
Score = 27.8 bits (61), Expect = 6.6
Identities = 12/121 (9%), Positives = 28/121 (23%), Gaps = 48/121 (39%)
Query: 307 SPEPKIEDSECHRSQSAIFLRHWNRGDYNSCCRTDLTFKPVPDSKLARKREERLRKQAEL 366
+ ++ E +R W R + +L + E
Sbjct: 76 QADRLTQEPES--------IRKW-REEQ--------------RKRLQELDAASKVMEQEW 112
Query: 367 KIKLFCPVFLRHWNRGDYNSCCRTDLTFKPVPDSKLARKREERLRKQAEREREEREKAQA 426
+ K + DL + +++ E++ K R +
Sbjct: 113 REKA------------------KKDLE-------EWNQRQSEQVEKNKINNRIADKAFYQ 147
Query: 427 S 427
Sbjct: 148 Q 148
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 54.3 bits (131), Expect = 7e-08
Identities = 27/170 (15%), Positives = 60/170 (35%), Gaps = 18/170 (10%)
Query: 327 RHWNRGDYNSCCRTDLTFKPVPDSKLAR-KREERLRKQAELKIKLFCPVFLRHWNRGDYN 385
+ R Y + + + L R K + LR+ + I+ +L R Y+
Sbjct: 828 MYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLA---RVHYH 884
Query: 386 SCCRTDLTFKPVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRR 445
+ + + +A++ ++L K R E +K + N + + +I
Sbjct: 885 RTLKAIVYLQCCYRRMMAKRELKKL-KIEARSVERYKKLHIGLENKIMQLQRKI------ 937
Query: 446 GGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+E+ +E + E+ + + +K + E EE+ K
Sbjct: 938 -------DEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAK 980
Score = 46.3 bits (110), Expect = 2e-05
Identities = 21/159 (13%), Positives = 53/159 (33%), Gaps = 4/159 (2%)
Query: 352 LARKREERLRK-QAELKIKLFCPVFLRHWNRGDYNSCCRTDLTFKPVPDSKLARKREERL 410
AR LR+ +A + I+ + R Y + + + L R + + +
Sbjct: 805 QARCYATFLRRTRAAIIIQ---KFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMM 861
Query: 411 RKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKK 470
++ + ++ R + I + + E ++ E + KK
Sbjct: 862 LREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKK 921
Query: 471 EKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
+ K + + + +E+ +E K ++ M +
Sbjct: 922 LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYST 960
Score = 43.6 bits (103), Expect = 2e-04
Identities = 14/112 (12%), Positives = 40/112 (35%), Gaps = 9/112 (8%)
Query: 404 RKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE- 462
+++ + K+ + E+ + + + ++ R +EE
Sbjct: 934 QRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEI 993
Query: 463 --------EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
+ + EKK ++ K K + ++ E +E+ + +++ RR
Sbjct: 994 AKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRR 1045
Score = 40.9 bits (96), Expect = 0.001
Identities = 20/108 (18%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 404 RKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEE 463
R ERLR E E + S+ +++ + + + + E++ EE
Sbjct: 966 RSDVERLRMS-EEEAKNATNRVLSLQEEIAKLRKELH-----------QTQTEKKTIEEW 1013
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFL 511
+K K + ++ + K++ + E+EE +++ K+I ++ L
Sbjct: 1014 ADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKL 1061
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 50.4 bits (121), Expect = 1e-06
Identities = 14/181 (7%), Positives = 47/181 (25%), Gaps = 18/181 (9%)
Query: 328 HWNRGDYNSCCRTDLTFKPVPDSKLARKREERLRKQAELKIKLFCPVFLR----HWNRGD 383
H + + + + ++++ + P + + +
Sbjct: 808 HKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAE 867
Query: 384 YNSCCRTDLTFKPVPDSKLARKREERLRKQAEREREEREKAQASM--CNLLSRNPERIDT 441
+ K + ++ R+ K+ E + S + ++ ++
Sbjct: 868 QEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKL-- 925
Query: 442 PRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMK 501
+ E +GE + E + + + + E E+K +
Sbjct: 926 ----------KNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQ 975
Query: 502 K 502
Sbjct: 976 W 976
Score = 35.0 bits (81), Expect = 0.064
Identities = 8/85 (9%), Positives = 20/85 (23%), Gaps = 5/85 (5%)
Query: 401 KLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGE 460
+ + + + N + ER DT + + E
Sbjct: 930 AFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQ-----WTGVKSSAE 984
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEE 485
+ + E+ +K +
Sbjct: 985 TYKNTLLAELERLQKIEDLHHHHHH 1009
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 48.4 bits (115), Expect = 4e-06
Identities = 20/89 (22%), Positives = 40/89 (44%)
Query: 398 PDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEE 457
+ A EE +K+ ++++ + + A + +D R+ E++E +
Sbjct: 23 REEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERD 82
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKKEEE 486
E +E+ + KKKKKKKKK+ +
Sbjct: 83 EDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 42.2 bits (99), Expect = 3e-04
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 449 GGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
G + ++ EEG E+ KK+++KKKK K E+E ++E
Sbjct: 16 GDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGA 62
Score = 38.4 bits (89), Expect = 0.005
Identities = 16/59 (27%), Positives = 24/59 (40%)
Query: 437 ERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E + G ++ EE EE +KK+ KKKK K E+E ++E
Sbjct: 6 EVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASV 64
Score = 33.4 bits (76), Expect = 0.18
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
EE EE +K+++K+KK K ++E ++E ++
Sbjct: 23 REEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEV 67
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 2e-05
Identities = 74/501 (14%), Positives = 129/501 (25%), Gaps = 163/501 (32%)
Query: 104 HSHHHHHQTATASPPASAISGSKSRGIGDPIP------------NHILLSEHKPRP--SE 149
H HHHH T G D + + + P+ S+
Sbjct: 1 HHHHHHMDFET---------GEHQYQYKDILSVFEDAFVDNFDCKDV---QDMPKSILSK 48
Query: 150 SQSSSSAQPPSSSPDCHSLPACLC------------------YQLELEHLEREKREREIR 191
+ + L L Y+ + ++ E+R+ +
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 192 -----ELRERELNDRIKEDLIK-NASRPFDPHWLELQRSSLDALRAHALAAALHSPLPPH 245
E R+R ND + K N SR P+ +L R +L LR
Sbjct: 109 TRMYIEQRDRLYND--NQVFAKYNVSRL-QPYL-KL-RQALLELRPAKNVLI-------D 156
Query: 246 GMAAGHPAFLPPEMGGLPHGLGMPGVDSVKHEALTISG--DEGSMQPEEEEIPSPPHHIP 303
G+ G G K + + + ++ +
Sbjct: 157 GVL----------------GSG-------KT-WVALDVCLSY----KVQCKMDFKIFWLN 188
Query: 304 RGPSPEPKIEDSECHRSQS--AIFLRHWNRGDYNSCCRTDLTFKPVPDSKLARKREERLR 361
C+ ++ + + + D N R+D + + RL
Sbjct: 189 LK----------NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 362 KQAELKIKLFCPVFLRH-WNRGDYNS---CCRTDLT--FKPVPDSKLARKREERLRKQAE 415
K + L + L + N +N+ C+ LT FK V D A
Sbjct: 239 KSKPYENCL---LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 416 REREEREKAQASMCNLLSRN--------PERIDT--PRRRGGGGGGEEEEEEEGEEEEEE 465
E LL + P + T PRR E + +
Sbjct: 296 MTLTPDEVKS-----LLLKYLDCRPQDLPREVLTTNPRRLSIIA---ESIRDGLATWDNW 347
Query: 466 KEKKKEKKKKKKKKKKKKEEEEE--------------------------EEEEKKKMMMM 499
K +K + E E + K +M++
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 500 MKK------IRRRPKEFLHRI 514
+ K + ++PKE I
Sbjct: 408 VNKLHKYSLVEKQPKESTISI 428
Score = 38.3 bits (88), Expect = 0.007
Identities = 45/292 (15%), Positives = 70/292 (23%), Gaps = 96/292 (32%)
Query: 172 LCYQLELEHLEREKREREIRELRERELNDRIKEDLIKNASRP-----FDPHWLELQRSSL 226
L YQ++ R I+ LR + ++ L+K+ +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIK-LRIHSIQAELR-RLLKSKPYENCLLVLLNVQ---NAKAW 259
Query: 227 DAL----------RAHALAAALHSPLPPH-GMAAGHPAFLPPEMGGL-PHGLGMPGVDSV 274
+A R + L + H + P E+ L L +
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-PQDL 318
Query: 275 KHEALTISGDEGSMQPEEEEIPSPPHHIPRGPSPEPKIEDSECHRSQSAIFLRHW-NRGD 333
E LT + P + S A +R D
Sbjct: 319 PREVLTTN----------------PRRL-----------------SIIAESIRDGLATWD 345
Query: 334 YNSCCRTDLTFKPVPDSKLARKREERLRKQ--AELKIKLF--CPVFLRH----------- 378
+K V KL E L AE + K+F VF
Sbjct: 346 N---------WKHVNCDKLTTIIESSLNVLEPAEYR-KMFDRLSVFPPSAHIPTILLSLI 395
Query: 379 WNRGDY-------NSCCRTDLTFKPVPDSKLARKR----EERLRKQAERERE 419
W N + L K K + L+ + E E
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEK---QPKESTISIPSIYLELKVKLENEYA 444
Score = 34.8 bits (79), Expect = 0.079
Identities = 50/383 (13%), Positives = 90/383 (23%), Gaps = 141/383 (36%)
Query: 186 REREIRELRE--RELNDRI-----------KEDLIKNASR--------PFDPHWLELQRS 224
R + +LR+ EL K + + F WL L+
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 225 SLDALRAHALAAALHSPLPPHGMAAGHPAFLPPEMGGLPHGLGMPGVDSVKHEALTISGD 284
+ L L + P+ + + + S++ E +
Sbjct: 193 NSPETVLEML-QKLLYQIDPNWTSRSDHSSNIKL-----------RIHSIQAELRRL--- 237
Query: 285 EGSMQPEEEEIPSPPHHIPRGPSPEPKIEDSECHRSQSAIFLRH-WNRGDYNS---CCRT 340
+ S P+ + L + N +N+ C+
Sbjct: 238 ----------LKSKPY--EN-----------------CLLVLLNVQNAKAWNAFNLSCKI 268
Query: 341 DLT--FKPVPD----------------------------SKLARKREERLRKQAE----L 366
LT FK V D K R + L ++
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 367 KIKLFCPVFLRHW-NRGDYNSCCRTDLTFKPVPDSKLARKREERLRKQAEREREEREKAQ 425
++ + +R D +K V KL E L E +
Sbjct: 329 RLSII-AESIRDGLATWDN---------WKHVNCDKLTTIIESSLNVLEPAEYRKMFDR- 377
Query: 426 ASMCNLLSRNPERIDTPRRR-----GGGGGGEEEEEEEGEEEEEEKEKKK--EKKKKKKK 478
LS P P + + + + K EK+ K+
Sbjct: 378 ------LSVFPPSAHIPTILLSLIWF------DVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 479 K-------KKKKEEEEEEEEEKK 494
+ K + E E +
Sbjct: 426 ISIPSIYLELKVKLENEYALHRS 448
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 45.3 bits (108), Expect = 2e-05
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ E EE EE+E KE+K+ + +EEEEE++ + KK
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKK 257
Score = 44.5 bits (106), Expect = 4e-05
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ E EE EEEE +++KE + ++++EE++ + ++ +K
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEK 260
Score = 43.7 bits (104), Expect = 6e-05
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ E E EEEE K++++ + +++EEE++ + +K +
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVE 259
Score = 43.7 bits (104), Expect = 7e-05
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E EE EEEE KE+K++ + +++++E++ + ++ +K
Sbjct: 218 TETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 41.8 bits (99), Expect = 3e-04
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 436 PERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
P + + + EEEE + E+E+ + E E+++++KK K KK E+ + E
Sbjct: 210 PIYVWSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWE 266
Score = 38.0 bits (89), Expect = 0.005
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
EEE +E +E+ +++ +E++++KK K KK E+ + E
Sbjct: 227 EEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWEL 267
Score = 27.6 bits (62), Expect = 9.5
Identities = 6/30 (20%), Positives = 17/30 (56%)
Query: 466 KEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
K + ++ ++++ KEE+E+ ++E
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAV 244
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 44.7 bits (106), Expect = 3e-05
Identities = 8/49 (16%), Positives = 14/49 (28%)
Query: 447 GGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
GE EE E E ++ K + E+ + +
Sbjct: 185 VQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDN 233
Score = 42.0 bits (99), Expect = 2e-04
Identities = 7/44 (15%), Positives = 13/44 (29%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E + + E +E + + EE + E E
Sbjct: 183 AEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNA 226
Score = 42.0 bits (99), Expect = 2e-04
Identities = 8/43 (18%), Positives = 14/43 (32%)
Query: 446 GGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEE 488
G EE E E + +E K E + + + +
Sbjct: 195 AAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSDAQ 237
Score = 40.5 bits (95), Expect = 7e-04
Identities = 6/57 (10%), Positives = 17/57 (29%)
Query: 439 IDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ PR E + + + ++ + + +E + E E+
Sbjct: 171 VLPPRLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAG 227
Score = 38.2 bits (89), Expect = 0.004
Identities = 6/58 (10%), Positives = 16/58 (27%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
E E E + + + ++ + + EE + E + +
Sbjct: 180 ELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSDAQ 237
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 42.8 bits (101), Expect = 2e-04
Identities = 17/58 (29%), Positives = 34/58 (58%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
+E E+ EE++K +EKK ++KK + K+ + EE +E+++ KK++ +E
Sbjct: 210 TKEVEKEVPIPEEEKKDEEKKDEEKKDEDDKKPKLEEVDEEEEKKPKTKKVKEEVQEI 267
Score = 31.7 bits (72), Expect = 0.60
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 15/75 (20%)
Query: 436 PERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKK---------------K 480
PE + +E++++ EE +E+E+KK K KK K++ +
Sbjct: 220 PEEEKKDEEKKDEEKKDEDDKKPKLEEVDEEEEKKPKTKKVKEEVQEIEELNKTKPLWTR 279
Query: 481 KKKEEEEEEEEEKKK 495
+ +EE K
Sbjct: 280 NPSDITQEEYNAFYK 294
Score = 28.2 bits (63), Expect = 7.9
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 449 GGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEE 486
EE +EE E E+E ++ + K K+ + E+
Sbjct: 527 DFELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEK 564
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 42.9 bits (101), Expect = 2e-04
Identities = 41/190 (21%), Positives = 70/190 (36%), Gaps = 31/190 (16%)
Query: 318 HRSQSAIFLRHWNRGDYNSCCRTD---LTFKPVPDSKLARKREERLRKQAELKIKLFCPV 374
+ +S +++ R + + L F P K+ R+ EE K EL+
Sbjct: 816 QQLESIFCIQYNVRS-FMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQ------- 867
Query: 375 FLRHWNRGDYNSCCRTDLTFKPVPDSKLARKREERLRKQAER--EREEREKAQASMCNLL 432
R R +L K + +E+L+ + E E EE A+ L
Sbjct: 868 --RTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQEL 925
Query: 433 SRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
E E EEEEE ++ + +KKK +++ EE+ EEEE
Sbjct: 926 EEI----------------LHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA 969
Query: 493 KKKMMMMMKK 502
++ + + K
Sbjct: 970 ARQKLQLEKV 979
Score = 39.8 bits (93), Expect = 0.002
Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
Query: 405 KREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGE--------EEEE 456
+ E L +AE R + + +L RI+ R E + E
Sbjct: 902 QAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLE 961
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKK 502
E+ EEEE ++K + +K K KK E++ E++ + +K
Sbjct: 962 EQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERK 1007
Score = 38.7 bits (90), Expect = 0.005
Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 3/106 (2%)
Query: 405 KREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEE 464
+ EE R++ + E+ + M + + ++ + + EE + E
Sbjct: 965 EEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLL--EERVSDLTTNLAE 1022
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEEE-EEEKKKMMMMMKKIRRRPKE 509
E+EK K K K K + E E ++E+K + K R+ E
Sbjct: 1023 EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGE 1068
Score = 37.5 bits (87), Expect = 0.011
Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 5/106 (4%)
Query: 404 RKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEE 463
K + L K + E + L ++ E ++ EE + E+
Sbjct: 1052 EKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKE-----EELQAALARLED 1106
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
E +K KK ++ + + +E+ E EK K+ R +E
Sbjct: 1107 ETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEE 1152
Score = 36.7 bits (85), Expect = 0.023
Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 16/114 (14%)
Query: 401 KLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGE 460
K +++ L +Q E E R+K Q + ++ E++
Sbjct: 951 KKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKI----------------KKMEDDILI 994
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLHRI 514
E++ + KE+K +++ EEEE+ K + + K E R+
Sbjct: 995 MEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRL 1048
Score = 36.4 bits (84), Expect = 0.025
Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 20/114 (17%)
Query: 399 DSKLARKREE--RLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEE 456
++LA+K EE + E E ++ A + L S + +
Sbjct: 1087 KAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHI-----------------SDLQ 1129
Query: 457 EEGEEEEEEKEK-KKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
E+ E E+ + K +K+K+ ++ + K E E+ + + + +
Sbjct: 1130 EDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183
Score = 36.4 bits (84), Expect = 0.027
Identities = 17/109 (15%), Positives = 42/109 (38%), Gaps = 1/109 (0%)
Query: 399 DSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEE 458
+S ++ L+ Q + + K + + L+R + E +
Sbjct: 1068 ESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISD 1127
Query: 459 GEEE-EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
+E+ E EK + + +K+K+ ++ E + E E+ +++R
Sbjct: 1128 LQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGS 1176
Score = 35.2 bits (81), Expect = 0.059
Identities = 11/58 (18%), Positives = 31/58 (53%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
E E ++EEK +++ +K K+K + + + E+ E + ++ + ++ ++ +E
Sbjct: 1039 SMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEE 1096
Score = 30.6 bits (69), Expect = 1.4
Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 9/105 (8%)
Query: 405 KREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEE 464
EE K + + + E + + L + + + + E E + E+
Sbjct: 1021 AEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIK-----RKLEGESSDLHEQ 1075
Query: 465 EKEKKKEKKKKKKKKKKKKEE----EEEEEEEKKKMMMMMKKIRR 505
E + + + K + KK+EE E+E + +KKIR
Sbjct: 1076 IAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRE 1120
Score = 29.0 bits (65), Expect = 4.3
Identities = 14/114 (12%), Positives = 42/114 (36%), Gaps = 11/114 (9%)
Query: 400 SKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEG 459
+ ++ + ER+ E + + L+ E+ + + +
Sbjct: 990 DDILIMEDQNNKLTKERKLLEERVSDLT--TNLAEEEEKAKNL---------TKLKNKHE 1038
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLHR 513
E + + K+++K +++ +K K + E E + + + ++ K L +
Sbjct: 1039 SMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAK 1092
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 41.9 bits (97), Expect = 5e-04
Identities = 13/103 (12%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
+E+ + + E + + + + +N + ++ R +E ++ E+
Sbjct: 481 TLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSY-----QEHLKQLTEKM 535
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRR 505
E ++ + +++++ K +++E+ +E +K+ +M +I+
Sbjct: 536 ENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQD 578
Score = 41.1 bits (95), Expect = 9e-04
Identities = 23/158 (14%), Positives = 59/158 (37%), Gaps = 4/158 (2%)
Query: 354 RKREERLRKQAELKIKLFCPVFLRHWNRGDYNSCCRTDLTFKPVPDSKLARKREERLRKQ 413
++ +E + +++ G Y+ L + + D K E R Q
Sbjct: 397 KQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQ 456
Query: 414 AEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKK 473
