Query psy10242
Match_columns 77
No_of_seqs 109 out of 1608
Neff 10.7
Searched_HMMs 46136
Date Fri Aug 16 21:31:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10242.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10242hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13499 EF-hand_7: EF-hand do 99.7 4.9E-16 1.1E-20 71.6 7.7 62 12-73 1-66 (66)
2 cd05022 S-100A13 S-100A13: S-1 99.7 5.8E-16 1.2E-20 75.1 7.6 68 8-75 5-75 (89)
3 cd05027 S-100B S-100B: S-100B 99.6 5.2E-15 1.1E-19 71.7 8.6 68 8-75 5-79 (88)
4 smart00027 EH Eps15 homology d 99.6 1.1E-14 2.5E-19 71.5 8.9 69 4-74 3-71 (96)
5 cd05029 S-100A6 S-100A6: S-100 99.6 8E-15 1.7E-19 71.0 8.2 69 7-75 6-79 (88)
6 COG5126 FRQ1 Ca2+-binding prot 99.6 1E-14 2.2E-19 76.9 8.7 73 3-76 12-84 (160)
7 COG5126 FRQ1 Ca2+-binding prot 99.6 9.7E-15 2.1E-19 77.0 8.2 67 9-75 90-156 (160)
8 KOG0027|consensus 99.6 2.1E-14 4.5E-19 75.6 9.0 72 5-76 2-73 (151)
9 KOG0027|consensus 99.6 2.1E-14 4.5E-19 75.6 8.0 67 10-76 84-150 (151)
10 PTZ00184 calmodulin; Provision 99.6 6.6E-14 1.4E-18 72.8 9.3 75 1-75 1-75 (149)
11 cd05026 S-100Z S-100Z: S-100Z 99.6 7.5E-14 1.6E-18 68.3 8.2 69 7-75 6-81 (93)
12 cd00213 S-100 S-100: S-100 dom 99.6 5.3E-14 1.2E-18 68.1 7.5 69 7-75 4-79 (88)
13 cd05031 S-100A10_like S-100A10 99.6 1E-13 2.2E-18 67.9 8.2 68 8-75 5-79 (94)
14 cd05025 S-100A1 S-100A1: S-100 99.5 1.7E-13 3.7E-18 66.8 8.5 68 8-75 6-80 (92)
15 PTZ00183 centrin; Provisional 99.5 4.3E-13 9.4E-18 70.5 9.3 72 3-74 9-80 (158)
16 cd00052 EH Eps15 homology doma 99.5 1.4E-13 3E-18 63.3 6.5 59 14-74 2-60 (67)
17 PF13833 EF-hand_8: EF-hand do 99.5 5.3E-13 1.1E-17 59.2 7.2 52 24-75 1-53 (54)
18 cd00051 EFh EF-hand, calcium b 99.5 6.2E-13 1.3E-17 59.6 6.9 61 13-73 2-62 (63)
19 PF14658 EF-hand_9: EF-hand do 99.5 1.2E-12 2.7E-17 59.7 7.3 62 16-77 3-66 (66)
20 cd05023 S-100A11 S-100A11: S-1 99.5 2.1E-12 4.5E-17 62.7 8.6 69 7-75 5-80 (89)
21 KOG0037|consensus 99.4 2.4E-12 5.2E-17 70.4 8.1 67 9-75 122-188 (221)
22 PTZ00183 centrin; Provisional 99.4 4.4E-12 9.6E-17 66.6 7.8 65 11-75 90-154 (158)
23 PTZ00184 calmodulin; Provision 99.4 6.8E-12 1.5E-16 65.2 8.4 66 10-75 83-148 (149)
24 KOG0041|consensus 99.4 4.9E-12 1.1E-16 68.7 6.6 72 4-75 92-163 (244)
25 KOG0031|consensus 99.4 1.4E-11 2.9E-16 64.5 7.9 70 4-77 25-94 (171)
26 cd00252 SPARC_EC SPARC_EC; ext 99.4 1.2E-11 2.5E-16 62.7 7.3 64 7-74 44-107 (116)
27 KOG0034|consensus 99.3 2.3E-11 5E-16 66.0 7.6 66 11-76 104-176 (187)
28 KOG0028|consensus 99.3 3.4E-11 7.4E-16 63.3 7.5 73 4-76 26-98 (172)
29 PF12763 EF-hand_4: Cytoskelet 99.3 4.1E-11 8.9E-16 59.6 7.4 69 1-73 1-69 (104)
30 cd05030 calgranulins Calgranul 99.3 4E-11 8.7E-16 58.1 7.2 68 8-75 5-79 (88)
31 KOG0031|consensus 99.3 4.9E-11 1.1E-15 62.4 7.7 65 10-74 100-164 (171)
32 KOG0028|consensus 99.3 6.5E-11 1.4E-15 62.3 7.4 67 9-75 104-170 (172)
33 KOG0030|consensus 99.2 9.7E-11 2.1E-15 60.4 6.3 72 4-75 4-77 (152)
34 PLN02964 phosphatidylserine de 99.1 1.7E-09 3.7E-14 67.6 8.9 69 7-75 175-243 (644)
35 KOG0036|consensus 99.0 3.7E-09 8.1E-14 62.8 8.7 72 4-75 7-79 (463)
36 cd05024 S-100A10 S-100A10: A s 99.0 7.7E-09 1.7E-13 50.2 8.4 67 8-75 5-76 (91)
37 KOG0030|consensus 99.0 3E-09 6.4E-14 55.0 6.8 64 10-74 87-150 (152)
38 PLN02964 phosphatidylserine de 99.0 4.5E-09 9.9E-14 65.7 8.1 68 4-75 136-207 (644)
39 KOG0044|consensus 99.0 2.1E-09 4.6E-14 58.6 6.0 66 10-75 63-128 (193)
40 PF00036 EF-hand_1: EF hand; 99.0 1.9E-09 4.1E-14 42.0 3.9 27 13-39 2-28 (29)
41 PF13405 EF-hand_6: EF-hand do 98.9 2.7E-09 5.9E-14 42.1 3.9 30 12-41 1-31 (31)
42 KOG0037|consensus 98.9 1.2E-08 2.6E-13 56.2 6.8 65 10-74 56-121 (221)
43 KOG0036|consensus 98.9 2.3E-08 5.1E-13 59.5 7.3 68 7-74 78-145 (463)
44 KOG0046|consensus 98.8 4.8E-08 1.1E-12 59.7 8.1 72 3-75 11-85 (627)
45 KOG0040|consensus 98.8 3.6E-08 7.7E-13 66.1 7.6 73 4-76 2246-2325(2399)
46 KOG0377|consensus 98.8 4.8E-08 1E-12 58.9 7.4 63 12-74 548-614 (631)
47 KOG0044|consensus 98.8 4.6E-08 1E-12 53.4 6.4 62 13-74 102-174 (193)
48 PF00036 EF-hand_1: EF hand; 98.8 2.9E-08 6.2E-13 38.6 3.8 28 48-75 1-28 (29)
49 KOG0038|consensus 98.7 1.2E-07 2.6E-12 49.7 5.5 64 12-75 109-177 (189)
50 PRK12309 transaldolase/EF-hand 98.6 1.8E-07 3.8E-12 56.0 6.3 53 10-75 333-385 (391)
51 PF13202 EF-hand_5: EF hand; P 98.6 9.5E-08 2.1E-12 35.9 3.3 24 13-36 1-24 (25)
52 KOG0034|consensus 98.6 5.6E-07 1.2E-11 49.1 6.6 66 4-73 26-93 (187)
53 PF14788 EF-hand_10: EF hand; 98.5 1.5E-06 3.3E-11 37.8 6.0 49 27-75 1-49 (51)
54 KOG4223|consensus 98.5 4.9E-07 1.1E-11 52.5 4.8 66 9-74 75-140 (325)
55 KOG4223|consensus 98.4 5.4E-07 1.2E-11 52.3 3.4 58 14-71 244-301 (325)
56 PF10591 SPARC_Ca_bdg: Secrete 98.2 5.5E-07 1.2E-11 45.5 1.6 62 9-72 52-113 (113)
57 PF13202 EF-hand_5: EF hand; P 98.2 6.4E-06 1.4E-10 30.8 3.4 25 49-73 1-25 (25)
58 PF13405 EF-hand_6: EF-hand do 98.1 1.3E-05 2.8E-10 31.4 3.6 27 48-74 1-27 (31)
59 smart00054 EFh EF-hand, calciu 98.0 1.6E-05 3.5E-10 29.5 3.0 27 13-39 2-28 (29)
60 KOG4251|consensus 97.9 1.1E-05 2.5E-10 45.8 3.0 63 10-72 100-165 (362)
61 PF09279 EF-hand_like: Phospho 97.9 6.7E-05 1.5E-09 35.8 5.3 63 12-75 1-69 (83)
62 KOG1955|consensus 97.8 0.00014 3E-09 45.1 6.5 68 4-73 224-291 (737)
63 PF13833 EF-hand_8: EF-hand do 97.8 9.3E-05 2E-09 32.3 4.2 28 12-39 26-53 (54)
64 KOG1029|consensus 97.7 0.0001 2.3E-09 47.7 4.8 63 9-73 193-255 (1118)
65 PF13499 EF-hand_7: EF-hand do 97.7 0.00018 4E-09 32.6 4.4 28 10-37 39-66 (66)
66 smart00054 EFh EF-hand, calciu 97.6 0.00014 3.1E-09 26.8 3.0 27 49-75 2-28 (29)
67 KOG0042|consensus 97.5 0.00059 1.3E-08 43.0 5.7 71 4-74 586-656 (680)
68 KOG4065|consensus 97.4 0.00097 2.1E-08 34.0 5.4 58 15-72 71-142 (144)
69 PF05517 p25-alpha: p25-alpha 97.3 0.0068 1.5E-07 32.3 8.2 64 12-75 3-69 (154)
70 KOG2643|consensus 97.3 0.00012 2.6E-09 44.6 1.4 53 25-77 402-455 (489)
71 KOG0377|consensus 97.3 0.0043 9.3E-08 38.4 7.7 65 10-74 463-574 (631)
72 KOG2243|consensus 97.3 0.00081 1.8E-08 46.7 4.9 57 16-73 4062-4118(5019)
73 PF14788 EF-hand_10: EF hand; 97.1 0.002 4.4E-08 28.1 4.0 30 11-40 21-50 (51)
74 KOG2643|consensus 97.1 0.00081 1.8E-08 41.1 3.6 64 12-75 234-314 (489)
75 cd05022 S-100A13 S-100A13: S-1 97.1 0.0015 3.2E-08 31.8 3.6 30 11-40 47-76 (89)
76 KOG2562|consensus 96.9 0.005 1.1E-07 38.0 5.5 66 6-74 273-342 (493)
77 KOG4666|consensus 96.8 0.0035 7.5E-08 37.3 4.3 63 11-74 296-358 (412)
78 cd05026 S-100Z S-100Z: S-100Z 96.8 0.0037 8.1E-08 30.5 3.7 31 10-40 52-82 (93)
79 cd00252 SPARC_EC SPARC_EC; ext 96.7 0.0029 6.4E-08 32.2 3.3 28 11-38 80-107 (116)
80 KOG0169|consensus 96.7 0.0072 1.6E-07 39.3 5.5 68 7-74 132-199 (746)
81 cd05023 S-100A11 S-100A11: S-1 96.6 0.0052 1.1E-07 29.8 3.7 31 10-40 51-81 (89)
82 cd05024 S-100A10 S-100A10: A s 96.6 0.0038 8.3E-08 30.5 2.9 32 9-40 46-77 (91)
83 cd05030 calgranulins Calgranul 96.5 0.0074 1.6E-07 29.1 3.7 31 10-40 50-80 (88)
84 cd05029 S-100A6 S-100A6: S-100 96.4 0.0088 1.9E-07 28.9 3.7 30 11-40 51-80 (88)
85 KOG1029|consensus 96.4 0.034 7.3E-07 36.8 7.0 66 5-73 10-75 (1118)
86 KOG2562|consensus 96.4 0.014 3.1E-07 36.2 5.2 61 11-71 351-420 (493)
87 cd05025 S-100A1 S-100A1: S-100 96.3 0.011 2.4E-07 28.6 3.7 31 10-40 51-81 (92)
88 cd00052 EH Eps15 homology doma 96.2 0.014 3E-07 26.1 3.6 30 11-40 33-62 (67)
89 cd00051 EFh EF-hand, calcium b 96.2 0.015 3.2E-07 25.0 3.6 27 11-37 36-62 (63)
90 KOG0035|consensus 96.2 0.041 8.8E-07 36.7 6.7 72 5-76 741-817 (890)
91 KOG4251|consensus 96.2 0.021 4.5E-07 33.0 4.7 60 12-71 282-341 (362)
92 cd05031 S-100A10_like S-100A10 96.2 0.011 2.4E-07 28.7 3.3 32 10-41 50-81 (94)
93 PF08726 EFhand_Ca_insen: Ca2+ 96.1 0.01 2.2E-07 27.6 2.7 55 10-72 5-66 (69)
94 cd05027 S-100B S-100B: S-100B 96.0 0.019 4.1E-07 27.8 3.7 31 10-40 50-80 (88)
95 KOG4578|consensus 96.0 0.01 2.2E-07 35.4 3.0 61 12-74 334-397 (421)
96 PF14658 EF-hand_9: EF-hand do 96.0 0.022 4.7E-07 26.2 3.5 30 10-39 34-64 (66)
97 smart00027 EH Eps15 homology d 95.9 0.026 5.7E-07 27.5 4.0 30 11-40 44-73 (96)
98 KOG4666|consensus 95.9 0.046 1E-06 32.8 5.4 67 9-75 257-324 (412)
99 PF12763 EF-hand_4: Cytoskelet 95.8 0.032 6.9E-07 27.9 4.1 30 11-40 43-72 (104)
100 PRK12309 transaldolase/EF-hand 95.8 0.028 6.1E-07 34.3 4.4 36 5-40 351-386 (391)
101 KOG1707|consensus 95.5 0.029 6.4E-07 35.8 3.8 67 4-73 308-375 (625)
102 KOG3555|consensus 95.4 0.042 9.1E-07 33.2 4.1 67 5-75 244-310 (434)
103 KOG0751|consensus 95.4 0.15 3.3E-06 32.4 6.5 61 12-72 34-99 (694)
104 KOG4347|consensus 95.4 0.037 8.1E-07 35.7 4.0 57 10-67 554-610 (671)
105 KOG0998|consensus 95.4 0.0089 1.9E-07 39.7 1.4 68 4-73 276-343 (847)
106 PF05042 Caleosin: Caleosin re 95.3 0.22 4.7E-06 27.3 6.4 63 10-73 95-164 (174)
107 cd00213 S-100 S-100: S-100 dom 95.3 0.051 1.1E-06 25.9 3.7 31 10-40 50-80 (88)
108 KOG0038|consensus 95.2 0.066 1.4E-06 28.6 4.1 59 16-74 76-135 (189)
109 PF08976 DUF1880: Domain of un 95.0 0.042 9E-07 28.0 2.8 32 43-74 3-34 (118)
110 PF05042 Caleosin: Caleosin re 94.8 0.32 7E-06 26.6 6.3 33 11-43 7-39 (174)
111 PF09069 EF-hand_3: EF-hand; 94.5 0.26 5.7E-06 24.1 7.1 62 11-75 3-75 (90)
112 KOG0751|consensus 93.9 0.2 4.4E-06 31.9 4.6 63 8-70 176-239 (694)
113 KOG1707|consensus 93.9 0.35 7.7E-06 31.3 5.7 51 2-52 186-237 (625)
114 KOG2871|consensus 92.6 0.23 4.9E-06 30.4 3.3 38 10-47 308-345 (449)
115 PLN02222 phosphoinositide phos 91.8 1.6 3.5E-05 28.4 6.5 63 11-75 25-90 (581)
116 PF10591 SPARC_Ca_bdg: Secrete 91.4 0.37 8.1E-06 24.4 3.0 24 12-35 89-112 (113)
117 PLN02952 phosphoinositide phos 91.4 1.3 2.9E-05 28.9 5.9 51 24-75 13-65 (599)
118 PF14513 DAG_kinase_N: Diacylg 91.1 0.33 7.1E-06 25.6 2.6 50 26-77 6-62 (138)
119 PLN02228 Phosphoinositide phos 90.9 3.1 6.7E-05 27.1 7.1 63 10-74 23-91 (567)
120 KOG2301|consensus 90.8 0.2 4.3E-06 35.8 2.0 70 4-74 1410-1483(1592)
121 KOG1265|consensus 90.6 2.5 5.5E-05 29.1 6.7 64 11-74 221-298 (1189)
122 PLN02230 phosphoinositide phos 90.3 3.5 7.6E-05 27.1 7.0 64 10-74 28-101 (598)
123 KOG0998|consensus 90.2 0.18 4E-06 33.8 1.5 69 4-74 4-72 (847)
124 KOG3866|consensus 89.8 1.4 2.9E-05 26.7 4.6 60 16-75 249-324 (442)
125 KOG1955|consensus 89.4 0.5 1.1E-05 30.2 2.8 31 9-39 263-293 (737)
126 cd07313 terB_like_2 tellurium 88.2 1.5 3.3E-05 21.4 3.7 29 44-72 34-62 (104)
127 KOG0041|consensus 86.1 1.7 3.7E-05 24.7 3.3 27 49-75 101-127 (244)
128 PF08414 NADPH_Ox: Respiratory 85.2 3.4 7.3E-05 20.7 3.8 58 12-74 31-91 (100)
129 PLN02952 phosphoinositide phos 84.5 9.4 0.0002 25.2 7.1 63 11-74 38-109 (599)
130 PF00404 Dockerin_1: Dockerin 83.3 1.6 3.4E-05 15.4 2.1 15 21-35 1-15 (21)
131 PLN02223 phosphoinositide phos 82.0 12 0.00025 24.5 6.2 66 9-75 14-92 (537)
132 KOG3555|consensus 80.5 1.8 3.8E-05 26.6 2.1 63 11-73 211-276 (434)
133 PF01885 PTS_2-RNA: RNA 2'-pho 80.3 7.4 0.00016 21.6 4.4 37 21-57 26-62 (186)
134 TIGR01848 PHA_reg_PhaR polyhyd 79.8 6.3 0.00014 20.0 5.1 43 19-61 11-63 (107)
135 TIGR01639 P_fal_TIGR01639 Plas 79.0 4.7 0.0001 18.1 3.7 32 26-57 8-39 (61)
136 PRK00819 RNA 2'-phosphotransfe 78.6 9.1 0.0002 21.2 4.9 36 22-57 28-63 (179)
137 PHA02105 hypothetical protein 78.3 5 0.00011 18.0 3.7 47 27-73 4-55 (68)
138 COG4103 Uncharacterized protei 78.2 8.6 0.00019 20.6 4.9 60 15-77 34-96 (148)
139 cd00086 homeodomain Homeodomai 77.7 4.6 9.9E-05 17.3 6.0 46 3-55 5-50 (59)
140 PF00046 Homeobox: Homeobox do 77.7 4.6 0.0001 17.3 6.1 45 3-54 5-49 (57)
141 PF12174 RST: RCD1-SRO-TAF4 (R 77.5 3 6.4E-05 19.4 2.0 31 44-74 22-52 (70)
142 PF07879 PHB_acc_N: PHB/PHA ac 77.4 5.7 0.00012 18.2 3.7 37 19-55 11-57 (64)
143 KOG4070|consensus 77.1 7 0.00015 21.2 3.5 60 14-73 18-83 (180)
144 KOG3449|consensus 76.9 8.1 0.00018 19.7 6.0 45 13-57 3-47 (112)
145 KOG0169|consensus 76.1 22 0.00047 24.3 6.3 60 11-74 172-231 (746)
146 PF07308 DUF1456: Protein of u 75.8 6.6 0.00014 18.2 4.9 31 29-59 15-45 (68)
147 PF09883 DUF2110: Uncharacteri 75.6 6.5 0.00014 22.5 3.3 47 3-49 142-189 (225)
148 PF03672 UPF0154: Uncharacteri 75.1 6.9 0.00015 18.0 3.7 32 25-56 29-60 (64)
149 PRK00523 hypothetical protein; 74.8 7.5 0.00016 18.3 3.6 32 25-56 37-68 (72)
150 KOG0040|consensus 74.8 18 0.0004 27.2 5.7 47 12-58 2297-2345(2399)
151 PF02761 Cbl_N2: CBL proto-onc 74.8 8.3 0.00018 18.8 6.7 49 25-73 20-68 (85)
152 KOG1954|consensus 73.8 8.3 0.00018 24.4 3.7 56 13-71 446-501 (532)
153 KOG4301|consensus 73.5 15 0.00032 22.8 4.6 68 5-73 102-171 (434)
154 KOG1264|consensus 72.6 12 0.00026 26.1 4.4 71 6-77 138-210 (1267)
155 COG2818 Tag 3-methyladenine DN 72.5 3.9 8.4E-05 22.8 1.9 43 10-52 54-96 (188)
156 PF01023 S_100: S-100/ICaBP ty 72.3 6.5 0.00014 16.4 4.6 31 9-39 4-36 (44)
157 PF10437 Lip_prot_lig_C: Bacte 72.2 9.1 0.0002 18.1 3.1 43 29-73 43-86 (86)
158 PF13551 HTH_29: Winged helix- 71.4 10 0.00023 18.4 6.2 51 5-55 58-110 (112)
159 PF09336 Vps4_C: Vps4 C termin 71.3 7.9 0.00017 17.5 2.6 25 27-51 29-53 (62)
160 PF05383 La: La domain; Inter 70.6 5.8 0.00013 17.9 2.0 22 15-36 19-40 (61)
161 KOG4718|consensus 69.1 19 0.00042 20.7 4.2 56 1-56 89-146 (235)
162 KOG4578|consensus 68.6 5.6 0.00012 24.4 2.2 29 12-40 371-399 (421)
163 KOG0506|consensus 67.9 28 0.0006 22.8 5.0 58 17-74 92-157 (622)
164 PF03979 Sigma70_r1_1: Sigma-7 67.5 7.9 0.00017 18.4 2.3 45 10-58 6-50 (82)
165 PRK09430 djlA Dna-J like membr 66.9 24 0.00051 20.8 4.5 52 23-75 67-120 (267)
166 PHA02943 hypothetical protein; 65.8 20 0.00044 19.6 4.5 49 1-57 1-49 (165)
167 PF05099 TerB: Tellurite resis 65.6 3 6.6E-05 21.4 0.7 49 25-73 37-87 (140)
168 PRK01844 hypothetical protein; 64.0 15 0.00032 17.3 3.6 32 25-56 36-67 (72)
169 PF08461 HTH_12: Ribonuclease 62.4 14 0.00031 16.8 2.6 35 25-59 11-45 (66)
170 KOG4004|consensus 61.9 7.2 0.00016 22.3 1.7 25 12-36 223-247 (259)
171 TIGR01565 homeo_ZF_HD homeobox 60.5 15 0.00033 16.4 4.5 34 3-41 6-43 (58)
172 KOG2278|consensus 59.9 20 0.00044 20.0 3.1 38 20-57 27-64 (207)
173 TIGR03573 WbuX N-acetyl sugar 59.9 37 0.00081 20.7 4.9 31 26-56 301-331 (343)
174 KOG4347|consensus 59.8 25 0.00053 23.7 3.9 31 45-75 553-583 (671)
175 PF09373 PMBR: Pseudomurein-bi 59.4 11 0.00025 14.6 2.0 14 61-74 2-15 (33)
176 TIGR00624 tag DNA-3-methyladen 58.8 14 0.00029 20.6 2.4 46 9-54 51-96 (179)
177 PF09068 EF-hand_2: EF hand; 58.2 26 0.00056 18.3 7.0 65 9-73 39-123 (127)
178 PRK10353 3-methyl-adenine DNA 55.4 12 0.00026 21.0 1.9 46 9-54 52-97 (187)
179 PF14069 SpoVIF: Stage VI spor 53.9 25 0.00054 16.9 6.9 64 5-74 10-77 (79)
180 TIGR02613 mob_myst_B mobile my 53.9 32 0.00069 19.0 3.4 22 22-43 126-147 (186)
181 COG3763 Uncharacterized protei 53.9 24 0.00051 16.6 4.1 32 25-56 36-67 (71)
182 PRK14074 rpsF 30S ribosomal pr 53.6 42 0.00092 19.8 3.8 69 3-74 12-80 (257)
183 cd08032 LARP_7 La RNA-binding 53.1 26 0.00057 16.9 3.6 38 16-53 28-65 (82)
184 PF11593 Med3: Mediator comple 53.1 49 0.0011 20.7 4.2 11 63-73 42-52 (379)
185 PF12486 DUF3702: ImpA domain 52.8 36 0.00078 18.4 3.5 32 9-40 67-98 (148)
186 KOG4403|consensus 52.5 62 0.0013 21.0 5.0 30 10-39 67-96 (575)
187 smart00389 HOX Homeodomain. DN 52.1 20 0.00042 15.1 5.9 45 4-55 6-50 (56)
188 PF13829 DUF4191: Domain of un 51.8 46 0.001 19.3 4.4 36 21-56 161-196 (224)
189 KOG0039|consensus 50.9 59 0.0013 21.9 4.6 64 9-73 16-87 (646)
190 PF06569 DUF1128: Protein of u 50.9 27 0.00059 16.4 2.7 14 43-56 53-66 (71)
191 PF07199 DUF1411: Protein of u 50.8 45 0.00098 18.9 6.3 59 16-74 127-185 (194)
192 PF06163 DUF977: Bacterial pro 50.8 35 0.00076 18.0 3.0 35 1-36 1-35 (127)
193 PF07499 RuvA_C: RuvA, C-termi 48.9 23 0.00049 14.9 4.1 39 31-73 4-42 (47)
194 PF02885 Glycos_trans_3N: Glyc 48.4 27 0.00059 15.7 3.8 14 27-40 14-27 (66)
195 PF11116 DUF2624: Protein of u 48.2 34 0.00073 16.7 5.8 34 26-59 13-46 (85)
196 cd07316 terB_like_DjlA N-termi 48.1 33 0.00072 16.6 4.9 14 6-19 17-30 (106)
197 PF03352 Adenine_glyco: Methyl 47.9 9.6 0.00021 21.2 0.8 46 10-55 48-93 (179)
198 TIGR02736 cbb3_Q_epsi cytochro 46.9 22 0.00048 15.9 1.7 22 52-73 19-40 (56)
199 cd08324 CARD_NOD1_CARD4 Caspas 46.8 36 0.00078 16.6 4.7 48 23-75 25-72 (85)
200 KOG0843|consensus 46.0 55 0.0012 18.5 4.9 43 3-52 107-149 (197)
201 COG1460 Uncharacterized protei 45.9 43 0.00094 17.3 3.3 23 31-53 83-105 (114)
202 PF12631 GTPase_Cys_C: Catalyt 45.7 33 0.00071 15.8 3.7 30 27-56 39-72 (73)
203 TIGR02675 tape_meas_nterm tape 44.9 35 0.00076 15.9 2.5 32 6-39 11-42 (75)
204 PF00690 Cation_ATPase_N: Cati 44.3 33 0.00071 15.4 2.6 16 43-58 20-35 (69)
205 PF08002 DUF1697: Protein of u 44.2 22 0.00047 18.7 1.7 23 19-41 10-32 (137)
206 PRK09389 (R)-citramalate synth 43.6 88 0.0019 20.3 4.5 45 31-75 321-367 (488)
207 cd08033 LARP_6 La RNA-binding 43.5 39 0.00084 16.0 3.7 38 18-55 25-62 (77)
208 PRK03968 DNA primase large sub 43.3 56 0.0012 20.6 3.5 35 21-55 115-149 (399)
209 PTZ00315 2'-phosphotransferase 43.3 1E+02 0.0022 20.7 4.9 36 21-56 399-434 (582)
210 PTZ00373 60S Acidic ribosomal 43.2 48 0.001 17.0 4.7 42 16-57 8-49 (112)
211 PF07862 Nif11: Nitrogen fixat 42.8 30 0.00064 14.5 2.7 21 29-49 28-48 (49)
212 cd07176 terB tellurite resista 42.7 17 0.00036 17.7 1.1 14 5-18 19-32 (111)
213 PF06226 DUF1007: Protein of u 42.5 25 0.00055 19.9 1.9 22 19-40 58-79 (212)
214 PF09127 Leuk-A4-hydro_C: Leuk 41.5 56 0.0012 17.3 3.0 36 3-39 47-82 (143)
215 PF09808 SNAPc_SNAP43: Small n 41.1 47 0.001 18.5 2.8 12 63-74 18-29 (194)
216 KOG4154|consensus 40.1 39 0.00085 18.1 2.2 32 10-41 139-170 (178)
217 PF04077 DsrH: DsrH like prote 39.6 30 0.00064 16.7 1.7 14 62-75 70-83 (88)
218 PF08355 EF_assoc_1: EF hand a 39.4 36 0.00078 16.1 1.9 17 58-74 13-29 (76)
219 PF04876 Tenui_NCP: Tenuivirus 39.0 51 0.0011 18.0 2.6 19 58-76 94-112 (175)
220 KOG0662|consensus 38.8 34 0.00075 19.6 2.0 60 10-69 84-145 (292)
221 PF04081 DNA_pol_delta_4: DNA 38.5 63 0.0014 17.0 5.4 55 4-59 55-113 (124)
222 PF06207 DUF1002: Protein of u 38.2 82 0.0018 18.3 3.6 46 29-74 173-222 (225)
223 PF06784 UPF0240: Uncharacteri 38.2 74 0.0016 17.7 4.5 42 17-58 105-148 (179)
224 PRK13510 sulfur transfer compl 37.6 41 0.00089 16.5 2.0 16 60-75 73-88 (95)
225 PF09312 SurA_N: SurA N-termin 37.1 60 0.0013 16.4 3.3 13 63-75 98-110 (118)
226 smart00513 SAP Putative DNA-bi 37.0 32 0.0007 13.3 2.4 18 27-44 3-20 (35)
227 PRK08181 transposase; Validate 36.7 93 0.002 18.4 4.6 47 25-74 4-50 (269)
228 PF13720 Acetyltransf_11: Udp 36.5 52 0.0011 15.7 2.2 34 3-39 26-59 (83)
229 PF03963 FlgD: Flagellar hook 36.4 45 0.00097 16.0 2.0 17 59-75 26-42 (81)
230 PF02037 SAP: SAP domain; Int 35.3 36 0.00078 13.3 2.0 17 28-44 4-20 (35)
231 PLN02208 glycosyltransferase f 34.9 1.2E+02 0.0027 19.3 4.4 23 19-41 377-399 (442)
232 cd07909 YciF YciF bacterial st 34.9 47 0.001 17.8 2.1 22 7-28 46-67 (147)
233 cd00171 Sec7 Sec7 domain; Doma 34.7 85 0.0018 17.4 4.0 30 26-55 148-179 (185)
234 PF08006 DUF1700: Protein of u 34.3 63 0.0014 17.6 2.6 8 10-17 7-14 (181)
235 cd05833 Ribosomal_P2 Ribosomal 34.2 70 0.0015 16.3 6.0 51 17-72 7-57 (109)
236 PF05240 APOBEC_C: APOBEC-like 34.0 38 0.00082 15.0 1.4 13 64-76 21-33 (55)
237 COG1859 KptA RNA:NAD 2'-phosph 33.4 1E+02 0.0022 17.8 3.9 35 22-56 54-88 (211)
238 PF04433 SWIRM: SWIRM domain; 33.2 20 0.00043 17.0 0.5 18 21-38 47-64 (86)
239 PF06384 ICAT: Beta-catenin-in 33.2 64 0.0014 15.5 2.7 21 32-52 21-41 (78)
240 KOG2116|consensus 33.1 68 0.0015 21.9 2.9 38 22-59 535-573 (738)