AE + K++ SM + + + D E + E + + + ++K
Sbjct: 457 AEEILQTYLKSKESMTDAI----LQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRK 512
Query: 474 KKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFL 511
++ ++K++ +E ++ +KM ++ + + L
Sbjct: 513 NEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTL 550
Score = 40.3 bits (93), Expect = 0.001
Identities = 19/106 (17%), Positives = 45/106 (42%), Gaps = 9/106 (8%)
Query: 401 KLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGE 460
++ R + E + A+ E + K + M E + E+ E +
Sbjct: 490 EVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQ---------LTEKMENDRV 540
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
+ +E+E+ K +++++ K+ ++E K ++ + K+RRR
Sbjct: 541 QLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRR 586
Score = 36.5 bits (83), Expect = 0.022
Identities = 14/95 (14%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 401 KLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGE 460
+ + K ++++ E+ E++E++ L+ E + E+E +
Sbjct: 500 QASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLK------EQERTLALK 553
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+E+E+ K+ +K+ + K + ++ + + +K
Sbjct: 554 LQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRKA 588
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 0.002
Identities = 38/212 (17%), Positives = 61/212 (28%), Gaps = 71/212 (33%)
Query: 110 HQTA-TASPPASAISGSKSRGIGDPIPNHILLSEHKPRPSESQS----SSSAQPPSS--- 161
++ S P S + S G P P +LS + Q ++S P
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSP---MLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 162 -----SPDCHSL---PACLCYQLELEHLEREKREREIRELR----ERELN-----DRIKE 204
+ P L Y L L L + K + + R ER+L +
Sbjct: 368 ISLVNGAKNLVVSGPPQSL-YGLNL-TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV-- 423
Query: 205 DLIKNASRPFDPHWLELQRSSLDALRAHALAAALHSPLPPHGMAAGHPAFLPPEMGGLPH 264
+ PF H S L L A S L + + +F +
Sbjct: 424 ------ASPF--H------SHL-------LVPA--SDLINKDLVKNNVSFNAKD------ 454
Query: 265 GLGMPGVDSVKHEALTISGDEGSMQPEEEEIP 296
+ +P V T G + ++ I
Sbjct: 455 -IQIP----VYD---TFDGSD--LRVLSGSIS 476
Score = 36.6 bits (84), Expect = 0.026
Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 38/140 (27%)
Query: 113 ATASPPASAISGSKSRGIGDPIP--NHILLSEHK-------PRPSESQSSSSAQPPSSSP 163
A ++ P + GS + +P + + S+ + P P+E ++ P++
Sbjct: 3 AYSTRPLTLSHGSLEHVL--LVPTASFFIASQLQEQFNKILPEPTEG--FAADDEPTTPA 58
Query: 164 DCHSLPACLCYQLELEHLEREKREREIRELRERELNDRIKEDLIKNASRPFDPHWLELQR 223
+ L + L ++ ++ + + ++ F+ +L
Sbjct: 59 E-------LVGKF-LGYVSSLVEPSKVGQFDQ----------VLNLCLTEFENCYL---- 96
Query: 224 SSLDALRAHALAAALHSPLP 243
D HALAA L
Sbjct: 97 EGNDI---HALAAKLLQEND 113
Score = 36.2 bits (83), Expect = 0.034
Identities = 18/147 (12%), Positives = 40/147 (27%), Gaps = 45/147 (30%)
Query: 382 GDYNS-CCRTD-LTFKPVPDS-KLARKREERLRKQAEREREEREKAQASMCNLLSRNPER 438
G+Y + D ++ + ++ R + Q R+E ++ M + NP R
Sbjct: 1765 GEYAALASLADVMSIE---SLVEVVFYRGMTM--QVAVPRDELGRSNYGMIAI---NPGR 1816
Query: 439 IDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKE--------------------------- 471
+ +E + E + E
Sbjct: 1817 V-------AASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVL 1869
Query: 472 KKKKKKKKKKKKEEEEEEEEEKKKMMM 498
K +K + ++ EE + +
Sbjct: 1870 NFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 31.9 bits (72), Expect = 0.71
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 17/92 (18%)
Query: 177 ELEHLEREKREREIRE-----LRERELNDRIK-EDLIKNASRPFDPHWLELQRSSLD--- 227
L ++ + IRE + E ++ ++K E + K + + ++ L
Sbjct: 1671 NLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ 1730
Query: 228 ----ALRAHALAA--ALHS--PLPPHGMAAGH 251
AL AA L S +P AGH
Sbjct: 1731 FTQPALTLMEKAAFEDLKSKGLIPADATFAGH 1762
Score = 29.2 bits (65), Expect = 3.7
Identities = 25/147 (17%), Positives = 42/147 (28%), Gaps = 43/147 (29%)
Query: 310 PKIEDSECHRSQSAIFLRHWNRGDYNSCCRTDLTFKPVPDSKLARKREERLRKQAELKIK 369
+ D+ +++ I + + F +S L R E +
Sbjct: 109 LQENDTTLVKTKELI------KNYITARIMAKRPFDKKSNSAL-------FRAVGEGNAQ 155
Query: 370 LFCPVF------------LRHWNRGDYNSCCRTDLTFKPVPDSKLARKREERLRKQAERE 417
L +F LR Y T+ + L + E L + R
Sbjct: 156 LV-AIFGGQGNTDDYFEELRDL----YQ-------TYHVLVGD-LIKFSAETLSELI-RT 201
Query: 418 REEREKAQASMCNLLS--RNPERIDTP 442
+ EK N+L NP +TP
Sbjct: 202 TLDAEKVFTQGLNILEWLENPS--NTP 226
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 39.9 bits (92), Expect = 0.002
Identities = 16/101 (15%), Positives = 34/101 (33%)
Query: 395 KPVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEE 454
+S+ + ++ + + EKA+ + +P + +
Sbjct: 36 LVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAK 95
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EE+ E E + K K K+ + K E + +E K
Sbjct: 96 PEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPA 136
Score = 33.4 bits (75), Expect = 0.23
Identities = 6/58 (10%), Positives = 18/58 (31%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
E + E+ + + + + + EE+ +++ +PK
Sbjct: 59 ENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKS 116
Score = 33.0 bits (74), Expect = 0.31
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 2/87 (2%)
Query: 412 KQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEE--EEKEKK 469
E + E+ E + + E T EE+ E E E + K
Sbjct: 56 HARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPK 115
Query: 470 KEKKKKKKKKKKKKEEEEEEEEEKKKM 496
+K+ + K + + +E + E K
Sbjct: 116 SDKETEAKPEATNQGDESKPAAEANKT 142
Score = 28.4 bits (62), Expect = 7.8
Identities = 9/64 (14%), Positives = 20/64 (31%)
Query: 101 HHQHSHHHHHQTATASPPASAISGSKSRGIGDPIPNHILLSEHKPRPSESQSSSSAQPPS 160
HH H H HHHQ + ++ G + + +++ + +
Sbjct: 3 HHHHHHGHHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKL 62
Query: 161 SSPD 164
+
Sbjct: 63 EKAE 66
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 39.8 bits (92), Expect = 0.002
Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Query: 403 ARKREERLR----KQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEE 458
AR R ER + +AE+ R+E + +A + S + + R E E
Sbjct: 684 ARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESR-------AEAARIE 736
Query: 459 GEEEEEEKEKKKEKKKKKK---KKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
GE + + K + + ++ KK E E + ++ + + K ++
Sbjct: 737 GEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQL 787
Score = 36.3 bits (83), Expect = 0.026
Identities = 11/105 (10%), Positives = 34/105 (32%)
Query: 401 KLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGE 460
+L + ++ + +++A + + + E E E +
Sbjct: 705 ELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKK 764
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRR 505
E E + + + + K ++ E ++ ++ + IR
Sbjct: 765 VREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRD 809
Score = 35.6 bits (81), Expect = 0.041
Identities = 17/112 (15%), Positives = 32/112 (28%)
Query: 398 PDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEE 457
P + R +R + A ++A A R R++ E+ +
Sbjct: 645 PVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARK 704
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
E E E + K + + + E E E + + E
Sbjct: 705 ELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETE 756
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 38.7 bits (90), Expect = 0.004
Identities = 11/52 (21%), Positives = 30/52 (57%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIR 504
E EE+ + KEK ++++ +K++K+++ + E +E M +++ ++
Sbjct: 387 RETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDETGVMDSLLEALQ 438
Score = 33.3 bits (76), Expect = 0.19
Identities = 11/32 (34%), Positives = 23/32 (71%)
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+E +K++E ++K ++ K KE+ E+E EK++
Sbjct: 381 KENQKRRETEEKMRRAKLAKEKAEKERLEKQQ 412
Score = 29.8 bits (67), Expect = 2.5
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
++ E E+K + K K+K +K+ E++++ E+ M
Sbjct: 383 NQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDM 420
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 38.0 bits (88), Expect = 0.005
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 4/98 (4%)
Query: 417 EREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEK----KKEK 472
EE A+ + D G + +++ + E +EK + +
Sbjct: 60 NAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQY 119
Query: 473 KKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
+ K K +EE K+ + K+ R PK+F
Sbjct: 120 VVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQF 157
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right
handed coiled-coil, ATPase/SY ATP binding, membrane,
hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E
3j0j_J
Length = 187
Score = 36.0 bits (83), Expect = 0.012
Identities = 7/54 (12%), Positives = 23/54 (42%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
+ +E E + E +++ E+K K + +++ E + ++ + +
Sbjct: 16 QALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVAT 69
Score = 34.5 bits (79), Expect = 0.047
Identities = 7/54 (12%), Positives = 20/54 (37%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRR 505
E + E E EE+ + + +++ + + + E + + + R
Sbjct: 23 EAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARG 76
Score = 32.6 bits (74), Expect = 0.16
Identities = 9/63 (14%), Positives = 24/63 (38%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFL 511
+E E + + E +EK K + +++ + + E +++ + E L
Sbjct: 20 QEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVL 79
Query: 512 HRI 514
+
Sbjct: 80 EEV 82
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics,
NPPSFA, national project on P structural and functional
analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1
PDB: 2dma_A 4dt0_A
Length = 198
Score = 35.7 bits (82), Expect = 0.015
Identities = 11/58 (18%), Positives = 27/58 (46%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
E ++ E+ +EE + E K + ++ K + E E++ + +++ R +E
Sbjct: 23 LNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANARLEVRRKRLAIQE 80
Score = 33.0 bits (75), Expect = 0.15
Identities = 12/64 (18%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEE--EEEEEEKKKMMMMMKKIRRRPKE 509
E + E E ++ EK KE+ ++ + K + + + E +K+ ++ ++ R K
Sbjct: 16 ERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANARLEVRRKR 75
Query: 510 FLHR 513
+
Sbjct: 76 LAIQ 79
Score = 32.3 bits (73), Expect = 0.23
Identities = 8/47 (17%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 452 EEEEEEEGEE--EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
+E E + E E ++ +K K++ ++ + K E + + ++
Sbjct: 12 NKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAEL 58
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 35.7 bits (81), Expect = 0.020
Identities = 11/55 (20%), Positives = 26/55 (47%)
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFL 511
EE + +E + + +++ ++K KK+ EE + + +++ R K F
Sbjct: 107 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFY 161
Score = 31.8 bits (71), Expect = 0.36
Identities = 17/94 (18%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 399 DSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEE 458
D A + +RL ++ E R+ RE+ + R E + +E E+
Sbjct: 84 DGYAAIAQADRLTQEPESIRKWREEQRK-------RLQELDAASKVME-----QEWREKA 131
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
++ EE +++ E+ +K K + ++ ++ +
Sbjct: 132 KKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 165
Score = 31.4 bits (70), Expect = 0.54
Identities = 9/50 (18%), Positives = 24/50 (48%)
Query: 446 GGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
G G + + +E E +K ++++K+ ++ + E+E ++K
Sbjct: 81 GPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREK 130
Score = 29.5 bits (65), Expect = 2.2
Identities = 8/78 (10%), Positives = 29/78 (37%)
Query: 436 PERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E + + + ++ ++ + +K +++++K +E + K
Sbjct: 64 SEDMGATVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVM 123
Query: 496 MMMMMKKIRRRPKEFLHR 513
+K ++ +E+ R
Sbjct: 124 EQEWREKAKKDLEEWNQR 141
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 36.4 bits (84), Expect = 0.020
Identities = 11/110 (10%), Positives = 34/110 (30%), Gaps = 17/110 (15%)
Query: 404 RKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEE 463
K +++ + + + E+ + + + +E E
Sbjct: 162 EKCYQKMGEIVKEYEKRLERIEGELNYKEES-----------------LKARLKEMSNLE 204
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLHR 513
+EKEK + + K ++ + ++K + +++K
Sbjct: 205 KEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDL 254
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 36.3 bits (83), Expect = 0.024
Identities = 18/92 (19%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 423 KAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKK 482
+A A +CN R P + + ++E+ + + K K + K K K KK
Sbjct: 450 RAVAILCNH-QRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKK 508
Query: 483 KEEEEEEEEEKKKMMMMMKKIRRRPKEFLHRI 514
E +++ ++ + +M +++ +E +I
Sbjct: 509 VVESKKKAVQRLEEQLMKLEVQATDREENKQI 540
Score = 33.2 bits (75), Expect = 0.20
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 467 EKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
+ + E +K+ K++K K +EE E+ K+ +M + R F
Sbjct: 136 KAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANF 179
Score = 33.2 bits (75), Expect = 0.22
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
+ K K K+KK + KKKK ++EEE++ K
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQKWK 30
Score = 32.0 bits (72), Expect = 0.46
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEE 490
+ + E +K+ K++K K K++ E+ +E
Sbjct: 136 KAQTEARKQMSKEEKLKIKEENEKLLKE 163
Score = 32.0 bits (72), Expect = 0.52
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 466 KEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
K K K+K KK + KK++ ++EEE+K K
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQKWK 30
Score = 30.9 bits (69), Expect = 1.0
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
+ + K + KK + KKK+ ++EEE++ K
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQKWK 30
Score = 30.9 bits (69), Expect = 1.1
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEE-----EEEKKK 495
+ + + K +K + KKKK ++EEE+ EEE+
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYP 38
Score = 28.6 bits (63), Expect = 5.9
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEE 486
+ E K+ KE+K K K++ +K +E
Sbjct: 137 AQTEARKQMSKEEKLKIKEENEKLLKE 163
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 35.9 bits (83), Expect = 0.024
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
+E +K++E ++K ++ K KE+ E+E EK+
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 34.3 bits (79), Expect = 0.073
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKK 483
+E ++ E EE+ + K K+K +K++ +K+
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 34.0 bits (78), Expect = 0.093
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKK 481
E ++ E EE+ + KEK +K++ +K+
Sbjct: 311 ENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 34.0 bits (78), Expect = 0.096
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKE 484
+E ++ E EE+ + K K+K +K++ +K+
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.4 bits (74), Expect = 0.30
Identities = 8/31 (25%), Positives = 20/31 (64%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEE 485
+E + E EEK ++ + K+K +K++ +++
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 31.6 bits (72), Expect = 0.50
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
+E +K ++ E+K ++ K K+K E+E E++
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 31.6 bits (72), Expect = 0.54
Identities = 9/31 (29%), Positives = 21/31 (67%)
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
+E +++ + +EK ++ K K+K E+E E++
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 31.3 bits (71), Expect = 0.66
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEE 487
+E ++ E +EK + K K+K +K++ E++
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 31.3 bits (71), Expect = 0.73
Identities = 7/31 (22%), Positives = 21/31 (67%)
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
++ +K+ + ++K ++ K +E+ E+E +K+
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 30.9 bits (70), Expect = 0.98
Identities = 7/31 (22%), Positives = 19/31 (61%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKK 482
+E ++ EE+ + K ++K +K++ +K+
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 30.5 bits (69), Expect = 1.4
Identities = 8/31 (25%), Positives = 20/31 (64%)
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKKKKKEEE 486
+E + E E++ ++ K K+K +K++ E++
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 29.3 bits (66), Expect = 2.7
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEE 488
++ E E+K + K K+K +K+ E++
Sbjct: 312 NQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 28.9 bits (65), Expect = 3.5
Identities = 7/31 (22%), Positives = 21/31 (67%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEE 490
+E ++ +E +++ ++ K K+K ++E E++
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_B
Length = 241
Score = 35.6 bits (82), Expect = 0.027
Identities = 8/70 (11%), Positives = 30/70 (42%)
Query: 423 KAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKK 482
++ + + +++R + + + + E+++ +E++ + ++K
Sbjct: 165 ESISMIYWMIAREVKILRGELSKDEEWEVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKV 224
Query: 483 KEEEEEEEEE 492
E +E E E+
Sbjct: 225 AEVKEGEAEQ 234
Score = 33.3 bits (76), Expect = 0.12
Identities = 9/41 (21%), Positives = 21/41 (51%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
+ E++E E+E+ E ++K + K+ E E+ + +
Sbjct: 199 YHKTLPTAEQKEAEEEEGAEGAEEKVAEVKEGEAEQNTDNK 239
Score = 31.0 bits (70), Expect = 0.81
Identities = 7/41 (17%), Positives = 20/41 (48%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
+ ++E EE+E + ++K + K+ + E+ + +
Sbjct: 200 HKTLPTAEQKEAEEEEGAEGAEEKVAEVKEGEAEQNTDNKN 240
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 35.4 bits (81), Expect = 0.028
Identities = 10/80 (12%), Positives = 21/80 (26%), Gaps = 6/80 (7%)
Query: 416 REREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKK 475
R + Q L+ + I+ G + + E+ K+
Sbjct: 185 RAEGSNQDDQVK--ELM----DCIEDLLMEKNGDHYTNGLYSLIQRSKCGPVGSDERVKE 238
Query: 476 KKKKKKKKEEEEEEEEEKKK 495
K+ K E + +
Sbjct: 239 FKQSLIKYMETQRSYTALAE 258
Score = 33.5 bits (76), Expect = 0.13
Identities = 4/39 (10%), Positives = 14/39 (35%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMK 501
+ K ++ K+ K+ + E ++ + +
Sbjct: 220 SLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAE 258
Score = 28.5 bits (63), Expect = 5.0
Identities = 6/37 (16%), Positives = 14/37 (37%)
Query: 473 KKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
++ K +E +E K+ ++ M+ R
Sbjct: 220 SLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTAL 256
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear
protein complex, chromatin remodeling nucleosome
remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Length = 374
Score = 35.9 bits (82), Expect = 0.029
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 12/90 (13%)
Query: 405 KREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEE 464
+R L + E+E + R + G+ EE ++
Sbjct: 283 RRGNTLLQCLEKEFNAGIVL------------DDATKDRMKKEDENGKRIREEFADQTAN 330
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
EKE + KK K + E+ +K
Sbjct: 331 EKENVDGVESKKAKIEDTSNVGTEQLVAEK 360
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 36.0 bits (83), Expect = 0.030
Identities = 11/57 (19%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 453 EEEEEEGEEEEEEKEKKK--EKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRP 507
+E E +++EEE+ + + + K+++++++K + +E EE + ++ +R
Sbjct: 393 QENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDDLVSALRSGE 449
Score = 29.9 bits (67), Expect = 2.3
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 474 KKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPK 508
+ K++ + +++EEEE + +M +K+ R R +
Sbjct: 389 SEAKQENENMRKKKEEEERRARMEAQLKEQRERER 423
>1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous
protein, LIPO-polysaccharide binding, bacteriophage
structural protein; HET: CIT; 1.5A {Bacteriophage T4}
SCOP: d.231.1.1
Length = 198
Score = 35.1 bits (80), Expect = 0.031
Identities = 7/99 (7%), Positives = 19/99 (19%)
Query: 4 HHHSSSSVTTRMREEDAQEIMHHSSHHSSSVHHHSEHSKQTISHSTSSSATSVQHKMKRG 63
S +T + Q + + +Q H + G
Sbjct: 73 GSGRGSHLTNPNVNGNDQFGKPRLGVGCTGGYVGEVQKQQMSYHKHAGGFGEYDDSGAFG 132
Query: 64 TSPALSQAGLSHVASATLSQTTSSSVSTNHGPQSHSHHH 102
+ + G ++ + +
Sbjct: 133 NTRRSNFVGTRKGLDWDNRSYFTNDGYEIDPASQRNSRY 171
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 35.6 bits (81), Expect = 0.036
Identities = 17/98 (17%), Positives = 37/98 (37%)
Query: 417 EREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKK 476
E K A N + N + + E E ++ E + ++ + K K
Sbjct: 288 ENYRSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVK 347
Query: 477 KKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLHRI 514
+K +K K+ E E + ++M ++ + +E +
Sbjct: 348 EKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQF 385
Score = 33.6 bits (76), Expect = 0.14
Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
Query: 415 EREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKK 474
E R + A ++N ++ E + + E E ++ + K K
Sbjct: 288 ENYRSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVK 347
Query: 475 KKKKKKKKKEEE--EEEEEEKKKMMMMMKKIRRRPKEF 510
+K +K K E E E+ KK + K++ + ++F
Sbjct: 348 EKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQF 385
Score = 33.3 bits (75), Expect = 0.19
Identities = 15/112 (13%), Positives = 44/112 (39%), Gaps = 12/112 (10%)
Query: 390 TDLTFKPVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGG 449
D +K + E R++ + ++ E + + + +
Sbjct: 303 VDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLK-------- 354
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMK 501
+ E E + E+ +K E + K+ ++K+++ E+E+ E ++ ++ +
Sbjct: 355 ----DSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQ 402
Score = 27.9 bits (61), Expect = 8.8
Identities = 15/98 (15%), Positives = 41/98 (41%), Gaps = 8/98 (8%)
Query: 399 DSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEE 458
+K+ + E + + +E+ +K + S L R+ + + +E E
Sbjct: 328 VAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLE--------AQHKELE 379
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
+ + E EK + +++ +++ E+ ++K K+
Sbjct: 380 EKRRQFEDEKANWEAQQRILEQQNSSRTLEKNKKKGKI 417
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 35.3 bits (81), Expect = 0.040
Identities = 14/121 (11%), Positives = 34/121 (28%), Gaps = 9/121 (7%)
Query: 383 DYNSCCRTDLTFKPVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTP 442
+ + + +K+ E R ++ + + L+R
Sbjct: 94 NLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERE- 152
Query: 443 RRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKK 502
E EE + E E+ + ++ + K K + +E + +
Sbjct: 153 --------RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRD 204
Query: 503 I 503
I
Sbjct: 205 I 205
>2jes_A Portal protein; DNA translocation, molecular motor, VIRA protein,
viral protein; 3.4A {Bacteriophage SPP1}
Length = 503
Score = 35.6 bits (81), Expect = 0.041
Identities = 24/148 (16%), Positives = 43/148 (29%), Gaps = 21/148 (14%)
Query: 349 DSKLARKREERLRKQAELKIKLFCPVFLRHWNRGDYNSCCRTDLTFKP-VPDSKLARKRE 407
L ER + F +LR+ +GD+N +TF +
Sbjct: 369 LLDLKANMAERKIRAGLRLFFWFFAEYLRNTGKGDFNPDKELTMTFTRTRIQNDSE---- 424
Query: 408 ERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKE 467
+ + S ++RNP + P EEE EEE +
Sbjct: 425 -----IVQSLVQGVTGGIMSKETAVARNP-FVQDP----------EEELARIEEEMNQYA 468
Query: 468 KKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ + + EE++ +
Sbjct: 469 EMQGNLLDDEGGDDDLEEDDPNAGAAES 496
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 34.8 bits (79), Expect = 0.050
Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 10/116 (8%)
Query: 380 NRGDYNSCCRTDLTFKPVPDSKLARKREERLRKQAEREREEREKAQ--ASMCNLLSRNPE 437
NRG +N R P P + +R + R + Q ++ L+
Sbjct: 2 NRGFFNMLGRRPF---PAPTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQAT 58
Query: 438 RIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
R PR R ++++ ++ + +K K ++KKKK+ K K + + K
Sbjct: 59 RPQNPRPRP-----PPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALK 109
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Length = 197
Score = 34.3 bits (79), Expect = 0.057
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
++ EE E E E E+ + +K + + E + E +
Sbjct: 20 DQHEEIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTRERDG 61
Score = 33.1 bits (76), Expect = 0.12
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMM---MKKIRRR 506
++ EE E E E ++ + +K + + E + E+ ++ + M+ +RRR
Sbjct: 18 IMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTRERDGILRVKAEMENLRRR 75
Score = 31.6 bits (72), Expect = 0.36
Identities = 7/62 (11%), Positives = 28/62 (45%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFL 511
+E++ + EE + ++ + + + E+ + +E+ + + + + R ++ +
Sbjct: 3 SKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTRERDGI 62
Query: 512 HR 513
R
Sbjct: 63 LR 64
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 34.3 bits (79), Expect = 0.060
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMM---MKKIRRR 506
EE GEE E EK ++ K + E E + E + + + + + RRR
Sbjct: 38 VPLEEAGGEEAAEPAEKAPTAEELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRR 95
Score = 33.2 bits (76), Expect = 0.14
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+E E + EEE + E++ ++ EE E EK
Sbjct: 13 TYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAP 56
Score = 32.4 bits (74), Expect = 0.20
Identities = 8/44 (18%), Positives = 18/44 (40%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E+ + E E+ E++ + +++ EE EE +
Sbjct: 9 MEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPA 52
Score = 32.0 bits (73), Expect = 0.29
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+E E E EEE + +E+ ++ EE E E+
Sbjct: 14 YDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPT 57
Score = 31.6 bits (72), Expect = 0.43
Identities = 8/44 (18%), Positives = 18/44 (40%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E+ E E E+ +++ + +++ EE EE +
Sbjct: 8 VMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEP 51
Score = 31.2 bits (71), Expect = 0.49
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EEE EE E+ E +K ++ + + E + K
Sbjct: 31 PEEESGGVPLEEAGGEEAAEPAEKAPTAEELAAAKAQIAELEAK 74
Score = 31.2 bits (71), Expect = 0.53
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EEE + EEE ++ ++ + +K EE K +
Sbjct: 24 EEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELAAAKAQ 67
Score = 31.2 bits (71), Expect = 0.57
Identities = 8/44 (18%), Positives = 18/44 (40%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ EEE G EE ++ + +K ++ + + E +
Sbjct: 30 QPEEESGGVPLEEAGGEEAAEPAEKAPTAEELAAAKAQIAELEA 73
Score = 30.9 bits (70), Expect = 0.73
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ EEE + EEE ++ ++ + E+ EE
Sbjct: 21 QPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELAAA 64
Score = 30.5 bits (69), Expect = 0.86
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EEE EEE +E ++ + +K EE K
Sbjct: 23 IEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELAAAKA 66
Score = 30.5 bits (69), Expect = 0.93
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EEE + EEE E+ ++ + ++ EE K
Sbjct: 22 PIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELAAAK 65
Score = 30.1 bits (68), Expect = 1.3
Identities = 9/44 (20%), Positives = 16/44 (36%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EE EE E+ + +K ++ + + E E K
Sbjct: 33 EESGGVPLEEAGGEEAAEPAEKAPTAEELAAAKAQIAELEAKLS 76
Score = 29.7 bits (67), Expect = 1.8
Identities = 7/34 (20%), Positives = 19/34 (55%)
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E+ EK+ ++ + ++++ EEE + E++
Sbjct: 2 EQGEKQVMEQATYDEPEREQPIEEEAAPQPEEES 35
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces
cerevisiae}
Length = 1219
Score = 35.2 bits (81), Expect = 0.062
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKK---EEEEEEEEEKKKMM 497
E EE E G + E +E++ +++ K KKK ++ + E+ KK +M
Sbjct: 30 ENEELENGNDNNEAEEEEIDEETGAIKSTKKKISLQDIYDLEDLKKNLM 78
>2w4s_A Ankyrin-repeat protein; RNA transport, structural protein; 2.45A
{Cryptosporidium parvum}
Length = 113
Score = 32.7 bits (74), Expect = 0.064
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 11/55 (20%)
Query: 440 DTPRRRGGGG-----------GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKK 483
D RR+ GG + +E +EEKE+ K K+ ++ +
Sbjct: 58 DMSRRKTIGGVFCYLLKQLVAEDQITIQEWNYIRQEEKERINAKNILKRNNRRCQ 112
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET:
GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP:
c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Length = 315
Score = 34.6 bits (79), Expect = 0.068
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 101 HHQHSHHHHHQTATASPPASA 121
HH H HHHHH + A
Sbjct: 3 HHHHHHHHHHSSGHIEGRHMA 23
Score = 32.3 bits (73), Expect = 0.35
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 100 HHHQHSHHHHHQTATASPPAS 120
HHH H HHHH +
Sbjct: 3 HHHHHHHHHHSSGHIEGRHMA 23
Score = 28.1 bits (62), Expect = 6.3
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 104 HSHHHHHQTATASPPASAISG 124
H HHHHH ++
Sbjct: 3 HHHHHHHHHHSSGHIEGRHMA 23
>1yz1_A Translationally controlled tumor protein; unknown function; 2.00A
{Homo sapiens} SCOP: b.88.1.2 PDB: 2hr9_A 3ebm_A
Length = 174
Score = 33.7 bits (77), Expect = 0.074
Identities = 21/102 (20%), Positives = 30/102 (29%), Gaps = 22/102 (21%)
Query: 429 CNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKE--------------KKKEKKK 474
++SR ID GG E E EG E K+ KK
Sbjct: 35 GKMVSRTEGNIDDSL--IGGNASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKK 92
Query: 475 ------KKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
K K K +++ E + +K I K +
Sbjct: 93 YIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNY 134
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 34.1 bits (78), Expect = 0.079
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 423 KAQASMCNLLSRNPERI-DTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKK 481
+ + LL+R R+ R + + EE E++ +E ++ +++
Sbjct: 168 HSIGLIWYLLAREVLRLRGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEE 227
Query: 482 KKEEEEEEEEEK 493
KEE EE+ E
Sbjct: 228 AKEEVTEEQAEA 239
Score = 31.8 bits (72), Expect = 0.47
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
EE E++ EE E+ ++E K++ +++ + E EE +
Sbjct: 208 EEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEWAEENADN 249
Score = 30.7 bits (69), Expect = 1.0
Identities = 9/40 (22%), Positives = 21/40 (52%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
+ EE E++ E+ +E +++ K++ +E+ E E
Sbjct: 203 FYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEW 242
Score = 30.3 bits (68), Expect = 1.2
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
+ EE E+ EE E+ E++ K++ +++ E E EE
Sbjct: 206 DPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEWAEENA 247
Score = 30.3 bits (68), Expect = 1.2
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
+ EE E + EE ++ +++ K++ +++ E E EE
Sbjct: 205 RDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEWAEE 245
Score = 29.1 bits (65), Expect = 3.2
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
E++ EE EE +E+ KE+ +++ + + EE + E
Sbjct: 211 EQQVAEEATTEEAGEEEAKEEVTEEQAEATEWAEENADNVE 251
Score = 28.0 bits (62), Expect = 8.0
Identities = 8/42 (19%), Positives = 22/42 (52%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
+ EE ++ EE ++ +++ K++ +++ E E E+
Sbjct: 204 YRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEWAEE 245
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 34.2 bits (78), Expect = 0.083
Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 4/92 (4%)
Query: 83 QTTSSSVSTNHGPQSHSHHHQHSHHHHHQTATASPPASAISGSKSRG-IGDPIPNHILLS 141
++ ++ S + + A PP I +P H L
Sbjct: 8 SQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQ 67
Query: 142 ---EHKPRPSESQSSSSAQPPSSSPDCHSLPA 170
+ PS + S P +SSP+ +
Sbjct: 68 GYQTYGHFPSRAIKSEYPDPYTSSPESIMGYS 99
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 32.3 bits (74), Expect = 0.089
Identities = 7/38 (18%), Positives = 15/38 (39%)
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
G +E E + K+ +K+E ++ + E
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 31.5 bits (72), Expect = 0.20
Identities = 5/32 (15%), Positives = 13/32 (40%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
+E + E K+ +K E ++ + +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 30.4 bits (69), Expect = 0.40
Identities = 4/29 (13%), Positives = 12/29 (41%)
Query: 467 EKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
++ + + K+ E+ E ++ K
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKG 108
Score = 30.0 bits (68), Expect = 0.59
Identities = 3/32 (9%), Positives = 13/32 (40%)
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+E + + K+ ++ E ++ + +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 27.3 bits (61), Expect = 5.6
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKK 483
+E E E + EK++ KK K +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 34.6 bits (78), Expect = 0.090
Identities = 33/226 (14%), Positives = 59/226 (26%), Gaps = 20/226 (8%)
Query: 45 ISHSTSSSATSVQHKMKRGTSPALSQAGLSHVASATLSQTTSSSVSTNHGPQSHSHHHQH 104
+S +++A + GT AG S S +Q S GP +
Sbjct: 2 LSGKKAAAAAAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPR 61
Query: 105 --SHHHHHQTATASPPASAISGSKSRGIGDPIPNHILLSEHKPRPSESQSSSSAQPPSSS 162
+ P + + + + P ++S +
Sbjct: 62 KKEPPRASPPGGLAEPPGSAGPQAGPTVVPG-SATPMETGIAETPEGRRTSRRKRAKVEY 120
Query: 163 PDCHSLPACLCYQLELEHLEREKREREIRELRERELNDRIKEDLIKNASRPFDPHWLELQ 222
+ + L E E+ E+R + + K P E +
Sbjct: 121 RE---MDESLANLSEDEYYSEEERNAKAEKE--------------KKLPPPPPQAPPEEE 163
Query: 223 RSSLDALRAHALAAALHSPLPPHGMAAGHPAFLPPEMGGLPHGLGM 268
S + AA S LP M + A P + G +
Sbjct: 164 NESEPEEPSGVEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKV 209
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 34.3 bits (79), Expect = 0.092
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 448 GGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
G +E E++ KK+KK+ + KKK + E + M
Sbjct: 461 PPGLQELIPFVKPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNM 509
Score = 32.8 bits (75), Expect = 0.28
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 449 GGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
G +E + E+E K++KK+ + KKK + E + + M
Sbjct: 461 PPGLQELIPFVKPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNM 509
Score = 28.5 bits (64), Expect = 5.2
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 447 GGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
G E + E+E KK++K+ + KKK + E
Sbjct: 461 PPGLQELIPFVKPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENR 505
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 33.8 bits (78), Expect = 0.10
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 7/34 (20%)
Query: 105 SHHHHHQTATASPPASAISGSK-------SRGIG 131
SHHHHH ++ P S +S + S GIG
Sbjct: 4 SHHHHHHSSGLVPRGSHMSRPQTAFVTGVSSGIG 37
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 33.7 bits (78), Expect = 0.11
Identities = 3/36 (8%), Positives = 16/36 (44%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEE 487
+ ++ + + + ++ KK + +K+ ++
Sbjct: 241 DIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKKVKK 276
Score = 32.2 bits (74), Expect = 0.33
Identities = 4/37 (10%), Positives = 16/37 (43%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEE 488
+ ++ + + K +E KK + +++ ++
Sbjct: 240 ADIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKKVKK 276
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 34.0 bits (77), Expect = 0.13
Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 17/99 (17%)
Query: 398 PDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEE 457
KR E L + ++E E R+ + + +E E+
Sbjct: 320 LQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAE-----------------LKEAEK 362
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
E E+ + +K + +KKK + KKK ++E +++K
Sbjct: 363 ELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKT 401
Score = 32.4 bits (73), Expect = 0.34
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEE--EEEEEEKKKMMMMMKKIRRRPKE 509
E E ++EEE ++ ++ K+K+ + K+ E+E E+ + KK KK+ + K
Sbjct: 329 NEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKS 388
Query: 510 F 510
Sbjct: 389 L 389
Score = 30.9 bits (69), Expect = 1.1
Identities = 15/107 (14%), Positives = 44/107 (41%), Gaps = 12/107 (11%)
Query: 399 DSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEE 458
+L +K EE + +R +E+ + + + L + +R+ + ++E+
Sbjct: 332 LGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKF-DRLK-----------KLHQDEK 379
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRR 505
+ E+++K E K++K + + + + + K ++
Sbjct: 380 KKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDKEKK 426
Score = 30.5 bits (68), Expect = 1.6
Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEE---EEEEEKKKMMMMMKKIRRRPKE 509
+++EEE + ++ K+KE + K+ +K+ ++ + ++EKKK+ K +
Sbjct: 336 QKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNA 395
Query: 510 FLHR 513
F R
Sbjct: 396 FKQR 399
Score = 30.1 bits (67), Expect = 2.0
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