241 PF05872 DUF853: Bacterial pro 33.0 1.2E+02 0.0026 20.0 3.8 37 4-40 121-157 (502)
242 cd08028 LARP_3 La RNA-binding 32.8 65 0.0014 15.5 3.3 37 19-56 30-66 (82)
243 KOG1265|consensus 32.8 1.9E+02 0.0042 21.0 5.1 40 33-75 210-249 (1189)
244 PF07492 Trehalase_Ca-bi: Neut 32.7 13 0.00029 14.3 -0.1 14 18-31 6-19 (30)
245 PTZ00056 glutathione peroxidas 32.6 95 0.002 17.3 3.3 33 26-61 163-195 (199)
246 PF09107 SelB-wing_3: Elongati 32.4 51 0.0011 14.2 2.4 30 25-59 8-37 (50)
247 PF08839 CDT1: DNA replication 32.4 88 0.0019 16.9 4.1 49 8-56 3-58 (163)
248 PF05901 Excalibur: Excalibur 32.3 26 0.00056 14.0 0.7 9 19-27 26-34 (37)
249 PF10891 DUF2719: Protein of u 32.2 47 0.001 16.0 1.6 12 61-72 33-44 (81)
250 PF08671 SinI: Anti-repressor 31.8 41 0.00089 12.9 2.9 11 42-52 15-25 (30)
251 PF11848 DUF3368: Domain of un 31.7 50 0.0011 13.9 3.8 31 25-55 15-46 (48)
252 cd08809 CARD_CARD9 Caspase act 31.6 72 0.0016 15.6 3.4 48 25-74 28-75 (86)
253 COG3383 Uncharacterized anaero 30.7 1.4E+02 0.0031 21.2 4.0 35 10-44 713-747 (978)
254 COG5069 SAC6 Ca2+-binding acti 30.4 81 0.0018 20.8 2.8 38 10-47 484-521 (612)
255 KOG3442|consensus 30.3 92 0.002 16.5 3.4 37 25-62 53-93 (132)
256 KOG0488|consensus 30.2 1.3E+02 0.0029 18.3 4.7 44 4-54 178-221 (309)
257 PF14754 IFR3_antag: Papain-li 29.8 11 0.00024 20.6 -0.8 37 8-44 173-209 (249)
258 PF05604 DUF776: Protein of un 29.7 65 0.0014 17.9 2.1 29 1-29 1-29 (178)
259 KOG3077|consensus 29.6 1.3E+02 0.0028 18.0 6.1 64 10-73 63-127 (260)
260 PF11020 DUF2610: Domain of un 29.4 78 0.0017 15.3 2.9 45 29-73 30-75 (82)
261 cd08819 CARD_MDA5_2 Caspase ac 29.2 82 0.0018 15.5 5.2 48 25-75 31-78 (88)
262 PF09851 SHOCT: Short C-termin 29.2 46 0.00099 12.6 3.4 24 9-38 4-27 (31)
263 PF09967 DUF2201: VWA-like dom 29.1 55 0.0012 16.8 1.8 18 23-40 6-23 (126)
264 PF03556 Cullin_binding: Culli 29.0 91 0.002 16.0 3.0 18 56-73 99-116 (117)
265 TIGR03296 M6dom_TIGR03296 M6 f 28.6 27 0.00058 20.7 0.6 16 17-32 92-107 (286)
266 COG5562 Phage envelope protein 28.5 44 0.00095 17.8 1.3 19 56-74 81-99 (137)
267 cd08327 CARD_RAIDD Caspase act 28.3 86 0.0019 15.5 4.2 47 24-75 32-78 (94)
268 PF09454 Vps23_core: Vps23 cor 27.8 70 0.0015 14.6 1.8 14 61-74 37-50 (65)
269 PF02337 Gag_p10: Retroviral G 27.8 88 0.0019 15.4 3.0 34 1-39 1-36 (90)
270 PF08485 Polysacc_syn_2C: Poly 27.5 66 0.0014 13.9 2.1 22 19-40 23-44 (48)
271 PHA02975 hypothetical protein; 27.4 50 0.0011 15.4 1.2 11 65-75 19-29 (69)
272 PF14294 DUF4372: Domain of un 27.4 80 0.0017 14.9 3.5 30 44-73 14-45 (76)
273 smart00715 LA Domain in the RN 27.3 83 0.0018 15.0 3.6 37 17-54 27-63 (80)
274 PF14237 DUF4339: Domain of un 27.3 26 0.00056 14.4 0.3 19 21-39 7-25 (45)
275 PF14848 HU-DNA_bdg: DNA-bindi 26.9 1E+02 0.0022 15.8 3.9 33 24-56 25-57 (124)
276 cd07894 Adenylation_RNA_ligase 26.7 1.2E+02 0.0027 18.7 3.1 41 17-57 131-181 (342)
277 cd03035 ArsC_Yffb Arsenate Red 26.7 82 0.0018 15.6 2.1 46 27-75 35-83 (105)
278 PRK14981 DNA-directed RNA poly 26.1 1E+02 0.0022 15.6 3.7 14 43-56 78-91 (112)
279 TIGR00135 gatC glutamyl-tRNA(G 25.9 92 0.002 15.0 3.7 23 29-51 2-24 (93)
280 PF07483 W_rich_C: Tryptophan- 25.4 96 0.0021 15.9 2.2 20 8-28 89-108 (109)
281 smart00222 Sec7 Sec7 domain. D 25.3 1.3E+02 0.0029 16.6 4.0 13 27-39 151-163 (187)
282 PRK07571 bidirectional hydroge 25.2 1.3E+02 0.0029 16.6 5.3 40 3-42 14-66 (169)
283 TIGR03798 ocin_TIGR03798 bacte 25.2 80 0.0017 14.1 3.8 25 28-52 25-49 (64)
284 PF15144 DUF4576: Domain of un 24.9 30 0.00065 16.6 0.3 32 25-56 38-69 (88)
285 KOG4629|consensus 24.8 2.5E+02 0.0054 19.6 5.8 57 12-75 405-461 (714)
286 COG2168 DsrH Uncharacterized c 24.8 76 0.0016 15.9 1.7 16 61-76 75-90 (96)
287 PF09494 Slx4: Slx4 endonuclea 24.7 83 0.0018 14.1 3.5 26 28-53 25-54 (64)
288 PF11363 DUF3164: Protein of u 24.5 1.5E+02 0.0032 16.8 4.9 18 55-72 127-144 (195)
289 PHA02819 hypothetical protein; 24.5 60 0.0013 15.2 1.2 11 65-75 19-29 (71)
290 cd08330 CARD_ASC_NALP1 Caspase 24.5 96 0.0021 14.7 4.0 45 25-74 27-71 (82)
291 PF13373 DUF2407_C: DUF2407 C- 24.4 1E+02 0.0022 16.5 2.3 19 3-21 9-27 (140)
292 KOG4286|consensus 24.4 1.3E+02 0.0029 21.2 3.1 48 12-59 471-518 (966)
293 PF14297 DUF4373: Domain of un 24.3 96 0.0021 14.7 2.4 10 29-38 59-68 (87)
294 PF05788 Orbi_VP1: Orbivirus R 24.2 1.1E+02 0.0025 22.3 2.9 39 21-59 1131-1169(1301)
295 PHA02844 putative transmembran 24.2 62 0.0013 15.4 1.2 11 65-75 19-29 (75)
296 cd01671 CARD Caspase activatio 24.1 88 0.0019 14.2 3.5 46 25-75 25-70 (80)
297 PF07531 TAFH: NHR1 homology t 24.0 96 0.0021 15.5 2.0 26 47-75 27-52 (96)
298 cd08029 LA_like_fungal La-moti 23.9 98 0.0021 14.6 3.4 22 18-39 25-46 (76)
299 TIGR02875 spore_0_A sporulatio 23.7 1.5E+02 0.0033 16.8 3.5 31 46-76 224-254 (262)
300 PHA02650 hypothetical protein; 23.2 65 0.0014 15.5 1.2 11 65-75 19-29 (81)
301 PF14178 YppF: YppF-like prote 23.2 93 0.002 14.1 1.8 15 26-40 35-49 (60)
302 PF15601 Imm42: Immunity prote 23.0 1.4E+02 0.003 16.0 3.0 16 25-40 47-62 (134)
303 cd06403 PB1_Par6 The PB1 domai 22.9 44 0.00095 16.1 0.6 16 59-74 17-32 (80)
304 cd08785 CARD_CARD9-like Caspas 22.7 1.1E+02 0.0024 14.8 3.7 48 25-74 28-75 (86)
305 KOG1785|consensus 22.7 1.9E+02 0.004 18.8 3.4 41 25-65 188-228 (563)
306 cd07323 LAM LA motif RNA-bindi 22.7 1E+02 0.0022 14.4 3.3 33 23-55 28-60 (75)
307 PF10982 DUF2789: Protein of u 22.7 1.1E+02 0.0023 14.6 3.6 28 32-59 7-34 (74)
308 COG5083 SMP2 Uncharacterized p 22.6 1.1E+02 0.0024 20.1 2.4 37 23-59 381-418 (580)
309 PF03874 RNA_pol_Rpb4: RNA pol 22.5 1.2E+02 0.0026 15.1 2.5 27 28-56 71-97 (117)
310 PF08044 DUF1707: Domain of un 22.5 88 0.0019 13.6 2.9 30 24-53 20-49 (53)
311 PF13099 DUF3944: Domain of un 22.3 75 0.0016 12.7 2.0 19 45-63 14-32 (35)
312 KOG1774|consensus 22.0 22 0.00047 17.2 -0.5 20 55-74 34-54 (88)
313 PF06819 Arc_PepC: Archaeal Pe 21.8 1.3E+02 0.0027 15.5 2.2 18 1-18 83-100 (110)
314 PF10208 Armet: Degradation ar 21.8 1.6E+02 0.0034 16.2 2.7 31 10-40 109-139 (154)
315 PF09693 Phage_XkdX: Phage unc 21.5 81 0.0017 12.8 1.4 13 25-37 24-36 (40)
316 PF03250 Tropomodulin: Tropomo 21.3 1.3E+02 0.0027 16.4 2.2 21 4-24 23-43 (147)
317 COG2344 AT-rich DNA-binding pr 21.2 1.8E+02 0.004 16.8 4.4 48 5-57 7-57 (211)
318 KOG4064|consensus 21.2 1.6E+02 0.0035 16.2 2.6 25 11-41 19-43 (196)
319 PF13331 DUF4093: Domain of un 21.1 1.2E+02 0.0026 14.7 3.1 11 63-73 76-86 (87)
320 PF10256 Erf4: Golgin subfamil 21.1 99 0.0021 15.5 1.8 17 25-41 27-43 (118)
321 PF02459 Adeno_terminal: Adeno 21.0 2E+02 0.0044 19.2 3.4 45 15-59 459-503 (548)
322 PF13075 DUF3939: Protein of u 20.9 47 0.001 17.8 0.6 12 26-37 40-51 (140)
323 PRK11911 flgD flagellar basal 20.9 1.1E+02 0.0024 16.4 2.0 14 62-75 24-37 (140)
324 cd04411 Ribosomal_P1_P2_L12p R 20.9 1.4E+02 0.0029 15.1 6.9 41 28-73 17-57 (105)
325 PRK10356 hypothetical protein; 20.6 2.1E+02 0.0046 17.3 6.2 42 4-45 110-151 (274)
326 PF12588 PSDC: Phophatidylseri 20.5 1.6E+02 0.0035 15.8 3.8 9 65-73 44-52 (141)
327 PF12419 DUF3670: SNF2 Helicas 20.5 1.5E+02 0.0033 15.6 4.8 49 24-72 80-138 (141)
328 PF02093 Gag_p30: Gag P30 core 20.4 1.9E+02 0.0042 16.7 4.8 39 9-56 27-65 (211)
329 KOG0713|consensus 20.3 2.4E+02 0.0051 17.7 3.5 45 11-56 31-81 (336)
330 PF12703 plasmid_Toxin: Toxin 20.3 1.2E+02 0.0026 14.3 1.8 19 22-40 51-69 (74)
331 PF09476 Pilus_CpaD: Pilus bio 20.2 1.8E+02 0.004 16.4 3.0 27 3-29 52-78 (203)
No 1
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.69 E-value=4.9e-16 Score=71.56 Aligned_cols=62 Identities=42% Similarity=0.808 Sum_probs=54.5
Q ss_pred HHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHH----HHHHHHhcCCCCCcceeHHHHHHHH
Q psy10242 12 DFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAE----LEEMIREVDPEGKGIIDFPHFLELM 73 (77)
Q Consensus 12 ~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~f~~~~ 73 (77)
+++++|..+|.+++|+|+.+||..++..++...+... ++.++..+|.+++|.|+|+||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4789999999999999999999999999987665544 4556999999999999999999875
No 2
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.68 E-value=5.8e-16 Score=75.08 Aligned_cols=68 Identities=19% Similarity=0.331 Sum_probs=62.3
Q ss_pred HHHHHHHHHhhhhCC-CCCCceeHHHHHHHHHH-hCCCCCH-HHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 8 DQVNDFREAFSLFDK-DGSGTITAKHLGIVMRS-LGRNPSE-AELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 8 ~~~~~~~~~f~~~d~-~~~g~i~~~el~~~l~~-~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
..+..+..+|+.||. +++|+|+..+|+.++.. ++..++. .+++.++..+|.+++|+|+|++|+.++..
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 456789999999999 99999999999999999 8877777 89999999999999999999999998854
No 3
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.65 E-value=5.2e-15 Score=71.69 Aligned_cols=68 Identities=15% Similarity=0.422 Sum_probs=61.9
Q ss_pred HHHHHHHHHhhhhC-CCCCC-ceeHHHHHHHHHH-----hCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 8 DQVNDFREAFSLFD-KDGSG-TITAKHLGIVMRS-----LGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 8 ~~~~~~~~~f~~~d-~~~~g-~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
.-+..+.++|..+| .+++| +|+..+|+.+++. ++...+..+++.++..++.+++|+|+|++|+.++..
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 34678999999998 79999 6999999999999 788889999999999999999999999999988753
No 4
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.63 E-value=1.1e-14 Score=71.49 Aligned_cols=69 Identities=19% Similarity=0.316 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 4 FLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 4 ~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
.++++++..++.+|..+|.+++|.|+.++++.+++..+ ++..++..++..++.+.+|.|+|++|+.++.
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMH 71 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 46789999999999999999999999999999999864 6888999999999999999999999999874
No 5
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.63 E-value=8e-15 Score=71.04 Aligned_cols=69 Identities=14% Similarity=0.429 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhhhCC-CC-CCceeHHHHHHHHHH---hCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 7 EDQVNDFREAFSLFDK-DG-SGTITAKHLGIVMRS---LGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 7 ~~~~~~~~~~f~~~d~-~~-~g~i~~~el~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
++.+..+-.+|..|+. ++ +|+|+.+||+.++.. +|.+++.+++..++..+|.+++|+|+|++|+.++.+
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 4567789999999998 77 899999999999973 588899999999999999999999999999998764
No 6
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.62 E-value=1e-14 Score=76.94 Aligned_cols=73 Identities=48% Similarity=0.873 Sum_probs=68.9
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHhh
Q psy10242 3 SFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMKK 76 (77)
Q Consensus 3 ~~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~ 76 (77)
.+++.+++.+++++|..+|++++|.|+..+|..+++.+|.+++...+..++..++. +.+.|+|.+|+.++...
T Consensus 12 ~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~ 84 (160)
T COG5126 12 TQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVK 84 (160)
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999998 88999999999998654
No 7
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.61 E-value=9.7e-15 Score=77.03 Aligned_cols=67 Identities=40% Similarity=0.718 Sum_probs=63.5
Q ss_pred HHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 9 QVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 9 ~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
..+++..+|+.||.+++|+|+..++..++..+|..++.++++.++..++.+++|.|+|++|+..+..
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 4678999999999999999999999999999999999999999999999999999999999998753
No 8
>KOG0027|consensus
Probab=99.60 E-value=2.1e-14 Score=75.60 Aligned_cols=72 Identities=54% Similarity=0.986 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHhh
Q psy10242 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMKK 76 (77)
Q Consensus 5 ~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~ 76 (77)
++......++.+|..+|.+++|+|+..+|..+++.+|..++..++..++...+.+++|.|++++|+.++.+.
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~ 73 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKL 73 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhh
Confidence 467788999999999999999999999999999999999999999999999999999999999999998653
No 9
>KOG0027|consensus
Probab=99.59 E-value=2.1e-14 Score=75.59 Aligned_cols=67 Identities=45% Similarity=0.787 Sum_probs=63.5
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHhh
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMKK 76 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~ 76 (77)
...++++|+.+|++++|+|+..+|+.++..+|.+.+.+++..++..++.+++|.|+|.+|+..+...
T Consensus 84 ~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~~ 150 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSGK 150 (151)
T ss_pred HHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhcC
Confidence 4589999999999999999999999999999999999999999999999999999999999998653
No 10
>PTZ00184 calmodulin; Provisional
Probab=99.58 E-value=6.6e-14 Score=72.79 Aligned_cols=75 Identities=67% Similarity=1.099 Sum_probs=69.5
Q ss_pred CCCCCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 1 MDSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 1 m~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
|+.++++++...+...|..+|++++|.|+.++|..++..++..++...+..++..++.+++|.|+|++|+.++..
T Consensus 1 ~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 75 (149)
T PTZ00184 1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMAR 75 (149)
T ss_pred CCCccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHH
Confidence 567889999999999999999999999999999999999888888889999999999999999999999988753
No 11
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.56 E-value=7.5e-14 Score=68.28 Aligned_cols=69 Identities=14% Similarity=0.367 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhhhhC-CCCCC-ceeHHHHHHHHHHh-----CCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 7 EDQVNDFREAFSLFD-KDGSG-TITAKHLGIVMRSL-----GRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 7 ~~~~~~~~~~f~~~d-~~~~g-~i~~~el~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
+..+..+.++|..|| .+++| .|+..||+.+++.. +...+..++..++..+|.+++|.|+|++|+.++..
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 344678899999999 78998 59999999999762 33347789999999999999999999999998864
No 12
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.56 E-value=5.3e-14 Score=68.08 Aligned_cols=69 Identities=20% Similarity=0.438 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhhhhCC--CCCCceeHHHHHHHHHH-hCCC----CCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 7 EDQVNDFREAFSLFDK--DGSGTITAKHLGIVMRS-LGRN----PSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 7 ~~~~~~~~~~f~~~d~--~~~g~i~~~el~~~l~~-~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
++++..++.+|..+|. +++|.|+..++..+++. .+.+ .+..++..++..++.+++|.|+|++|+.++..
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 5678899999999999 89999999999999986 4543 35889999999999999999999999998764
No 13
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.55 E-value=1e-13 Score=67.92 Aligned_cols=68 Identities=19% Similarity=0.456 Sum_probs=60.0
Q ss_pred HHHHHHHHHhhhhCC-CC-CCceeHHHHHHHHHH-----hCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 8 DQVNDFREAFSLFDK-DG-SGTITAKHLGIVMRS-----LGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 8 ~~~~~~~~~f~~~d~-~~-~g~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
.....++.+|..+|. ++ +|+|+..+++.+++. ++..++..+++.++..++.+++|.|+|++|+.++..
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 346689999999997 87 699999999999986 456778899999999999999999999999988753
No 14
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.54 E-value=1.7e-13 Score=66.84 Aligned_cols=68 Identities=21% Similarity=0.494 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhhhC-CCCCC-ceeHHHHHHHHHH-hC----CCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 8 DQVNDFREAFSLFD-KDGSG-TITAKHLGIVMRS-LG----RNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 8 ~~~~~~~~~f~~~d-~~~~g-~i~~~el~~~l~~-~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
.-+..+.++|..+| .+++| .|+..+++.+++. ++ ..++..+++.++..++.+++|.|+|++|+.++..
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 34578999999997 99999 5999999999985 43 3467889999999999999999999999998864
No 15
>PTZ00183 centrin; Provisional
Probab=99.52 E-value=4.3e-13 Score=70.45 Aligned_cols=72 Identities=54% Similarity=0.886 Sum_probs=66.7
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 3 SFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 3 ~~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
..+++.+..++..+|..+|++++|.|+..+|..+++.++..++...+..++..++.+++|.|+|.+|+..+.
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~ 80 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMT 80 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 357788999999999999999999999999999999998888888999999999999999999999998764
No 16
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.51 E-value=1.4e-13 Score=63.27 Aligned_cols=59 Identities=22% Similarity=0.332 Sum_probs=54.2
Q ss_pred HHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 14 REAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 14 ~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
+++|..+|++++|.|+.+++..++...+ .+...++.++..++.+.+|.|+|.+|+.++.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 5789999999999999999999999876 4788899999999999999999999998874
No 17
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.49 E-value=5.3e-13 Score=59.19 Aligned_cols=52 Identities=33% Similarity=0.633 Sum_probs=48.7
Q ss_pred CCCceeHHHHHHHHHHhCCC-CCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 24 GSGTITAKHLGIVMRSLGRN-PSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 24 ~~g~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
.+|.|+.++|+.++..+|.. ++..+++.++..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 37999999999999888988 99999999999999999999999999999864
No 18
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.48 E-value=6.2e-13 Score=59.59 Aligned_cols=61 Identities=62% Similarity=0.996 Sum_probs=57.2
Q ss_pred HHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHH
Q psy10242 13 FREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELM 73 (77)
Q Consensus 13 ~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~ 73 (77)
+..+|..+|.+++|.|+..++..+++..+.+.+...+..++..++.+++|.|++.+|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999988999999999999999999999999999875
No 19
>PF14658 EF-hand_9: EF-hand domain
Probab=99.46 E-value=1.2e-12 Score=59.74 Aligned_cols=62 Identities=35% Similarity=0.719 Sum_probs=57.7
Q ss_pred HhhhhCCCCCCceeHHHHHHHHHHhCC-CCCHHHHHHHHHhcCCCCC-cceeHHHHHHHHHhhC
Q psy10242 16 AFSLFDKDGSGTITAKHLGIVMRSLGR-NPSEAELEEMIREVDPEGK-GIIDFPHFLELMMKKV 77 (77)
Q Consensus 16 ~f~~~d~~~~g~i~~~el~~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~~~~ 77 (77)
.|..+|+++.|.|...++...|+.++. .+...+++.+...+|+++. |.|+++.|+.+|+.+.