E + E E ++KE++ + ++ K+K+ E +E E+E +K + K + K+
Sbjct: 325 EAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKK 381
Score = 28.6 bits (63), Expect = 5.8
Identities = 10/55 (18%), Positives = 31/55 (56%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
+ E +++EE+ ++ ++ K+K+ + KE E+E E+ ++ + + +++
Sbjct: 327 KRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKK 381
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 33.9 bits (77), Expect = 0.15
Identities = 8/63 (12%), Positives = 27/63 (42%)
Query: 433 SRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
+++ + +E+++ + +EE ++++ +K+K +E+E
Sbjct: 563 AKSITNGSDDGAQPSTSTAQEQDDVLIVDSDEEDSSNNADVSEEERSRKRKLDEKENLSA 622
Query: 493 KKK 495
K+
Sbjct: 623 KRS 625
Score = 33.2 bits (75), Expect = 0.24
Identities = 8/58 (13%), Positives = 28/58 (48%)
Query: 440 DTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
D + E+++ + +EE+ + ++++ +K+K +E+E ++ ++
Sbjct: 571 DDGAQPSTSTAQEQDDVLIVDSDEEDSSNNADVSEEERSRKRKLDEKENLSAKRSRIE 628
Score = 30.9 bits (69), Expect = 1.3
Identities = 6/63 (9%), Positives = 26/63 (41%)
Query: 433 SRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
+ + +E+++ + +E++ ++++ +K++ +E+E
Sbjct: 562 AAKSITNGSDDGAQPSTSTAQEQDDVLIVDSDEEDSSNNADVSEEERSRKRKLDEKENLS 621
Query: 493 KKK 495
K+
Sbjct: 622 AKR 624
Score = 28.2 bits (62), Expect = 9.2
Identities = 16/115 (13%), Positives = 41/115 (35%), Gaps = 5/115 (4%)
Query: 383 DYNSCCRTDLTFKPVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTP 442
D+ + D + E + ++ E A S+ N + +
Sbjct: 521 DFLQDYTLLINILHSEDLGKDVEFEVVGDAPEKVGPKQAEDAAKSITNGSDDGAQPSTST 580
Query: 443 RRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKK-----KKKKKKKKEEEEEEEEE 492
+ + +EE+ + E+++ +K+K K+ + E++EE ++
Sbjct: 581 AQEQDDVLIVDSDEEDSSNNADVSEEERSRKRKLDEKENLSAKRSRIEQKEELDD 635
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA
synthetase, ATP-binding, ligas nucleotide-binding,
protein biosynthesis; NMR {Brugia malayi}
Length = 113
Score = 31.9 bits (72), Expect = 0.15
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 452 EEEEEEEGEEEEEEKEKKKEK-----KKKKKKKKKKKEEEEEEEEEKKKMMMMMKKI 503
+++ ++ E + KK K K +K K E++ E K + KK+
Sbjct: 46 KKDGKQVWEAASKTALKKSWKRYEQEMLKNEKVAAKMLEKDATEVGVKAALEEAKKV 102
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 33.0 bits (75), Expect = 0.16
Identities = 9/28 (32%), Positives = 20/28 (71%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEE 490
+ +KE+KK+ ++KK+ + + E+ EE+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 32.2 bits (73), Expect = 0.29
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 467 EKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMM 500
+ +KE+KK+ ++KK+ E E+ E+ +
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCEL 135
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 33.1 bits (76), Expect = 0.16
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 6/32 (18%)
Query: 105 SHHHHHQTATASPPASA-----ISGSKSRGIG 131
SHHHHH ++ P S I+G +RG+G
Sbjct: 4 SHHHHHHSSGLVPRGSHMNSILITGC-NRGLG 34
>1pdi_A Short tail fiber protein; structural protein; 12.00A
{Enterobacteria phage T4} SCOP: i.19.1.1
Length = 278
Score = 33.3 bits (75), Expect = 0.16
Identities = 7/102 (6%), Positives = 20/102 (19%)
Query: 4 HHHSSSSVTTRMREEDAQEIMHHSSHHSSSVHHHSEHSKQTISHSTSSSATSVQHKMKRG 63
S +T + Q + + +Q H + G
Sbjct: 153 GSGRGSHLTNPNVNGNDQFGKPRLGVGCTGGYVGEVQIQQMSYHKHAGGFGEHDDLGAFG 212
Query: 64 TSPALSQAGLSHVASATLSQTTSSSVSTNHGPQSHSHHHQHS 105
+ + G ++ + + +
Sbjct: 213 NTRRSNFVGTRKGLDWDNRSYFTNDGYEIDPESQRNSKYTLN 254
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A
{Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Length = 143
Score = 32.2 bits (73), Expect = 0.16
Identities = 7/107 (6%), Positives = 33/107 (30%), Gaps = 19/107 (17%)
Query: 399 DSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEE 458
L + + E ++ + + + ++ + +
Sbjct: 17 QVAQKTGVSNTLENEFKGRASELQRMETDLQAKM-------------------KKLQSMK 57
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRR 505
+ + EK +++ +K + E++ ++ ++ +I+
Sbjct: 58 AGSDRTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQT 104
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB:
1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I*
1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I*
1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Length = 348
Score = 33.3 bits (75), Expect = 0.17
Identities = 7/48 (14%), Positives = 16/48 (33%)
Query: 448 GGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
EE +G E + E+ + + + + ++ EE
Sbjct: 286 DDEEALPEELQGVEADVATEEPTDDQDDDTASEDDADADDAAEEADDD 333
Score = 32.5 bits (73), Expect = 0.34
Identities = 5/46 (10%), Positives = 17/46 (36%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
+ E + EE + + + EE ++++++ +
Sbjct: 296 QGVEADVATEEPTDDQDDDTASEDDADADDAAEEADDDDDDDEDAG 341
Score = 31.7 bits (71), Expect = 0.56
Identities = 5/46 (10%), Positives = 17/46 (36%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMM 498
+ E + EE ++ + + EE +++++ +
Sbjct: 296 QGVEADVATEEPTDDQDDDTASEDDADADDAAEEADDDDDDDEDAG 341
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 32.6 bits (74), Expect = 0.17
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEE 485
E+E+ + EEE +KKK +KK KK+K E
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
Score = 31.1 bits (70), Expect = 0.55
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEE 486
E+E+ + EEE +KK+ +KK KK+K E
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
Score = 29.1 bits (65), Expect = 2.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEE 487
E+E+ + EE+ +K+K +KK KK+K E
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
Score = 27.6 bits (61), Expect = 7.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEE 490
E E+ + E++ +KKK +KK KK++ E
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA
methyltransferase fold, maintenance methyla transferase;
HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A*
3pt6_A* 3pt9_A* 4da4_A*
Length = 1002
Score = 33.7 bits (76), Expect = 0.18
Identities = 16/91 (17%), Positives = 34/91 (37%)
Query: 404 RKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEE 463
++R + + ++ + KA M + RR +E +++E ++
Sbjct: 51 KRRRCGVCEVCQQPECGKCKACKDMVKFGGSGRSKQACQERRCPNMAMKEADDDEEVDDN 110
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
+ +K + KKKK+ K E K
Sbjct: 111 IPEMPSPKKMHQGKKKKQNKNRISWVGEAVK 141
Score = 29.5 bits (65), Expect = 3.8
Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 441 TPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKK--------KEEEEEEEEE 492
+RR G ++ E G+ + + K + K+ ++ KE +++EE +
Sbjct: 49 AFKRRRCGVCEVCQQPECGKCKACKDMVKFGGSGRSKQACQERRCPNMAMKEADDDEEVD 108
Query: 493 KKKMMMMMKKIRRRPKEF 510
M K + K+
Sbjct: 109 DNIPEMPSPKKMHQGKKK 126
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle,
dimer, chaperone, STRE response; 3.23A {Thermus
thermophilus}
Length = 177
Score = 32.3 bits (74), Expect = 0.21
Identities = 10/54 (18%), Positives = 27/54 (50%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
EE E E++ + +E + +++ K +EE + +++ +++ R+R
Sbjct: 2 EERNHENTLEKDLEAVGQEAQALEERLKAAEEELKGLKDKYLRLLADFDNYRKR 55
Score = 31.5 bits (72), Expect = 0.41
Identities = 7/39 (17%), Positives = 20/39 (51%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEE 490
EE E E++ E ++ + +++ K ++E + ++
Sbjct: 2 EERNHENTLEKDLEAVGQEAQALEERLKAAEEELKGLKD 40
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e
3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 32.9 bits (74), Expect = 0.22
Identities = 7/56 (12%), Positives = 24/56 (42%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
++ + E +K K+K+ ++ ++E E ++ ++ K+ + +
Sbjct: 20 QKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAGSY 75
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding,
nucleotide-binding, membrane, transmembrane, transport
protein; 3.00A {Methanosarcina acetivorans} SCOP:
f.58.1.1
Length = 295
Score = 32.8 bits (75), Expect = 0.26
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 101 HHQHSHHHHHQTATASPPASAISGSKSR 128
HH H HHHHH + + +
Sbjct: 3 HHHHHHHHHHSSGENLYFQGHMKAKNRK 30
Score = 31.2 bits (71), Expect = 0.75
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 100 HHHQHSHHHHHQTATASPPASAISGSKSRGIGDPIP 135
HHH H HHHH + ++ +P+
Sbjct: 3 HHHHHHHHHHSSGENLYFQGHMKAKNRKTRKFEPLT 38
>3szv_A Pyroglutatmate porin OPDO; beta-barrel, channel, bacterial outer
membrane, membrane Pro; HET: C8E; 1.45A {Pseudomonas
aeruginosa} PDB: 2y0k_A*
Length = 401
Score = 32.9 bits (74), Expect = 0.29
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 104 HSHHHHHQTATASPPASAISGSKSRG 129
H HHHHH+ + S +
Sbjct: 2 HHHHHHHENLYFQGLEDLVEDSHASL 27
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone
chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A
{Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A
3c9b_A 3q33_B* 3q35_B* 3dm7_A
Length = 264
Score = 32.4 bits (73), Expect = 0.29
Identities = 6/37 (16%), Positives = 14/37 (37%)
Query: 447 GGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKK 483
G G + + +++ E ++ KK+K
Sbjct: 227 EGESGLSADGDSEDDDGSLGEVDLPLSDEEPSSKKRK 263
Score = 29.3 bits (65), Expect = 2.7
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E + + E EE E + + + +EE KK
Sbjct: 218 EAQRDLEDEEGESGLSADGDSEDDDGSLGEVDLPLSDEEPSSKK 261
Score = 29.3 bits (65), Expect = 2.8
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 440 DTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKK 478
D G G+ E+++ E + +E KK+K
Sbjct: 225 DEEGESGLSADGDSEDDDGSLGEVDLPLSDEEPSSKKRK 263
Score = 28.5 bits (63), Expect = 4.4
Identities = 4/38 (10%), Positives = 13/38 (34%)
Query: 446 GGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKK 483
G + + E+++ + ++ KK+
Sbjct: 225 DEEGESGLSADGDSEDDDGSLGEVDLPLSDEEPSSKKR 262
Score = 28.5 bits (63), Expect = 4.4
Identities = 8/47 (17%), Positives = 17/47 (36%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
+ + E+E E + E + +EE +K+K+
Sbjct: 218 EAQRDLEDEEGESGLSADGDSEDDDGSLGEVDLPLSDEEPSSKKRKV 264
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone,
rotamase; NMR {Escherichia coli}
Length = 171
Score = 31.5 bits (72), Expect = 0.32
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 93 HGPQSHSHHHQHSHHHHHQ 111
HG H H H H HHHHH
Sbjct: 153 HGAHDHHHDHDHDHHHHHH 171
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein,
conformational changes, SUGA protein; 2.15A {Escherichia
coli} PDB: 3m9x_A* 3ma0_A*
Length = 313
Score = 32.3 bits (74), Expect = 0.33
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 421 REKAQASMCNLLSRNPERID 440
E A M N L+ N +ID
Sbjct: 171 PENALKIMENALTANNNKID 190
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding,
phosphorylation, protein biosynthesis, translation
inititation; 1.8A {Homo sapiens}
Length = 208
Score = 32.0 bits (72), Expect = 0.34
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEE 490
EE E E+E+E E K + K + K + ++++
Sbjct: 156 EESSGGEEEDEDENIEVVYSKLESVPKVETVKSDNKDDD 194
Score = 31.2 bits (70), Expect = 0.61
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
EEE EE+E+E + K + K + + + ++++
Sbjct: 155 EEESSGGEEEDEDENIEVVYSKLESVPKVETVKSDNKDDD 194
Score = 30.9 bits (69), Expect = 0.69
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
EEE GEEE+E++ + K + K + + + ++++
Sbjct: 155 EEESSGGEEEDEDENIEVVYSKLESVPKVETVKSDNKDDD 194
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 32.4 bits (73), Expect = 0.38
Identities = 22/135 (16%), Positives = 31/135 (22%), Gaps = 17/135 (12%)
Query: 34 VHHHSEHSKQTISHSTSSSATSVQHKMKRGTSPALSQAGLSHVASATLSQTTSSSVSTNH 93
+ HH H S+ S L+ S S
Sbjct: 1 MAHHHHHHVDDDDKMFSTQVNS----------------SLTSPTGRGSMAAPSLHPSLGP 44
Query: 94 GPQSHSHHHQHSHHHHHQTATASPPASAISGSKSR-GIGDPIPNHILLSEHKPRPSESQS 152
G S H PP S IS + P + S P+ S +
Sbjct: 45 GIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMN 104
Query: 153 SSSAQPPSSSPDCHS 167
S+ P +
Sbjct: 105 PVSSSEDIKPPLGLN 119
Score = 31.2 bits (70), Expect = 0.87
Identities = 17/105 (16%), Positives = 28/105 (26%), Gaps = 1/105 (0%)
Query: 66 PALSQAGLSHVASATLSQTTSSSVSTNHGPQSHSHHHQHSHHHHHQTATASPPASAISGS 125
+ + V S+ S T S++ S H +T S P + +
Sbjct: 10 DDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPP 69
Query: 126 KSRGIGDPIPNHILLSEHKPRPSESQSSSSAQPPSSSPDCHSLPA 170
S P+ H + P S S P +
Sbjct: 70 FSVISS-PMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIK 113
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 31.9 bits (72), Expect = 0.46
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEE 490
++EKK + K++KK K+K++ E E
Sbjct: 112 LVQREKKLSRTKEEKKAIKEKQDAEAEP 139
Score = 31.2 bits (70), Expect = 0.84
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 467 EKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMM 500
++EKK + K++KK +E+++ E + +
Sbjct: 112 LVQREKKLSRTKEEKKAIKEKQDAEAEPYRYCVW 145
>3izc_K 60S ribosomal protein RPL16 (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_K
3o58_P 3o5h_P 3u5e_O 3u5i_O
Length = 199
Score = 31.5 bits (71), Expect = 0.47
Identities = 8/35 (22%), Positives = 11/35 (31%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
+ E + K E KK+ KK E
Sbjct: 155 KLEAKRKVSSAEYYAKKRAFTKKVASANATAAESD 189
Score = 29.1 bits (65), Expect = 2.5
Identities = 6/37 (16%), Positives = 12/37 (32%)
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
+ E K K + KK+ K+ + +
Sbjct: 154 AKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDV 190
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich,
hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB:
1u7q_A 2a00_A* 2a29_A*
Length = 156
Score = 31.0 bits (70), Expect = 0.47
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 101 HHQHSHHHHHQTAT 114
HH H HHHHH +
Sbjct: 3 HHHHHHHHHHSSGH 16
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 32.1 bits (73), Expect = 0.50
Identities = 18/114 (15%), Positives = 31/114 (27%), Gaps = 19/114 (16%)
Query: 397 VPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEE 456
V D K A + K+ EE + + E P G +
Sbjct: 134 VLDPKGAILNGVPVEKRQLLTDEEYRELRY-------GKQETYPLPP-------GVDALV 179
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
++GEE + +E + + E KK ++ R
Sbjct: 180 KDGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVEYVKK-----ERAGLRLPLA 228
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 30.6 bits (68), Expect = 0.52
Identities = 12/54 (22%), Positives = 35/54 (64%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIR 504
E+ EE+ E EE++E+ ++ + + + + ++++E+EEE++++ ++ +R
Sbjct: 28 DNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQLEDLR 81
Score = 29.1 bits (64), Expect = 2.2
Identities = 10/46 (21%), Positives = 29/46 (63%)
Query: 447 GGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
E+++ E+ EE+ E E+K+E+ + + + + E+++++++E
Sbjct: 20 VVAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDE 65
Score = 27.9 bits (61), Expect = 5.4
Identities = 7/46 (15%), Positives = 29/46 (63%)
Query: 448 GGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
E+++ E EE+ + ++KE++ + + + ++E++++++++
Sbjct: 20 VVAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDE 65
Score = 27.6 bits (60), Expect = 5.7
Identities = 8/46 (17%), Positives = 29/46 (63%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E+++ E+ EE+ + +EK+++ + + ++E+E+++++ +
Sbjct: 20 VVAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDE 65
Score = 27.6 bits (60), Expect = 5.7
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
E+ EE+ E EE+E+E E + + + + +++E+EEEE+
Sbjct: 28 DNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEE 71
>1h6q_A TCTP, P23FYP, translationally controlled tumor protein;
tumor-associated protein, function unknown; NMR
{Schizosaccharomyces pombe} SCOP: b.88.1.2 PDB: 1h7y_A
Length = 168
Score = 31.1 bits (70), Expect = 0.53
Identities = 18/102 (17%), Positives = 30/102 (29%), Gaps = 25/102 (24%)
Query: 429 CNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKE--------------KKKEKKK 474
C +++ G E+ EE EE E KK
Sbjct: 32 CQMVTVKQGGDV-----DIGANPSAEDAEENAEEGTETVNNLVYSFRLSPTSFDKKSYMS 86
Query: 475 ------KKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
K K + ++ E +K + +KKI K++
Sbjct: 87 YIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILANFKDY 128
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 32.0 bits (73), Expect = 0.54
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 8/44 (18%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEE--------EEEEEKKK 495
+ +E +E++K + + +EEE EE EE +
Sbjct: 726 DRFQESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRT 769
Score = 30.0 bits (68), Expect = 2.3
Identities = 5/43 (11%), Positives = 17/43 (39%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ +E E + + + + +++ + EE E+ +
Sbjct: 726 DRFQESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELR 768
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli,
hydrolase; 1.90A {Escherichia coli}
Length = 303
Score = 31.5 bits (72), Expect = 0.55
Identities = 2/39 (5%), Positives = 7/39 (17%)
Query: 445 RGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKK 483
+ + + + G + K
Sbjct: 257 KVDESLEKLADGDLGTLVPRGSMAISDPNSSSVDKLAAA 295
Score = 29.9 bits (68), Expect = 2.0
Identities = 2/33 (6%), Positives = 5/33 (15%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEE 485
E+ + + K
Sbjct: 263 EKLADGDLGTLVPRGSMAISDPNSSSVDKLAAA 295
Score = 27.6 bits (62), Expect = 9.8
Identities = 2/40 (5%), Positives = 9/40 (22%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
+E E+ + + ++ +
Sbjct: 258 VDESLEKLADGDLGTLVPRGSMAISDPNSSSVDKLAAALE 297
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 31.8 bits (71), Expect = 0.57
Identities = 4/44 (9%), Positives = 21/44 (47%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
G + E E +++ +K+ + ++ ++ + + + + + +
Sbjct: 307 GGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGG 350
Score = 30.6 bits (68), Expect = 1.3
Identities = 3/42 (7%), Positives = 20/42 (47%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ E + +++ +KE + ++ ++ + + + + + +
Sbjct: 309 RKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGG 350
Score = 29.8 bits (66), Expect = 2.0
Identities = 7/46 (15%), Positives = 23/46 (50%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
GG + E E+ +++ EK+ E ++ ++ + + + + + +
Sbjct: 307 GGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDG 352
Score = 29.4 bits (65), Expect = 2.9
Identities = 7/53 (13%), Positives = 25/53 (47%)
Query: 444 RRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
+RGG E+ ++ E+E E ++ ++ + + + + + + + + +
Sbjct: 305 KRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDGGAL 357
Score = 29.1 bits (64), Expect = 3.9