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~wi 66 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDWI 66 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHhC
Confidence 589999999999999999999999987 7889999999999999887 9999999999998763
No 20
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.46 E-value=2.1e-12 Score=62.73 Aligned_cols=69 Identities=22% Similarity=0.397 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhhh-hCCCCCC-ceeHHHHHHHHHHh-----CCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 7 EDQVNDFREAFSL-FDKDGSG-TITAKHLGIVMRSL-----GRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 7 ~~~~~~~~~~f~~-~d~~~~g-~i~~~el~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
+..+..+..+|.. .|.+++| .|+.+||+.++... +...++.++..++..+|.+++|.|+|++|+.++..
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 4457799999999 6788876 99999999999885 33556789999999999999999999999998754
No 21
>KOG0037|consensus
Probab=99.43 E-value=2.4e-12 Score=70.40 Aligned_cols=67 Identities=31% Similarity=0.524 Sum_probs=62.3
Q ss_pred HHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 9 QVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 9 ~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
.+..++.+|+.+|.|++|.|+..||+++|..+|..++++-.+.++..++...+|.|.|++|+.++..
T Consensus 122 ~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 122 YINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred HHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHH
Confidence 4668899999999999999999999999999999999999999999999887999999999998753
No 22
>PTZ00183 centrin; Provisional
Probab=99.40 E-value=4.4e-12 Score=66.61 Aligned_cols=65 Identities=40% Similarity=0.645 Sum_probs=60.9
Q ss_pred HHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 11 NDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
..+..+|..+|.+++|.|+..+|..++...+..++..++..++..++.+++|.|+|++|..++.+
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 46889999999999999999999999999888899999999999999999999999999999865
No 23
>PTZ00184 calmodulin; Provisional
Probab=99.39 E-value=6.8e-12 Score=65.19 Aligned_cols=66 Identities=42% Similarity=0.811 Sum_probs=60.8
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
...+..+|..+|.+++|+|+..++..++...+..++...+..++..++.+++|.|+|++|+.++..
T Consensus 83 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 83 EEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 356788999999999999999999999999988899999999999999999999999999998754
No 24
>KOG0041|consensus
Probab=99.36 E-value=4.9e-12 Score=68.68 Aligned_cols=72 Identities=31% Similarity=0.495 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 4 FLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 4 ~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
+++..+++.+...|..||.+.||+|+..||+..+..+|.+-++-.+.+++...+.|.+|+|+|-+|+-++..
T Consensus 92 eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 92 EFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 577889999999999999999999999999999999999999999999999999999999999999998865
No 25
>KOG0031|consensus
Probab=99.36 E-value=1.4e-11 Score=64.45 Aligned_cols=70 Identities=34% Similarity=0.661 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHhhC
Q psy10242 4 FLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMKKV 77 (77)
Q Consensus 4 ~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~~ 77 (77)
.+.+.++.+++++|..+|.|++|.|..++|+..+..+|...+.+++..++.+. .|.|+|.-|++++..+|
T Consensus 25 mf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL 94 (171)
T KOG0031|consen 25 MFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKL 94 (171)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHh
Confidence 46788999999999999999999999999999999999999999999999886 46799999999987654
No 26
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.35 E-value=1.2e-11 Score=62.67 Aligned_cols=64 Identities=14% Similarity=0.239 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 7 ~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
+.....+.-+|..+|.+++|+|+.+|+..+. ......-+..++..+|.+++|.|+++||..++.
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 4566788999999999999999999999876 234466788899999999999999999999884
No 27
>KOG0034|consensus
Probab=99.31 E-value=2.3e-11 Score=65.98 Aligned_cols=66 Identities=30% Similarity=0.620 Sum_probs=55.8
Q ss_pred HHHHHHhhhhCCCCCCceeHHHHHHHHHHh-CCCCC--HH----HHHHHHHhcCCCCCcceeHHHHHHHHHhh
Q psy10242 11 NDFREAFSLFDKDGSGTITAKHLGIVMRSL-GRNPS--EA----ELEEMIREVDPEGKGIIDFPHFLELMMKK 76 (77)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~el~~~l~~~-~~~~~--~~----~~~~~~~~~~~~~~~~i~~~~f~~~~~~~ 76 (77)
.+++-+|+.||.+++|+|+.+++.+++..+ +...+ .+ .++.++..+|.+++|+|+|+||.+++.+.
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 589999999999999999999999999986 33333 33 35668889999999999999999998654
No 28
>KOG0028|consensus
Probab=99.30 E-value=3.4e-11 Score=63.29 Aligned_cols=73 Identities=41% Similarity=0.691 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHhh
Q psy10242 4 FLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMKK 76 (77)
Q Consensus 4 ~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~ 76 (77)
.+.+++-..++..|..+|++++|+|+.++|+.+++..|..+...++..++..++.++.|.|+|++|...+..+
T Consensus 26 ~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k 98 (172)
T KOG0028|consen 26 ELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVK 98 (172)
T ss_pred cccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHH
Confidence 4556677899999999999999999999999999999999999999999999999999999999999987654
No 29
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=99.30 E-value=4.1e-11 Score=59.61 Aligned_cols=69 Identities=20% Similarity=0.343 Sum_probs=58.5
Q ss_pred CCCCCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHH
Q psy10242 1 MDSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELM 73 (77)
Q Consensus 1 m~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~ 73 (77)
|+ ++++++...+..+|..+++ ++|.|+..+.+.++...+ ++...+..+|...|.+.+|.++++||+-.+
T Consensus 1 ~~-~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm 69 (104)
T PF12763_consen 1 MP-KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAM 69 (104)
T ss_dssp -----SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHH
Confidence 44 6788899999999999986 589999999999998864 778999999999999999999999998765
No 30
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.30 E-value=4e-11 Score=58.11 Aligned_cols=68 Identities=16% Similarity=0.372 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhhhCCC--CCCceeHHHHHHHHH-HhCCCCC----HHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 8 DQVNDFREAFSLFDKD--GSGTITAKHLGIVMR-SLGRNPS----EAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 8 ~~~~~~~~~f~~~d~~--~~g~i~~~el~~~l~-~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
..+..+...|..|+.. ++|.|+.++|+.++. ..+..++ ..+++.++..+|.+++|.|+|++|+.++..
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 4466888899999865 479999999999997 4455555 899999999999999999999999998864
No 31
>KOG0031|consensus
Probab=99.29 E-value=4.9e-11 Score=62.40 Aligned_cols=65 Identities=29% Similarity=0.507 Sum_probs=62.2
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
.+.+..+|..+|+++.|.|..+.++.+|...|-+++.++++.+|..+..+..|.++|..|+.++.
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999986
No 32
>KOG0028|consensus
Probab=99.27 E-value=6.5e-11 Score=62.26 Aligned_cols=67 Identities=37% Similarity=0.674 Sum_probs=63.3
Q ss_pred HHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 9 QVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 9 ~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
..+.+..+|+.+|-+++|.|+..+|+.+.+.+|.+++.++++.++..++.+.+|-|+-++|..++.+
T Consensus 104 t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 4568899999999999999999999999999999999999999999999999999999999999864
No 33
>KOG0030|consensus
Probab=99.22 E-value=9.7e-11 Score=60.38 Aligned_cols=72 Identities=36% Similarity=0.693 Sum_probs=64.6
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC--CCcceeHHHHHHHHHh
Q psy10242 4 FLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPE--GKGIIDFPHFLELMMK 75 (77)
Q Consensus 4 ~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~f~~~~~~ 75 (77)
.+++++...++++|.-+|..++|+|+..+...+++.+|.+++..++.+....+..+ .-.+|+|++|+.+++.
T Consensus 4 ~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~ 77 (152)
T KOG0030|consen 4 AFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQ 77 (152)
T ss_pred ccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999988776 3568999999988753
No 34
>PLN02964 phosphatidylserine decarboxylase
Probab=99.09 E-value=1.7e-09 Score=67.55 Aligned_cols=69 Identities=17% Similarity=0.373 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 7 ~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
+++...+..+|..+|.+++|.|+.+||..++..++...+.+++..+|..+|.+++|.|++++|..++..
T Consensus 175 e~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 175 ETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 333345788888889999999999999998888777778888999999999999999999999888765
No 35
>KOG0036|consensus
Probab=99.05 E-value=3.7e-09 Score=62.77 Aligned_cols=72 Identities=17% Similarity=0.297 Sum_probs=63.5
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCC-CCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 4 FLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRN-PSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 4 ~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
...++...+++.+|..+|.+++|.++..++.+.+..+..+ ...+-...++...|.+.+|+++|.+|.+++..
T Consensus 7 ~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~ 79 (463)
T KOG0036|consen 7 ETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN 79 (463)
T ss_pred CCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH
Confidence 3456677799999999999999999999999999998777 55666777999999999999999999999864
No 36
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.05 E-value=7.7e-09 Score=50.22 Aligned_cols=67 Identities=15% Similarity=0.364 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhhhCCCCCCceeHHHHHHHHHH-----hCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 8 DQVNDFREAFSLFDKDGSGTITAKHLGIVMRS-----LGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 8 ~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
..+..+..+|..|-.+ .+.++..||+.++.. +...-++..++.++...|.|+||.|+|.||+.++..
T Consensus 5 ~ai~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 5 HSMEKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 3466788889998843 579999999999976 244457888999999999999999999999998754
No 37
>KOG0030|consensus
Probab=99.03 E-value=3e-09 Score=54.99 Aligned_cols=64 Identities=34% Similarity=0.663 Sum_probs=56.1
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
.+.+-+-.+.+|++++|.|+..+|+.+|-.+|.+++.+++..++.-. .+.+|.|+|+.|++-+.
T Consensus 87 ~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 87 YEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred HHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHHh
Confidence 44566677899999999999999999999999999999999988876 46689999999998763
No 38
>PLN02964 phosphatidylserine decarboxylase
Probab=99.00 E-value=4.5e-09 Score=65.73 Aligned_cols=68 Identities=24% Similarity=0.435 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhC-CCCCHHH---HHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 4 FLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLG-RNPSEAE---LEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 4 ~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~-~~~~~~~---~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
.+...++.+++++|..+|++++|.+ +..+++.+| ..++..+ ++.++..+|.+++|.|+|++|+.++..
T Consensus 136 ~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~ 207 (644)
T PLN02964 136 DFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKA 207 (644)
T ss_pred hccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH
Confidence 4667788999999999999999997 888999988 4677766 789999999999999999999988753
No 39
>KOG0044|consensus
Probab=99.00 E-value=2.1e-09 Score=58.59 Aligned_cols=66 Identities=24% Similarity=0.295 Sum_probs=54.3
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
..-...+|+.+|.+++|.|+..||..++..+...-..+.++..|..||.+++|.|+++++++++..
T Consensus 63 ~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~ 128 (193)
T KOG0044|consen 63 SKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQA 128 (193)
T ss_pred HHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHH
Confidence 445667788899999999999998888888766666777788899999999999999999888753
No 40
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.98 E-value=1.9e-09 Score=42.03 Aligned_cols=27 Identities=41% Similarity=0.720 Sum_probs=20.0
Q ss_pred HHHHhhhhCCCCCCceeHHHHHHHHHH
Q psy10242 13 FREAFSLFDKDGSGTITAKHLGIVMRS 39 (77)
Q Consensus 13 ~~~~f~~~d~~~~g~i~~~el~~~l~~ 39 (77)
++++|+.+|+|++|+|+.+||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 566777777777777777777777664
No 41
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.94 E-value=2.7e-09 Score=42.15 Aligned_cols=30 Identities=53% Similarity=0.914 Sum_probs=25.6
Q ss_pred HHHHHhhhhCCCCCCceeHHHHHHHHH-HhC
Q psy10242 12 DFREAFSLFDKDGSGTITAKHLGIVMR-SLG 41 (77)
Q Consensus 12 ~~~~~f~~~d~~~~g~i~~~el~~~l~-~~~ 41 (77)
+++.+|..+|.+++|+|+.+||+.+++ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478899999999999999999999998 454
No 42
>KOG0037|consensus
Probab=98.91 E-value=1.2e-08 Score=56.17 Aligned_cols=65 Identities=28% Similarity=0.280 Sum_probs=59.1
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHHh-CCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSL-GRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
...+..+|...|.++.|.|+.+|++.+|... ..+++.+.++.++..+|.+.+|+|+++||..++.
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~ 121 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWK 121 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Confidence 3478899999999999999999999999954 4678999999999999999999999999999875
No 43
>KOG0036|consensus
Probab=98.86 E-value=2.3e-08 Score=59.50 Aligned_cols=68 Identities=18% Similarity=0.396 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 7 ~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
.....++..+|..+|.+.+|.|...|+.+.++.+|..++.+.++.+++..+.++++.|++++|...+.
T Consensus 78 ~~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 78 DNKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLL 145 (463)
T ss_pred HHhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhh
Confidence 34567899999999999999999999999999999999999999999999999999999999987653
No 44
>KOG0046|consensus
Probab=98.83 E-value=4.8e-08 Score=59.70 Aligned_cols=72 Identities=24% Similarity=0.474 Sum_probs=64.3
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCC---CHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 3 SFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNP---SEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 3 ~~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
.++++++...+...|...| +++|+++..++..++...+.+. ..++++.++...+.+.+|+|+|++|+.++.+
T Consensus 11 ~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 11 SQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred ccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 4788999999999999999 9999999999999999876543 5788999999999999999999999997643
No 45
>KOG0040|consensus
Probab=98.81 E-value=3.6e-08 Score=66.09 Aligned_cols=73 Identities=33% Similarity=0.642 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCC-------HHHHHHHHHhcCCCCCcceeHHHHHHHHHhh
Q psy10242 4 FLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPS-------EAELEEMIREVDPEGKGIIDFPHFLELMMKK 76 (77)
Q Consensus 4 ~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~ 76 (77)
+++++.+.++.-+|.+||.+++|.++..+|..+|+..|+.++ ...+..++...|++.+|.|+..+|+.+|..+
T Consensus 2246 GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2246 GVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred CCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc
Confidence 678899999999999999999999999999999999987763 2368899999999999999999999998653
No 46
>KOG0377|consensus
Probab=98.81 E-value=4.8e-08 Score=58.94 Aligned_cols=63 Identities=29% Similarity=0.470 Sum_probs=56.1
Q ss_pred HHHHHhhhhCCCCCCceeHHHHHHHHHHh----CCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 12 DFREAFSLFDKDGSGTITAKHLGIVMRSL----GRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 12 ~~~~~f~~~d~~~~g~i~~~el~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
.+.-+|+.+|.+++|.|+.+||+.+.+.+ ..+++...+.++....|-|++|+|+++||+..+.
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 56778999999999999999999988875 3457889999999999999999999999998864
No 47
>KOG0044|consensus
Probab=98.78 E-value=4.6e-08 Score=53.44 Aligned_cols=62 Identities=24% Similarity=0.516 Sum_probs=50.0
Q ss_pred HHHHhhhhCCCCCCceeHHHHHHHHHHh----CC-------CCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 13 FREAFSLFDKDGSGTITAKHLGIVMRSL----GR-------NPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 13 ~~~~f~~~d~~~~g~i~~~el~~~l~~~----~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
+.=.|+.||.+++|+|+..++-.+++.+ +. ....+-+..+|..+|.|++|.|++++|.....
T Consensus 102 l~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 102 LKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred hhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 3344999999999999999998888874 21 11345578899999999999999999998754
No 48
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.76 E-value=2.9e-08 Score=38.65 Aligned_cols=28 Identities=54% Similarity=0.863 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 48 ELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 48 ~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
+++.+|..+|.|++|.|+++||..++.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4678999999999999999999999864
No 49
>KOG0038|consensus
Probab=98.67 E-value=1.2e-07 Score=49.66 Aligned_cols=64 Identities=30% Similarity=0.536 Sum_probs=53.8
Q ss_pred HHHHHhhhhCCCCCCceeHHHHHHHHHHhC-CCCCHHHHH----HHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 12 DFREAFSLFDKDGSGTITAKHLGIVMRSLG-RNPSEAELE----EMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 12 ~~~~~f~~~d~~~~g~i~~~el~~~l~~~~-~~~~~~~~~----~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
...=+|+.||-+++++|...++.+.+..+. ..++.+++. .+++++|.+++|++++.+|-+.+.+
T Consensus 109 K~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 109 KAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred hhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 445568999999999999999999999873 457877764 4677899999999999999998765
No 50
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.63 E-value=1.8e-07 Score=56.00 Aligned_cols=53 Identities=23% Similarity=0.260 Sum_probs=46.5
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
...+..+|..+|.+++|.|+.+||.. +..+|..+|.+++|.|++++|...+..
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 45778899999999999999999841 467899999999999999999998754
No 51
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.62 E-value=9.5e-08 Score=35.92 Aligned_cols=24 Identities=33% Similarity=0.707 Sum_probs=19.0
Q ss_pred HHHHhhhhCCCCCCceeHHHHHHH
Q psy10242 13 FREAFSLFDKDGSGTITAKHLGIV 36 (77)
Q Consensus 13 ~~~~f~~~d~~~~g~i~~~el~~~ 36 (77)
++++|..+|.|++|.|+.+|+..+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 456788888888888888888764
No 52
>KOG0034|consensus
Probab=98.57 E-value=5.6e-07 Score=49.11 Aligned_cols=66 Identities=21% Similarity=0.452 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHhhhhCCC-CCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcc-eeHHHHHHHH
Q psy10242 4 FLTEDQVNDFREAFSLFDKD-GSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGI-IDFPHFLELM 73 (77)
Q Consensus 4 ~~~~~~~~~~~~~f~~~d~~-~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~ 73 (77)
.++..++.++...|..++++ ++|.++.++|..+......+ -...++..++.+.+|. |+|++|++.+
T Consensus 26 ~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~Np----~~~rI~~~f~~~~~~~~v~F~~Fv~~l 93 (187)
T KOG0034|consen 26 QFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELALNP----LADRIIDRFDTDGNGDPVDFEEFVRLL 93 (187)
T ss_pred ccCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcCc----HHHHHHHHHhccCCCCccCHHHHHHHH
Confidence 47888999999999999999 88999999998888432211 2233444554444444 5555555554
No 53
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.52 E-value=1.5e-06 Score=37.81 Aligned_cols=49 Identities=12% Similarity=0.261 Sum_probs=40.2
Q ss_pred ceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 27 TITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 27 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
+++..|++.+|+.++..++..-+..+|...|.+++|.+.-+||..++..
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 3688999999999999999999999999999999999999999998764
No 54
>KOG4223|consensus
Probab=98.46 E-value=4.9e-07 Score=52.46 Aligned_cols=66 Identities=17% Similarity=0.217 Sum_probs=58.7
Q ss_pred HHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 9 QVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 9 ~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
...++..++..+|.+++|+|+..+++.++.....+....++..-|..++.+++|.|+|+++...+.
T Consensus 75 ~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~ 140 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTY 140 (325)
T ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhh
Confidence 466999999999999999999999999999876666777788889999999999999999987654
No 55
>KOG4223|consensus
Probab=98.36 E-value=5.4e-07 Score=52.28 Aligned_cols=58 Identities=21% Similarity=0.328 Sum_probs=52.3
Q ss_pred HHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHH
Q psy10242 14 REAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLE 71 (77)
Q Consensus 14 ~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~ 71 (77)
...+..+|+|++|+++..|++.++.-.+......+++.++...|.|++|+|+++|-+.
T Consensus 244 e~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 244 EQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred HHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 3556788999999999999999998888888889999999999999999999998765
No 56
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.24 E-value=5.5e-07 Score=45.54 Aligned_cols=62 Identities=19% Similarity=0.280 Sum_probs=43.6
Q ss_pred HHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHH
Q psy10242 9 QVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLEL 72 (77)
Q Consensus 9 ~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~ 72 (77)
....+.=.|..+|.+++|.++..|+..+...+ .....=++.++...|.++++.|+..|+..+
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 44566667999999999999999988765544 234445778999999999999999999764
No 57
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.16 E-value=6.4e-06 Score=30.84 Aligned_cols=25 Identities=32% Similarity=0.712 Sum_probs=21.8
Q ss_pred HHHHHHhcCCCCCcceeHHHHHHHH
Q psy10242 49 LEEMIREVDPEGKGIIDFPHFLELM 73 (77)
Q Consensus 49 ~~~~~~~~~~~~~~~i~~~~f~~~~ 73 (77)
++..|..+|.|++|.|+++||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 3568999999999999999998753
No 58
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.07 E-value=1.3e-05 Score=31.35 Aligned_cols=27 Identities=30% Similarity=0.621 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 48 ELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 48 ~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
+++.+|..+|.+++|.|+++||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 367899999999999999999999986
No 59
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.97 E-value=1.6e-05 Score=29.53 Aligned_cols=27 Identities=41% Similarity=0.786 Sum_probs=18.0
Q ss_pred HHHHhhhhCCCCCCceeHHHHHHHHHH
Q psy10242 13 FREAFSLFDKDGSGTITAKHLGIVMRS 39 (77)
Q Consensus 13 ~~~~f~~~d~~~~g~i~~~el~~~l~~ 39 (77)
++.+|..+|.+++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 455667777777777777777666653
No 60
>KOG4251|consensus
Probab=97.93 E-value=1.1e-05 Score=45.81 Aligned_cols=63 Identities=21% Similarity=0.291 Sum_probs=48.8
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHHh-CCCC--CHHHHHHHHHhcCCCCCcceeHHHHHHH
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSL-GRNP--SEAELEEMIREVDPEGKGIIDFPHFLEL 72 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~i~~~~f~~~ 72 (77)
...+..+|..-|.+.+|+|+..++++++..- ...+ +.++-.-.|...|.+++|.|+|++|.--
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvk 165 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVK 165 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhH
Confidence 4578899999999999999999999998762 1111 2233444677889999999999998643
No 61
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.93 E-value=6.7e-05 Score=35.75 Aligned_cols=63 Identities=17% Similarity=0.415 Sum_probs=50.9
Q ss_pred HHHHHhhhhCCCCCCceeHHHHHHHHHHhC-C-CCCHHHHHHHHHhcCCC----CCcceeHHHHHHHHHh
Q psy10242 12 DFREAFSLFDKDGSGTITAKHLGIVMRSLG-R-NPSEAELEEMIREVDPE----GKGIIDFPHFLELMMK 75 (77)
Q Consensus 12 ~~~~~f~~~d~~~~g~i~~~el~~~l~~~~-~-~~~~~~~~~~~~~~~~~----~~~~i~~~~f~~~~~~ 75 (77)
.+..+|..+-. +.+.++.++|...|..-. . ..+...+..++..+..+ ..+.+++++|..+|..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 36788999855 789999999999998763 2 46889999999998654 3688999999999853
No 62
>KOG1955|consensus
Probab=97.83 E-value=0.00014 Score=45.15 Aligned_cols=68 Identities=16% Similarity=0.229 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHH
Q psy10242 4 FLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELM 73 (77)
Q Consensus 4 ~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~ 73 (77)
++++++.+.+-..|+.+.+|-+|+|+..--+.++.. .+++-.++..+|+..|.+.||.++..||+..+
T Consensus 224 ~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtK--Sklpi~ELshIWeLsD~d~DGALtL~EFcAAf 291 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTK--SKLPIEELSHIWELSDVDRDGALTLSEFCAAF 291 (737)
T ss_pred ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhh--ccCchHHHHHHHhhcccCccccccHHHHHhhH
Confidence 467888888999999999999999998877777776 45677899999999999999999999999876
No 63
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.79 E-value=9.3e-05 Score=32.34 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=25.0
Q ss_pred HHHHHhhhhCCCCCCceeHHHHHHHHHH
Q psy10242 12 DFREAFSLFDKDGSGTITAKHLGIVMRS 39 (77)
Q Consensus 12 ~~~~~f~~~d~~~~g~i~~~el~~~l~~ 39 (77)
.+..+|..+|.+++|.|+.+||..++..
T Consensus 26 e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 26 EVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 4788899999999999999999988764
No 64
>KOG1029|consensus
Probab=97.70 E-value=0.0001 Score=47.66 Aligned_cols=63 Identities=21% Similarity=0.370 Sum_probs=55.5
Q ss_pred HHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHH
Q psy10242 9 QVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELM 73 (77)
Q Consensus 9 ~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~ 73 (77)
.-..++.+|..+|+...|+++...-+.+|...+ ++...+..+|...|.|+||+++-++|+-.+
T Consensus 193 ~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 193 NKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAM 255 (1118)
T ss_pred hhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHH
Confidence 345788999999999999999999999988755 677888999999999999999999998654
No 65
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.67 E-value=0.00018 Score=32.57 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=24.4
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHH
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVM 37 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l 37 (77)
...+..+|..+|++++|.|+.+||..++
T Consensus 39 ~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 39 DEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4477888999999999999999998764
No 66
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.61 E-value=0.00014 Score=26.77 Aligned_cols=27 Identities=41% Similarity=0.712 Sum_probs=23.6
Q ss_pred HHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 49 LEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 49 ~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
++.++..++.+.+|.|++.+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567889999999999999999998864
No 67
>KOG0042|consensus
Probab=97.47 E-value=0.00059 Score=42.99 Aligned_cols=71 Identities=24% Similarity=0.331 Sum_probs=64.8
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 4 FLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 4 ~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
.+++++....+..|..+|.++.|+++..++..+++..+...+.+...++....+.+..|.+...+|..++.
T Consensus 586 ~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s 656 (680)
T KOG0042|consen 586 KLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMS 656 (680)
T ss_pred ccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHH
Confidence 46788889999999999999999999999999999988788999999999999988899999999988864
No 68
>KOG4065|consensus
Probab=97.44 E-value=0.00097 Score=33.97 Aligned_cols=58 Identities=33% Similarity=0.492 Sum_probs=43.5
Q ss_pred HHhhhhCCCCCCceeHHHHHHHHHHh------CC---CC-CHHHHHHH----HHhcCCCCCcceeHHHHHHH
Q psy10242 15 EAFSLFDKDGSGTITAKHLGIVMRSL------GR---NP-SEAELEEM----IREVDPEGKGIIDFPHFLEL 72 (77)
Q Consensus 15 ~~f~~~d~~~~g~i~~~el~~~l~~~------~~---~~-~~~~~~~~----~~~~~~~~~~~i~~~~f~~~ 72 (77)
..|...|.+++|.++.-|+..++... |. ++ +..++..+ +..-|.|++|.|+|.+|+..
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 45888999999999999999998653 22 22 44455444 44557789999999999864
No 69
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=97.31 E-value=0.0068 Score=32.32 Aligned_cols=64 Identities=20% Similarity=0.436 Sum_probs=47.8
Q ss_pred HHHHHhhhhCCCCCCceeHHHHHHHHHHhC---CCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 12 DFREAFSLFDKDGSGTITAKHLGIVMRSLG---RNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 12 ~~~~~f~~~d~~~~g~i~~~el~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
.+...|..+...+...++...|..+++..+ ..++...+..+|..+-.....+|+|++|...|..
T Consensus 3 ~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 3 AVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 344445555666667899999999999864 4578899999999987666678999999998753
No 70
>KOG2643|consensus
Probab=97.30 E-value=0.00012 Score=44.55 Aligned_cols=53 Identities=17% Similarity=0.355 Sum_probs=39.9
Q ss_pred CCceeHHHHHHHHHHh-CCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHhhC
Q psy10242 25 SGTITAKHLGIVMRSL-GRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMKKV 77 (77)
Q Consensus 25 ~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~~ 77 (77)
.+.|+..+|+.+.... |.+++...+.-+|..||.|.||.|+.+||+.++.++|
T Consensus 402 g~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~Rm 455 (489)
T KOG2643|consen 402 GASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRRM 455 (489)
T ss_pred CCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHHh
Confidence 3456666666666553 5666666666678889999999999999999998764
No 71
>KOG0377|consensus
Probab=97.28 E-value=0.0043 Score=38.40 Aligned_cols=65 Identities=23% Similarity=0.417 Sum_probs=48.6
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHHh-CCCCCH------------------------------------------
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSL-GRNPSE------------------------------------------ 46 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~-~~~~~~------------------------------------------ 46 (77)
...+...|+.+|+.+.|+|+......+++.+ +.+++=
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetL 542 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETL 542 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHH
Confidence 3467888999999999999999998888764 222210
Q ss_pred ----HHHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 47 ----AELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 47 ----~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
..++.+|...|.+..|.|+.+||...+.
T Consensus 543 Yr~ks~LetiF~~iD~D~SG~isldEF~~a~~ 574 (631)
T KOG0377|consen 543 YRNKSSLETIFNIIDADNSGEISLDEFRTAWK 574 (631)
T ss_pred HhchhhHHHHHHHhccCCCCceeHHHHHHHHH
Confidence 0033467778999999999999988763
No 72
>KOG2243|consensus
Probab=97.27 E-value=0.00081 Score=46.68 Aligned_cols=57 Identities=19% Similarity=0.496 Sum_probs=49.7
Q ss_pred HhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHH
Q psy10242 16 AFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELM 73 (77)
Q Consensus 16 ~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~ 73 (77)
.|+.||+++.|.|+..+|..++... ...+..+++.++.-+..+.+...+|++|+.-+
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 4778899999999999999999874 34688889999999999999999999998754
No 73
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.13 E-value=0.002 Score=28.12 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=24.6
Q ss_pred HHHHHHhhhhCCCCCCceeHHHHHHHHHHh
Q psy10242 11 NDFREAFSLFDKDGSGTITAKHLGIVMRSL 40 (77)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~el~~~l~~~ 40 (77)
.....+|+.+|++++|.+..+|+...++.+
T Consensus 21 ~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 21 EYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 355668999999999999999999888754
No 74
>KOG2643|consensus
Probab=97.12 E-value=0.00081 Score=41.10 Aligned_cols=64 Identities=27% Similarity=0.506 Sum_probs=43.2
Q ss_pred HHHHHhhhhCCCCCCceeHHHHHHHHHHh------CCC----CC-----HHHHHH--HHHhcCCCCCcceeHHHHHHHHH
Q psy10242 12 DFREAFSLFDKDGSGTITAKHLGIVMRSL------GRN----PS-----EAELEE--MIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 12 ~~~~~f~~~d~~~~g~i~~~el~~~l~~~------~~~----~~-----~~~~~~--~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
.+.-+|+.+|.|++|-|+.+||..+..-+ +.. ++ ...++. ..--|..+.++++++++|+.++.
T Consensus 234 ~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e 313 (489)
T KOG2643|consen 234 NFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQE 313 (489)
T ss_pred cceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHH
Confidence 34457999999999999999988776432 110 00 112222 23346788899999999998875
Q ss_pred h
Q psy10242 75 K 75 (77)
Q Consensus 75 ~ 75 (77)
+
T Consensus 314 ~ 314 (489)
T KOG2643|consen 314 N 314 (489)
T ss_pred H
Confidence 4
No 75
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=97.05 E-value=0.0015 Score=31.77 Aligned_cols=30 Identities=10% Similarity=0.212 Sum_probs=27.3
Q ss_pred HHHHHHhhhhCCCCCCceeHHHHHHHHHHh
Q psy10242 11 NDFREAFSLFDKDGSGTITAKHLGIVMRSL 40 (77)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~el~~~l~~~ 40 (77)
..+..+++.+|.+++|.|+.+||..++..+
T Consensus 47 ~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 47 EGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 578889999999999999999999988775
No 76
>KOG2562|consensus
Probab=96.90 E-value=0.005 Score=38.03 Aligned_cols=66 Identities=15% Similarity=0.275 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHh----cCCCCCcceeHHHHHHHHH
Q psy10242 6 TEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIRE----VDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 6 ~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~f~~~~~ 74 (77)
+-++--.+.-.|-.+|++.+|.|+.+++...-.. .++..-++.+|.. .-...+|+++|++|+-++.
T Consensus 273 S~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~---tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~Fil 342 (493)
T KOG2562|consen 273 SYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDH---TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFIL 342 (493)
T ss_pred eHHHHHHHHHHHhhhccccccccCHHHHHHHhcc---chhhHHHHHHHhhccccceeeecCcccHHHHHHHHH
Confidence 3444445555577889999999999997764433 3567778888883 3345688999999998764
No 77
>KOG4666|consensus
Probab=96.81 E-value=0.0035 Score=37.31 Aligned_cols=63 Identities=11% Similarity=0.163 Sum_probs=37.9
Q ss_pred HHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 11 NDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
..++-.|++++.+-||.++..+|..+++.. .+...-.+--+|...+...+++|.|++|..+..
T Consensus 296 ~iiq~afk~f~v~eDg~~ge~~ls~ilq~~-lgv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 296 VIIQYAFKRFSVAEDGISGEHILSLILQVV-LGVEVLRVPVLFPSIEQKDDPKIYASNFRKFAA 358 (412)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHh-cCcceeeccccchhhhcccCcceeHHHHHHHHH
Confidence 345556677777777777776666666653 223333344456666666677777777776653
No 78
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=96.77 E-value=0.0037 Score=30.48 Aligned_cols=31 Identities=6% Similarity=0.122 Sum_probs=27.2
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHHh
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSL 40 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~ 40 (77)
...+.+++..+|.+++|.|+..||..++..+
T Consensus 52 ~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 52 PMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 3478888999999999999999999988765
No 79
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=96.74 E-value=0.0029 Score=32.21 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=24.3
Q ss_pred HHHHHHhhhhCCCCCCceeHHHHHHHHH
Q psy10242 11 NDFREAFSLFDKDGSGTITAKHLGIVMR 38 (77)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~el~~~l~ 38 (77)
..+..+|..+|.+++|.|+.+|+..++.
T Consensus 80 ~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 80 HCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 3456789999999999999999999983
No 80
>KOG0169|consensus
Probab=96.73 E-value=0.0072 Score=39.27 Aligned_cols=68 Identities=16% Similarity=0.267 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 7 ~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
......+..+|...|++++|.++..+...++..+...++...+..++.+.+...++++...+|..+..
T Consensus 132 ~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~ 199 (746)
T KOG0169|consen 132 SRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRK 199 (746)
T ss_pred chHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHH
Confidence 44556788889999999999999999999999988888888888899988888899999988887754
No 81
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=96.64 E-value=0.0052 Score=29.81 Aligned_cols=31 Identities=10% Similarity=0.173 Sum_probs=26.8
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHHh
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSL 40 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~ 40 (77)
...+.+++..+|.+++|.|+.+||..++..+
T Consensus 51 ~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 51 PGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3567788999999999999999999888765
No 82
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.59 E-value=0.0038 Score=30.51 Aligned_cols=32 Identities=9% Similarity=0.094 Sum_probs=28.1
Q ss_pred HHHHHHHHhhhhCCCCCCceeHHHHHHHHHHh
Q psy10242 9 QVNDFREAFSLFDKDGSGTITAKHLGIVMRSL 40 (77)
Q Consensus 9 ~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~ 40 (77)
....+.+++..+|.+++|.|+..||..++..+
T Consensus 46 d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 46 DPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 35578889999999999999999999988765
No 83
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=96.50 E-value=0.0074 Score=29.12 Aligned_cols=31 Identities=10% Similarity=0.277 Sum_probs=27.0
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHHh
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSL 40 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~ 40 (77)
...+..+|..+|.+++|.|+.++|..++..+
T Consensus 50 ~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 50 QKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4578888999999999999999999888764
No 84
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=96.44 E-value=0.0088 Score=28.95 Aligned_cols=30 Identities=7% Similarity=0.189 Sum_probs=25.4
Q ss_pred HHHHHHhhhhCCCCCCceeHHHHHHHHHHh
Q psy10242 11 NDFREAFSLFDKDGSGTITAKHLGIVMRSL 40 (77)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~el~~~l~~~ 40 (77)
..+.++++.+|.+++|.|+..+|..++..+
T Consensus 51 ~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 51 AEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 466777889999999999999998887764
No 85
>KOG1029|consensus
Probab=96.43 E-value=0.034 Score=36.85 Aligned_cols=66 Identities=18% Similarity=0.256 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHH
Q psy10242 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELM 73 (77)
Q Consensus 5 ~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~ 73 (77)
+++++.......|..+-+. .|+|+...-+.++-..+ ++...+.++|...|.|+||+++..+|.-.+
T Consensus 10 vT~~Er~K~~~qF~~Lkp~-~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~EfSIAm 75 (1118)
T KOG1029|consen 10 VTDEERQKHDAQFGQLKPG-QGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREFSIAM 75 (1118)
T ss_pred cchHHHHHHHHHHhccCCC-CCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHHHHHH
Confidence 3456666666777777664 79999999999888765 566788999999999999999999998665
No 86
>KOG2562|consensus
Probab=96.42 E-value=0.014 Score=36.15 Aligned_cols=61 Identities=23% Similarity=0.324 Sum_probs=47.2
Q ss_pred HHHHHHhhhhCCCCCCceeHHHHHHHHHHh-------C-CCCC-HHHHHHHHHhcCCCCCcceeHHHHHH
Q psy10242 11 NDFREAFSLFDKDGSGTITAKHLGIVMRSL-------G-RNPS-EAELEEMIREVDPEGKGIIDFPHFLE 71 (77)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~el~~~l~~~-------~-~~~~-~~~~~~~~~~~~~~~~~~i~~~~f~~ 71 (77)
..+.=+|+.+|.+++|.++..+++...+.. + ..++ ...+.+++....+...++|+..+|..
T Consensus 351 ~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 351 ASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred cchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 345668999999999999999988887653 2 2222 44567788888888889999999876
No 87
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=96.31 E-value=0.011 Score=28.61 Aligned_cols=31 Identities=13% Similarity=0.401 Sum_probs=26.5
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHHh
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSL 40 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~ 40 (77)
...+..++..+|++++|.|+.++|..++..+
T Consensus 51 ~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 51 ADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 3467788899999999999999999888764
No 88
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=96.23 E-value=0.014 Score=26.10 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=25.2
Q ss_pred HHHHHHhhhhCCCCCCceeHHHHHHHHHHh
Q psy10242 11 NDFREAFSLFDKDGSGTITAKHLGIVMRSL 40 (77)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~el~~~l~~~ 40 (77)
..+..+|..+|.+++|.|+.++|..++..+
T Consensus 33 ~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 33 SVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred HHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 356778899999999999999998887654
No 89
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=96.21 E-value=0.015 Score=25.03 Aligned_cols=27 Identities=30% Similarity=0.446 Sum_probs=22.5
Q ss_pred HHHHHHhhhhCCCCCCceeHHHHHHHH
Q psy10242 11 NDFREAFSLFDKDGSGTITAKHLGIVM 37 (77)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~el~~~l 37 (77)
..+..+|..+|.+++|.|+..+|..++
T Consensus 36 ~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 36 EEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 456678899999999999999987754
No 90
>KOG0035|consensus
Probab=96.21 E-value=0.041 Score=36.74 Aligned_cols=72 Identities=21% Similarity=0.283 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCH-----HHHHHHHHhcCCCCCcceeHHHHHHHHHhh
Q psy10242 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSE-----AELEEMIREVDPEGKGIIDFPHFLELMMKK 76 (77)
Q Consensus 5 ~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~ 76 (77)
.++.....++..|..++....|.++.+++..++..+|..... .++..++..-+.+.-|.++|.+|...+.+.
T Consensus 741 ~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 741 TSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred hhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 456678899999999999999999999999999999877653 234445555566666899999999988653
No 91
>KOG4251|consensus
Probab=96.17 E-value=0.021 Score=33.00 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=48.2
Q ss_pred HHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHH
Q psy10242 12 DFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLE 71 (77)
Q Consensus 12 ~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~ 71 (77)
+.++.=..+|.+.+|.++.+++.....-......-.++..++...+.+.+.+++.++.+.
T Consensus 282 RkkEFeElIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 282 RKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLE 341 (362)
T ss_pred HHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHH
Confidence 333333468999999999999998876666667777888899999999999999988764
No 92
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.16 E-value=0.011 Score=28.73 Aligned_cols=32 Identities=9% Similarity=0.185 Sum_probs=26.9
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHHhC
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSLG 41 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~ 41 (77)
...+..++..+|.+++|.|+.++|..++...+
T Consensus 50 ~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 50 PMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 34677888899999999999999998887653
No 93
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=96.07 E-value=0.01 Score=27.57 Aligned_cols=55 Identities=22% Similarity=0.338 Sum_probs=36.1
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-------CCCcceeHHHHHHH
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDP-------EGKGIIDFPHFLEL 72 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~f~~~ 72 (77)
.+.+...|+.+ .++.++|+.++|+..|-. +.++-+...+.. ...|.++|..|+..
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l~p-------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSLTP-------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS-C-------CCHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHcCc-------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 35678889999 778899999999986532 223344443322 12367899998753
No 94
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=96.04 E-value=0.019 Score=27.78 Aligned_cols=31 Identities=13% Similarity=0.227 Sum_probs=26.1
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHHh
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSL 40 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~ 40 (77)
...+..+++.+|++++|.|+..+|..++...
T Consensus 50 ~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 50 QEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3457788889999999999999998887754
No 95
>KOG4578|consensus
Probab=95.96 E-value=0.01 Score=35.43 Aligned_cols=61 Identities=11% Similarity=0.109 Sum_probs=45.9
Q ss_pred HHHHHhhhhCCCCCCceeHHHH---HHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 12 DFREAFSLFDKDGSGTITAKHL---GIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 12 ~~~~~f~~~d~~~~g~i~~~el---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
.+.-.|..+|.|.++.|...|. +.++..- .....=.+.++..-|.|+|.+|++.|+..++.
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~--s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKK--SKPRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhh--ccHHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 3444589999999999999884 4444432 22334457788889999999999999998874
No 96
>PF14658 EF-hand_9: EF-hand domain
Probab=95.96 E-value=0.022 Score=26.24 Aligned_cols=30 Identities=17% Similarity=0.445 Sum_probs=26.4
Q ss_pred HHHHHHHhhhhCCCCC-CceeHHHHHHHHHH
Q psy10242 10 VNDFREAFSLFDKDGS-GTITAKHLGIVMRS 39 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~-g~i~~~el~~~l~~ 39 (77)
..+++.+...+||++. |.|+.+.|..+++.
T Consensus 34 e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 34 ESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred HHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3488889999999998 99999999998875
No 97
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=95.92 E-value=0.026 Score=27.50 Aligned_cols=30 Identities=17% Similarity=0.373 Sum_probs=25.4
Q ss_pred HHHHHHhhhhCCCCCCceeHHHHHHHHHHh
Q psy10242 11 NDFREAFSLFDKDGSGTITAKHLGIVMRSL 40 (77)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~el~~~l~~~ 40 (77)
..+.+++..+|.+++|.|+.++|..++...
T Consensus 44 ~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 44 TLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 356778888999999999999999888763
No 98
>KOG4666|consensus
Probab=95.90 E-value=0.046 Score=32.78 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=55.7
Q ss_pred HHHHHHHHhhhhCCCCCCceeHHHHHHHHHHh-CCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 9 QVNDFREAFSLFDKDGSGTITAKHLGIVMRSL-GRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 9 ~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
..+.+...|..+|.+++|.++..+.-..+..+ +.+.+...++-.|+.|+.+.||.+.-.+|..+++-
T Consensus 257 vsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~ 324 (412)
T KOG4666|consen 257 VSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQV 324 (412)
T ss_pred hhhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHH
Confidence 34678889999999999999988877777765 44567788899999999999999988888888754
No 99
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=95.83 E-value=0.032 Score=27.93 Aligned_cols=30 Identities=20% Similarity=0.412 Sum_probs=24.3
Q ss_pred HHHHHHhhhhCCCCCCceeHHHHHHHHHHh
Q psy10242 11 NDFREAFSLFDKDGSGTITAKHLGIVMRSL 40 (77)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~el~~~l~~~ 40 (77)
..+.++|...|.+++|+++.+||.-++.-+
T Consensus 43 ~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 43 DVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 466777888999999999999999887654
No 100
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=95.77 E-value=0.028 Score=34.30 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHh
Q psy10242 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSL 40 (77)
Q Consensus 5 ~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~ 40 (77)
++.++......+|..+|.|++|.|+.+||..++...
T Consensus 351 Is~~E~~~~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 351 ITREEWLGSDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred CcHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 444555456889999999999999999999988764
No 101
>KOG1707|consensus
Probab=95.50 E-value=0.029 Score=35.83 Aligned_cols=67 Identities=16% Similarity=0.301 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCC-CHHHHHHHHHhcCCCCCcceeHHHHHHHH
Q psy10242 4 FLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNP-SEAELEEMIREVDPEGKGIIDFPHFLELM 73 (77)
Q Consensus 4 ~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~f~~~~ 73 (77)
.+++.-+..+..+|..+|.++||.++..++..++....... .... .-...-.+..|.+++..|+..+
T Consensus 308 ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~---~~~~t~~~~~G~ltl~g~l~~W 375 (625)
T KOG1707|consen 308 ELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSP---YKDSTVKNERGWLTLNGFLSQW 375 (625)
T ss_pred eccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCc---ccccceecccceeehhhHHHHH
Confidence 45677788999999999999999999999999999864322 1000 0001112367888988888765
No 102
>KOG3555|consensus
Probab=95.43 E-value=0.042 Score=33.16 Aligned_cols=67 Identities=13% Similarity=0.111 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 5 ~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
+.+..-..+.=+|.++|.+.+|.++..|++.+-.. -...=++.+|..-|...+|.|+-.|+..++.+
T Consensus 244 ~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 244 ILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred cCcchhhhhhhhhhccccccccccCHHHhhhhhcc----CchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 33455566777899999999999999998765432 34455778899999889999999999887643
No 103
>KOG0751|consensus
Probab=95.40 E-value=0.15 Score=32.39 Aligned_cols=61 Identities=20% Similarity=0.334 Sum_probs=30.9
Q ss_pred HHHHHhhh---hCCCCCCceeHHHHHHHHHHh-CC-CCCHHHHHHHHHhcCCCCCcceeHHHHHHH
Q psy10242 12 DFREAFSL---FDKDGSGTITAKHLGIVMRSL-GR-NPSEAELEEMIREVDPEGKGIIDFPHFLEL 72 (77)
Q Consensus 12 ~~~~~f~~---~d~~~~g~i~~~el~~~l~~~-~~-~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~ 72 (77)
+++.+|.. .+.++.-+.+.++|..-.-.+ +. .+++..++.+-...|..+||-|+|+||..+
T Consensus 34 eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~af 99 (694)
T KOG0751|consen 34 ELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAF 99 (694)
T ss_pred HHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHH
Confidence 44444433 345555566666654443332 22 234444444445555666666666666543
No 104
>KOG4347|consensus
Probab=95.39 E-value=0.037 Score=35.67 Aligned_cols=57 Identities=21% Similarity=0.228 Sum_probs=46.4
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHH
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFP 67 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 67 (77)
..-+.++|+.+|.+++|.++..++...|..+...-..+.+..+|..++.+.+ ..+-+
T Consensus 554 ~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e 610 (671)
T KOG4347|consen 554 LIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDRE 610 (671)
T ss_pred HHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccc
Confidence 3467788999999999999999999999988766677788889999888776 54433
No 105
>KOG0998|consensus
Probab=95.37 E-value=0.0089 Score=39.66 Aligned_cols=68 Identities=19% Similarity=0.285 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHH
Q psy10242 4 FLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELM 73 (77)
Q Consensus 4 ~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~ 73 (77)
.+++.....+.++|...|.+++|.|+..+....+.. .+++...+...|...+....|.+++.+|...+
T Consensus 276 ~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~ 343 (847)
T KOG0998|consen 276 KVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAM 343 (847)
T ss_pred ccChHHHHHHHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhh
Confidence 345667778888999999999999999998888776 56788899999999999999999999776554
No 106
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=95.32 E-value=0.22 Score=27.27 Aligned_cols=63 Identities=17% Similarity=0.248 Sum_probs=46.0
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHHh-------CCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHH
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSL-------GRNPSEAELEEMIREVDPEGKGIIDFPHFLELM 73 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~ 73 (77)
..++.++|.+++..+.+.++..|+..+++.- |..-+.-++..++... .+++|.+..++-..++
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 4578889999999889999999999999872 2222334455555554 5678999888776654
No 107
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=95.32 E-value=0.051 Score=25.94 Aligned_cols=31 Identities=10% Similarity=0.225 Sum_probs=26.2
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHHh
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSL 40 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~ 40 (77)
...+..++..+|.+++|.|+.++|..++...
T Consensus 50 ~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 50 PEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 3467778888999999999999999888764
No 108
>KOG0038|consensus
Probab=95.25 E-value=0.066 Score=28.64 Aligned_cols=59 Identities=14% Similarity=0.279 Sum_probs=41.8
Q ss_pred HhhhhCCCCCCceeHHHHHHHHHHhCCC-CCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 16 AFSLFDKDGSGTITAKHLGIVMRSLGRN-PSEAELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 16 ~f~~~d~~~~g~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
+...+-.+|.|.++.++|..++..+..- +..-.+.-.|+.||-+.++.|.-.++...+.
T Consensus 76 i~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~ 135 (189)
T KOG0038|consen 76 ICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLT 135 (189)
T ss_pred HHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHH
Confidence 3345567889999999999998876432 2222344467788989999888777776654
No 109
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=94.95 E-value=0.042 Score=28.04 Aligned_cols=32 Identities=16% Similarity=0.383 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 43 NPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
.+++++++.+|..+..|..|+|.|-+|+.-+.
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 46889999999999999999999999997653
No 110
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.81 E-value=0.32 Score=26.62 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=23.6
Q ss_pred HHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCC
Q psy10242 11 NDFREAFSLFDKDGSGTITAKHLGIVMRSLGRN 43 (77)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~ 43 (77)
..+++=..-+|.|+||.|..-|--..++.+|.+
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~ 39 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFG 39 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCC
Confidence 356666677899999999988866666554433
No 111
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=94.48 E-value=0.26 Score=24.10 Aligned_cols=62 Identities=24% Similarity=0.469 Sum_probs=40.1
Q ss_pred HHHHHHhhhhCCCCCCceeHHHHHHHHHHh-------C----CCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 11 NDFREAFSLFDKDGSGTITAKHLGIVMRSL-------G----RNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~el~~~l~~~-------~----~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
++++-+|..+ .|++|.++...|...|... | .......++.+|.... ....|+-++|+..+..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHh
Confidence 5677788887 6778999999988888652 2 2235666777888762 3457999999998864
No 112
>KOG0751|consensus
Probab=93.94 E-value=0.2 Score=31.86 Aligned_cols=63 Identities=21% Similarity=0.194 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcC-CCCCcceeHHHHH
Q psy10242 8 DQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVD-PEGKGIIDFPHFL 70 (77)
Q Consensus 8 ~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~f~ 70 (77)
-+.+.-.+.|+..|+.++|.|+.-+++.++-..-..+.+..++..+.... .+..-+++|..|.
T Consensus 176 ~~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~ 239 (694)
T KOG0751|consen 176 FQLEHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFN 239 (694)
T ss_pred HHHHHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHH
Confidence 34566788999999999999999999999988766666666666555443 3444456665554
No 113
>KOG1707|consensus
Probab=93.91 E-value=0.35 Score=31.26 Aligned_cols=51 Identities=20% Similarity=0.352 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHH-hCCCCCHHHHHHH
Q psy10242 2 DSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRS-LGRNPSEAELEEM 52 (77)
Q Consensus 2 ~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~-~~~~~~~~~~~~~ 52 (77)
++.+.+.....+..+|...|.+.+|.++..|+...=+. .+.++.+.++..+
T Consensus 186 ~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~v 237 (625)
T KOG1707|consen 186 EQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDV 237 (625)
T ss_pred cccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHH
Confidence 46778889999999999999999999999998776655 4667777665543
No 114
>KOG2871|consensus
Probab=92.57 E-value=0.23 Score=30.44 Aligned_cols=38 Identities=32% Similarity=0.483 Sum_probs=31.9
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHH
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEA 47 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~ 47 (77)
...+++.|..+|+.++|+|+.+-++.++...+...+..
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~ 345 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEP 345 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCH
Confidence 56889999999999999999999999998877444433
No 115
>PLN02222 phosphoinositide phospholipase C 2
Probab=91.82 E-value=1.6 Score=28.42 Aligned_cols=63 Identities=11% Similarity=0.358 Sum_probs=45.9
Q ss_pred HHHHHHhhhhCCCCCCceeHHHHHHHHHHhCC--CCCHHHHHHHHHhcCC-CCCcceeHHHHHHHHHh
Q psy10242 11 NDFREAFSLFDKDGSGTITAKHLGIVMRSLGR--NPSEAELEEMIREVDP-EGKGIIDFPHFLELMMK 75 (77)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~--~~~~~~~~~~~~~~~~-~~~~~i~~~~f~~~~~~ 75 (77)
.++..+|..+-. ++.++.++|...|..... ..+.+.+..++..+.. ...+.++++.|..++..