Identities = 10/46 (21%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEE-EEEEEEKKKMMMMMKKIRRR 506
E E+ K +K + + K++ E+E E ++M M+ +++ +
Sbjct: 297 ENFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQ 342
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 31.7 bits (71), Expect = 0.59
Identities = 11/51 (21%), Positives = 20/51 (39%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKI 503
++ + E E +++ K K K KK + ++ K MK I
Sbjct: 268 KKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSI 318
Score = 30.2 bits (67), Expect = 1.6
Identities = 8/51 (15%), Positives = 18/51 (35%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKK 502
+E E + + + + K KK K +K + ++ K +
Sbjct: 274 DEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSIDAFFGA 324
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone,
triacylglycerol hydrolase, all alpha helix protein, A/B
hydrolase fold; 1.85A {Burkholderia glumae} SCOP:
a.137.15.1
Length = 332
Score = 31.7 bits (71), Expect = 0.59
Identities = 13/61 (21%), Positives = 18/61 (29%)
Query: 100 HHHQHSHHHHHQTATASPPASAISGSKSRGIGDPIPNHILLSEHKPRPSESQSSSSAQPP 159
HHH H HHHH A G P + + + +A P
Sbjct: 2 HHHHHHHHHHSSGHIEGRHMPAAPSPAPAGAVAGGPAAGVPAAASGAAEAAMPLPAALPG 61
Query: 160 S 160
+
Sbjct: 62 A 62
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc
complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Length = 800
Score = 31.8 bits (71), Expect = 0.61
Identities = 24/105 (22%), Positives = 31/105 (29%), Gaps = 9/105 (8%)
Query: 101 HHQHSHHHHHQTATASPPASAISGSKSRGIGDPIPNHILLSEHKPRPSESQSSSSAQPPS 160
HH H HHHHH A A AS K + + +L +
Sbjct: 3 HHHHHHHHHHAGAGARNMASMNRLEKFFTTLNTAQSKVL--------KGYTTDELVSQIK 54
Query: 161 SSPDCHSLPACLCYQLELEHLEREKREREIRELRERELNDRIKED 205
D Y+L L E R R LR ++ D
Sbjct: 55 EYVDFTPYILKQTYRL-LCGQASEDRRNGARILRSLMFQFKLVTD 98
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 31.3 bits (70), Expect = 0.64
Identities = 5/47 (10%), Positives = 21/47 (44%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
E+ + K ++++ + K++K + + ++ + K + +
Sbjct: 17 EKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEK 63
Score = 30.9 bits (69), Expect = 0.80
Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 436 PERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
PE + R +E+ + E+ K + K++K + K ++ E E +K
Sbjct: 6 PENVQKKLAR--------DEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEK 57
Query: 496 MMMMMKKIRRRPKEF 510
++ K+ R+ F
Sbjct: 58 KIVDEKRKARKTGAF 72
Score = 28.2 bits (62), Expect = 5.9
Identities = 7/48 (14%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLH 512
E +KK + +K +K K ++ + + K++ + + +++
Sbjct: 7 ENVQKKLARDEKLRKAKAEQRKASSAQMKQR----KAEWISKAQKYAA 50
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain,
beta-barrel, translational GTPase, D structural
genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Length = 483
Score = 31.4 bits (72), Expect = 0.74
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+EK ++ K K KK + +
Sbjct: 1 DEKTVQRYYKTTVPTKPKKPHDISAFVKSALP 32
Score = 29.5 bits (67), Expect = 2.5
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
+E+ ++ K K KK + + +
Sbjct: 1 DEKTVQRYYKTTVPTKPKKPHDISAFVKSALPHL 34
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 31.2 bits (70), Expect = 0.74
Identities = 16/105 (15%), Positives = 45/105 (42%)
Query: 405 KREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEE 464
+ + + E E+ + + L +I + +++ E E EE+
Sbjct: 42 EAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDI 101
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
KE+ + ++ + + + + + E++E+ KK M+ ++K+ +
Sbjct: 102 AKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELES 146
Score = 28.9 bits (64), Expect = 3.8
Identities = 10/58 (17%), Positives = 28/58 (48%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
EE+ + + +E + + + K+K +K+++ ++E E +K + + + K
Sbjct: 97 IEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKN 154
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 31.0 bits (70), Expect = 0.77
Identities = 7/49 (14%), Positives = 19/49 (38%)
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
++ ++ +EKK ++ EEE + + E + ++
Sbjct: 274 QQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQK 322
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 31.6 bits (71), Expect = 0.79
Identities = 31/137 (22%), Positives = 48/137 (35%), Gaps = 9/137 (6%)
Query: 27 SSHHSSSVHHHSEHSKQTISHSTSSSATSVQHKMKRGTSPALSQAGLSHVASATLSQTTS 86
S +S + +S S S S S TS + TSP+ S S + S T+
Sbjct: 1596 SPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSP---TSPSYSPT------SPSYSPTSP 1646
Query: 87 SSVSTNHGPQSHSHHHQHSHHHHHQTATASPPASAISGSKSRGIGDPIPNHILLSEHKPR 146
S T+ S + + + T+ + P S S P++ S
Sbjct: 1647 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1706
Query: 147 PSESQSSSSAQPPSSSP 163
S S S +S +SP
Sbjct: 1707 TSPSYSPTSPSYSPTSP 1723
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 152
Score = 30.3 bits (68), Expect = 0.80
Identities = 6/47 (12%), Positives = 17/47 (36%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMM 498
+E + + + + + +K K +E ++ E K +
Sbjct: 63 FTGQEIKKSKRTILDNCFERTQYWEFEKDKDREHDKLVELCKIQFAA 109
Score = 28.4 bits (63), Expect = 3.7
Identities = 6/48 (12%), Positives = 19/48 (39%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMM 500
+E ++ + ++ + + +K K+ E ++ E K+
Sbjct: 62 SFTGQEIKKSKRTILDNCFERTQYWEFEKDKDREHDKLVELCKIQFAA 109
>1g4w_R Protein tyrosine phosphatase SPTP; virulence factor, GTPase
activating protein, 4-helix bundle, disorder, signaling
protein; 2.20A {Salmonella typhimurium} SCOP: a.24.11.1
c.45.1.2 PDB: 1g4u_S
Length = 383
Score = 31.4 bits (71), Expect = 0.80
Identities = 18/109 (16%), Positives = 31/109 (28%), Gaps = 2/109 (1%)
Query: 406 REERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEE 465
R Q + E ++ + L + + G GGE E + E
Sbjct: 49 RSLMTNLQNLNKIPEAKQLNDYVTTLTNIQVGVA--RFSQWGTCGGEVERWVDKASTHEL 106
Query: 466 KEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFLHRI 514
+ K+ K+ K E E+ E M + + I
Sbjct: 107 TQAVKKIHVIAKELKNVTAELEKIEAGAPMPQTMSGPTLGLARFAVSSI 155
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; HET: ADP; 3.40A {Bacillus subtilis} PDB:
1x37_A
Length = 543
Score = 30.9 bits (71), Expect = 0.95
Identities = 6/41 (14%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMM 499
G++E + E + +K ++ +E +E + +
Sbjct: 1 GDKEGKTGEVQ-TLTEKIEEAGMPDHVKETALKELNRYEKI 40
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 30.6 bits (68), Expect = 0.97
Identities = 18/115 (15%), Positives = 41/115 (35%), Gaps = 16/115 (13%)
Query: 396 PVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEE 455
P K+A +K + ++K + PE + RR
Sbjct: 5 PEKKKKVATVPGTLKKKVPAGPKTLKKK--------VPAVPETLKKKRRN--------FA 48
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
E + + ++ K +K ++K +K + +E + + + M ++ R+ F
Sbjct: 49 ELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNF 103
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 30.0 bits (67), Expect = 0.98
Identities = 14/93 (15%), Positives = 34/93 (36%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
+++R R+ + +R + A + ++ PE R + E ++ ++ ++
Sbjct: 65 EEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKK 124
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
K K K+K K + K+
Sbjct: 125 TAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR 157
Score = 28.1 bits (62), Expect = 4.5
Identities = 7/49 (14%), Positives = 22/49 (44%)
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
+ ++ + K ++++ + KE ++ ++ KK M K + +
Sbjct: 91 MAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPK 139
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1
a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F*
2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Length = 423
Score = 31.0 bits (70), Expect = 1.0
Identities = 5/57 (8%), Positives = 23/57 (40%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRP 507
+ + E+ E++ E+ + ++++++ + + + +I + P
Sbjct: 36 PDPDLEDPDLALEDDLLDLPEEGEGLDLEEEEEDLPIPKISTSDPVRQYLHEIGQVP 92
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2
c.62.1.4 PDB: 1jeq_B*
Length = 565
Score = 31.0 bits (69), Expect = 1.0
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ + E KKK + ++ ++ E+ K
Sbjct: 531 SKIKTLFPLIEAKKKDQVTAQEIFQDNHEDGPTAK 565
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 30.9 bits (70), Expect = 1.1
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 23/56 (41%)
Query: 99 SHHHQH--------------SHHHHHQTATASPPASAISGSK---------SRGIG 131
SHHH H SHHHHH ++ P S ++ ++ +G
Sbjct: 4 SHHHHHHSSGLVPRGSHMGSSHHHHHHSSGLVPRGSHMTAPTVPVALVTGAAKRLG 59
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 29.5 bits (66), Expect = 1.1
Identities = 23/106 (21%), Positives = 50/106 (47%), Gaps = 12/106 (11%)
Query: 399 DSKLARKREE--RLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEE 456
+ ++A +EE RL++ E+ R++ + M +LL E+ D + + E+
Sbjct: 12 EKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQ---EKNDLQLQV-------QAEQ 61
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKK 502
+ + EE ++ + K + + K K+ + E+EEE + K+
Sbjct: 62 DNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKR 107
Score = 28.3 bits (63), Expect = 3.2
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E E+E +EE + KE +K + ++K+ EE+ ++K
Sbjct: 10 EREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKN 51
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA;
HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Length = 437
Score = 30.9 bits (70), Expect = 1.1
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 71 AGLSHVASATLSQTTSSSVSTNHGPQSHSHHHQHSHHHH 109
G ++ +S LS + V+ + + H HHHH
Sbjct: 399 VGFTYTSSCVLSDRSCLRVTAGPTSAENLYFQSHHHHHH 437
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 29.7 bits (66), Expect = 1.1
Identities = 11/57 (19%), Positives = 26/57 (45%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPK 508
+ ++ E E+ +E K++K +KK+ ++ + ++ + KK K K
Sbjct: 98 LDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAK 154
Score = 29.4 bits (65), Expect = 1.8
Identities = 8/58 (13%), Positives = 24/58 (41%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
+ + ++ E ++ +E K+KK +KK + + + + K + + +
Sbjct: 94 RRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPV 151
Score = 28.6 bits (63), Expect = 2.7
Identities = 7/57 (12%), Positives = 25/57 (43%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
+ ++ + +K ++ K+KK +++ + + + K + K ++ K+
Sbjct: 93 NRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQ 149
Score = 28.6 bits (63), Expect = 2.8
Identities = 10/88 (11%), Positives = 33/88 (37%)
Query: 407 EERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEK 466
+++ ++ R + + + + + +++ + ++ + K
Sbjct: 71 QKKKKRNVTVARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRK 130
Query: 467 EKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
+ K+ K KK + KK ++ + KK
Sbjct: 131 LQGKDVKAAKKAETKKTKQPVGAKGGKK 158
Score = 28.6 bits (63), Expect = 3.2
Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 9/96 (9%)
Query: 411 RKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKK 470
+K+ R S+ + R + + E E+ E +++K
Sbjct: 72 KKKKRNVTVARAIVGISLEEINRRKNLD---ASHK------KAEAEKAVRELKQKKANDI 122
Query: 471 EKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
EKK+ +K + K + ++ E KK + K ++
Sbjct: 123 EKKRADRKLQGKDVKAAKKAETKKTKQPVGAKGGKK 158
Score = 28.6 bits (63), Expect = 3.5
Identities = 13/65 (20%), Positives = 27/65 (41%)
Query: 445 RGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIR 504
R G EE + K+ + EK ++ K+KK + E++ + K + + +
Sbjct: 82 RAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKK 141
Query: 505 RRPKE 509
K+
Sbjct: 142 AETKK 146
Score = 27.8 bits (61), Expect = 5.8
Identities = 8/57 (14%), Positives = 23/57 (40%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPK 508
+ + ++ E EK + K+KK +K+ + + + K + ++ +
Sbjct: 93 NRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQ 149
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1;
ribonucleotide reductase, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
Length = 419
Score = 30.7 bits (69), Expect = 1.1
Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 12/120 (10%)
Query: 105 SHHHHHQTATASPPASAISGSK-SRGIGDPIPNHILLSEHKPRPSESQSSSSAQPPSSSP 163
SHHHHH ++ P S + S+ D + + E K S +
Sbjct: 4 SHHHHHHSSGLVPRGSHMPKETPSKAAADALSD----LEIKDSKSNLNKELETLREENRV 59
Query: 164 DCHSLPACLCYQLELEHLEREKREREIRELRERELNDRIKEDLIKNASR----PFDPHWL 219
L L E + + +L+E E + + L ++ R P H +
Sbjct: 60 KSDMLKEKLSKDAENHKAYLKSHQVHRHKLKEMEKEEPL---LNEDKERTVLFPIKYHEI 116
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation,
vacuolar type, hydrolase, ATP synthesis, ATP-binding,
hydrogen ION transport; HET: ADP; 4.51A {Thermus
thermophilus} PDB: 3a5d_G 3j0j_G*
Length = 223
Score = 30.2 bits (67), Expect = 1.2
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
E+ E+E K+ K K + ++ EEE + +
Sbjct: 184 EQREREDTFRLKRIKGKIEAREAEEEGGRPNPQVEI 219
Score = 28.6 bits (63), Expect = 3.7
Identities = 8/36 (22%), Positives = 19/36 (52%)
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
E+ E ++ + K+ K K + ++ EEE + ++
Sbjct: 184 EQREREDTFRLKRIKGKIEAREAEEEGGRPNPQVEI 219
Score = 27.5 bits (60), Expect = 9.6
Identities = 6/35 (17%), Positives = 16/35 (45%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
+ E E+ + K K K + ++ ++E + +
Sbjct: 185 QREREDTFRLKRIKGKIEAREAEEEGGRPNPQVEI 219
>2lhu_A Mybpc3 protein; cardiac, structural protein; NMR {Mus musculus}
Length = 124
Score = 29.4 bits (65), Expect = 1.3
Identities = 10/47 (21%), Positives = 16/47 (34%)
Query: 444 RRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEE 490
RR G + E+ KK+ ++ K E EE+
Sbjct: 37 RRTSLAGAGRRTSDSHEDAGTLDFSSLLKKRDSFRRDSKLEAPAEED 83
>1y7u_A Acyl-COA hydrolase; structural genomics, coenzyme A, protein
structure initiative, PSI, midwest center for structural
GE MCSG; HET: COA; 2.80A {Bacillus cereus} SCOP:
d.38.1.1
Length = 174
Score = 30.0 bits (68), Expect = 1.3
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 9/64 (14%)
Query: 374 VFLRHWNRGDYNSCCRTDLTF---------KPVPDSKLARKREERLRKQAEREREEREKA 424
V + G+ + +TF PVP + E+ + A E+R
Sbjct: 102 VVSEYLISGEKRIAATSFVTFVALSKENNPVPVPRVIPDTEEEKESHRIAVLRAEQRHIR 161
Query: 425 QASM 428
+A
Sbjct: 162 KAES 165
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.0 bits (67), Expect = 1.3
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 10/45 (22%)
Query: 353 ARKREERLRKQAELKIKLFCPV-------FLRHWNRGDYNSC--C 388
+ R+ L I L CP + ++ GD C C
Sbjct: 5 ESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDV-VCALC 48
>3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A
{Mycobacterium tuberculosis}
Length = 330
Score = 30.5 bits (69), Expect = 1.4
Identities = 11/59 (18%), Positives = 22/59 (37%)
Query: 105 SHHHHHQTATASPPASAISGSKSRGIGDPIPNHILLSEHKPRPSESQSSSSAQPPSSSP 163
SHHHHH ++ P S ++ + + L+ ++++ A P
Sbjct: 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRVLSDDELTGLDEFALLAENAEQAGVNGPLP 62
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_I 4a1c_I 4a1e_I
Length = 198
Score = 29.9 bits (67), Expect = 1.4
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
EE+ + + K KK K+ +++E K
Sbjct: 156 EEKRRARAKTYHDKKVKQADARKKELAAPALKA 188
Score = 28.7 bits (64), Expect = 3.0
Identities = 7/40 (17%), Positives = 19/40 (47%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
E+ EE+ + +KK ++ +KK+ + +++
Sbjct: 153 EKLEEKRRARAKTYHDKKVKQADARKKELAAPALKAIKDK 192
>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42,
trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP:
b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A*
Length = 645
Score = 30.6 bits (68), Expect = 1.4
Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 9/106 (8%)
Query: 179 EHLEREKREREIRELRERELNDRIKEDLIKNASRP----FDPHWLELQRSSLDALRAHAL 234
EH +E+ + + R +RE L+ + P + WL+ L A L
Sbjct: 9 EHWPKERWKEDARRMREAGLSHVRIGEFAWALLEPEPGRLEWGWLDEAI---ATLAAEGL 65
Query: 235 AAALHSPL--PPHGMAAGHPAFLPPEMGGLPHGLGMPGVDSVKHEA 278
L +P PP + +P LP + G G
Sbjct: 66 KVVLGTPTATPPKWLVDRYPEILPVDREGRRRRFGGRRHYCFSSPV 111
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 30.6 bits (68), Expect = 1.4
Identities = 8/56 (14%), Positives = 20/56 (35%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPK 508
E+ ++ E + +++ + +K K KK + K + K +
Sbjct: 342 EQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDAD 397
Score = 30.2 bits (67), Expect = 1.7
Identities = 6/48 (12%), Positives = 18/48 (37%)
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
E+ +K + K K++ K ++ + ++ + + K
Sbjct: 342 EQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIA 389
Score = 29.0 bits (64), Expect = 3.6
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 462 EEEEKEKKKEKKKKKKK--KKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
E K K++ K +K K KK + K + K R+ +F
Sbjct: 348 AEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADF 398
Score = 29.0 bits (64), Expect = 4.0
Identities = 6/54 (11%), Positives = 17/54 (31%)
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
E + + + K K K KK + + ++ + ++ +
Sbjct: 348 AEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIAQ 401
Score = 29.0 bits (64), Expect = 4.2
Identities = 5/49 (10%), Positives = 19/49 (38%)
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
E+ ++ + + K++ K +K + ++ + + K +
Sbjct: 342 EQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAK 390
Score = 28.2 bits (62), Expect = 6.8
Identities = 6/51 (11%), Positives = 18/51 (35%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKK 502
E+ ++ + + + K +K K KK + + + + +
Sbjct: 342 EQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKAR 392
Score = 28.2 bits (62), Expect = 7.6
Identities = 5/52 (9%), Positives = 14/52 (26%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
E + + + ++ K KK + + E+ +
Sbjct: 348 AEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFI 399
>4a3z_A GH89_CBM32, alpha-N-acetylglucosaminidase family protein;
hydrolase, family 32 carbohydrate-binding module; HET:
MSE; 1.55A {Clostridium perfringens} PDB: 4a6o_A*
Length = 161
Score = 29.5 bits (66), Expect = 1.5
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 12/56 (21%)
Query: 105 SHHHHHQTATASPPASAISGSKSRGIGDPIPNHILLSEHKPRPSESQSSSSAQPPS 160
SHHHHH ++ P S + N++ ++E+K +S S P S
Sbjct: 4 SHHHHHHSSGLVPRGSHM----------ASANYVNIAENK--NVSGSNSQSGNPLS 47
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_e
Length = 244
Score = 30.2 bits (67), Expect = 1.5
Identities = 11/57 (19%), Positives = 25/57 (43%)
Query: 455 EEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFL 511