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 366777777653 479999999999998643 2466777888887642 23567999999998753
No 116
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=91.42 E-value=0.37 Score=24.43 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=18.2
Q ss_pred HHHHHhhhhCCCCCCceeHHHHHH
Q psy10242 12 DFREAFSLFDKDGSGTITAKHLGI 35 (77)
Q Consensus 12 ~~~~~f~~~d~~~~g~i~~~el~~ 35 (77)
.+...|..+|.+++|.|+..|...
T Consensus 89 C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 89 CARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCHHHHcc
Confidence 466778899999999999988754
No 117
>PLN02952 phosphoinositide phospholipase C
Probab=91.37 E-value=1.3 Score=28.87 Aligned_cols=51 Identities=12% Similarity=0.259 Sum_probs=35.4
Q ss_pred CCCceeHHHHHHHHHHhCC--CCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 24 GSGTITAKHLGIVMRSLGR--NPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 24 ~~g~i~~~el~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
+.|.++.++|..+.+.+.. ...+.++..+|..+..+. +.++.++|..++..
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~ 65 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVL 65 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHH
Confidence 3578888888777776532 236778888888885543 56888888877643
No 118
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=91.11 E-value=0.33 Score=25.64 Aligned_cols=50 Identities=14% Similarity=0.237 Sum_probs=26.5
Q ss_pred CceeHHHHHHHHHHhCCCCCHHHHHHHHHhcC-------CCCCcceeHHHHHHHHHhhC
Q psy10242 26 GTITAKHLGIVMRSLGRNPSEAELEEMIREVD-------PEGKGIIDFPHFLELMMKKV 77 (77)
Q Consensus 26 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~f~~~~~~~~ 77 (77)
+.++..||.++-+=+. .+...+..++..|. -+.++.|+|+.|..+|..++
T Consensus 6 ~~lsp~eF~qLq~y~e--ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yL 62 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSE--YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYL 62 (138)
T ss_dssp S-S-HHHHHHHHHHHH--H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHT
T ss_pred eccCHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHH
Confidence 5566677666544332 24445556666552 23455899999999887654
No 119
>PLN02228 Phosphoinositide phospholipase C
Probab=90.90 E-value=3.1 Score=27.13 Aligned_cols=63 Identities=10% Similarity=0.301 Sum_probs=44.9
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCC--CCCHHHHHHHHHhcCCC----CCcceeHHHHHHHHH
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSLGR--NPSEAELEEMIREVDPE----GKGIIDFPHFLELMM 74 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~--~~~~~~~~~~~~~~~~~----~~~~i~~~~f~~~~~ 74 (77)
..++..+|..+-. ++.++.++|...|..... ..+.+.+..++..+... ..+.++.+.|..++.
T Consensus 23 ~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 23 PVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred cHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhc
Confidence 3456666776643 368999999999988642 24556678888887643 245799999998874
No 120
>KOG2301|consensus
Probab=90.79 E-value=0.2 Score=35.82 Aligned_cols=70 Identities=20% Similarity=0.250 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCC----HHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 4 FLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPS----EAELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 4 ~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
.+++.+.+...+++..+|++..|+|+..++...++.+..++. ... +.+-.......++.|++.+-+-.+.
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~ 1483 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALT 1483 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHH
Confidence 467888999999999999999999999999999998744431 111 2222233445677787776655543
No 121
>KOG1265|consensus
Probab=90.63 E-value=2.5 Score=29.15 Aligned_cols=64 Identities=16% Similarity=0.295 Sum_probs=51.2
Q ss_pred HHHHHHhhhhCCCCCCceeHHHHHHHHHHhC----------CCCCHHHHHHHHHhcCCCC----CcceeHHHHHHHHH
Q psy10242 11 NDFREAFSLFDKDGSGTITAKHLGIVMRSLG----------RNPSEAELEEMIREVDPEG----KGIIDFPHFLELMM 74 (77)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~----------~~~~~~~~~~~~~~~~~~~----~~~i~~~~f~~~~~ 74 (77)
.++..+|..+-.++.-+++.++|..+|+.-. .+.+...++.+++.+..+. .|.++-+.|+.++.
T Consensus 221 ~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~ 298 (1189)
T KOG1265|consen 221 PEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLM 298 (1189)
T ss_pred hhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhh
Confidence 3677889999888889999999999998631 2346778889999987753 78889998888764
No 122
>PLN02230 phosphoinositide phospholipase C 4
Probab=90.33 E-value=3.5 Score=27.05 Aligned_cols=64 Identities=20% Similarity=0.310 Sum_probs=44.7
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCC---CCCHHHHHHHHHhcCC-------CCCcceeHHHHHHHHH
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSLGR---NPSEAELEEMIREVDP-------EGKGIIDFPHFLELMM 74 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~---~~~~~~~~~~~~~~~~-------~~~~~i~~~~f~~~~~ 74 (77)
...+..+|..+-.++ +.++.++|...|...+. ..+.+.+..++..+.. -..+.++.+.|..++.
T Consensus 28 ~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~ 101 (598)
T PLN02230 28 VADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLF 101 (598)
T ss_pred cHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHc
Confidence 357788888885444 89999999999998752 2355666666654321 1234689999998874
No 123
>KOG0998|consensus
Probab=90.24 E-value=0.18 Score=33.83 Aligned_cols=69 Identities=20% Similarity=0.258 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 4 FLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 4 ~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
...+.....+..+|+..|+.++|.|+..+-...+... .+....+-++|...+..+.|.++...|...++
T Consensus 4 ~~~~~~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s--~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lr 72 (847)
T KOG0998|consen 4 GLSPPGQPLFDQYFKSADPQGDGRITGAEAVAFLSKS--GLPDQVLGQIWSLADSSGKGFLNRQGFYAALR 72 (847)
T ss_pred CCCCCccchHHHhhhccCcccCCcccHHHhhhhhhcc--ccchhhhhccccccccccCCccccccccccch
Confidence 3344455678889999999999999999987777764 46777888899999888888888887776553
No 124
>KOG3866|consensus
Probab=89.76 E-value=1.4 Score=26.71 Aligned_cols=60 Identities=18% Similarity=0.356 Sum_probs=40.9
Q ss_pred HhhhhCCCCCCceeHHHHHHHHHH----hCCCCC-HHH-----------HHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 16 AFSLFDKDGSGTITAKHLGIVMRS----LGRNPS-EAE-----------LEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 16 ~f~~~d~~~~g~i~~~el~~~l~~----~~~~~~-~~~-----------~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
.|...|.+++|+++.-++..++.. +--+-+ ..+ ....+...|.|.+.-|+.++|++...+
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 355667899999999888777654 211111 111 123677889999999999999986543
No 125
>KOG1955|consensus
Probab=89.35 E-value=0.5 Score=30.22 Aligned_cols=31 Identities=16% Similarity=0.338 Sum_probs=26.8
Q ss_pred HHHHHHHHhhhhCCCCCCceeHHHHHHHHHH
Q psy10242 9 QVNDFREAFSLFDKDGSGTITAKHLGIVMRS 39 (77)
Q Consensus 9 ~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~ 39 (77)
.+.++..+|...|.+++|.++..||+.++-.
T Consensus 263 pi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 263 PIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred chHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 3667888888999999999999999998854
No 126
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=88.22 E-value=1.5 Score=21.43 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=11.8
Q ss_pred CCHHHHHHHHHhcCCCCCcceeHHHHHHH
Q psy10242 44 PSEAELEEMIREVDPEGKGIIDFPHFLEL 72 (77)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~i~~~~f~~~ 72 (77)
++..+...+...+........++.+|...
T Consensus 34 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 62 (104)
T cd07313 34 LDAEEAAELLAEAEALEEEAPDLYEFTSL 62 (104)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 34444444444443333333344444443
No 127
>KOG0041|consensus
Probab=86.10 E-value=1.7 Score=24.70 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=22.8
Q ss_pred HHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 49 LEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 49 ~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
...+|..||.+.||.|++.++...|.+
T Consensus 101 ~~~~Fk~yDe~rDgfIdl~ELK~mmEK 127 (244)
T KOG0041|consen 101 AESMFKQYDEDRDGFIDLMELKRMMEK 127 (244)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHH
Confidence 455888999999999999999887754
No 128
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=85.15 E-value=3.4 Score=20.68 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=35.7
Q ss_pred HHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcC---CCCCcceeHHHHHHHHH
Q psy10242 12 DFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVD---PEGKGIIDFPHFLELMM 74 (77)
Q Consensus 12 ~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~f~~~~~ 74 (77)
.+.+-|..+-. +|+++.+.|..++. ..-+.+-..++|..+. .-..+.|+.+++..++.
T Consensus 31 ~VE~RFd~La~--dG~L~rs~Fg~CIG---M~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~ 91 (100)
T PF08414_consen 31 EVEKRFDKLAK--DGLLPRSDFGECIG---MKDSKEFAGELFDALARRRGIKGDSITKDELKEFWE 91 (100)
T ss_dssp HHHHHHHHH-B--TTBEEGGGHHHHHT-----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHH
T ss_pred HHHHHHHHhCc--CCcccHHHHHHhcC---CcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHH
Confidence 45566776666 89999999999875 3345565566665542 11256789888877764
No 129
>PLN02952 phosphoinositide phospholipase C
Probab=84.47 E-value=9.4 Score=25.23 Aligned_cols=63 Identities=17% Similarity=0.327 Sum_probs=42.6
Q ss_pred HHHHHHhhhhCCCCCCceeHHHHHHHHHHhCC--CCCHHHHHHHHHhcCC-------CCCcceeHHHHHHHHH
Q psy10242 11 NDFREAFSLFDKDGSGTITAKHLGIVMRSLGR--NPSEAELEEMIREVDP-------EGKGIIDFPHFLELMM 74 (77)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~--~~~~~~~~~~~~~~~~-------~~~~~i~~~~f~~~~~ 74 (77)
.++..+|..+-.+ .+.++.++|...|..... ..+.+.+..++..+-. .....++++.|..++.
T Consensus 38 ~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 38 DDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred HHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHc
Confidence 4677778777543 478999999999998643 2455666666554311 1223589999998874
No 130
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=83.32 E-value=1.6 Score=15.43 Aligned_cols=15 Identities=33% Similarity=0.680 Sum_probs=8.4
Q ss_pred CCCCCCceeHHHHHH
Q psy10242 21 DKDGSGTITAKHLGI 35 (77)
Q Consensus 21 d~~~~g~i~~~el~~ 35 (77)
|.+++|.|+.-++..
T Consensus 1 DvN~DG~vna~D~~~ 15 (21)
T PF00404_consen 1 DVNGDGKVNAIDLAL 15 (21)
T ss_dssp -TTSSSSSSHHHHHH
T ss_pred CCCCCCcCCHHHHHH
Confidence 456667666666543
No 131
>PLN02223 phosphoinositide phospholipase C
Probab=81.96 E-value=12 Score=24.48 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=44.0
Q ss_pred HHHHHHHHhhhhCCCCCCceeHHHHHHHH---HHh-C-CCCCHHHHHHHHHhcCCC--------CCcceeHHHHHHHHHh
Q psy10242 9 QVNDFREAFSLFDKDGSGTITAKHLGIVM---RSL-G-RNPSEAELEEMIREVDPE--------GKGIIDFPHFLELMMK 75 (77)
Q Consensus 9 ~~~~~~~~f~~~d~~~~g~i~~~el~~~l---~~~-~-~~~~~~~~~~~~~~~~~~--------~~~~i~~~~f~~~~~~ 75 (77)
....+..+|..+- .+.|.++.+.+...+ ... + ...+.++.+.++..+-.. ..+.++.+.|..++..
T Consensus 14 ~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 3456778888873 567899999999988 333 2 234566666666654322 1245899999988743
No 132
>KOG3555|consensus
Probab=80.54 E-value=1.8 Score=26.60 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=43.7
Q ss_pred HHHHHHhhhhCCCCCCceeHHHHHHHHHHh---CCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHH
Q psy10242 11 NDFREAFSLFDKDGSGTITAKHLGIVMRSL---GRNPSEAELEEMIREVDPEGKGIIDFPHFLELM 73 (77)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~el~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~ 73 (77)
.+|+.+|..+-.+.++......+..+-..+ -.+.=...+-.+|..+|.+.++.|+..|...+.
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ 276 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIE 276 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhh
Confidence 388899998766655555544444443322 123445778899999999999999998887664
No 133
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=80.26 E-value=7.4 Score=21.60 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=23.7
Q ss_pred CCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q psy10242 21 DKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVD 57 (77)
Q Consensus 21 d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 57 (77)
..+.+|++..+++...+..-+...+.+++..+...-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 4577899999999999988776778888888887643
No 134
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=79.76 E-value=6.3 Score=20.00 Aligned_cols=43 Identities=23% Similarity=0.416 Sum_probs=28.1
Q ss_pred hhCCCCCCceeHHHHHHHHHH----------hCCCCCHHHHHHHHHhcCCCCC
Q psy10242 19 LFDKDGSGTITAKHLGIVMRS----------LGRNPSEAELEEMIREVDPEGK 61 (77)
Q Consensus 19 ~~d~~~~g~i~~~el~~~l~~----------~~~~~~~~~~~~~~~~~~~~~~ 61 (77)
-||+..+.+|+.+++...++. .|..++...+-+++.+....+.
T Consensus 11 LYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~ 63 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGE 63 (107)
T ss_pred ccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCC
Confidence 468888888888888888875 2444555555555555544433
No 135
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=79.03 E-value=4.7 Score=18.13 Aligned_cols=32 Identities=16% Similarity=0.312 Sum_probs=27.2
Q ss_pred CceeHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q psy10242 26 GTITAKHLGIVMRSLGRNPSEAELEEMIREVD 57 (77)
Q Consensus 26 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 57 (77)
-.+|.+|+...+..++..++..++-.+|..+-
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v~ 39 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQVH 39 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 46788999999999998899999888888753
No 136
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=78.63 E-value=9.1 Score=21.19 Aligned_cols=36 Identities=17% Similarity=0.115 Sum_probs=28.6
Q ss_pred CCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q psy10242 22 KDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVD 57 (77)
Q Consensus 22 ~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 57 (77)
.+.+|+++.+++...++.-+...+.+.+..+...-+
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD 63 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC
Confidence 477899999999998876556678888888776543
No 137
>PHA02105 hypothetical protein
Probab=78.28 E-value=5 Score=18.03 Aligned_cols=47 Identities=6% Similarity=0.030 Sum_probs=32.0
Q ss_pred ceeHHHHHHHHHHh---CCCCCHHHHHHHHHhcCCCCCc--ceeHHHHHHHH
Q psy10242 27 TITAKHLGIVMRSL---GRNPSEAELEEMIREVDPEGKG--IIDFPHFLELM 73 (77)
Q Consensus 27 ~i~~~el~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~--~i~~~~f~~~~ 73 (77)
+++.+++..++..- ..++..+.++++-..+....-. .++|++|-.++
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~ 55 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIM 55 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccc
Confidence 46778888888763 3566777777776666655433 46888887664
No 138
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.17 E-value=8.6 Score=20.63 Aligned_cols=60 Identities=18% Similarity=0.401 Sum_probs=42.3
Q ss_pred HHhhhhCCCCCCceeHHH---HHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHhhC
Q psy10242 15 EAFSLFDKDGSGTITAKH---LGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMKKV 77 (77)
Q Consensus 15 ~~f~~~d~~~~g~i~~~e---l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~~ 77 (77)
-.|...+.| |.++..| |+.++.. .+.++...+..+......-+...+++..|...+.+.|
T Consensus 34 Llf~Vm~AD--G~v~~~E~~a~r~il~~-~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~L 96 (148)
T COG4103 34 LLFHVMEAD--GTVSESEREAFRAILKE-NFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHL 96 (148)
T ss_pred HHHHHHhcc--cCcCHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 667777775 5566555 4444444 4667888888888887666666788888988887653
No 139
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=77.72 E-value=4.6 Score=17.26 Aligned_cols=46 Identities=13% Similarity=0.252 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy10242 3 SFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIRE 55 (77)
Q Consensus 3 ~~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 55 (77)
..+++.....|..+|.. +.+.+..+...+-..+| ++...|...|..
T Consensus 5 ~~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~n 50 (59)
T cd00086 5 TRFTPEQLEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQN 50 (59)
T ss_pred CcCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHHH
Confidence 35678888999999988 56778888888888765 666777766653
No 140
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=77.69 E-value=4.6 Score=17.32 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy10242 3 SFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIR 54 (77)
Q Consensus 3 ~~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~ 54 (77)
..+++++...|...|.. +.+++.++...+-..+| ++...|...|.
T Consensus 5 ~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~--l~~~~V~~WF~ 49 (57)
T PF00046_consen 5 TRFTKEQLKVLEEYFQE-----NPYPSKEEREELAKELG--LTERQVKNWFQ 49 (57)
T ss_dssp SSSSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHT--SSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-----hcccccccccccccccc--ccccccccCHH
Confidence 35788899999999986 66778788777777765 56677766654
No 141
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=77.54 E-value=3 Score=19.45 Aligned_cols=31 Identities=10% Similarity=0.132 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 44 PSEAELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
++......+...|+.=..++|+-++|+..++
T Consensus 22 l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR 52 (70)
T PF12174_consen 22 LPPSKMDLLQKHYEEFKKKKISREEFVRKLR 52 (70)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 3333433443333333345666666665543
No 142
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=77.40 E-value=5.7 Score=18.22 Aligned_cols=37 Identities=27% Similarity=0.444 Sum_probs=26.3
Q ss_pred hhCCCCCCceeHHHHHHHHHH----------hCCCCCHHHHHHHHHh
Q psy10242 19 LFDKDGSGTITAKHLGIVMRS----------LGRNPSEAELEEMIRE 55 (77)
Q Consensus 19 ~~d~~~~g~i~~~el~~~l~~----------~~~~~~~~~~~~~~~~ 55 (77)
-||+..+.+|+.+++..+++. .|..++...+-+++.+
T Consensus 11 LYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e 57 (64)
T PF07879_consen 11 LYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILE 57 (64)
T ss_pred cccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHH
Confidence 479999999999999999986 2444555555444443
No 143
>KOG4070|consensus
Probab=77.06 E-value=7 Score=21.23 Aligned_cols=60 Identities=18% Similarity=0.340 Sum_probs=36.1
Q ss_pred HHHhhhh-CCCCCC-ceeHHHHHHHHHHhC----CCCCHHHHHHHHHhcCCCCCcceeHHHHHHHH
Q psy10242 14 REAFSLF-DKDGSG-TITAKHLGIVMRSLG----RNPSEAELEEMIREVDPEGKGIIDFPHFLELM 73 (77)
Q Consensus 14 ~~~f~~~-d~~~~g-~i~~~el~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~ 73 (77)
.+.|..+ |+..+| .++...+..+++..+ ...+.-.+...|..+....-..++|++|...+
T Consensus 18 f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal 83 (180)
T KOG4070|consen 18 FRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKAL 83 (180)
T ss_pred HHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHH
Confidence 3334444 444455 467777888887753 33444445556666655556678999996554
No 144
>KOG3449|consensus
Probab=76.94 E-value=8.1 Score=19.72 Aligned_cols=45 Identities=16% Similarity=0.338 Sum_probs=37.1
Q ss_pred HHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q psy10242 13 FREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVD 57 (77)
Q Consensus 13 ~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 57 (77)
+...|...+.-++...+..++..+|...|.....+.++.++....
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 344566667777778899999999999999999999999888873
No 145
>KOG0169|consensus
Probab=76.13 E-value=22 Score=24.26 Aligned_cols=60 Identities=15% Similarity=0.251 Sum_probs=41.5
Q ss_pred HHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 11 NDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
.....+|+..+...++.+...++.........+. ++..++..+..+ .+.++.+++..++.
T Consensus 172 ~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~~-~~~ls~~~L~~Fl~ 231 (746)
T KOG0169|consen 172 SKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFVQYSHG-KEYLSTDDLLRFLE 231 (746)
T ss_pred HHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHHHHhCC-CCccCHHHHHHHHH
Confidence 3566677777888889999988888887765443 666666666544 55666666665553
No 146
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=75.83 E-value=6.6 Score=18.15 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=24.4
Q ss_pred eHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC
Q psy10242 29 TAKHLGIVMRSLGRNPSEAELEEMIREVDPE 59 (77)
Q Consensus 29 ~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~ 59 (77)
+.+++..++...+..++..++..++..-+..
T Consensus 15 ~d~~m~~if~l~~~~vs~~el~a~lrke~~~ 45 (68)
T PF07308_consen 15 KDDDMIEIFALAGFEVSKAELSAWLRKEDEK 45 (68)
T ss_pred ChHHHHHHHHHcCCccCHHHHHHHHCCCCCc
Confidence 4567888888888899999998888875444
No 147
>PF09883 DUF2110: Uncharacterized protein conserved in archaea (DUF2110); InterPro: IPR016757 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=75.59 E-value=6.5 Score=22.55 Aligned_cols=47 Identities=17% Similarity=0.165 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHhhh-hCCCCCCceeHHHHHHHHHHhCCCCCHHHH
Q psy10242 3 SFLTEDQVNDFREAFSL-FDKDGSGTITAKHLGIVMRSLGRNPSEAEL 49 (77)
Q Consensus 3 ~~~~~~~~~~~~~~f~~-~d~~~~g~i~~~el~~~l~~~~~~~~~~~~ 49 (77)
..+++++.++++.+-+. .|.-.-...+.++++.++...|+.-.-..+
T Consensus 142 ~rltd~q~d~l~~W~~~~~drl~Vnsatr~ev~~alnrtGH~rDi~~v 189 (225)
T PF09883_consen 142 ARLTDEQVDRLYEWTRDGTDRLNVNSATRSEVRAALNRTGHARDIVTV 189 (225)
T ss_pred cccCHHHHHHHHHHhhCCCCeEEEecccHHHHHHHHHhcccccceehh
Confidence 46888999999887764 444334556789999999998875443333
No 148
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=75.08 E-value=6.9 Score=17.98 Aligned_cols=32 Identities=31% Similarity=0.623 Sum_probs=26.9
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10242 25 SGTITAKHLGIVMRSLGRNPSEAELEEMIREV 56 (77)
Q Consensus 25 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 56 (77)
+--|+.+-++..+...|.+++...+++++...
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45678888999999999999999999888765
No 149
>PRK00523 hypothetical protein; Provisional
Probab=74.84 E-value=7.5 Score=18.29 Aligned_cols=32 Identities=28% Similarity=0.579 Sum_probs=26.7
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10242 25 SGTITAKHLGIVMRSLGRNPSEAELEEMIREV 56 (77)
Q Consensus 25 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 56 (77)
+--|+.+-++..+...|.++|...+++++...
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45678888888889999999999999888765
No 150
>KOG0040|consensus
Probab=74.79 E-value=18 Score=27.16 Aligned_cols=47 Identities=26% Similarity=0.387 Sum_probs=31.1
Q ss_pred HHHHHhhhhCCCCCCceeHHHHHHHHHHh--CCCCCHHHHHHHHHhcCC
Q psy10242 12 DFREAFSLFDKDGSGTITAKHLGIVMRSL--GRNPSEAELEEMIREVDP 58 (77)
Q Consensus 12 ~~~~~f~~~d~~~~g~i~~~el~~~l~~~--~~~~~~~~~~~~~~~~~~ 58 (77)
.+.++-...||+.+|+|+..+....+-.- ....+.++++..|...+.
T Consensus 2297 ~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~a 2345 (2399)
T KOG0040|consen 2297 EFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRALDA 2345 (2399)
T ss_pred hHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHhhc
Confidence 56677778899999999988877666442 222444566555555544
No 151
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=74.76 E-value=8.3 Score=18.76 Aligned_cols=49 Identities=10% Similarity=0.030 Sum_probs=34.6
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHH
Q psy10242 25 SGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELM 73 (77)
Q Consensus 25 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~ 73 (77)
+-.|+..+|...|...-...+..+...+=...|...++.|+.-||-...
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFt 68 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFT 68 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHH
T ss_pred CeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHH
Confidence 4679999999999997433444565667777888999999977765443
No 152
>KOG1954|consensus
Probab=73.85 E-value=8.3 Score=24.35 Aligned_cols=56 Identities=16% Similarity=0.275 Sum_probs=41.1
Q ss_pred HHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHH
Q psy10242 13 FREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLE 71 (77)
Q Consensus 13 ~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~ 71 (77)
..++|-.+-+- +|+|+...-+..+-. ..++...+-.+|...|.+++|.++=++|.-
T Consensus 446 yde~fy~l~p~-~gk~sg~~ak~~mv~--sklpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 446 YDEIFYTLSPV-NGKLSGRNAKKEMVK--SKLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred hHhhhhccccc-CceeccchhHHHHHh--ccCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 34455554443 788887766655544 457777888999999999999999999863
No 153
>KOG4301|consensus
Probab=73.49 E-value=15 Score=22.78 Aligned_cols=68 Identities=16% Similarity=0.245 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHh--hhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHH
Q psy10242 5 LTEDQVNDFREAF--SLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELM 73 (77)
Q Consensus 5 ~~~~~~~~~~~~f--~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~ 73 (77)
+..++.-.+.-.| ..+|+.+.|.++.--..-++.....+--.+.++-++.... +..|-+.+..|..++
T Consensus 102 id~e~sislllaflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl 171 (434)
T KOG4301|consen 102 IDVEQSISLLLAFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFL 171 (434)
T ss_pred ccHHHHHHHHHHHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHH
Confidence 4444433333334 4689999999998888888877654444566677777653 445555555444444
No 154
>KOG1264|consensus
Probab=72.63 E-value=12 Score=26.11 Aligned_cols=71 Identities=24% Similarity=0.275 Sum_probs=46.8
Q ss_pred CHHHHH-HHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHH-HHHHHHhcCCCCCcceeHHHHHHHHHhhC
Q psy10242 6 TEDQVN-DFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAE-LEEMIREVDPEGKGIIDFPHFLELMMKKV 77 (77)
Q Consensus 6 ~~~~~~-~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~f~~~~~~~~ 77 (77)
.+.+++ .+++.+=..|......|+..++...|..+...++... ..+-+..- ....+.++|++|..++.+.|
T Consensus 138 ~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted-~~~k~dlsf~~f~~ly~~lm 210 (1267)
T KOG1264|consen 138 TPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTED-GARKDDLSFEQFHLLYKKLM 210 (1267)
T ss_pred ChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHh-hhccccccHHHHHHHHHHHh
Confidence 344444 4555566667767788999999999988777665443 22333333 23456799999998886643
No 155
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=72.47 E-value=3.9 Score=22.84 Aligned_cols=43 Identities=21% Similarity=0.365 Sum_probs=34.2
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHH
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEM 52 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~ 52 (77)
-+.++++|..+|+.+=-..+.+++..++...|..-+...+...
T Consensus 54 Re~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~ 96 (188)
T COG2818 54 REAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKAT 96 (188)
T ss_pred HHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHH
Confidence 4578999999999988899999999999987765555554443
No 156
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=72.29 E-value=6.5 Score=16.45 Aligned_cols=31 Identities=19% Similarity=0.460 Sum_probs=21.4
Q ss_pred HHHHHHHHhhhhC-CCC-CCceeHHHHHHHHHH
Q psy10242 9 QVNDFREAFSLFD-KDG-SGTITAKHLGIVMRS 39 (77)
Q Consensus 9 ~~~~~~~~f~~~d-~~~-~g~i~~~el~~~l~~ 39 (77)
.+..+..+|.+|- .+| ...++..||+.++..
T Consensus 4 ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 4 AIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 3456677777763 334 457888998888875
No 157
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=72.23 E-value=9.1 Score=18.13 Aligned_cols=43 Identities=23% Similarity=0.303 Sum_probs=31.1
Q ss_pred eHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC-CCcceeHHHHHHHH
Q psy10242 29 TAKHLGIVMRSLGRNPSEAELEEMIREVDPE-GKGIIDFPHFLELM 73 (77)
Q Consensus 29 ~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~f~~~~ 73 (77)
...++..+|. |.+++.+.+...+...+.. --+.++-++++.++
T Consensus 43 ~i~~le~~L~--G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 43 DIEELEEALI--GCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp CHHHHHHHHT--TCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHH--hcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 3566666664 7788999999988887543 34578888888764
No 158
>PF13551 HTH_29: Winged helix-turn helix
Probab=71.38 E-value=10 Score=18.41 Aligned_cols=51 Identities=18% Similarity=0.289 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHH-HH-hCCCCCHHHHHHHHHh
Q psy10242 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVM-RS-LGRNPSEAELEEMIRE 55 (77)
Q Consensus 5 ~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l-~~-~~~~~~~~~~~~~~~~ 55 (77)
+++++...+.+++.....++.+..+...+...+ +. .+..++...+..++..
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~r~L~~ 110 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIRRILKR 110 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHHHHHHH
Confidence 455666666666655444433356666666644 32 3555666666655543
No 159
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=71.31 E-value=7.9 Score=17.46 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=19.1
Q ss_pred ceeHHHHHHHHHHhCCCCCHHHHHH
Q psy10242 27 TITAKHLGIVMRSLGRNPSEAELEE 51 (77)
Q Consensus 27 ~i~~~el~~~l~~~~~~~~~~~~~~ 51 (77)
.|+.++|..+|+.+....+..++..
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ 53 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKK 53 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 4788999999998877777777654
No 160
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=70.62 E-value=5.8 Score=17.86 Aligned_cols=22 Identities=14% Similarity=0.030 Sum_probs=14.9
Q ss_pred HHhhhhCCCCCCceeHHHHHHH
Q psy10242 15 EAFSLFDKDGSGTITAKHLGIV 36 (77)
Q Consensus 15 ~~f~~~d~~~~g~i~~~el~~~ 36 (77)
.+...++.+++|+|+.+.+...
T Consensus 19 fL~~~~~~~~~g~Vpi~~i~~F 40 (61)
T PF05383_consen 19 FLRSQMDSNPDGWVPISTILSF 40 (61)
T ss_dssp HHHHHHCTTTTTBEEHHHHTTS
T ss_pred HHHHHHHhcCCCcEeHHHHHch
Confidence 3445667778899997765543
No 161
>KOG4718|consensus
Probab=69.05 E-value=19 Score=20.72 Aligned_cols=56 Identities=16% Similarity=0.322 Sum_probs=35.6
Q ss_pred CCCCCCHHHHHHHHHHhhhhCCC-CCCceeHHHH-HHHHHHhCCCCCHHHHHHHHHhc
Q psy10242 1 MDSFLTEDQVNDFREAFSLFDKD-GSGTITAKHL-GIVMRSLGRNPSEAELEEMIREV 56 (77)
Q Consensus 1 m~~~~~~~~~~~~~~~f~~~d~~-~~g~i~~~el-~~~l~~~~~~~~~~~~~~~~~~~ 56 (77)
||+.+++.+++-++++...+-.. ..+.-+..-. ...+..-+.++....++.++..+
T Consensus 89 maT~f~~nEielfrkalE~im~sed~~~asst~~~~~vlq~k~k~L~ks~iE~lLqkf 146 (235)
T KOG4718|consen 89 MATGFTANEIELFRKALEKIMSSEDCHIASSTAYNDIVLQAKSKPLKKSRIEELLQKF 146 (235)
T ss_pred hcCCCCHHHHHHHHHHHHHHHhhhHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 68889999999998888876554 2333222222 22233336678888888777665
No 162
>KOG4578|consensus
Probab=68.62 E-value=5.6 Score=24.41 Aligned_cols=29 Identities=14% Similarity=0.050 Sum_probs=25.0
Q ss_pred HHHHHhhhhCCCCCCceeHHHHHHHHHHh
Q psy10242 12 DFREAFSLFDKDGSGTITAKHLGIVMRSL 40 (77)
Q Consensus 12 ~~~~~f~~~d~~~~g~i~~~el~~~l~~~ 40 (77)
..+++|+..|.|+|..|+..|+...|...
T Consensus 371 C~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 371 CSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred HhhhcchhcccCCCceecHHHHhhhhccc
Confidence 55677888999999999999999988764
No 163
>KOG0506|consensus
Probab=67.94 E-value=28 Score=22.78 Aligned_cols=58 Identities=22% Similarity=0.364 Sum_probs=41.7
Q ss_pred hhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc---C-----CCCCcceeHHHHHHHHH
Q psy10242 17 FSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREV---D-----PEGKGIIDFPHFLELMM 74 (77)
Q Consensus 17 f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~---~-----~~~~~~i~~~~f~~~~~ 74 (77)
|..+--..++.++.-.|..+|+..|..-+...+..++... + ....+.++.+.|..++.
T Consensus 92 FyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 92 FYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 4444333379999999999999999887777777766643 2 23456778888877764
No 164
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=67.54 E-value=7.9 Score=18.36 Aligned_cols=45 Identities=7% Similarity=0.193 Sum_probs=26.3
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCC
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDP 58 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~ 58 (77)
...++++... ....|+|+.+++..+|.. ..++...+..++..+..
T Consensus 6 ~~~i~~Li~~--gK~~G~lT~~eI~~~L~~--~~~~~e~id~i~~~L~~ 50 (82)
T PF03979_consen 6 EEAIKKLIEK--GKKKGYLTYDEINDALPE--DDLDPEQIDEIYDTLED 50 (82)
T ss_dssp HHHHHHHHHH--HHHHSS-BHHHHHHH-S---S---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHH--HhhcCcCCHHHHHHHcCc--cCCCHHHHHHHHHHHHH
Confidence 3344444433 123799999999999885 34778888888887643
No 165
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=66.91 E-value=24 Score=20.80 Aligned_cols=52 Identities=10% Similarity=0.071 Sum_probs=28.9
Q ss_pred CCCCceeHHHHHHHHHHh--CCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 23 DGSGTITAKHLGIVMRSL--GRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 23 ~~~g~i~~~el~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
.-||.++..|.. ..+.+ ...++.+..+.....+...+....++.+|+..+..
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~ 120 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRS 120 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHH
Confidence 448889988877 44443 23455665333333333333334677777776643
No 166
>PHA02943 hypothetical protein; Provisional
Probab=65.83 E-value=20 Score=19.58 Aligned_cols=49 Identities=10% Similarity=0.163 Sum_probs=34.5
Q ss_pred CCCCCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q psy10242 1 MDSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVD 57 (77)
Q Consensus 1 m~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 57 (77)
|+.+.++.-..++.++...+ +.|+.+..++.+.+. ++..+++..+...+
T Consensus 1 MPr~~sd~v~~R~~eILE~L---k~G~~TtseIAkaLG-----lS~~qa~~~LyvLE 49 (165)
T PHA02943 1 MPRGMSDTVHTRMIKTLRLL---ADGCKTTSRIANKLG-----VSHSMARNALYQLA 49 (165)
T ss_pred CCcchhHHHHHHHHHHHHHH---hcCCccHHHHHHHHC-----CCHHHHHHHHHHHH
Confidence 77888888888888888887 678888777666543 45556555555443
No 167
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=65.60 E-value=3 Score=21.41 Aligned_cols=49 Identities=22% Similarity=0.295 Sum_probs=22.4
Q ss_pred CCceeHHHHHHHHHHh--CCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHH
Q psy10242 25 SGTITAKHLGIVMRSL--GRNPSEAELEEMIREVDPEGKGIIDFPHFLELM 73 (77)
Q Consensus 25 ~g~i~~~el~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~ 73 (77)
||.++.+|...+...+ ...++......+...+........++.+|+..+
T Consensus 37 DG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 87 (140)
T PF05099_consen 37 DGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLREL 87 (140)
T ss_dssp TSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 6777777765555443 223344444555544443333344455554443
No 168
>PRK01844 hypothetical protein; Provisional
Probab=63.98 E-value=15 Score=17.34 Aligned_cols=32 Identities=22% Similarity=0.537 Sum_probs=26.5
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10242 25 SGTITAKHLGIVMRSLGRNPSEAELEEMIREV 56 (77)
Q Consensus 25 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 56 (77)
+--|+.+-++..+...|.++|...+++++...
T Consensus 36 NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 36 NPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34678888888889999999999999888765
No 169
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=62.43 E-value=14 Score=16.77 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=28.0
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC
Q psy10242 25 SGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPE 59 (77)
Q Consensus 25 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~ 59 (77)
++-++..++...+...+..++...++.-+..++.+
T Consensus 11 ~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~ 45 (66)
T PF08461_consen 11 DKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERD 45 (66)
T ss_pred CCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHC
Confidence 46688888999998888888888888887776544
No 170
>KOG4004|consensus
Probab=61.86 E-value=7.2 Score=22.25 Aligned_cols=25 Identities=16% Similarity=0.034 Sum_probs=16.1
Q ss_pred HHHHHhhhhCCCCCCceeHHHHHHH
Q psy10242 12 DFREAFSLFDKDGSGTITAKHLGIV 36 (77)
Q Consensus 12 ~~~~~f~~~d~~~~g~i~~~el~~~ 36 (77)
.....|...|.+++|+|+.++....
T Consensus 223 c~~~f~e~cd~~nd~~ial~ew~~c 247 (259)
T KOG4004|consen 223 CTTRFFETCDLDNDKYIALDEWAGC 247 (259)
T ss_pred hchhhhhcccCCCCCceeHHHhhcc
Confidence 4455566777777777776665543
No 171
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=60.52 E-value=15 Score=16.41 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCc----eeHHHHHHHHHHhC
Q psy10242 3 SFLTEDQVNDFREAFSLFDKDGSGT----ITAKHLGIVMRSLG 41 (77)
Q Consensus 3 ~~~~~~~~~~~~~~f~~~d~~~~g~----i~~~el~~~l~~~~ 41 (77)
+.++.++...+...|.. .|+ .+..+...+...+|
T Consensus 6 T~Ft~~Q~~~Le~~fe~-----~~y~~~~~~~~~r~~la~~lg 43 (58)
T TIGR01565 6 TKFTAEQKEKMRDFAEK-----LGWKLKDKRREEVREFCEEIG 43 (58)
T ss_pred CCCCHHHHHHHHHHHHH-----cCCCCCCCCHHHHHHHHHHhC
Confidence 46788888899988877 455 66666666666655
No 172
>KOG2278|consensus
Probab=59.93 E-value=20 Score=20.04 Aligned_cols=38 Identities=16% Similarity=0.322 Sum_probs=30.0
Q ss_pred hCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q psy10242 20 FDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVD 57 (77)
Q Consensus 20 ~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 57 (77)
+.-.++|+++.+++-+.-+.-+...+.++++.+...-+
T Consensus 27 L~m~~dGfvpv~~lL~lnq~r~~~~t~ddi~riVk~nd 64 (207)
T KOG2278|consen 27 LNMRGDGFVPVEDLLNLNQFRGANHTIDDIRRIVKRND 64 (207)
T ss_pred ccccCCCceEHHHHhccchhcccCCcHHHHHHHHhccc
Confidence 45678999999998887777777777888888877644
No 173
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=59.86 E-value=37 Score=20.67 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=14.4
Q ss_pred CceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10242 26 GTITAKHLGIVMRSLGRNPSEAELEEMIREV 56 (77)
Q Consensus 26 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 56 (77)
|.|+++|-...++......+.+.++.++..+
T Consensus 301 G~itReeal~~v~~~d~~~~~~~~~~~~~~l 331 (343)
T TIGR03573 301 GRITREEAIELVKEYDGEFPKEDLEYFLKYL 331 (343)
T ss_pred CCCCHHHHHHHHHHhcccccHHHHHHHHHHh
Confidence 5555555444444433333344444444444
No 174
>KOG4347|consensus
Probab=59.85 E-value=25 Score=23.67 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=25.3
Q ss_pred CHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 45 SEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
+..-+..+|...|.+.+|-|+|.+++..+..
T Consensus 553 s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~ 583 (671)
T KOG4347|consen 553 SLIFLERLFRLLDDSMTGLLTFKDLVSGLSI 583 (671)
T ss_pred HHHHHHHHHHhcccCCcceeEHHHHHHHHHH
Confidence 3344677899999999999999999988753
No 175
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=59.37 E-value=11 Score=14.58 Aligned_cols=14 Identities=21% Similarity=0.470 Sum_probs=8.2
Q ss_pred CcceeHHHHHHHHH
Q psy10242 61 KGIIDFPHFLELMM 74 (77)
Q Consensus 61 ~~~i~~~~f~~~~~ 74 (77)
.|+|++++++....
T Consensus 2 ~~~i~~~~~~d~a~ 15 (33)
T PF09373_consen 2 SGTISKEEYLDMAS 15 (33)
T ss_pred CceecHHHHHHHHH
Confidence 35566666666554
No 176
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=58.81 E-value=14 Score=20.59 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=34.8
Q ss_pred HHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy10242 9 QVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIR 54 (77)
Q Consensus 9 ~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~ 54 (77)
....++++|..+|+..=...+.+++..++...+..-+...++.+..
T Consensus 51 Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~ 96 (179)
T TIGR00624 51 KRENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIA 96 (179)
T ss_pred hHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHH
Confidence 3457889999999988888888999998887766556655555444
No 177
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=58.16 E-value=26 Score=18.25 Aligned_cols=65 Identities=15% Similarity=0.222 Sum_probs=40.1
Q ss_pred HHHHHHHHhhhhCCCC--CCceeHHHHHHHHHHhC------CCC-CH-----------HHHHHHHHhcCCCCCcceeHHH
Q psy10242 9 QVNDFREAFSLFDKDG--SGTITAKHLGIVMRSLG------RNP-SE-----------AELEEMIREVDPEGKGIIDFPH 68 (77)
Q Consensus 9 ~~~~~~~~f~~~d~~~--~g~i~~~el~~~l~~~~------~~~-~~-----------~~~~~~~~~~~~~~~~~i~~~~ 68 (77)
.+..+.++|+....+. +..++..++..++..+- .+. .. --++.++..||.+.+|+|..-+
T Consensus 39 ~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls 118 (127)
T PF09068_consen 39 DLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLS 118 (127)
T ss_dssp -HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHH
T ss_pred eHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhH
Confidence 4556778888765433 57799999988887641 111 11 1246688899999999999888
Q ss_pred HHHHH
Q psy10242 69 FLELM 73 (77)
Q Consensus 69 f~~~~ 73 (77)
|...+
T Consensus 119 ~KvaL 123 (127)
T PF09068_consen 119 FKVAL 123 (127)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76554
No 178
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=55.43 E-value=12 Score=20.96 Aligned_cols=46 Identities=13% Similarity=0.325 Sum_probs=34.1
Q ss_pred HHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy10242 9 QVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIR 54 (77)
Q Consensus 9 ~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~ 54 (77)
....++++|..+|+..=-..+.+++..++...+..-+...++.++.
T Consensus 52 Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~ 97 (187)
T PRK10353 52 KRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIG 97 (187)
T ss_pred HHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHH
Confidence 3457889999999988777888999998887665555555554443
No 179
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=53.95 E-value=25 Score=16.86 Aligned_cols=64 Identities=9% Similarity=0.247 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHH----hCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRS----LGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 5 ~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
.+.+++..+..-+...|-. +...++++++. ++.+.+.+..+.+....-.++- ..++..+...|.
T Consensus 10 V~~~~i~kLA~sv~~adlq-----dE~~vR~lIk~vs~~an~~Vs~~~ed~IV~~I~~~~~-p~d~~~l~Km~~ 77 (79)
T PF14069_consen 10 VNKEDIFKLANSVQKADLQ-----DEKKVRQLIKQVSQIANKPVSKEQEDQIVQAIINQKI-PNDMNHLMKMMN 77 (79)
T ss_pred CCHHHHHHHHHhcchhhcc-----cHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC-CcCHHHHHHHHc
Confidence 3445555555555555543 45567777765 3788899888888888765554 667887777765
No 180
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=53.94 E-value=32 Score=19.04 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=17.0
Q ss_pred CCCCCceeHHHHHHHHHHhCCC
Q psy10242 22 KDGSGTITAKHLGIVMRSLGRN 43 (77)
Q Consensus 22 ~~~~g~i~~~el~~~l~~~~~~ 43 (77)
.+|+|.+..-=+..++...|.+
T Consensus 126 ~DGNGRt~Rll~~l~L~~~g~~ 147 (186)
T TIGR02613 126 PNGNGRHARLATDLLLEQQGYS 147 (186)
T ss_pred CCCCcHHHHHHHHHHHHHCCCC
Confidence 4888988887777778777753
No 181
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.88 E-value=24 Score=16.57 Aligned_cols=32 Identities=22% Similarity=0.594 Sum_probs=26.1
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10242 25 SGTITAKHLGIVMRSLGRNPSEAELEEMIREV 56 (77)
Q Consensus 25 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 56 (77)
+--|+.+-++..+...|.++|+..+++++...
T Consensus 36 NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 45678888888888889999999888888765
No 182
>PRK14074 rpsF 30S ribosomal protein S6; Provisional
Probab=53.56 E-value=42 Score=19.77 Aligned_cols=69 Identities=14% Similarity=0.283 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 3 SFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 3 ~~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
+.+++.+.+.+-+-|...=.+..|.+-..+.+-+...-...++..+++-.-.... ..-|.|.+|+.-+.
T Consensus 12 q~ls~~q~e~l~e~~~~~l~~~~~~v~~~e~wG~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 80 (257)
T PRK14074 12 QGLLQQEVEEMVQELAVLLKNIKADVMFQQIKGILEKGNDKLTKQELEVRAEDIK---ESLIAYSDFLEDLT 80 (257)
T ss_pred ccccHHHHHHHHHHHHHHHHhcCCeeehhhhhhhhhcccchhhHHHHHhhHHHHH---HHHHHHHHHHHHHH
Confidence 4577888888888888877888899998888887776544555554432222111 12356666665543
No 183
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=53.13 E-value=26 Score=16.86 Aligned_cols=38 Identities=11% Similarity=0.023 Sum_probs=20.2
Q ss_pred HhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHH
Q psy10242 16 AFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMI 53 (77)
Q Consensus 16 ~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~ 53 (77)
+...++.+.+|+|+.+-+...=+--....+.+.+...+
T Consensus 28 L~~~~~~~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al 65 (82)
T cd08032 28 LREQIEKSRDGYIDISLLVSFNKMKKLTTDGKLIARAL 65 (82)
T ss_pred HHHHhcCCCCCCEeHHHHhcchHHHHHcCCHHHHHHHH
Confidence 34456677789999776555433322333333343333
No 184
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=53.06 E-value=49 Score=20.75 Aligned_cols=11 Identities=27% Similarity=0.676 Sum_probs=5.8
Q ss_pred ceeHHHHHHHH
Q psy10242 63 IIDFPHFLELM 73 (77)
Q Consensus 63 ~i~~~~f~~~~ 73 (77)
++.|.||+..+
T Consensus 42 RL~FNeFi~tm 52 (379)
T PF11593_consen 42 RLQFNEFIQTM 52 (379)
T ss_pred HHHHHHHHHHH
Confidence 44555555544
No 185
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=52.77 E-value=36 Score=18.35 Aligned_cols=32 Identities=9% Similarity=0.252 Sum_probs=24.1
Q ss_pred HHHHHHHHhhhhCCCCCCceeHHHHHHHHHHh
Q psy10242 9 QVNDFREAFSLFDKDGSGTITAKHLGIVMRSL 40 (77)
Q Consensus 9 ~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~ 40 (77)
.+..+...-...|..+.+++|.++++.++-.+
T Consensus 67 ~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 67 QLQQLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred HHHHHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 34455555666788888899999999988664
No 186
>KOG4403|consensus
Probab=52.52 E-value=62 Score=20.97 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=25.3
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHH
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRS 39 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~ 39 (77)
.+.++.+-+.+|-|.+|.|+.+|-..+++.
T Consensus 67 ~EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 67 YEAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred HHHHHHHHHhcccccCCCcccccchHHHHH
Confidence 457888888999999999999987777775
No 187
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=52.06 E-value=20 Score=15.07 Aligned_cols=45 Identities=16% Similarity=0.236 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy10242 4 FLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIRE 55 (77)
Q Consensus 4 ~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 55 (77)
.+++++...|...|.. +.+.+.++...+...+| ++...|...|..
T Consensus 6 ~~~~~~~~~L~~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~n 50 (56)
T smart00389 6 SFTPEQLEELEKEFQK-----NPYPSREEREELAAKLG--LSERQVKVWFQN 50 (56)
T ss_pred cCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHhHHH
Confidence 4678888888888875 33677788777777765 456666665543
No 188
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=51.82 E-value=46 Score=19.31 Aligned_cols=36 Identities=22% Similarity=0.413 Sum_probs=30.7
Q ss_pred CCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10242 21 DKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREV 56 (77)
Q Consensus 21 d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 56 (77)
-.+++|.++...+...+..+...++..++..+-...
T Consensus 161 vG~gegQVpL~kL~~~l~KLp~~lt~~ev~~v~~RL 196 (224)
T PF13829_consen 161 VGNGEGQVPLRKLQKTLMKLPRNLTKAEVDAVNKRL 196 (224)
T ss_pred ecCCCCceeHHHHHHHHHhCCccCCHHHHHHHHHHH
Confidence 357899999999999999998889999988776654
No 189
>KOG0039|consensus
Probab=50.95 E-value=59 Score=21.88 Aligned_cols=64 Identities=23% Similarity=0.415 Sum_probs=43.6
Q ss_pred HHHHHHHHhhhhCCCCCCceeHHHHHHHHHHh---CC-----CCCHHHHHHHHHhcCCCCCcceeHHHHHHHH
Q psy10242 9 QVNDFREAFSLFDKDGSGTITAKHLGIVMRSL---GR-----NPSEAELEEMIREVDPEGKGIIDFPHFLELM 73 (77)
Q Consensus 9 ~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~---~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~ 73 (77)
...+++-+|..+|. .+|.++.+++..++... +. ....+....++...+.+..+.+.+.++..++
T Consensus 16 ~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll 87 (646)
T KOG0039|consen 16 YDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILL 87 (646)
T ss_pred hhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHH
Confidence 35688889999998 89999999999888764 11 1122334456667777777776666655544
No 190
>PF06569 DUF1128: Protein of unknown function (DUF1128); InterPro: IPR009507 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=50.89 E-value=27 Score=16.40 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=7.3
Q ss_pred CCCHHHHHHHHHhc
Q psy10242 43 NPSEAELEEMIREV 56 (77)
Q Consensus 43 ~~~~~~~~~~~~~~ 56 (77)
.++..+++.+...+
T Consensus 53 ~fS~sEm~aI~~EL 66 (71)
T PF06569_consen 53 SFSPSEMQAIAEEL 66 (71)
T ss_pred CCCHHHHHHHHHHH
Confidence 45555555555443
No 191
>PF07199 DUF1411: Protein of unknown function (DUF1411); InterPro: IPR009850 This family represents a conserved region approximately 150 residues long that is sometimes repeated within some Babesia bovis proteins of unknown function.
Probab=50.85 E-value=45 Score=18.89 Aligned_cols=59 Identities=8% Similarity=0.128 Sum_probs=34.5
Q ss_pred HhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 16 AFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 16 ~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
-...++|...++-..+.+...|..-+...-+..+.+-+..++......-.++.|...+.
T Consensus 127 ~It~y~P~~~~f~vseNIVk~LNK~~~i~lp~~LA~~L~~i~tgk~~~~e~~~f~d~fa 185 (194)
T PF07199_consen 127 HITNYDPKNPIFAVSENIVKKLNKKGTIELPEDLAQQLCQIDTGKMRGYEWEVFTDCFA 185 (194)
T ss_pred HHHccCCCCcchhhHHHHHHHHcCCCCccchHHHHHHHhccccCccccchHHHHHHHHH
Confidence 34456777777777777777777755333344455555555554444445555555543
No 192
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=50.79 E-value=35 Score=17.96 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=22.9
Q ss_pred CCCCCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHH
Q psy10242 1 MDSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIV 36 (77)
Q Consensus 1 m~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~ 36 (77)
|+..+++++-+.+......+-.. +|.++..++...
T Consensus 1 Ma~~~T~eer~eLk~rIvElVRe-~GRiTi~ql~~~ 35 (127)
T PF06163_consen 1 MARVFTPEEREELKARIVELVRE-HGRITIKQLVAK 35 (127)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHH-cCCccHHHHHHH
Confidence 77788888877666554443332 688887776543
No 193
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=48.90 E-value=23 Score=14.85 Aligned_cols=39 Identities=21% Similarity=0.201 Sum_probs=22.9
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHH
Q psy10242 31 KHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELM 73 (77)
Q Consensus 31 ~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~ 73 (77)
+|...+|..+| +++.++...+..... ....+.++.+..-
T Consensus 4 ~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik~a 42 (47)
T PF07499_consen 4 EDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIKQA 42 (47)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHHHH
Confidence 45666777665 577788887777643 2235566665543
No 194
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=48.38 E-value=27 Score=15.67 Aligned_cols=14 Identities=0% Similarity=0.181 Sum_probs=5.6
Q ss_pred ceeHHHHHHHHHHh
Q psy10242 27 TITAKHLGIVMRSL 40 (77)
Q Consensus 27 ~i~~~el~~~l~~~ 40 (77)
.++.++...++..+
T Consensus 14 ~Ls~~e~~~~~~~i 27 (66)
T PF02885_consen 14 DLSREEAKAAFDAI 27 (66)
T ss_dssp ---HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 34555555555543
No 195
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=48.19 E-value=34 Score=16.69 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=25.4
Q ss_pred CceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC
Q psy10242 26 GTITAKHLGIVMRSLGRNPSEAELEEMIREVDPE 59 (77)
Q Consensus 26 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~ 59 (77)
..++..||...-+..+.+++..+++.+....-.+
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k 46 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGK 46 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 4577888888888888888888877777766443
No 196
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=48.15 E-value=33 Score=16.57 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=5.8
Q ss_pred CHHHHHHHHHHhhh
Q psy10242 6 TEDQVNDFREAFSL 19 (77)
Q Consensus 6 ~~~~~~~~~~~f~~ 19 (77)
++.+...+..++..