E E++++ +K + + K + E+ E E + K ++ +K+ R F
Sbjct: 22 EVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKGGFY 78
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 30.5 bits (69), Expect = 1.5
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
+ K ++KKKKK K + E EE +
Sbjct: 366 QSSASRKTQKKKKKKASKTAENATSGETLEENE 398
Score = 29.3 bits (66), Expect = 2.9
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
+ K +KK+KKK K + E EE E
Sbjct: 366 QSSASRKTQKKKKKKASKTAENATSGETLEENE 398
Score = 29.0 bits (65), Expect = 3.6
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ +K +KKKKKK K + E E+ +
Sbjct: 366 QSSASRKTQKKKKKKASKTAENATSGETLEENE 398
Score = 28.6 bits (64), Expect = 4.8
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
+ ++ +K+KKKK K + E EE +
Sbjct: 366 QSSASRKTQKKKKKKASKTAENATSGETLEENE 398
>2kwb_A TCTP, translationally-controlled tumor protein homolog; structural
genomics, northeast structural genomics consortiu PSI-2;
NMR {Caenorhabditis elegans} PDB: 2loy_A
Length = 189
Score = 29.6 bits (66), Expect = 1.6
Identities = 19/100 (19%), Positives = 30/100 (30%), Gaps = 20/100 (20%)
Query: 429 CNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEK-----------------EKKKE 471
+ R I G EE E++G +E E+ +
Sbjct: 32 GKHVVRKEGEIVLA---GSNPSAEEGAEDDGSDEHVERGIDIVLNHKLVEMNCYEDASMF 88
Query: 472 KKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFL 511
K KK K + E+ +K + KKI+ L
Sbjct: 89 KAYIKKFMKNVIDHMEKNNRDKADVDAFKKKIQGWVVSLL 128
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga
maritima}
Length = 352
Score = 30.1 bits (68), Expect = 1.6
Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 450 GGEEEEEEEG-EEEEEEKEKKKEKKKKKKKKKKKK 483
E + E + K+ + K K++K
Sbjct: 196 LAEARKFFAKVSGRVEVVDYSTRKEIRIYKTKRRK 230
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 29.9 bits (68), Expect = 1.6
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
Query: 105 SHHHHHQTATASPPASAISGSK------SRGIG 131
SHHHHH ++ P S + ++ IG
Sbjct: 4 SHHHHHHSSGLVPRGSHMEAPAAVVTGAAKRIG 36
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 30.1 bits (67), Expect = 1.7
Identities = 8/70 (11%), Positives = 23/70 (32%)
Query: 423 KAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKK 482
++ + LL+R ++ G + + EE ++++++E
Sbjct: 173 QSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAV 232
Query: 483 KEEEEEEEEE 492
E +
Sbjct: 233 AEYAAPAADT 242
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 203
Score = 29.6 bits (66), Expect = 1.7
Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 13/111 (11%)
Query: 400 SKLARKREERLR-------KQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGE 452
+K + +RL+ +++R A + +R + G
Sbjct: 92 TKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQA 151
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKI 503
E EK K+K K +KKK+ + ++ E+ +KK+ + +
Sbjct: 152 VTATLE------EKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVL 196
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding,
nucleotide-binding, NUCL protein transport, transport,
cytoplasm, GTPase activation; HET: GTP; 2.00A
{Saccharomyces cerevisiae}
Length = 191
Score = 29.8 bits (66), Expect = 1.7
Identities = 12/63 (19%), Positives = 26/63 (41%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEF 510
+ +EE + E ++ + + +K + EE+EE K+ + + KE+
Sbjct: 34 EDTKEETKKEGDDAPESPDIHFEPVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDADAKEW 93
Query: 511 LHR 513
R
Sbjct: 94 KER 96
Score = 27.5 bits (60), Expect = 8.9
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 440 DTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMM 499
+ P + +EE ++EG++ E + E +K K EE+EE K + +
Sbjct: 25 EKPETKKDEEDTKEETKKEGDDAPESPDIHFEPVVHLEKVDVKTMEEDEEVLYKVRAKLF 84
>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase,
isoform A, structural genomics, structural genomics
consortium, SGC transferase; 1.85A {Homo sapiens} PDB:
2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A*
3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A
Length = 312
Score = 29.9 bits (68), Expect = 1.7
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 105 SHHHHHQTATASPPASAISGSKSRGIGDPIPNHILLSEHKPRPSESQSSSSAQ 157
SHHHHH ++ P S I +G + + I L + P+ S +
Sbjct: 3 SHHHHHHSSGLVPRGSQIL-----CVGLVVLDVISLVDKYPKEDSEIRCLSQR 50
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA
binding, signal recognition particle (SRP), translation
regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1
PDB: 1e8o_A* 1e8s_A 1ry1_C*
Length = 232
Score = 30.0 bits (67), Expect = 1.8
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
++++KK + KK K + +++ EE++ M
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLISEEDDSAGSPM 147
>4a8j_C Elongator complex protein 6; transcription; 2.10A {Saccharomyces
cerevisiae} PDB: 4ejs_C
Length = 280
Score = 29.7 bits (66), Expect = 1.9
Identities = 22/101 (21%), Positives = 32/101 (31%), Gaps = 20/101 (19%)
Query: 24 MHHSSHHSSSVHH--------HSEHSKQTISHSTSSSATSVQHKMKRGTSPALSQAGLSH 75
MHH HH SV S S S + + H+ T P +
Sbjct: 1 MHHHHHHMGSVQRQDLVLFSDQSVLPAHFFQDSNSHNLFFITHQS--CTQP--LWMINAL 56
Query: 76 VASATLSQTTS----SSVSTNHGPQSH----SHHHQHSHHH 108
V + L +S SS +SH S H+ ++
Sbjct: 57 VETHVLGSPSSLNESSSSMLPSSTRSHAVLASFIHEQNYFT 97
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed
coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A
{Homo sapiens} PDB: 3sde_B
Length = 261
Score = 29.7 bits (67), Expect = 1.9
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Query: 412 KQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKE 471
+ E+ +E + M + ER PR G E +E EK+++++
Sbjct: 174 EPMEQFDDEDGLPEKLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQ 233
Query: 472 KKKKKKKKKKKKEEEEE---EEEEKKKM 496
+ ++ K+K E E E E + M
Sbjct: 234 VDRNIREAKEKLEAEMEAARHEHQLMLM 261
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.00A
{Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A
3q84_A
Length = 312
Score = 29.8 bits (66), Expect = 2.1
Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 1/103 (0%)
Query: 408 ERLRKQAEREREEREKAQASMCNLLSRNPER-IDTPRRRGGGGGGEEEEEEEGEEEEEEK 466
+AER E + +AS+ N + + GG +E +E E + +K
Sbjct: 91 MAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQK 150
Query: 467 EKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
K+ K+ + KK +EE+ + P++
Sbjct: 151 PWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQ 193
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor,
endocytosis, phosphoprotein; HET: 1PG; 2.80A
{Saccharomyces cerevisiae}
Length = 328
Score = 29.7 bits (66), Expect = 2.1
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 105 SHHHHHQTATASPPASAISGSKSRGIGDPIPNHILLSEHKPRPSESQSSSSAQPPSSSP 163
SHHHHH ++ P S ++ + + + I + P + SS+S S
Sbjct: 4 SHHHHHHSSGLVPRGSHMASERPVS---TLSSQITGELRELNPQATGSSTSLVGQSLFQ 59
>1y4c_A Maltose binding protein fused with designed helical protein; de
novo designed helical protein, maltose binding protein
fusion, de novo protein; HET: GLC; 1.90A {Escherichia
coli}
Length = 494
Score = 29.8 bits (67), Expect = 2.1
Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 10/110 (9%)
Query: 403 ARKREERLRKQAEREREEREKAQA-----SMCNLLSRNPERIDT-----PRRRGGGGGGE 452
R EE L+ + ++ ++AQ L R +R D GGGGE
Sbjct: 385 GRSSEELLKIALQEAQKTLQQAQELAKKGGGEEQLKRALKRADRNLWAAQELAKKGGGGE 444
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKK 502
E ++ ++ ++ + +E KK ++ K+ ++ ++ ++ + KK
Sbjct: 445 ELLKQALQQAQQLLRQAQELAKKGGGEELLKQALQQAQQLLQQAQELAKK 494
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins
binding, carbohydrate binding, calcium binding,
endoplasmic reticulu; 2.57A {Mus musculus}
Length = 332
Score = 29.6 bits (66), Expect = 2.2
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
+E EE E K EK+ K K+ ++++ + E
Sbjct: 289 TNDEAYAEEFGNETWGVTKAAEKQMKDKQDEEQRLKLEHHHHH 331
Score = 28.5 bits (63), Expect = 4.8
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
+E +E E K +K+ +++++EE+ K
Sbjct: 289 TNDEAYAEEFGNETWGVTKAAEKQMKDKQDEEQRLK 324
Score = 28.5 bits (63), Expect = 5.8
Identities = 7/36 (19%), Positives = 20/36 (55%)
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
+E E+ + K +K+ +++++EE++ K+
Sbjct: 290 NDEAYAEEFGNETWGVTKAAEKQMKDKQDEEQRLKL 325
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of
two (beta/ALFA)4 domains, metal transport; 1.70A
{Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A
2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Length = 284
Score = 29.6 bits (67), Expect = 2.2
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 92 NHGPQSHSHHHQHSHHHHH 110
+ H H + HHH
Sbjct: 93 HGDDDDHDHAEKSDEDHHH 111
Score = 28.1 bits (63), Expect = 5.9
Identities = 4/44 (9%), Positives = 11/44 (25%)
Query: 67 ALSQAGLSHVASATLSQTTSSSVSTNHGPQSHSHHHQHSHHHHH 110
+S+ + + + + + H H H
Sbjct: 66 PVSKLPGAKQVTIAQLEDVKPLLMKSIHGDDDDHDHAEKSDEDH 109
>2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II,
NYSGXRC, enolase, structural genomics, protei structure
initiative, PSI-2; 1.93A {Azoarcus SP}
Length = 397
Score = 30.0 bits (68), Expect = 2.2
Identities = 15/89 (16%), Positives = 22/89 (24%), Gaps = 15/89 (16%)
Query: 228 ALRAHALAAALHSPLPPHGM--------AAGHPAFLPPEMGGLPHGLGMPGVDSVKHEAL 279
A R LA + P+ M A H + P P +
Sbjct: 280 AQRWLTLARLANLPVICGCMVGSGLEASPAAHLLAANDWIAQFPQENAGPLHIHDCLNSR 339
Query: 280 TISGD--EGSMQPEEEEIPSPPHHIPRGP 306
I D + E + + GP
Sbjct: 340 DIDNDIALNVPRFEGGYL-----YPNDGP 363
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4
chimera; alpha-helical coiled coil, disorder, salt
links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB:
1nkn_A 3bat_A
Length = 89
Score = 28.0 bits (62), Expect = 2.3
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEE-EEEKKKMMMMMKKIRRRPKEFLH 512
+EEE +E+ ++ +K KE K ++ KK+ EE+ E+K + MK++ + +E L
Sbjct: 11 RQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLS 70
Query: 513 RI 514
+
Sbjct: 71 KN 72
>1z9v_A Conserved hypothetical protein MTH0776; solution structure,
archaeabacterium, unknown function; NMR
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 121
Score = 28.5 bits (63), Expect = 2.3
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 105 SHHHHHQTATASPPASAISGSKSRGIGDPIPNHILLSEHKPRPSE 149
SHHHHH ++ P S ++ + I + R
Sbjct: 4 SHHHHHHSSGLVPRGSHMTFCLETYLQQSGEYEIHMKRAGFRECA 48
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 30.2 bits (68), Expect = 2.3
Identities = 4/42 (9%), Positives = 15/42 (35%)
Query: 468 KKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
K+ ++K + KK+ + ++ + + +
Sbjct: 632 GKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPK 673
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 29.6 bits (66), Expect = 2.3
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMM 498
E+K KK+ KKK+ + K ++++ +KK +
Sbjct: 254 EKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFL 288
Score = 27.7 bits (61), Expect = 9.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
E EK+ KKE KKK+ + K ++++ +KK
Sbjct: 249 ENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKK 284
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 30.3 bits (68), Expect = 2.3
Identities = 8/51 (15%), Positives = 25/51 (49%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKI 503
E + E+ +K K+ + ++ + K+K E + + + + + ++K+
Sbjct: 1947 NRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKV 1997
Score = 28.7 bits (64), Expect = 5.6
Identities = 7/52 (13%), Positives = 25/52 (48%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKI 503
E + + E+ ++ ++ + ++ + K+K E + + + + K + + K
Sbjct: 1947 NRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVK 1998
>2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A
{Pseudomonas aeruginosa} SCOP: c.55.1.13 c.55.1.13 PDB:
2f9t_A*
Length = 271
Score = 29.7 bits (67), Expect = 2.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 105 SHHHHHQTATASPPASAIS 123
SHHHHH ++ P S ++
Sbjct: 4 SHHHHHHSSGLVPRGSHMA 22
>1vpm_A Acyl-COA hydrolase; NP_241664.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
hydrolase; HET: COA; 1.66A {Bacillus halodurans} SCOP:
d.38.1.1 PDB: 3sps_A
Length = 169
Score = 28.8 bits (65), Expect = 2.5
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 374 VFLRHWNRGDYNSCCRTDLTF---------KPVPDSKLARKREERLRKQAEREREEREKA 424
V + G+ + LT KPVP + + E+RL + A +E R+K
Sbjct: 106 VHSNNLLTGERTLTTESFLTMVAVDESGKPKPVPQVEPQTEEEKRLYETAPARKENRKKR 165
Query: 425 QA 426
A
Sbjct: 166 AA 167
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 29.6 bits (67), Expect = 2.5
Identities = 6/98 (6%), Positives = 20/98 (20%), Gaps = 12/98 (12%)
Query: 399 DSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEE 458
+ +++R RE S + + ++
Sbjct: 100 LLGESTTDWKQIRSIIMRENFIPTIVNFS---AEEISDAIREKMKKN---------YMSN 147
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
E + K + + + + +
Sbjct: 148 PSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPL 185
>2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B-
hydrolase fold, acyltransferase, acetyl coenzyme A,
antibiotic biosynthesis; HET: COA; 2.2A {Acremonium
chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A*
Length = 444
Score = 29.7 bits (67), Expect = 2.5
Identities = 12/80 (15%), Positives = 21/80 (26%), Gaps = 5/80 (6%)
Query: 242 LPPHGMAAGHPAFLPPEMGGLPHG-----LGMPGVDSVKHEALTISGDEGSMQPEEEEIP 296
LP +A P PP + +PHG P + + + D + +
Sbjct: 2 LPSAQVARLKPDPFPPSLSPIPHGAVTFAALAPCHNLPIFSSRQMLRDSLTYSHTSPTMS 61
Query: 297 SPPHHIPRGPSPEPKIEDSE 316
+ I
Sbjct: 62 PQIANRFEASLDAQDIARIS 81
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 29.5 bits (67), Expect = 2.6
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 9/40 (22%)
Query: 101 HHQHSHHHHHQTATASPPASAISGSK---------SRGIG 131
HH H HHHHH + +S SRGIG
Sbjct: 3 HHHHHHHHHHSSGHIDDDDKHMSSLSGQVAVVTGASRGIG 42
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, cell cycle; HET: GTP
GDP; 4.17A {Artificial gene}
Length = 240
Score = 29.2 bits (64), Expect = 2.6
Identities = 18/111 (16%), Positives = 46/111 (41%)
Query: 399 DSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEE 458
++ + +E+L ++ E +E RE A+M L + + R+R + +
Sbjct: 87 NNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAK 146
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
+ ++ + K+ +K ++ + K E+ E E E + + + +
Sbjct: 147 EKLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAK 197
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 29.5 bits (67), Expect = 2.6
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
E E+ + E+ ++ E KK K+K+ +E E ++
Sbjct: 418 EFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDD 458
Score = 28.7 bits (65), Expect = 4.7
Identities = 8/56 (14%), Positives = 27/56 (48%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
+E E++ +E K+K+ + ++ +K + E+ ++++ K + + +
Sbjct: 394 PNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQ 449
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional,
carboh binding, peptide binding, multi-compartmental,
chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A*
3o0v_A* 3o0x_A*
Length = 265
Score = 29.3 bits (65), Expect = 2.6
Identities = 7/35 (20%), Positives = 19/35 (54%)
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+E E+ + K +K+ +++++EE++ K
Sbjct: 231 NDEAYAEEFGNETWGVTKAAEKQMKDKQDEEQRLK 265
Score = 29.3 bits (65), Expect = 3.1
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 459 GEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
+E +E E K +K+ +++++EE+ K
Sbjct: 230 TNDEAYAEEFGNETWGVTKAAEKQMKDKQDEEQRLK 265
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G
3o58_F 3o5h_F 3u5e_E 3u5i_E
Length = 176
Score = 28.9 bits (64), Expect = 2.6
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 473 KKKKKKKKKKKEEEEEEEEEKKKMMMMMKK 502
K+K KK+KKE E++ K++ +
Sbjct: 107 AKEKLTKKEKKEANLFPEQQNKEIKAERVE 136
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 29.1 bits (65), Expect = 2.7
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKK 483
E+EE + E+K + +++ + +K+
Sbjct: 151 TEKEEAVAKAAEKKVVRLTSRQRGRIAAQKR 181
Score = 28.4 bits (63), Expect = 4.8
Identities = 5/31 (16%), Positives = 16/31 (51%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKK 482
E+EE + E++ + +++ + +K+
Sbjct: 151 TEKEEAVAKAAEKKVVRLTSRQRGRIAAQKR 181
>3qll_A Citrate lyase; beta barrel; 2.45A {Yersinia pestis}
Length = 316
Score = 29.5 bits (67), Expect = 2.7
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 105 SHHHHHQTATASPPASAISGSKSRGIGDPIPNHILLSEHKPRP 147
SHHHHH ++ P S + G +S
Sbjct: 4 SHHHHHHSSGLVPRGS--HMASMTGGQQMGRGSEFMSNLDTYQ 44
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 29.5 bits (67), Expect = 2.7
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 1/86 (1%)
Query: 394 FKPVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEE 453
V AR+ + RK + + + +E + + G E
Sbjct: 255 ILEVESEPRAREVVDW-RKYEQEQEKNKEDLKLIEEKRKEHQEAHRKDREKYGTVHWKER 313
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKK 479
+ E+ +++ K KEK ++
Sbjct: 314 SYIKYREKRQQQPLKPKEKLERDSNV 339
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein,
translation; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 103
Score = 27.8 bits (62), Expect = 2.7
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
E +K KE K ++ EE ++ K
Sbjct: 70 ETPGQKYKETDLLILFKDDYFAKKNEERKQNK 101
Score = 26.6 bits (59), Expect = 8.0
Identities = 7/43 (16%), Positives = 18/43 (41%)
Query: 454 EEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
+ E ++ E +K ++ K ++ EE ++ K+
Sbjct: 60 DSIESAKKFVETPGQKYKETDLLILFKDDYFAKKNEERKQNKV 102
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 29.6 bits (66), Expect = 2.8
Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 398 PDSKLARKREERLRKQAEREREEREKAQ-ASMCNLLSRNPERIDTPRRRGGGGGGEEEEE 456
P +K AR + ++ +E ER++ A+M + + + + G E
Sbjct: 382 PQNKAARLQISMC-QKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNE 440
Query: 457 EEGEEEEEEKEK 468
+ + + E+EK
Sbjct: 441 KGTDSQAMEEEK 452
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin
fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A
4afr_A
Length = 367
Score = 29.6 bits (65), Expect = 2.9
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 105 SHHHHHQTATASPPASAISGSKSRGIGDP-IPNHILLSEH---KPRPSESQSSSSAQPPS 160
SHHHHH ++ P S + ++ + +++ L +P Q+ PP
Sbjct: 4 SHHHHHHSSGLVPGGSHMCSLITQLCDAGQLADYVGLGWLNAVSSQPYLVQALGLQPPPR 63
Query: 161 SSP 163
Sbjct: 64 RVD 66
>1feu_A 50S ribosomal protein L25; general stress protein CTC, 5S
rRNA-protein complex, cadmium IONS, ribosome; 2.30A
{Thermus thermophilus} SCOP: b.53.1.1 PDB: 2j01_Z 1vsp_T
2hgj_Y 2hgq_Y 2hgu_Y 1vsa_T 2j03_Z 2jl6_Z 2jl8_Z 2v47_Z
2v49_Z 2wdi_Z 2wdj_Z 2wdl_Z 2wdn_Z 2wh2_Z 2wh4_Z 2wrj_Z
2wrl_Z 2wro_Z ...