T Consensus 17 ~~~E~~~i~~~l~~ 30 (106)
T cd07316 17 SEAEIQAARALMDQ 30 (106)
T ss_pred CHHHHHHHHHHHHH
Confidence 33444444444443
No 197
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=47.90 E-value=9.6 Score=21.16 Aligned_cols=46 Identities=22% Similarity=0.394 Sum_probs=31.7
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIRE 55 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 55 (77)
...++++|..+|++.=...+.+++..++...+...+...++.+...
T Consensus 48 r~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIRnr~KI~Avi~N 93 (179)
T PF03352_consen 48 REAFREAFAGFDPEKVAKMDEEDIERLMQDPGIIRNRRKIRAVINN 93 (179)
T ss_dssp HHHHHHHTGGGHHHHHHT--HHHHHHHTTSTTSS--HHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHcCCHHHHHHHhcCcchhhhHHHHHHHHHH
Confidence 4578899999999877788888888888876666666666554443
No 198
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=46.95 E-value=22 Score=15.86 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=15.9
Q ss_pred HHHhcCCCCCcceeHHHHHHHH
Q psy10242 52 MIREVDPEGKGIIDFPHFLELM 73 (77)
Q Consensus 52 ~~~~~~~~~~~~i~~~~f~~~~ 73 (77)
++..+...++|..+|+.+.++.
T Consensus 19 ~yhLYrsek~G~rdYEKY~~LA 40 (56)
T TIGR02736 19 IYHLYRSQKKGERDYEKYANLA 40 (56)
T ss_pred HHHhhhhhcccccCHHHHhhhh
Confidence 4555667788888888887653
No 199
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=46.79 E-value=36 Score=16.60 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=32.7
Q ss_pred CCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 23 DGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 23 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
-++|.|+.++...+-. .+.+++.+++++.... ..|....+-|.+++..
T Consensus 25 l~n~~it~E~y~~V~a---~~T~qdkmRkLld~v~--akG~~~k~~F~~iL~e 72 (85)
T cd08324 25 LKNDYFSTEDAEIVCA---CPTQPDKVRKILDLVQ--SKGEEVSEYFLYLLQQ 72 (85)
T ss_pred hccCCccHHHHHHHHh---CCCCHHHHHHHHHHHH--hcCchHHHHHHHHHHH
Confidence 4578999888654433 4567788888888853 3455667777777653
No 200
>KOG0843|consensus
Probab=46.01 E-value=55 Score=18.49 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHH
Q psy10242 3 SFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEM 52 (77)
Q Consensus 3 ~~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~ 52 (77)
+.++.+++..+...|.. ++|+...|-.++-+.++ ++.-.++-.
T Consensus 107 T~ft~~Ql~~LE~~F~~-----~~Yvvg~eR~~LA~~L~--LsetQVkvW 149 (197)
T KOG0843|consen 107 TAFTPEQLLKLEHAFEG-----NQYVVGAERKQLAQSLS--LSETQVKVW 149 (197)
T ss_pred cccCHHHHHHHHHHHhc-----CCeeechHHHHHHHHcC--CChhHhhhh
Confidence 35788899999999965 88999888888777665 444444433
No 201
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=45.91 E-value=43 Score=17.28 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=9.3
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHH
Q psy10242 31 KHLGIVMRSLGRNPSEAELEEMI 53 (77)
Q Consensus 31 ~el~~~l~~~~~~~~~~~~~~~~ 53 (77)
.+++.++..-+..++.++++.++
T Consensus 83 ~ElRsIla~e~~~~s~E~l~~Il 105 (114)
T COG1460 83 DELRSILAKERVMLSDEELDKIL 105 (114)
T ss_pred HHHHHHHHHccCCCCHHHHHHHH
Confidence 33444444433334444444333
No 202
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=45.68 E-value=33 Score=15.81 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=15.0
Q ss_pred ceeHHHHHHHHHHh----CCCCCHHHHHHHHHhc
Q psy10242 27 TITAKHLGIVMRSL----GRNPSEAELEEMIREV 56 (77)
Q Consensus 27 ~i~~~el~~~l~~~----~~~~~~~~~~~~~~~~ 56 (77)
-+-..+++.++..+ |...+.+-+..+|..|
T Consensus 39 dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 39 DLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 34455666666553 4444555556665543
No 203
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=44.86 E-value=35 Score=15.91 Aligned_cols=32 Identities=9% Similarity=0.238 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHH
Q psy10242 6 TEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRS 39 (77)
Q Consensus 6 ~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~ 39 (77)
+.++.......|.+.- ..|++..+|+..++..
T Consensus 11 s~e~~~~~~~ql~Q~~--~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 11 SAEEADGALIQLSQML--ASGKLRGEEINSLLEA 42 (75)
T ss_pred CHHHHHHHHHHHHHHH--HcCcccHHHHHHHHHH
Confidence 3444444444444322 3689999999998865
No 204
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=44.30 E-value=33 Score=15.38 Aligned_cols=16 Identities=31% Similarity=0.407 Sum_probs=6.9
Q ss_pred CCCHHHHHHHHHhcCC
Q psy10242 43 NPSEAELEEMIREVDP 58 (77)
Q Consensus 43 ~~~~~~~~~~~~~~~~ 58 (77)
+++.+++..-...+..
T Consensus 20 GLs~~ev~~r~~~~G~ 35 (69)
T PF00690_consen 20 GLSSEEVEERRKKYGP 35 (69)
T ss_dssp BBTHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHhccc
Confidence 3444444444444433
No 205
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=44.15 E-value=22 Score=18.70 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=14.6
Q ss_pred hhCCCCCCceeHHHHHHHHHHhC
Q psy10242 19 LFDKDGSGTITAKHLGIVMRSLG 41 (77)
Q Consensus 19 ~~d~~~~g~i~~~el~~~l~~~~ 41 (77)
-.+..|..+|+..+|+.++..+|
T Consensus 10 GINVGG~nki~MaeLr~~l~~~G 32 (137)
T PF08002_consen 10 GINVGGKNKIKMAELREALEDLG 32 (137)
T ss_dssp S-SBTTBS---HHHHHHHHHHCT
T ss_pred ceecCCCCcccHHHHHHHHHHcC
Confidence 34566667899999999998865
No 206
>PRK09389 (R)-citramalate synthase; Provisional
Probab=43.62 E-value=88 Score=20.31 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhcCC--CCCcceeHHHHHHHHHh
Q psy10242 31 KHLGIVMRSLGRNPSEAELEEMIREVDP--EGKGIIDFPHFLELMMK 75 (77)
Q Consensus 31 ~el~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~f~~~~~~ 75 (77)
.-+...++.+|..++.+++..++..+.. +....++-+++..++..
T Consensus 321 ~~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~el~~l~~~ 367 (488)
T PRK09389 321 AALKAALKEMGIEVSDDQLNEIVSRVKELGDRGKRVTDADLLAIAED 367 (488)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Confidence 4467777778888888877777776533 33446777777776643
No 207
>cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=43.50 E-value=39 Score=16.04 Aligned_cols=38 Identities=8% Similarity=0.097 Sum_probs=21.4
Q ss_pred hhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy10242 18 SLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIRE 55 (77)
Q Consensus 18 ~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 55 (77)
..+..+.+|+|+.+-+...-+--....+.+.+...+..
T Consensus 25 ~~~~~~~dG~Vpl~~i~~F~rmk~l~~d~~~I~~Al~~ 62 (77)
T cd08033 25 KHVRRNKEGYVPIKLIASFKKVKALTRDWRVVAAALRR 62 (77)
T ss_pred HHhccCCCCcEehHHHhcchHHHHHcCCHHHHHHHHHh
Confidence 44556778999977665544433333344555444443
No 208
>PRK03968 DNA primase large subunit; Validated
Probab=43.33 E-value=56 Score=20.61 Aligned_cols=35 Identities=29% Similarity=0.330 Sum_probs=23.2
Q ss_pred CCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy10242 21 DKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIRE 55 (77)
Q Consensus 21 d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 55 (77)
...+.+.++..++..+.+..+..+..+++..+...
T Consensus 115 ~~~~~~e~p~~d~~~l~~~~~~el~~e~~~~~~~~ 149 (399)
T PRK03968 115 KVVNAIEIPEKDRKILERVRGRELPPEELEDLLPE 149 (399)
T ss_pred cccccccccchhhhhhhhhcccccCHHHHHHHhhh
Confidence 34556677777777777777776777776655444
No 209
>PTZ00315 2'-phosphotransferase; Provisional
Probab=43.26 E-value=1e+02 Score=20.74 Aligned_cols=36 Identities=8% Similarity=0.056 Sum_probs=28.8
Q ss_pred CCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10242 21 DKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREV 56 (77)
Q Consensus 21 d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 56 (77)
..+.+|++..+++...++.-+..++.+.++.+...-
T Consensus 399 ~ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~n 434 (582)
T PTZ00315 399 PITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRDS 434 (582)
T ss_pred CcCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHcC
Confidence 357789999999999887766668888888887753
No 210
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=43.21 E-value=48 Score=17.03 Aligned_cols=42 Identities=14% Similarity=0.304 Sum_probs=31.9
Q ss_pred HhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q psy10242 16 AFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVD 57 (77)
Q Consensus 16 ~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 57 (77)
.|..+-.-++..++.+++..+|+..|.......+..++..+.
T Consensus 8 AYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~ 49 (112)
T PTZ00373 8 AYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 344444556667899999999999998888887777777763
No 211
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=42.81 E-value=30 Score=14.48 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=13.7
Q ss_pred eHHHHHHHHHHhCCCCCHHHH
Q psy10242 29 TAKHLGIVMRSLGRNPSEAEL 49 (77)
Q Consensus 29 ~~~el~~~l~~~~~~~~~~~~ 49 (77)
+.+++..+.+..|+.++..++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 556666666667777766654
No 212
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=42.75 E-value=17 Score=17.70 Aligned_cols=14 Identities=0% Similarity=0.266 Sum_probs=6.7
Q ss_pred CCHHHHHHHHHHhh
Q psy10242 5 LTEDQVNDFREAFS 18 (77)
Q Consensus 5 ~~~~~~~~~~~~f~ 18 (77)
+++++...+...+.
T Consensus 19 v~~~E~~~i~~~l~ 32 (111)
T cd07176 19 IDDAELQAIEALLR 32 (111)
T ss_pred CCHHHHHHHHHHHH
Confidence 34444455555544
No 213
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=42.47 E-value=25 Score=19.85 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=18.8
Q ss_pred hhCCCCCCceeHHHHHHHHHHh
Q psy10242 19 LFDKDGSGTITAKHLGIVMRSL 40 (77)
Q Consensus 19 ~~d~~~~g~i~~~el~~~l~~~ 40 (77)
-+|.+++|.++.+++..+....
T Consensus 58 ~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 58 GLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred hhhhcccCCCCHHHHHHHHHHH
Confidence 5789999999999988887754
No 214
>PF09127 Leuk-A4-hydro_C: Leukotriene A4 hydrolase, C-terminal; InterPro: IPR015211 This C-terminal domain is found in peptidases belonging to MEROPS peptidase family M1, particularly: aminopeptidase-1 of Caenorhabditis elegans, aminopeptidase O, aminopeptidase B and the bifunctional leukotriene A4 hydrolase/aminopeptidase. The domain adopts a structure consisting of two layers of parallel alpha-helices, five in the inner layer and four in the outer, arranged in an antiparallel manner, with perpendicular loops containing short helical segments on top. It is required for the formation of a deep cleft harbouring the catalytic Zn2+ site in leukotriene A4 hydrolase []. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0019370 leukotriene biosynthetic process; PDB: 3FUJ_A 3FU3_A 3FTX_A 3FTS_A 3B7R_L 2VJ8_A 3FTW_A 3FUF_A 3FU0_A 3CHO_A ....
Probab=41.49 E-value=56 Score=17.28 Aligned_cols=36 Identities=8% Similarity=0.310 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHH
Q psy10242 3 SFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRS 39 (77)
Q Consensus 3 ~~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~ 39 (77)
..+++..+..+.+.| .+...++..|-...++-+++.
T Consensus 47 ~~l~~~~l~~Ld~~y-~l~~s~NaEI~~rW~~l~i~~ 82 (143)
T PF09127_consen 47 KPLSPEKLQALDKVY-KLSNSKNAEIRFRWLRLAIKA 82 (143)
T ss_dssp CG-CHHHHHHHHHHH-CHCT-SSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHh-CCCCCCCHHHHHHHHHHHHhc
Confidence 346778888888888 667777788888888877775
No 215
>PF09808 SNAPc_SNAP43: Small nuclear RNA activating complex (SNAPc), subunit SNAP43; InterPro: IPR019188 Members of this family are part of the SNAPc complex required for the transcription of both RNA polymerase II and III small-nuclear RNA genes. They bind to the proximal sequence element (PSE), a non-TATA-box basal promoter element common to these 2 types of genes. Furthermore, they also recruit TBP and BRF2 to the U6 snRNA TATA box. SNAPc consists of at least four stably associated subunits, SNAP43, SNAP45, SNAP50, and SNAP190. None of the three small subunits can bind to the PSE on their own [].
Probab=41.10 E-value=47 Score=18.46 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=6.4
Q ss_pred ceeHHHHHHHHH
Q psy10242 63 IIDFPHFLELMM 74 (77)
Q Consensus 63 ~i~~~~f~~~~~ 74 (77)
.++|++|..+|.
T Consensus 18 ~~~F~~F~~~W~ 29 (194)
T PF09808_consen 18 SVRFEDFKRLWR 29 (194)
T ss_pred CCCHHHHHHHHH
Confidence 455555555553
No 216
>KOG4154|consensus
Probab=40.10 E-value=39 Score=18.06 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=19.3
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHHhC
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSLG 41 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~ 41 (77)
...+.++..-||...+|+....+|..-+..+.
T Consensus 139 vkdlkkilddw~esc~gc~ek~d~ikki~el~ 170 (178)
T KOG4154|consen 139 VKDLKKILDDWDESCDGCAEKGDFIKKIEELK 170 (178)
T ss_pred HHHHHHHHhhhhhhcccHhhhhhHHHHHHHhC
Confidence 34555666666666666666666666555543
No 217
>PF04077 DsrH: DsrH like protein; InterPro: IPR007215 The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulphur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulphide moiety, delivered by the cysteine desulphurase IscS to TusA, then to TusBCD. The activated sulphur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulphur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulphur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulphur flux, such as oxidation from sulphide to molecular sulphur to sulphate [].; GO: 0002143 tRNA wobble position uridine thiolation, 0005737 cytoplasm; PDB: 2HYB_O 2HY5_C 1X9A_A 1RHX_A 2D1P_C.
Probab=39.65 E-value=30 Score=16.66 Aligned_cols=14 Identities=36% Similarity=0.683 Sum_probs=10.4
Q ss_pred cceeHHHHHHHHHh
Q psy10242 62 GIIDFPHFLELMMK 75 (77)
Q Consensus 62 ~~i~~~~f~~~~~~ 75 (77)
..|+|.+|+.+..+
T Consensus 70 ~~Idy~~fV~Lt~~ 83 (88)
T PF04077_consen 70 KLIDYDGFVELTEQ 83 (88)
T ss_dssp EEE-HHHHHHHHHH
T ss_pred eEeCHHHHHHHHHH
Confidence 46899999998754
No 218
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=39.35 E-value=36 Score=16.12 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=13.1
Q ss_pred CCCCcceeHHHHHHHHH
Q psy10242 58 PEGKGIIDFPHFLELMM 74 (77)
Q Consensus 58 ~~~~~~i~~~~f~~~~~ 74 (77)
.+..|.|++..|++.+.
T Consensus 13 ~n~~G~iTl~gfLa~W~ 29 (76)
T PF08355_consen 13 TNEKGWITLQGFLAQWS 29 (76)
T ss_pred EcCCCcCcHHHHHHHHH
Confidence 46788899998887753
No 219
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=39.04 E-value=51 Score=18.01 Aligned_cols=19 Identities=26% Similarity=0.635 Sum_probs=14.5
Q ss_pred CCCCcceeHHHHHHHHHhh
Q psy10242 58 PEGKGIIDFPHFLELMMKK 76 (77)
Q Consensus 58 ~~~~~~i~~~~f~~~~~~~ 76 (77)
.+.++.|++..|..+++.+
T Consensus 94 ~~~n~~i~~~~ff~~lQ~~ 112 (175)
T PF04876_consen 94 DSTNGLIDIGKFFDILQPK 112 (175)
T ss_pred CCcccceeHHHHHHHHHHH
Confidence 3456779999999988764
No 220
>KOG0662|consensus
Probab=38.83 E-value=34 Score=19.57 Aligned_cols=60 Identities=18% Similarity=0.269 Sum_probs=32.0
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHH--HhcCCCCCcceeHHHH
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMI--REVDPEGKGIIDFPHF 69 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~f 69 (77)
...+++.|..++.+-+-.+..+-+-++++.+++-.+...+..-+ ...-.+.+|.+-..+|
T Consensus 84 dqdlkkyfdslng~~d~~~~rsfmlqllrgl~fchshnvlhrdlkpqnllin~ngelkladf 145 (292)
T KOG0662|consen 84 DQDLKKYFDSLNGDLDPEIVRSFMLQLLRGLGFCHSHNVLHRDLKPQNLLINRNGELKLADF 145 (292)
T ss_pred hHHHHHHHHhcCCcCCHHHHHHHHHHHHhhhhhhhhhhhhhccCCcceEEeccCCcEEeccc
Confidence 34666777766555555555555666666666555544433221 1223455666655544
No 221
>PF04081 DNA_pol_delta_4: DNA polymerase delta, subunit 4 ; InterPro: IPR007218 DNA polymerase is responsible for effective DNA replication. The function of the delta subunit 4 of DNA polymerase is not yet known.; GO: 0006260 DNA replication, 0005634 nucleus
Probab=38.52 E-value=63 Score=16.99 Aligned_cols=55 Identities=18% Similarity=0.287 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHhhhhCCCCC-C-ceeHHHHHHHHHHh--CCCCCHHHHHHHHHhcCCC
Q psy10242 4 FLTEDQVNDFREAFSLFDKDGS-G-TITAKHLGIVMRSL--GRNPSEAELEEMIREVDPE 59 (77)
Q Consensus 4 ~~~~~~~~~~~~~f~~~d~~~~-g-~i~~~el~~~l~~~--~~~~~~~~~~~~~~~~~~~ 59 (77)
.+..+......++.+.||.+.. | ++...-+..+-+.. |..++ .++..++..-..+
T Consensus 55 ~vh~e~~~~~e~~Lr~FDl~~~yGPC~GitRl~RW~RA~~lgL~PP-~ev~~vL~~~~~~ 113 (124)
T PF04081_consen 55 RVHQEDLSQHEKILRQFDLSSQYGPCIGITRLERWERAKRLGLNPP-IEVLAVLLLKEGD 113 (124)
T ss_pred CcccchhhHHHHHHHHhccccccCCccCchHHHHHHHHHHcCCCCC-HHHHHHHHhccCC
Confidence 3445566778888999998764 4 77777777777764 55544 4555565443333
No 222
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=38.24 E-value=82 Score=18.28 Aligned_cols=46 Identities=13% Similarity=0.212 Sum_probs=31.3
Q ss_pred eHHHHHHHHHH----hCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 29 TAKHLGIVMRS----LGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 29 ~~~el~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
+.++++.++.. .+..++..+++.+...+..=.+-.+++.+|...+.
T Consensus 173 t~~eI~~IV~~~~~~~~i~ls~~q~~~i~~l~~~~~~~~~~~~~~k~ql~ 222 (225)
T PF06207_consen 173 TDEEIRNIVNNVLNNYNINLSDEQIQQIVNLMKKIQNLNIDWKQVKEQLN 222 (225)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 67777766655 46678888888776666544444577788877664
No 223
>PF06784 UPF0240: Uncharacterised protein family (UPF0240); InterPro: IPR009622 This is a group of proteins of unknown function.
Probab=38.22 E-value=74 Score=17.72 Aligned_cols=42 Identities=14% Similarity=0.308 Sum_probs=28.5
Q ss_pred hhhhCCC--CCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCC
Q psy10242 17 FSLFDKD--GSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDP 58 (77)
Q Consensus 17 f~~~d~~--~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~ 58 (77)
|..+++. ..|+++..+...+|...........++.+...|..
T Consensus 105 fg~~ep~~vPkGkltl~qal~lL~~Hq~~P~~WtaekIA~eY~L 148 (179)
T PF06784_consen 105 FGFYEPEKVPKGKLTLRQALELLNNHQLDPETWTAEKIAQEYKL 148 (179)
T ss_pred ccccCcccCCCCceeHHHHHHHHHHhccCccccCHHHHHHHhCC
Confidence 4455554 36999999999999887655555556666666643
No 224
>PRK13510 sulfur transfer complex subunit TusB; Provisional
Probab=37.57 E-value=41 Score=16.51 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=12.4
Q ss_pred CCcceeHHHHHHHHHh
Q psy10242 60 GKGIIDFPHFLELMMK 75 (77)
Q Consensus 60 ~~~~i~~~~f~~~~~~ 75 (77)
+-..|+|++|+.+..+
T Consensus 73 ~i~~IdY~~FV~Lt~~ 88 (95)
T PRK13510 73 SIILISYTDFVRLTVK 88 (95)
T ss_pred CceEECHHHHHHHHHh
Confidence 3447899999998754
No 225
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=37.12 E-value=60 Score=16.38 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=6.8
Q ss_pred ceeHHHHHHHHHh
Q psy10242 63 IIDFPHFLELMMK 75 (77)
Q Consensus 63 ~i~~~~f~~~~~~ 75 (77)
.++|++|...+++
T Consensus 98 G~s~~~~r~~ir~ 110 (118)
T PF09312_consen 98 GISYEEYREQIRK 110 (118)
T ss_dssp T--HHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3677777666554
No 226
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=37.04 E-value=32 Score=13.27 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=12.1
Q ss_pred ceeHHHHHHHHHHhCCCC
Q psy10242 27 TITAKHLGIVMRSLGRNP 44 (77)
Q Consensus 27 ~i~~~el~~~l~~~~~~~ 44 (77)
.++..+++..++..|.+.
T Consensus 3 ~l~~~~Lk~~l~~~gl~~ 20 (35)
T smart00513 3 KLKVSELKDELKKRGLST 20 (35)
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 456677777777766554
No 227
>PRK08181 transposase; Validated
Probab=36.67 E-value=93 Score=18.43 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=28.2
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 25 SGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 25 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
++.|+.+.+...++.+..+--.+.+....... ..+.++|.+|+..+.
T Consensus 4 ~~~~~~~~l~~~l~~LkL~~~~~~~~~~~~~a---~~~~~~~~e~L~~ll 50 (269)
T PRK08181 4 TNVIDEARLGLLLNELRLPTIKTLWPQFAEQA---DKEGWPAARFLAAIA 50 (269)
T ss_pred CCcccHHHHHHHHHHcCchHHHHHHHHHHHHH---hhcCCCHHHHHHHHH
Confidence 45677777887888765543333333333332 334688888887763
No 228
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=36.54 E-value=52 Score=15.71 Aligned_cols=34 Identities=12% Similarity=0.303 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHH
Q psy10242 3 SFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRS 39 (77)
Q Consensus 3 ~~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~ 39 (77)
..++.+++..++++|+.+=..+ .+.++-..-+..
T Consensus 26 ~Gfs~~~i~~l~~ayr~l~~~~---~~~~~a~~~l~~ 59 (83)
T PF13720_consen 26 RGFSKEEISALRRAYRILFRSG---LTLEEALEELEE 59 (83)
T ss_dssp TTS-HHHHHHHHHHHHHHHTSS---S-HHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHH
Confidence 3678899999999999754322 244444444444
No 229
>PF03963 FlgD: Flagellar hook capping protein - N-terminal region; InterPro: IPR005648 FlgD is known to be absolutely required for hook assembly, yet it has not been detected in the mature flagellum []. It appears to act as a hook-capping protein to enable assembly of hook protein subunits [].
Probab=36.37 E-value=45 Score=15.97 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=11.5
Q ss_pred CCCcceeHHHHHHHHHh
Q psy10242 59 EGKGIIDFPHFLELMMK 75 (77)
Q Consensus 59 ~~~~~i~~~~f~~~~~~ 75 (77)
...+.++.++|+.++..
T Consensus 26 ~~~~~l~~d~FLkLLva 42 (81)
T PF03963_consen 26 SSNSSLDQDDFLKLLVA 42 (81)
T ss_pred CCcccccHHHHHHHHHH
Confidence 34556778888887754
No 230
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=35.33 E-value=36 Score=13.26 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=10.4
Q ss_pred eeHHHHHHHHHHhCCCC
Q psy10242 28 ITAKHLGIVMRSLGRNP 44 (77)
Q Consensus 28 i~~~el~~~l~~~~~~~ 44 (77)
++..+++..++..|.+.
T Consensus 4 l~v~eLk~~l~~~gL~~ 20 (35)
T PF02037_consen 4 LTVAELKEELKERGLST 20 (35)
T ss_dssp SHHHHHHHHHHHTTS-S
T ss_pred CcHHHHHHHHHHCCCCC
Confidence 45667777777766544
No 231
>PLN02208 glycosyltransferase family protein
Probab=34.91 E-value=1.2e+02 Score=19.32 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=17.2
Q ss_pred hhCCCCCCceeHHHHHHHHHHhC
Q psy10242 19 LFDKDGSGTITAKHLGIVMRSLG 41 (77)
Q Consensus 19 ~~d~~~~g~i~~~el~~~l~~~~ 41 (77)
.++.+.+|.++.+++..+++.+.