Length = 206
Score = 28.9 bits (65), Expect = 2.9
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 451 GEEEEEEEGEEEEEEKEKKKEKKKKKKK 478
E+ EE E E E K+ K+++++
Sbjct: 179 DVEKLAEEAAAEVAEPEVIKKGKEEEEE 206
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 29.6 bits (66), Expect = 3.0
Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 21/141 (14%)
Query: 105 SHHHHHQTATASPPASAISGSKSRGIGDPIPNHILLSEHKPRPSESQSSSSAQPPSSSPD 164
SHHHHH ++ P S+ S +R PR + +AQP +SP
Sbjct: 4 SHHHHHHSSGLVPRGSSGSSMAAR---------------PPRAKPAPRRRAAQPSDASPA 48
Query: 165 CHSLPACLCY-QLELEHLEREKREREIRELRERELNDRIKEDLIKNASRPF-----DPHW 218
L Y Q + E ++ + R + + ++ + P +
Sbjct: 49 AQVDLRTLGYSQQQQEKIKPKVRSTVAQHHEALVGHGFTHAHIVALSQHPAALGTVAVTY 108
Query: 219 LELQRSSLDALRAHALAAALH 239
+ + +A +
Sbjct: 109 QHIITALPEATHEDIVGVGKQ 129
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Mycobacterium tuberculosis}
Length = 434
Score = 29.4 bits (67), Expect = 3.0
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
Query: 105 SHHHHHQTATASPPASAISGSKSR------GIG 131
SHHHHH ++ P S + K+ GI
Sbjct: 4 SHHHHHHSSGLVPRGSHMVTGKAFPYVVVTGIA 36
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 29.0 bits (64), Expect = 3.1
Identities = 18/162 (11%), Positives = 52/162 (32%), Gaps = 14/162 (8%)
Query: 350 SKLARKREERLRKQAELKIK-LFCPVFLRHWNRGDYNSCCRTDLTFKPVPDSKLARKREE 408
K+A + +++Q+ + ++ ++ + G R E
Sbjct: 52 MKIAEAGKVSIQQQSHMPLQYIYTLFLEHDLSLGTLAMETVAQQKRDYYQPLAAKRTEIE 111
Query: 409 RLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEEEKEK 468
+ RK+ + + + +K L R + E+ E+ +
Sbjct: 112 KWRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQR--------SEDLRARSQGSPEDSAPQ 163
Query: 469 KKEKKKKKKKKKKKKEEE-----EEEEEEKKKMMMMMKKIRR 505
K+++++++ EE +E E + + ++
Sbjct: 164 ASPGPSKQQERRRRSREEAQAKAQEAEALYQACVREANARQQ 205
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 29.5 bits (65), Expect = 3.2
Identities = 12/90 (13%), Positives = 37/90 (41%)
Query: 404 RKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEE 463
R++ + ER +++++ Q + + EE+ + + +
Sbjct: 320 REKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAK 379
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
EE E+++ + + ++ ++ + E E +K
Sbjct: 380 EELEQRQNELQAMMQRLEETKNMEAAERQK 409
>2enk_A HUEL, solute carrier family 30 member 9; cation transporter,
cobalt, zinc, cadmium, protein of unknown function
DUF993, embryonic LUNG protein; NMR {Homo sapiens}
Length = 101
Score = 27.5 bits (61), Expect = 3.2
Identities = 6/33 (18%), Positives = 16/33 (48%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKK 482
G E E + +E + + +E+ + +K ++
Sbjct: 66 GSPEALAREKKLRKEAEIEYRERLFRNQKILRE 98
>2fkk_A Baseplate structural protein GP10; bacteriophage T4, tail,
evolution, structur comparisons, viral protein; HET:
EDO; 1.20A {Enterobacteria phage T4}
Length = 206
Score = 28.7 bits (63), Expect = 3.2
Identities = 9/73 (12%), Positives = 19/73 (26%)
Query: 26 HSSHHSSSVHHHSEHSKQTISHSTSSSATSVQHKMKRGTSPALSQAGLSHVASATLSQTT 85
H++ + + + + T V S +
Sbjct: 118 HTAGGTGGSTSVTLENTNLPATETDEEVLIVDENGSVIVGGCQYDPDESGPIYTKYREAK 177
Query: 86 SSSVSTNHGPQSH 98
+S+ ST+ P S
Sbjct: 178 ASTNSTHTPPTSI 190
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 29.1 bits (66), Expect = 3.2
Identities = 11/37 (29%), Positives = 13/37 (35%), Gaps = 11/37 (29%)
Query: 106 HHHHHQTATASPPASAISGSK-----------SRGIG 131
HHHHH + + S SRGIG
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMSDTPVVLVTGGSRGIG 39
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 29.2 bits (65), Expect = 3.2
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEE 492
E+ K E+ +++EEE++E
Sbjct: 275 EQRKASLVERLNALNSSAGADDDDEEEDDE 304
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 28.9 bits (64), Expect = 3.4
Identities = 2/40 (5%), Positives = 9/40 (22%)
Query: 447 GGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEE 486
+ E+ + K+ + + +
Sbjct: 111 KRPRSRTLTAVHDKILEDLVFPTEIVGKRVRYLVGGNKIQ 150
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 29.1 bits (66), Expect = 3.5
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 11/36 (30%)
Query: 106 HHHHHQTATASPPASA----------ISGSKSRGIG 131
HHHHH ++ P S ++G+ + GIG
Sbjct: 1 HHHHHHSSGLVPRGSHMATQDSEVALVTGA-TSGIG 35
>2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET:
SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A*
2osw_A* 2oyl_A* 2oym_A* 2osy_A*
Length = 481
Score = 29.2 bits (64), Expect = 3.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 105 SHHHHHQTATASPPASAISGSKSRGIGDPIPNHILLSEHKPR 146
SHHHHH ++ P S +SGS S P+++ + +
Sbjct: 4 SHHHHHHSSGLVPRGSHMSGSGSGSGTALTPSYLKDDDGRSL 45
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix
bundle, signaling protein, actin-binding, alternative
splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Length = 86
Score = 27.1 bits (60), Expect = 3.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 105 SHHHHHQTATASPPASAISGSKSRGIGD 132
SHHHHH ++ P S +SG G+
Sbjct: 4 SHHHHHHSSGLVPRGSHMSGLGEAGMSA 31
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania
major}
Length = 467
Score = 29.3 bits (65), Expect = 3.7
Identities = 13/104 (12%), Positives = 22/104 (21%)
Query: 398 PDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEE 457
P K A + + + A + + RR +
Sbjct: 48 PSKKAAGGQRVTAEVEVAPITTDATSATVTAAGGAKKKATTGSPARRTSSAAKITNGDAG 107
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMK 501
E E KK +K+ + M K
Sbjct: 108 ELIRTAEALAALNAKKSEKEIWSDVVPFVRRTTDSDFDPSRMYK 151
Score = 28.1 bits (62), Expect = 7.9
Identities = 13/107 (12%), Positives = 24/107 (22%)
Query: 397 VPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEE 456
+P SK A + + + ++ +P RR +
Sbjct: 46 LPPSKKAAGGQRVTAEVEVAPITTDATSATVTAAGGAKKKATTGSPARRTSSAAKITNGD 105
Query: 457 EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKI 503
E KK +K+ + M K
Sbjct: 106 AGELIRTAEALAALNAKKSEKEIWSDVVPFVRRTTDSDFDPSRMYKF 152
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_K
Length = 206
Score = 28.8 bits (64), Expect = 3.7
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
E EE+ E+ + +++K+ K + K +K EE+ + E
Sbjct: 159 RELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEI 200
Score = 28.0 bits (62), Expect = 6.6
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 461 EEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKI 503
E EEK K+K K ++K+ K + E+ ++K+ ++ +
Sbjct: 159 RELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEIL 201
>3nrx_A Protein regulator of cytokinesis 1; spectrin fold, microtubule
binding domain, protein binding; 1.75A {Homo sapiens}
PDB: 3nry_A
Length = 130
Score = 28.0 bits (62), Expect = 3.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEE 488
E+ E +KE+ K++++ K KK+ E E
Sbjct: 97 AEQWEMHRLEKERAKQERQLKNKKQTETE 125
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 29.2 bits (66), Expect = 3.7
Identities = 7/39 (17%), Positives = 17/39 (43%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEE 490
+ + +K+ + K+K+K + K+E E +
Sbjct: 15 GPGPSGDMAAKMSKKKAGRGGGKRKEKLENMKKEMEIND 53
>3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase,
magnesium binding site, lyase; HET: P4C; 1.80A
{Bradyrhizobium SP} PDB: 3tte_A*
Length = 383
Score = 28.8 bits (65), Expect = 4.1
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 228 ALRAHALAAALHSPLPPHGMAAGH 251
L A A P+ H +
Sbjct: 304 WLNVAGQADAASIPMSSHILPEAS 327
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 29.1 bits (64), Expect = 4.2
Identities = 11/56 (19%), Positives = 21/56 (37%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRP 507
E+ + ++ K+ KK KK KK ++ +KK ++P
Sbjct: 364 EKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKKP 419
>1xes_A Dihydropinosylvin synthase; native structure, transferase; HET:
3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A
Length = 413
Score = 28.8 bits (64), Expect = 4.2
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 105 SHHHHHQTATASPPASAISGSKSRGI 130
SHHHHH ++ P S + G G
Sbjct: 4 SHHHHHHSSGLVPRGSHMGGVDFEGF 29
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 28.1 bits (62), Expect = 4.4
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIR 504
E KE+ K+ K +KK KK + + ++ + + K +
Sbjct: 114 EIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKGPK 154
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer,
transferase, serine/threonine-protein kinase,
nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Length = 373
Score = 28.9 bits (65), Expect = 4.4
Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Query: 104 HSHHHHHQTATASPPASAISGSKSRGIGDPIPNHILLSEH--KPRPSESQSSSSAQPPSS 161
H HHHH K+ G D H E +E S + +
Sbjct: 3 HHHHHHSSGVDLGTENLYFQSMKNSGDQDSRSGHNEAKEVWSNADLTERMPVKSKRTSAL 62
Query: 162 SPDCHSLPA 170
+ D + PA
Sbjct: 63 AVDIPAPPA 71
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 28.7 bits (65), Expect = 4.4
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 12/41 (29%)
Query: 105 SHHHHHQTATASPPASA-----------ISGSKSRGIGDPI 134
+HHHHH T ++G G+G I
Sbjct: 2 AHHHHHHMGTLEAQTQGPGSMQAKRVAFVTGG-MGGLGAAI 41
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 28.8 bits (64), Expect = 4.5
Identities = 17/115 (14%), Positives = 38/115 (33%), Gaps = 6/115 (5%)
Query: 396 PVPDSKLARKREERLR--KQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEE 453
P P S R + +L+ + +R R K + + E + E+
Sbjct: 85 PDPLSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIED 144
Query: 454 EEE----EEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIR 504
E++ + + +++ + ++ +KE E E + KI
Sbjct: 145 EKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKID 199
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 29.0 bits (64), Expect = 4.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 468 KKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKK 502
+ K + KK KK+K EEE+++E E+K+ K
Sbjct: 820 RAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNK 854
Score = 28.6 bits (63), Expect = 6.7
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 10/52 (19%)
Query: 461 EEEEEKEKKKEK----------KKKKKKKKKKKEEEEEEEEEKKKMMMMMKK 502
EE K+ EK + K + KK KKE+ EEE+KK+ K+
Sbjct: 798 MYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKE 849
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB:
3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Length = 371
Score = 28.7 bits (64), Expect = 4.6
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 101 HHQHSHHHHHQTATASPPAS 120
HH H HHHHH ++
Sbjct: 3 HHHHHHHHHHHHSSGHIDDD 22
Score = 28.7 bits (64), Expect = 5.3
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 98 HSHHHQHSHHHHHQTATASPPASAISGSKSRGI 130
H HHH H HHHH + +S +
Sbjct: 3 HHHHHHHHHHHHSSGHIDDDDKHMLEMIQSHPL 35
Score = 28.7 bits (64), Expect = 5.5
Identities = 10/36 (27%), Positives = 12/36 (33%)
Query: 100 HHHQHSHHHHHQTATASPPASAISGSKSRGIGDPIP 135
HHH H HHHHH + + P
Sbjct: 4 HHHHHHHHHHHSSGHIDDDDKHMLEMIQSHPLLAAP 39
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large
ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila}
PDB: 4a19_E 4a1b_E 4a1d_E
Length = 191
Score = 28.1 bits (62), Expect = 4.8
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 469 KKEKKKKKKKKKKKKEEEEEEEEEKKKMM 497
+EK +K K K E EE+++++ +
Sbjct: 118 GREKARKNHKNLFKAELTEEQKKKETERK 146
Score = 27.3 bits (60), Expect = 8.8
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 464 EEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
+ E ++K +K K + E EE+KKK
Sbjct: 110 AKFEDDYFGREKARKNHKNLFKAELTEEQKKK 141
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid;
transport protein, solute-binding protein; 2.26A
{Neisseria gonorrhoeae}
Length = 291
Score = 28.5 bits (64), Expect = 4.9
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 99 SHHHQHSHHHHHQTA 113
HHH H HHHH
Sbjct: 2 GHHHHHHHHHHSSGH 16
Score = 28.5 bits (64), Expect = 5.0
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 101 HHQHSHHHHHQTATASPPASAISG 124
HH H HHHHH + + G
Sbjct: 3 HHHHHHHHHHSSGHIDDDDKHMVG 26
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 28.8 bits (63), Expect = 5.0
Identities = 7/38 (18%), Positives = 19/38 (50%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEE 489
+E+E+E E+++ E + +++ + E+ E
Sbjct: 376 ADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAPE 413
Score = 28.4 bits (62), Expect = 7.2
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
EE +E+E EEE+++ + + + +++ E+ E K
Sbjct: 374 EEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAPECK 415
>1xfx_A Calmodulin-sensitive adenylate cyclase; protein-protein
interaction, lyase/metal binding protein complex; 3.20A
{Bacillus anthracis} PDB: 1xfw_A* 1xfv_A 1xfy_A 1xfz_A
1y0v_A 1xfu_A
Length = 777
Score = 28.8 bits (63), Expect = 5.0
Identities = 13/63 (20%), Positives = 27/63 (42%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKEFL 511
E + + + E+ + +KEK K K E E ++ ++ ++KKI + E
Sbjct: 15 YTESDIKRNHKTEKNKTEKEKFKDSINNLVKTEFTNETLDKIQQTQDLLKKIPKDVLEIY 74
Query: 512 HRI 514
+
Sbjct: 75 SEL 77
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 28.0 bits (63), Expect = 5.0
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 462 EEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
++ E KK + K+ + E
Sbjct: 170 YKKLSELKKTINNRIKEYRDILARTEGGHHHH 201
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase;
18.00A {Escherichia coli} PDB: 2y7h_A*
Length = 464
Score = 28.6 bits (64), Expect = 5.1
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 451 GEEEEEEEGEEEEEE--KEKKKEKKKKKKKKKKKKE 484
E + GE ++ K E+ KK +K+
Sbjct: 428 AENPDLISGENSAAALLEKIKAERAASGGKKASRKK 463
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 27.8 bits (61), Expect = 5.1
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKI 503
+ KEKKK +K +K +K K + + K++ +K+
Sbjct: 110 KANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQKV 150
Score = 27.0 bits (59), Expect = 9.7
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
+ E EE+ + KEKKK +K +K ++ + + K K ++
Sbjct: 95 SLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQK 149
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide
binding protein; 1.40A {Saccharomyces cerevisiae} PDB:
3plv_A 1m94_A 1p0r_A
Length = 93
Score = 26.9 bits (59), Expect = 5.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 105 SHHHHHQTATASPPAS 120
SHHHHH ++ P S
Sbjct: 4 SHHHHHHSSGLVPRGS 19
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn
finger, ADP-ribosylation, D damage, DNA repair,
DNA-binding, glycosyltransferase; 1.70A {Homo sapiens}
PDB: 2jvn_A
Length = 160
Score = 28.1 bits (62), Expect = 5.2
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 473 KKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIR 504
+ KKK KK+K+++ + E+ K ++ I+
Sbjct: 4 EVAKKKSKKEKDKDSKLEKALKAQNDLIWNIK 35
>2j3x_A C2 toxin component I; ADP-ribosyltransferase; 1.75A {Clostridium
botulinum} PDB: 2j3v_A 2j3z_A
Length = 431
Score = 28.8 bits (63), Expect = 5.3
Identities = 7/43 (16%), Positives = 20/43 (46%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKK 502
+E + K + + K+ K+++K+ + E+ + + K
Sbjct: 5 KEPIDFINKPESEAKEWGKEEEKRWFTKLNNLEEVAVNQLKNK 47
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 28.9 bits (64), Expect = 5.3
Identities = 30/139 (21%), Positives = 45/139 (32%), Gaps = 4/139 (2%)
Query: 27 SSHHSSSVHHHSEHSKQTISHSTSSSATSVQHKMKRGTSPALSQAGLSHVASATLSQTTS 86
S +S + +S S S S S TS + TSP+ S S+ ++ TS
Sbjct: 1588 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY---SPTSPSYSPTSPSYSPTSPSYSPTS 1644
Query: 87 SSVSTNHGPQS-HSHHHQHSHHHHHQTATASPPASAISGSKSRGIGDPIPNHILLSEHKP 145
S S S S + + + T+ + P S S PN+ S
Sbjct: 1645 PSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYS 1704
Query: 146 RPSESQSSSSAQPPSSSPD 164
S S S +
Sbjct: 1705 PTSPGYSPGSPAYSPKQDE 1723
>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein;
enolase superfamily, prediction of function; HET: NSK;
1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*
Length = 369
Score = 28.7 bits (65), Expect = 5.3
Identities = 7/38 (18%), Positives = 9/38 (23%), Gaps = 8/38 (21%)
Query: 228 ALRAHALAAALHSPLPPHGM--------AAGHPAFLPP 257
A++ A M A H AF
Sbjct: 277 AVKLAHQAEMAGIECQVGSMVESSVASSAGFHVAFSKK 314
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone;
HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A*
3vlf_A* 4a3v_A* 4a3t_A*
Length = 500
Score = 28.6 bits (63), Expect = 5.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 105 SHHHHHQTATASPPASAISGSKS 127
SHHHHH ++ P S +S ++
Sbjct: 4 SHHHHHHSSGLVPRGSHMSEKET 26
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga
maritima} PDB: 2gaj_A*
Length = 633
Score = 28.7 bits (65), Expect = 5.9
Identities = 6/39 (15%), Positives = 17/39 (43%)
Query: 470 KEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPK 508
+ K+KK + E +E + +++++ + K
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVK 237
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse,
BAR domain, endocytosis; 2.60A {Mus musculus} PDB:
3qe6_A
Length = 320
Score = 28.2 bits (62), Expect = 5.9
Identities = 15/103 (14%), Positives = 29/103 (28%), Gaps = 1/103 (0%)
Query: 408 ERLRKQAEREREEREKAQASMCNLLSRNPERI-DTPRRRGGGGGGEEEEEEEGEEEEEEK 466
AER E + + + S R GG E + +K
Sbjct: 82 HAFFTAAERLSELHLEVREKLHGPDSERVRTWQRGAFHRPVLGGFRASRAAEDGFRKAQK 141
Query: 467 EKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
K K+ + KK ++E+ + + ++
Sbjct: 142 PWLKRLKEVEASKKSYHTARKDEKTAQTRESHAKADSSMSQEQ 184
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic
binding protein, thermophilic proteins, trap- transport;
HET: MSE; 1.90A {Thermotoga maritima}
Length = 327
Score = 28.5 bits (64), Expect = 5.9
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKI 503
EEE ++ G E + K+ E++ K+K +K E +K+ M K+
Sbjct: 250 EEEMDKAGIEVSLKIMKELEEEYKQKCIEKGMAVIPASEIDKEAFMEKAKQA 301
>1pq4_A Periplasmic binding protein component of AN ABC T uptake
transporter; ZNUA, loop, metal-binding, metal binding
protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB:
2ov3_A 2ov1_A
Length = 291
Score = 28.1 bits (63), Expect = 6.0
Identities = 2/18 (11%), Positives = 3/18 (16%)
Query: 93 HGPQSHSHHHQHSHHHHH 110
G S +
Sbjct: 110 DGHDHGSESEKEKAKGAL 127
Score = 27.8 bits (62), Expect = 8.1
Identities = 2/18 (11%), Positives = 3/18 (16%)
Query: 93 HGPQSHSHHHQHSHHHHH 110
H H +
Sbjct: 109 HDGHDHGSESEKEKAKGA 126
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A
{Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Length = 831
Score = 28.7 bits (64), Expect = 6.0
Identities = 37/233 (15%), Positives = 63/233 (27%), Gaps = 32/233 (13%)
Query: 25 HHSSHHSSSVHHHSEHSKQTISHSTSSSATSVQHKM--------KRGTSPALSQAGLSHV 76
HH HHSS + H K T + + K S ++ + L
Sbjct: 4 HHHHHHSSGLVPRGSHMKSTSVSPFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFLLQQ 63
Query: 77 ASATLSQTTS-SSVSTNHGPQSHSHHHQHSHHHHHQTATASPPASAISGSKSRGIGDPIP 135
S++ ++ + T S S S P + + S S
Sbjct: 64 PSSSATKLLYLKPIQTGFPSDSDSRFVF-SKLDSLSLRRQIPISISNSVLHSSLPAAKSL 122
Query: 136 NHILLSEHKPRPSESQSSSSAQPPSSSPDCHSLPACLCYQLELE---HL--EREKREREI 190
+ S + + C +L Y E HL ERE E
Sbjct: 123 GLNVEVSESGMCSLNFRDEKTVTGAPELLCKTL-----YAWEAAISPHLAAERENATVED 177
Query: 191 RELRERELNDRIKEDLIKNASRPFDPHWLELQRSSLDALRAHALAAALHSPLP 243
+ + + +KE++ ++ A + SP P
Sbjct: 178 SVVLQM-IEKCLKEEMECGVKSEKSDLLCLVET-----------AGGVASPGP 218
>3tq8_A Dihydrofolate reductase; oxidoreductase-oxidoreductase inhib
complex; HET: NDP TOP; 1.90A {Coxiella burnetii} PDB:
3tq9_A* 3tqa_A* 3tqb_A*
Length = 178
Score = 27.9 bits (63), Expect = 6.1
Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
Query: 92 NHGPQSHSHHHQHSHHHHH 110
N Q H HHH HHHHH
Sbjct: 163 NLYFQGHHHHH---HHHHH 178
>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography,
heme, electron transport, oxidoreductase; HET: SRM;
2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1
d.134.1.1 d.134.1.1
Length = 608
Score = 28.5 bits (64), Expect = 6.2
Identities = 14/102 (13%), Positives = 33/102 (32%), Gaps = 6/102 (5%)
Query: 106 HHHHHQTATASPPASAISGSKSRGIGDPIPNHILLSEHKPRPSESQSSSSAQPPSSSPDC 165
HHHHH ++ P S + + + + L + + + ++
Sbjct: 2 HHHHHHSSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMGCQKAVSPAAETAAVS 61
Query: 166 HSLPACLCYQLELEHLEREKREREIRELRERELND--RIKED 205
S+ A +E ++E +N ++K +
Sbjct: 62 PSVDA----ARLEPRVEERDGFWVLKEEFRSGINPAEKVKIE 99
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal
transduction, nuclear transport, GTP hydrolysis, ground
state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3
PDB: 1k5g_B*
Length = 201
Score = 27.9 bits (61), Expect = 6.3
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEE 490
EE E++ G + + EK EK + K++ KE+ EE++
Sbjct: 163 EEREKKAGSGKNDHAEKVAEKLEALSVKEETKEDAEEKQ 201
>1wur_A GTP cyclohydrolase I; beta barrel, protein-inhibitor complex,
pteridine tetrahydrobiopterin, structural genomics,
NPPSFA; HET: 8DG; 1.82A {Thermus thermophilus} SCOP:
d.96.1.1 PDB: 1wm9_A* 1wuq_A*
Length = 220
Score = 28.1 bits (63), Expect = 6.3
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 395 KPVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSRNPER---IDTPRR 444
+ + K+ + L E + E + A ++ +P R + TP R
Sbjct: 12 RGSMERKMVELEDTGLTFATEVDLERLQALAAEWLQVIGEDPGREGLLKTPER 64
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor
ligand binding domain, binding, metal-binding, nucleus,
phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB:
3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A*
4lbd_A*
Length = 266
Score = 28.2 bits (63), Expect = 6.3
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 105 SHHHHHQTATASPPASAISGSKSRGIGDPIPNHILLSEHKPRPSESQSSSSAQPPSSSP 163
SHHHHH ++ P S S + + +G+ I + + + P+ Q SS
Sbjct: 4 SHHHHHHSSGLVPRGSHESYTLTPEVGELI-EKVRKAHQETFPALCQLGKYTTNNSSEQ 61
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens}
SCOP: d.58.7.1
Length = 121
Score = 27.3 bits (60), Expect = 6.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKK 483
EGE E+E +K E +++ K K K
Sbjct: 94 EGEVEKEALKKIIEDQQESLNKWKSK 119
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 28.4 bits (64), Expect = 6.4
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEE 490
GE E +E + K+ K K K ++ + +
Sbjct: 436 PGEPEFIPYIKELPKNTTSVKKAKGKNPKNTTSVKKAKGKN 476
Score = 28.4 bits (64), Expect = 6.8
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 459 GEEEEE--EKEKKKEKKKKKKKKKKKKEEEEEEEEEKKK 495
GE E KE K KK K K + ++ K K
Sbjct: 437 GEPEFIPYIKELPKNTTSVKKAKGKNPKNTTSVKKAKGK 475
Score = 28.0 bits (63), Expect = 8.4
Identities = 7/36 (19%), Positives = 19/36 (52%)
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEK 493
E+ ++ +K++ +KK+ +K+ E ++ K
Sbjct: 69 AKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_Q 4a1c_Q 4a1e_Q
Length = 183
Score = 27.6 bits (61), Expect = 6.5
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKK 483
+E + K+ K KK K KK
Sbjct: 153 QEVAAKVRKEAPKDAAKKVPKTKK 176
Score = 27.6 bits (61), Expect = 7.8
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKK 481
+E + +E ++ KK K KK K
Sbjct: 153 QEVAAKVRKEAPKDAAKKVPKTKKGKLAIG 182
Score = 27.6 bits (61), Expect = 7.8
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKK 482
+E + +E + KK K KK K
Sbjct: 153 QEVAAKVRKEAPKDAAKKVPKTKKGKLAIG 182
>2fds_A Orotidine-monophosphate-decarboxylase; TIM barrel, structural
genomics, structural genomics consortium, SGC, unknown
function; 1.72A {Plasmodium berghei} SCOP: c.1.2.3 PDB:
2aqw_A
Length = 352
Score = 28.3 bits (62), Expect = 6.5
Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 16/115 (13%)
Query: 105 SHHHHHQTATASPPAS--------AISGSKSR---GIGDP----IPNHILLSEHKPRPSE 149
SHHHHH ++ P S + + G+ DP I N + E +
Sbjct: 4 SHHHHHHSSGLVPRGSHFKTKLKNRRNEVNTCLCIGL-DPDEDDIKNFMRNEEKNGYKNV 62
Query: 150 SQSSSSAQPPSSSPDCHSLPACLCYQLELEHLEREKREREIRELRERELNDRIKE 204
+ +S + L + +E+L E + + + KE
Sbjct: 63 KNNMNSNNNRIENVIKIGKEILLTDEENIENLSEEDKFFYFFNHFCFYIINNTKE 117
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 28.6 bits (64), Expect = 6.6
Identities = 5/54 (9%), Positives = 19/54 (35%)
Query: 456 EEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPKE 509
+++ E E++ ++ ++ + + E+ + +K K
Sbjct: 4 DDDLLESEDDYGSEEALSEENVHEASANPQPEDFHGIDIVINHRLKTSLEEGKV 57
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase;
2.95A {Clostridium perfringens}
Length = 560
Score = 28.5 bits (63), Expect = 6.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 101 HHQHSHHHHHQTA 113
HH H HHHHH +
Sbjct: 3 HHHHHHHHHHSSG 15
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A
{Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A*
3k55_A
Length = 317
Score = 28.2 bits (62), Expect = 6.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 105 SHHHHHQTATASPPASAISGSKS 127
SHHHHH ++ P S + K
Sbjct: 4 SHHHHHHSSGLVPRGSHMESKKD 26
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis,
ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus
clavatus} PDB: 3k5h_A*
Length = 403
Score = 28.3 bits (64), Expect = 6.8
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 102 HQHSHHHHHQTATASPPASAISGSKSRGI 130
H SHHHHH ++ + S+ G+
Sbjct: 1 HGSSHHHHHHSSENLYFQGHMWNSRKVGV 29
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces
cerevisiae}
Length = 1030
Score = 28.3 bits (63), Expect = 6.9
Identities = 5/44 (11%), Positives = 20/44 (45%)
Query: 440 DTPRRRGGGGGGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKK 483
D ++ ++ + ++E E+ E++++ + + K+
Sbjct: 979 DVKQQYVPISYSKDPSIWDLKQELEDAEEERKLMMAEARAKRTH 1022
>3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural
genomics, unknown function, PSI-2, protein structure
initiative; 2.80A {Silicibacter pomeroyi}
Length = 378
Score = 28.0 bits (63), Expect = 6.9
Identities = 10/66 (15%), Positives = 14/66 (21%), Gaps = 10/66 (15%)
Query: 228 ALRAHALAAALHSPLPPHGM--------AAGHPAFLPPE--MGGLPHGLGMPGVDSVKHE 277
A R +A + A H A P+ + M VD
Sbjct: 277 AARMRDIALTHGIDMFVMATGGSVLADAEALHLAATIPDHACHAVWACQDMLTVDIAGGR 336
Query: 278 ALTISG 283
Sbjct: 337 GPRNID 342
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 28.3 bits (62), Expect = 7.0
Identities = 20/111 (18%), Positives = 33/111 (29%), Gaps = 13/111 (11%)
Query: 402 LARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGG----EEEEEE 457
L L + + + + + + + G G + +
Sbjct: 332 LHTIDRTILENYFSSLKNPKLREEQEAARRRQQRESKSNAATPTKGPEGKVAGPADAPMD 391
Query: 458 EGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRRPK 508
G EEE+ +K K +KKK KK M + R RPK
Sbjct: 392 SGAEEEKAGAATVKKPSPSKARKKKL---------NKKGRKMAGRKRGRPK 433
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic
initiation facto SGC, structural genomics; 1.80A
{Cryptosporidium parvum iowa II}
Length = 117
Score = 26.9 bits (59), Expect = 7.1
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 468 KKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMM 499
K K K K +++ K E ++ E K+
Sbjct: 3 KNKGKGGKNRRRGKNDSEGDKRELVFKEEGQE 34
Score = 26.5 bits (58), Expect = 9.4
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 469 KKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMM 500
K + K K +++ K + E ++ E K
Sbjct: 3 KNKGKGGKNRRRGKNDSEGDKRELVFKEEGQE 34
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B),
lyase; 1.16A {Geobacillus pallidus} PDB: 2dpp_A 1v29_A
Length = 216
Score = 27.7 bits (61), Expect = 7.2
Identities = 3/25 (12%), Positives = 5/25 (20%)
Query: 95 PQSHSHHHQHSHHHHHQTATASPPA 119
+ + HH S
Sbjct: 2 TIGQKNTNIDPRFPHHHPRPQSFWE 26
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules,
epigenetic regulation, trimethylaion of lysine residue,
ligase-DNA binding protein; HET: M3L; 2.90A {Homo
sapiens}
Length = 226
Score = 27.8 bits (61), Expect = 7.3
Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 6/104 (5%)
Query: 403 ARKREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEE 462
R+ R R + + ++ E Q M N D P+ RG E + E
Sbjct: 58 MNSRDVRARARTIIKWQDLEVGQVVMLN------YNPDNPKERGFWYDAEISRKRETRTA 111
Query: 463 EEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKKIRRR 506
E + +E + E + M+ RR
Sbjct: 112 RELYANVVLGDDSLNDCRIIFVDEVFKIERPGEGSPMVDNPMRR 155
>3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone
binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A*
3dg7_A*
Length = 367
Score = 28.0 bits (63), Expect = 7.3
Identities = 5/46 (10%), Positives = 7/46 (15%), Gaps = 13/46 (28%)
Query: 226 LDALRAHALAAALHSPLPPHGM-------------AAGHPAFLPPE 258
+ R H LA L +
Sbjct: 273 TGSTRVHHLAEGLGLDMVMGNQIDGQIGTACTVSFGTAFERTSRHA 318
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 27.9 bits (63), Expect = 7.5
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 101 HHQHSHHHHHQTA 113
HH H HHHHH +
Sbjct: 3 HHHHHHHHHHSSG 15
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 257
Score = 27.9 bits (62), Expect = 7.6
Identities = 6/42 (14%), Positives = 13/42 (30%)
Query: 450 GGEEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEE 491
G ++ + K + ++ KK+ E E
Sbjct: 214 GCSLIVLPGRKKWVKPSVAKNLARAEEYFAKKRGGETASEPA 255
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K,
structural genomi protein structure initiative; 2.35A
{Lactobacillus reuteri}
Length = 221
Score = 27.7 bits (62), Expect = 7.6
Identities = 7/49 (14%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 452 EEEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMM 500
++ + E + E KK K ++ + + E ++K+ +
Sbjct: 147 DDALTQFTPEVQAELAKKLALKLFRRYRNQ------PERRREQKVQQGL 189
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation
of protein synthesis, cryo-eletron microscopy,
translation/RNA complex; 13.80A {Escherichia coli}
Length = 501
Score = 28.2 bits (64), Expect = 7.7
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 393 TFKPVPDSKLARKREERLRKQAEREREEREKAQASMCNLLSR 434
V D K AR+ R+ RE + + ++ + N+ +
Sbjct: 253 EVTVVRDEKKAREVALY-RQGKFREVKLARQQKSKLENMFAN 293
>2xgf_A Long tail fiber protein P37; viral protein; 2.20A {Enterobacteria
phage T4}
Length = 242
Score = 27.8 bits (60), Expect = 7.7
Identities = 16/132 (12%), Positives = 44/132 (33%), Gaps = 11/132 (8%)
Query: 1 MMTHHHSSSSVTTRMREEDAQEIMHHSSHHSSSVHHHSEHSKQTISHSTSSSATSVQHKM 60
+ H HS+S+ +T + + + + + H+ ++++ S +
Sbjct: 96 VKAHSHSASASSTDL----GTKTTSSFDYGTKGTNSTGGHTHSGSGSTSTNGEHSHYIEA 151
Query: 61 KRGTSPALSQAGLSHVASATLSQTTSSSVSTNH-------GPQSHSHHHQHSHHHHHQTA 113
GT ++ ++ T+++ + +H HSH H H
Sbjct: 152 WNGTGVGGNKMSSYAISYRAGGSNTNAAGNHSHTFSFGTSSAGDHSHSVGIGAHTHTVAI 211
Query: 114 TASPPASAISGS 125
+ ++ +
Sbjct: 212 GSHGHTITVNST 223
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 7.8
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 12/36 (33%)
Query: 42 KQTISHSTSSSATSVQHKMKR---GTSPALS-QAGL 73
KQ + +S +K ++PAL+ +A +
Sbjct: 19 KQALKKLQAS--------LKLYADDSAPALAIKATM 46
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 27.8 bits (61), Expect = 7.9
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 453 EEEEEEGEEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMM 498
+ + E++ KE+ + KK ++ K KEE K +
Sbjct: 249 ADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALA 294
>3v2c_Y Ribosome-associated inhibitor A; RAIA, protein Y, stress RES
stationary phase, ribosome hibernation,
ribosome-inhibitor; 2.70A {Escherichia coli k-12} PDB:
3v2e_Y 1n3g_A 1l4s_A 1voq_a 1vos_a 1vov_a 1vox_a 1voz_a
Length = 119
Score = 26.8 bits (60), Expect = 8.0
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 466 KEKKKEKKKKKKKKKKKKEEEEEEEEEKK 494
+ K + ++ K EE EEE
Sbjct: 89 QHKGEARRAATSVKDANFVEEVEEEHHHH 117
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP
kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium
tuberculosis}
Length = 281
Score = 27.7 bits (61), Expect = 8.1
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 10/55 (18%)
Query: 105 SHHHHHQTATASPPASAISGSKSRGIGDPIPNHILLSEHKPRPSESQSSSSAQPP 159
SHHHHH ++ P S ++ G KP P+ + ++S+AQ
Sbjct: 4 SHHHHHHSSGLVPRGSHMTEPDVAG----------APASKPEPASTGAASAAQLS 48
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent
proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A*
1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E*
1ht1_E* 1ht2_E*
Length = 444
Score = 28.1 bits (63), Expect = 8.6
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 22/101 (21%)
Query: 401 KLARKRE-ERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEG 459
KL R++E + R +AE EER +L P + G E
Sbjct: 109 KLVRQQEIAKNRARAEDVAEER---------IL-----DALLPPAKNQWG-------EVE 147
Query: 460 EEEEEEKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMM 500
+ ++ +KK ++ + KE E + + +M
Sbjct: 148 NHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 27.7 bits (61), Expect = 8.8
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 6/98 (6%)
Query: 405 KREERLRKQAEREREEREKAQASMCNLLSRNPERIDTPRRRGGGGGGEEEEEEEGEEEEE 464
R + A ++ EE EKA + R + E +E + +E +
Sbjct: 100 DRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEK------MEIQEIQLKEAKH 153
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKMMMMMKK 502
E K ++ +K E + E EE+ ++
Sbjct: 154 IAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCA 191
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Length = 323
Score = 27.7 bits (61), Expect = 8.9
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 465 EKEKKKEKKKKKKKKKKKKEEEEEEEEEKKKM 496
++ E KK+K E+++ +K K
Sbjct: 278 DRCHSAELALNVITKKRKGYEDDDYVSKKSKH 309
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of
RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A
{Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A*
1qmh_A* 1qmi_A
Length = 358
Score = 27.7 bits (61), Expect = 9.0
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 100 HHHQHSHHHHHQTATASPPASA---ISGSKSRGIGDPIPNHILLS 141
HHH H HHHH + G++ G G + + + LS
Sbjct: 2 HHHHHHHHHHSSGHIEGRHMKRMIALDGAQGEGGGQILRSALSLS 46
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt,
metalloprotein, sulfenic acid, sulfinic acid, nitrIle
hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A
{Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C*
2dd4_C*
Length = 243
Score = 27.8 bits (61), Expect = 9.3
Identities = 6/26 (23%), Positives = 6/26 (23%)
Query: 94 GPQSHSHHHQHSHHHHHQTATASPPA 119
H H H H H S
Sbjct: 3 ADHDHDHDHDHDHKPAPMVEEVSDFE 28
Score = 27.4 bits (60), Expect = 9.4
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 97 SHSHHHQHSHHHHHQTATASPPASAIS 123
S H H H H H H+ A S
Sbjct: 2 SADHDHDHDHDHDHKPAPMVEEVSDFE 28
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine
kinase domain, signaling protein, transferase, inner
membrane, membrane; 2.50A {Escherichia coli}
Length = 299
Score = 27.7 bits (62), Expect = 9.4
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 101 HHQHSHHHHHQTA 113
HH H HHHHH +
Sbjct: 3 HHHHHHHHHHSSG 15
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 27.6 bits (62), Expect = 9.5
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 456 EEEGEEEEEEKEKKKEKKKKKK 477
+ E EE +EEK +++++ K+ +
Sbjct: 255 DFELEETDEEKAEREKEIKEYE 276
>3qyh_A CO-type nitrIle hydratase alpha subunit; cobalt, cysteine sulfinic
acid, lyase; 2.00A {Pseudomonas putida} PDB: 3qyg_A
3qxe_A 3qz9_A 3qz5_A
Length = 226
Score = 27.4 bits (60), Expect = 9.7
Identities = 8/36 (22%), Positives = 11/36 (30%)
Query: 84 TTSSSVSTNHGPQSHSHHHQHSHHHHHQTATASPPA 119
+ + G + H H HHH A A
Sbjct: 2 SMTGGQQMGRGSEFMGQSHTHDHHHDGYQAPPEDIA 37
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.126 0.369
Gapped
Lambda K H
0.267 0.0364 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,422,401
Number of extensions: 558119
Number of successful extensions: 9859
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8060
Number of HSP's successfully gapped: 923
Length of query: 514
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 416
Effective length of database: 3,965,535
Effective search space: 1649662560
Effective search space used: 1649662560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.5 bits)