T Consensus 377 ~~~~~~~~~~~~~~l~~ai~~~m 399 (442)
T PLN02208 377 EVSREKTGWFSKESLSNAIKSVM 399 (442)
T ss_pred EeccccCCcCcHHHHHHHHHHHh
Confidence 44444357899999999999864
No 232
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=34.86 E-value=47 Score=17.81 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhhhhCCCCCCce
Q psy10242 7 EDQVNDFREAFSLFDKDGSGTI 28 (77)
Q Consensus 7 ~~~~~~~~~~f~~~d~~~~g~i 28 (77)
..++.++..+|..++.+..|.-
T Consensus 46 ~~qi~rLe~if~~lg~~~~~~~ 67 (147)
T cd07909 46 EGQVERLEQIFESLGEKPEGKK 67 (147)
T ss_pred HHHHHHHHHHHHHcCCCCccCc
Confidence 4578899999999988766643
No 233
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=34.72 E-value=85 Score=17.38 Aligned_cols=30 Identities=17% Similarity=0.239 Sum_probs=12.8
Q ss_pred CceeHHHHHHHHHHh--CCCCCHHHHHHHHHh
Q psy10242 26 GTITAKHLGIVMRSL--GRNPSEAELEEMIRE 55 (77)
Q Consensus 26 g~i~~~el~~~l~~~--~~~~~~~~~~~~~~~ 55 (77)
.+++.++|...++.. +..++.+.+..++..
T Consensus 148 ~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~ 179 (185)
T cd00171 148 KKMTLEDFIKNLRGINDGEDFPREFLKELYDS 179 (185)
T ss_pred CCCCHHHHHHHHhcccCCCCCCHHHHHHHHHH
Confidence 344444444444433 223444444444443
No 234
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=34.30 E-value=63 Score=17.61 Aligned_cols=8 Identities=13% Similarity=0.488 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q psy10242 10 VNDFREAF 17 (77)
Q Consensus 10 ~~~~~~~f 17 (77)
.+++++..
T Consensus 7 L~~L~~~L 14 (181)
T PF08006_consen 7 LNELEKYL 14 (181)
T ss_pred HHHHHHHH
Confidence 33444333
No 235
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=34.15 E-value=70 Score=16.28 Aligned_cols=51 Identities=18% Similarity=0.331 Sum_probs=35.2
Q ss_pred hhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHH
Q psy10242 17 FSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLEL 72 (77)
Q Consensus 17 f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~ 72 (77)
|..+-..++..++.+++..+|+..|.......+..+...+.. .+..+.+..
T Consensus 7 ylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa~ 57 (109)
T cd05833 7 YLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIAA 57 (109)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHH
Confidence 334444566689999999999999988877777777766632 344555543
No 236
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=34.03 E-value=38 Score=15.05 Aligned_cols=13 Identities=8% Similarity=0.107 Sum_probs=8.3
Q ss_pred eeHHHHHHHHHhh
Q psy10242 64 IDFPHFLELMMKK 76 (77)
Q Consensus 64 i~~~~f~~~~~~~ 76 (77)
.+|.||..++.+.
T Consensus 21 M~~~eF~~CW~nF 33 (55)
T PF05240_consen 21 MTYSEFQYCWENF 33 (55)
T ss_dssp --HHHHHHHHHHC
T ss_pred cCcHHHHHHHHHH
Confidence 4788888887654
No 237
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=33.35 E-value=1e+02 Score=17.83 Aligned_cols=35 Identities=20% Similarity=0.109 Sum_probs=28.5
Q ss_pred CCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10242 22 KDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREV 56 (77)
Q Consensus 22 ~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 56 (77)
.+.+|+.+.+++...++..+..++.+.+..+...-
T Consensus 54 lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d 88 (211)
T COG1859 54 LDEEGWADIDELLEGLRKAGRWLTRELLLAVVATD 88 (211)
T ss_pred eccccchhHHHHHHHHHhhccCCCHHHHHHHHhcC
Confidence 47789999999999999988888888777666553
No 238
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=33.23 E-value=20 Score=17.01 Aligned_cols=18 Identities=11% Similarity=0.178 Sum_probs=7.7
Q ss_pred CCCCCCceeHHHHHHHHH
Q psy10242 21 DKDGSGTITAKHLGIVMR 38 (77)
Q Consensus 21 d~~~~g~i~~~el~~~l~ 38 (77)
..+..+.++..+.+..++
T Consensus 47 ~~n~~~~lt~~~~~~~i~ 64 (86)
T PF04433_consen 47 RKNPNKYLTKTDARKLIK 64 (86)
T ss_dssp HHHTTS---HHHHHHHTT
T ss_pred HHCCCCcccHHHHHHHcc
Confidence 344556666665554444
No 239
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=33.18 E-value=64 Score=15.50 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=12.4
Q ss_pred HHHHHHHHhCCCCCHHHHHHH
Q psy10242 32 HLGIVMRSLGRNPSEAELEEM 52 (77)
Q Consensus 32 el~~~l~~~~~~~~~~~~~~~ 52 (77)
|+-.+|+.+|..+++++...+
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL 41 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFL 41 (78)
T ss_dssp HHHHHHHHTT----HHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHH
Confidence 466788889999998886543
No 240
>KOG2116|consensus
Probab=33.11 E-value=68 Score=21.94 Aligned_cols=38 Identities=24% Similarity=0.439 Sum_probs=30.5
Q ss_pred CCCCCceeHHH-HHHHHHHhCCCCCHHHHHHHHHhcCCC
Q psy10242 22 KDGSGTITAKH-LGIVMRSLGRNPSEAELEEMIREVDPE 59 (77)
Q Consensus 22 ~~~~g~i~~~e-l~~~l~~~~~~~~~~~~~~~~~~~~~~ 59 (77)
.|-||.|+..+ |.+++-.+|...++..+..+|.....|
T Consensus 535 SDIDGTITKSDvLGh~lp~iGkDWTh~GVAkLyt~Ik~N 573 (738)
T KOG2116|consen 535 SDIDGTITKSDVLGHVLPMIGKDWTHTGVAKLYTKIKEN 573 (738)
T ss_pred ecCCCceEhhhhhhhhhhhhcCcchhhhHHHHHHHHHhC
Confidence 36689999877 778888889889999999998876443
No 241
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=32.96 E-value=1.2e+02 Score=19.96 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHh
Q psy10242 4 FLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSL 40 (77)
Q Consensus 4 ~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~ 40 (77)
.+++.+...+.-+|+..|.++==-++.++|+.+|.-+
T Consensus 121 ~LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v 157 (502)
T PF05872_consen 121 ELNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYV 157 (502)
T ss_pred ccchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHH
Confidence 3567778888999999999887889999999998765
No 242
>cd08028 LARP_3 La RNA-binding domain of La-related protein 3. This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).
Probab=32.84 E-value=65 Score=15.50 Aligned_cols=37 Identities=8% Similarity=0.114 Sum_probs=20.1
Q ss_pred hhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10242 19 LFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREV 56 (77)
Q Consensus 19 ~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 56 (77)
.++.+ +|+|+.+-+...-+--....+...+...+...
T Consensus 30 ~m~~~-~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S 66 (82)
T cd08028 30 QIKED-DGWVPMEVMLKFNRLKSLSSDPEVIAKALKKS 66 (82)
T ss_pred HHhcc-CCCEEhHHHhCChhHHHhcCCHHHHHHHHHhC
Confidence 34444 89999877665544333333445555554443
No 243
>KOG1265|consensus
Probab=32.81 E-value=1.9e+02 Score=20.96 Aligned_cols=40 Identities=18% Similarity=0.353 Sum_probs=28.6
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 33 LGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 33 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
|..++..+. .+.+++.+|..+..++.-.++.++++.++..
T Consensus 210 f~~~l~klc---pR~eie~iF~ki~~~~kpylT~~ql~dfln~ 249 (1189)
T KOG1265|consen 210 FYRLLNKLC---PRPEIEEIFRKISGKKKPYLTKEQLVDFLNK 249 (1189)
T ss_pred HHHHHHhcC---CchhHHHHHHHhccCCCccccHHHHHHHHhh
Confidence 444444432 3357888999998887778999999988854
No 244
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=32.74 E-value=13 Score=14.33 Aligned_cols=14 Identities=36% Similarity=0.321 Sum_probs=7.6
Q ss_pred hhhCCCCCCceeHH
Q psy10242 18 SLFDKDGSGTITAK 31 (77)
Q Consensus 18 ~~~d~~~~g~i~~~ 31 (77)
.+=|.+++..|+.+
T Consensus 6 ~qEDTDgn~qITIe 19 (30)
T PF07492_consen 6 EQEDTDGNFQITIE 19 (30)
T ss_pred hccccCCCcEEEEe
Confidence 34456666666544
No 245
>PTZ00056 glutathione peroxidase; Provisional
Probab=32.65 E-value=95 Score=17.32 Aligned_cols=33 Identities=12% Similarity=0.113 Sum_probs=20.3
Q ss_pred CceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCC
Q psy10242 26 GTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGK 61 (77)
Q Consensus 26 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 61 (77)
|.++.+++...+..+ +.....+++|..++.-..
T Consensus 163 g~~~~~~l~~~I~~l---l~~~~~~~~~~~~~~~~~ 195 (199)
T PTZ00056 163 PRTEPLELEKKIAEL---LGVKDYQELFKNYDKLHP 195 (199)
T ss_pred CCCCHHHHHHHHHHH---HHHHHHHHHHHhhhhcCc
Confidence 445566666666655 345566677777765443
No 246
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=32.45 E-value=51 Score=14.18 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=21.3
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC
Q psy10242 25 SGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPE 59 (77)
Q Consensus 25 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~ 59 (77)
.|.++..+++..+. .+..-+-.+++.+|..
T Consensus 8 ~~~itv~~~rd~lg-----~sRK~ai~lLE~lD~~ 37 (50)
T PF09107_consen 8 NGEITVAEFRDLLG-----LSRKYAIPLLEYLDRE 37 (50)
T ss_dssp TSSBEHHHHHHHHT-----S-HHHHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHHC-----ccHHHHHHHHHHHhcc
Confidence 78999999998774 4666666677776543
No 247
>PF08839 CDT1: DNA replication factor CDT1 like; InterPro: IPR014939 CDT1 is a component of the replication licensing system and promotes the loading of the mini-chromosome maintenance complex onto chromatin. Geminin is an inhibitor of CDT1 and prevents inappropriate re-initiation of replication on an already fired origin. This region of CDT1 binds to Geminin []. ; PDB: 2WVR_C 2ZXX_F.
Probab=32.40 E-value=88 Score=16.91 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhhhCC------CCCCceeHHHHHHHHHHh-CCCCCHHHHHHHHHhc
Q psy10242 8 DQVNDFREAFSLFDK------DGSGTITAKHLGIVMRSL-GRNPSEAELEEMIREV 56 (77)
Q Consensus 8 ~~~~~~~~~f~~~d~------~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~ 56 (77)
...+.+.++|+.+|. +.+..++...++..++.+ +..++...+.++...+
T Consensus 3 ~~y~~L~~~F~~ldtv~~~l~~R~~~~tf~~i~~~Ve~~~kr~F~~~~LaQI~~i~ 58 (163)
T PF08839_consen 3 EKYEFLAELFRALDTVVSMLRNRKETPTFQKIKPSVENMTKRRFTEEHLAQIKYIY 58 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT---BHHHHHHHHHHHHSS---HHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCCcCHHHHHHHHHhC
Confidence 455677777877773 334468888888888875 5667888777776554
No 248
>PF05901 Excalibur: Excalibur calcium-binding domain; InterPro: IPR008613 Extracellular Ca2+-dependent nuclease YokF from Bacillus subtilis and several other surface-exposed proteins from diverse bacteria are encoded in the genomes in two paralogous forms that differ by a ~45 amino acid fragment, which comprises a novel conserved domain. Sequence analysis of this domain revealed a conserved DxDxDGxxCE motif, which is strikingly similar to the Ca2+-binding loop of the calmodulin-like EF-hand domains, suggesting an evolutionary relationship between them. Functions of many of the other proteins in which the novel domain, named Excalibur (extracellular calcium-binding region), is found, as well as a structural model of its conserved motif are consistent with the notion that the Excalibur domain binds calcium. This domain is but one more example of the diversity of structural contexts surrounding the EF-hand-like calcium-binding loop in bacteria. This loop is thus more widespread than hitherto recognised and the evolution of EF-hand-like domains is probably more complex than previously appreciated [].
Probab=32.31 E-value=26 Score=13.97 Aligned_cols=9 Identities=44% Similarity=0.929 Sum_probs=6.3
Q ss_pred hhCCCCCCc
Q psy10242 19 LFDKDGSGT 27 (77)
Q Consensus 19 ~~d~~~~g~ 27 (77)
.+|.+++|.
T Consensus 26 ~LDrD~DGi 34 (37)
T PF05901_consen 26 KLDRDGDGI 34 (37)
T ss_pred cccCCCCCC
Confidence 467777774
No 249
>PF10891 DUF2719: Protein of unknown function (DUF2719); InterPro: IPR020122 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf56; it is a family of uncharacterised viral proteins.
Probab=32.20 E-value=47 Score=15.96 Aligned_cols=12 Identities=25% Similarity=0.495 Sum_probs=9.2
Q ss_pred CcceeHHHHHHH
Q psy10242 61 KGIIDFPHFLEL 72 (77)
Q Consensus 61 ~~~i~~~~f~~~ 72 (77)
.+.|+|++|+.+
T Consensus 33 PmSIS~eeY~~L 44 (81)
T PF10891_consen 33 PMSISFEEYIRL 44 (81)
T ss_pred ccEeeHHHHHHH
Confidence 457889988765
No 250
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=31.83 E-value=41 Score=12.91 Aligned_cols=11 Identities=27% Similarity=0.404 Sum_probs=4.1
Q ss_pred CCCCHHHHHHH
Q psy10242 42 RNPSEAELEEM 52 (77)
Q Consensus 42 ~~~~~~~~~~~ 52 (77)
.+++.++++..
T Consensus 15 ~Gls~eeir~F 25 (30)
T PF08671_consen 15 SGLSKEEIREF 25 (30)
T ss_dssp TT--HHHHHHH
T ss_pred cCCCHHHHHHH
Confidence 34455554443
No 251
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=31.66 E-value=50 Score=13.87 Aligned_cols=31 Identities=29% Similarity=0.323 Sum_probs=19.4
Q ss_pred CCcee-HHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy10242 25 SGTIT-AKHLGIVMRSLGRNPSEAELEEMIRE 55 (77)
Q Consensus 25 ~g~i~-~~el~~~l~~~~~~~~~~~~~~~~~~ 55 (77)
.|.|+ .+.+-..+...|..+++..++.++..
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 46665 34444445556777888877776654
No 252
>cd08809 CARD_CARD9 Caspase activation and recruitment domain of CARD9-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD9. CARD9 is a central regulator of innate immunity and is highly expressed in dendritic cells and macrophages. Together with BCL10 (B-cell lymphoma 10) and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), it forms the M-CBM signalosome (the CBM complex in myeloid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. CARD9 associates with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating wi
Probab=31.58 E-value=72 Score=15.61 Aligned_cols=48 Identities=10% Similarity=0.187 Sum_probs=30.8
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 25 SGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 25 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
.|.|+..+...++.....+.+...+-.++..... .|.=.|..|+..+.
T Consensus 28 ~~Vl~~~deEeI~~~~~~~~~~~kvg~LLDIL~~--rG~~~f~aFLeSLE 75 (86)
T cd08809 28 CKVLNSDDEEQVLNDPSLVIRKRKVGVLLDILQR--TGLKGYEAFLESLE 75 (86)
T ss_pred hCCCChhhHHHHHcCcccchHHHHHHHHHHHHHh--cCchHHHHHHHHHH
Confidence 3667777777777765555566666666666643 34556777776664
No 253
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=30.65 E-value=1.4e+02 Score=21.16 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=29.6
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCC
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNP 44 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~ 44 (77)
..+++.+++.+++-++++-+++-++.+-+.+|.+.
T Consensus 713 ERRiQrlykvleP~gdsrpDW~Iiq~vA~~lG~~w 747 (978)
T COG3383 713 ERRIQRLYKVLEPLGDSRPDWEIIQEVANALGAGW 747 (978)
T ss_pred HHHHHHHHHHhccccCCCccHHHHHHHHHHhcCCC
Confidence 45888889999999999999999998888887554
No 254
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=30.43 E-value=81 Score=20.85 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=27.0
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHH
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEA 47 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~ 47 (77)
......+|.+.-+.+..-++..++..++..++.....+
T Consensus 484 l~~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~ 521 (612)
T COG5069 484 LRSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKE 521 (612)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCc
Confidence 33455667776666666789999999999887655443
No 255
>KOG3442|consensus
Probab=30.27 E-value=92 Score=16.46 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=25.2
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHH----HhcCCCCCc
Q psy10242 25 SGTITAKHLGIVMRSLGRNPSEAELEEMI----REVDPEGKG 62 (77)
Q Consensus 25 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~ 62 (77)
.|.|+..|-+++|... .+++.+++..-| ..-|+...|
T Consensus 53 ~~~iTlqEa~qILnV~-~~ln~eei~k~yehLFevNdkskGG 93 (132)
T KOG3442|consen 53 NGKITLQEAQQILNVK-EPLNREEIEKRYEHLFEVNDKSKGG 93 (132)
T ss_pred cccccHHHHhhHhCCC-CCCCHHHHHHHHHHHHhccCcccCc
Confidence 4779999988888763 477888876644 444555444
No 256
>KOG0488|consensus
Probab=30.22 E-value=1.3e+02 Score=18.31 Aligned_cols=44 Identities=14% Similarity=0.247 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy10242 4 FLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIR 54 (77)
Q Consensus 4 ~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~ 54 (77)
-|++.++..|.+.|.+ -.||+..|-..+-..++ +++..|.-.|.
T Consensus 178 aFT~~Ql~~LEkrF~~-----QKYLS~~DR~~LA~~Lg--LTdaQVKtWfQ 221 (309)
T KOG0488|consen 178 AFSDHQLFELEKRFEK-----QKYLSVADRIELAASLG--LTDAQVKTWFQ 221 (309)
T ss_pred hhhHHHHHHHHHHHHH-----hhcccHHHHHHHHHHcC--CchhhHHHHHh
Confidence 4778889999999987 67888888766666654 55555544443
No 257
>PF14754 IFR3_antag: Papain-like auto-proteinase
Probab=29.80 E-value=11 Score=20.64 Aligned_cols=37 Identities=14% Similarity=0.269 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCC
Q psy10242 8 DQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNP 44 (77)
Q Consensus 8 ~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~ 44 (77)
....-++-.+.++....+|.++...++-++..+|..+
T Consensus 173 rreaglrlyynhyreqrtgwlsktglrlwlgdlglgi 209 (249)
T PF14754_consen 173 RREAGLRLYYNHYREQRTGWLSKTGLRLWLGDLGLGI 209 (249)
T ss_pred hhhhhhhhhhhhhhHhhcccccccchheeeccccccc
Confidence 3455677778888888899999999999888876554
No 258
>PF05604 DUF776: Protein of unknown function (DUF776); InterPro: IPR008494 This family consists of several highly related Mus musculus and Homo sapiens proteins of unknown function.
Probab=29.70 E-value=65 Score=17.90 Aligned_cols=29 Identities=24% Similarity=0.428 Sum_probs=21.2
Q ss_pred CCCCCCHHHHHHHHHHhhhhCCCCCCcee
Q psy10242 1 MDSFLTEDQVNDFREAFSLFDKDGSGTIT 29 (77)
Q Consensus 1 m~~~~~~~~~~~~~~~f~~~d~~~~g~i~ 29 (77)
|...-.+.+.+-|+-+|+.+-.|-.|.+.
T Consensus 1 m~~~~kd~EEesLQTAFKKLRVDA~~~~a 29 (178)
T PF05604_consen 1 MESEAKDGEEESLQTAFKKLRVDAEGSIA 29 (178)
T ss_pred CCcccccchHHHHHHHHHHheeccccCee
Confidence 44445567788999999998777777654
No 259
>KOG3077|consensus
Probab=29.64 E-value=1.3e+02 Score=18.00 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=38.6
Q ss_pred HHHHHHHhhhh-CCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHH
Q psy10242 10 VNDFREAFSLF-DKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELM 73 (77)
Q Consensus 10 ~~~~~~~f~~~-d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~ 73 (77)
...+.++|..+ |++.+..|..+.+.+..+.+|..+..-.+--+-=.+....-+..+-.+|+.-+
T Consensus 63 ~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~ 127 (260)
T KOG3077|consen 63 EKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGM 127 (260)
T ss_pred HHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHH
Confidence 45667777764 77766788888899999988865533222211112333344556666666533
No 260
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=29.37 E-value=78 Score=15.31 Aligned_cols=45 Identities=7% Similarity=0.084 Sum_probs=25.7
Q ss_pred eHHHHHHHHHHh-CCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHH
Q psy10242 29 TAKHLGIVMRSL-GRNPSEAELEEMIREVDPEGKGIIDFPHFLELM 73 (77)
Q Consensus 29 ~~~el~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~ 73 (77)
+..--..+|..- |-..+.+..+.+-..++...+..|+|++++.+.
T Consensus 30 Pl~~Q~~WLskeRgG~IP~~V~~sl~kL~~La~~N~v~feeLc~YA 75 (82)
T PF11020_consen 30 PLQFQATWLSKERGGQIPEKVMDSLSKLYKLAKENNVSFEELCVYA 75 (82)
T ss_pred chHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 333334555543 444555554445445554555579999988764
No 261
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=29.20 E-value=82 Score=15.51 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=32.0
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 25 SGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 25 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
.|.++.++...+-...+..-+...++.+..... .+ .=-|..|+.++..
T Consensus 31 ~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~~aF~~Fl~aLre 78 (88)
T cd08819 31 QGLLTEEDRNRIEAATENHGNESGARELLKRIV-QK--EGWFSKFLQALRE 78 (88)
T ss_pred cCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--CcHHHHHHHHHHH
Confidence 366776666555554445556778888888887 43 3458888888753
No 262
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=29.18 E-value=46 Score=12.62 Aligned_cols=24 Identities=13% Similarity=0.344 Sum_probs=14.8
Q ss_pred HHHHHHHHhhhhCCCCCCceeHHHHHHHHH
Q psy10242 9 QVNDFREAFSLFDKDGSGTITAKHLGIVMR 38 (77)
Q Consensus 9 ~~~~~~~~f~~~d~~~~g~i~~~el~~~l~ 38 (77)
.+..+...+. .|.|+.+||...-.
T Consensus 4 ~L~~L~~l~~------~G~IseeEy~~~k~ 27 (31)
T PF09851_consen 4 RLEKLKELYD------KGEISEEEYEQKKA 27 (31)
T ss_pred HHHHHHHHHH------cCCCCHHHHHHHHH
Confidence 4445555553 38888888776544
No 263
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=29.14 E-value=55 Score=16.82 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=13.7
Q ss_pred CCCCceeHHHHHHHHHHh
Q psy10242 23 DGSGTITAKHLGIVMRSL 40 (77)
Q Consensus 23 ~~~g~i~~~el~~~l~~~ 40 (77)
|-+|.++.+++.+++..+
T Consensus 6 DtSGSis~~~l~~fl~ev 23 (126)
T PF09967_consen 6 DTSGSISDEELRRFLSEV 23 (126)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 346889988888888653
No 264
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=28.99 E-value=91 Score=15.98 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=7.9
Q ss_pred cCCCCCcceeHHHHHHHH
Q psy10242 56 VDPEGKGIIDFPHFLELM 73 (77)
Q Consensus 56 ~~~~~~~~i~~~~f~~~~ 73 (77)
++.++.-.+-+++|+..+
T Consensus 99 Yde~~AWP~liDeFVe~~ 116 (117)
T PF03556_consen 99 YDEEGAWPSLIDEFVEWL 116 (117)
T ss_dssp --TTSSS-HHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHHHh
Confidence 344444445566666554
No 265
>TIGR03296 M6dom_TIGR03296 M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than Pfam model pfam05547.
Probab=28.60 E-value=27 Score=20.72 Aligned_cols=16 Identities=31% Similarity=0.681 Sum_probs=12.8
Q ss_pred hhhhCCCCCCceeHHH
Q psy10242 17 FSLFDKDGSGTITAKH 32 (77)
Q Consensus 17 f~~~d~~~~g~i~~~e 32 (77)
|..+|.+++|.|...+
T Consensus 92 f~~yD~dgDG~vd~~d 107 (286)
T TIGR03296 92 FDRYDLDGDGNFDEPD 107 (286)
T ss_pred cccccccCCCccCCCC
Confidence 5678999999998644
No 266
>COG5562 Phage envelope protein [General function prediction only]
Probab=28.47 E-value=44 Score=17.83 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=14.2
Q ss_pred cCCCCCcceeHHHHHHHHH
Q psy10242 56 VDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 56 ~~~~~~~~i~~~~f~~~~~ 74 (77)
+.....|..+|++|+..+-
T Consensus 81 l~~~qsGqttF~ef~~~la 99 (137)
T COG5562 81 LRRHQSGQTTFEEFCSALA 99 (137)
T ss_pred HHHHhcCCccHHHHHHHHH
Confidence 3345578899999998764
No 267
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=28.31 E-value=86 Score=15.47 Aligned_cols=47 Identities=17% Similarity=0.328 Sum_probs=31.2
Q ss_pred CCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 24 GSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 24 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
++|.++.++...+-. .+.+.+.++.++..... -|.-.|..|+.++..
T Consensus 32 ~~gIlT~~~~e~I~a---~~T~~~k~~~LLdiLp~--RG~~AF~~F~~aL~e 78 (94)
T cd08327 32 QEGILTESHVEEIES---QTTSRRKTMKLLDILPS--RGPKAFHAFLDSLEE 78 (94)
T ss_pred hCCCCCHHHHHHHHc---cCChHHHHHHHHHHHHh--hChhHHHHHHHHHHH
Confidence 357788777655443 33456677778777643 456778999888754
No 268
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=27.82 E-value=70 Score=14.60 Aligned_cols=14 Identities=36% Similarity=0.660 Sum_probs=9.5
Q ss_pred CcceeHHHHHHHHH
Q psy10242 61 KGIIDFPHFLELMM 74 (77)
Q Consensus 61 ~~~i~~~~f~~~~~ 74 (77)
.|.|+++.|+.-++
T Consensus 37 ~g~I~~d~~lK~vR 50 (65)
T PF09454_consen 37 RGSIDLDTFLKQVR 50 (65)
T ss_dssp TTSS-HHHHHHHHH
T ss_pred cCCCCHHHHHHHHH
Confidence 46788888887664
No 269
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=27.78 E-value=88 Score=15.41 Aligned_cols=34 Identities=15% Similarity=0.122 Sum_probs=14.8
Q ss_pred CCCCCCH-HHHHHHHHHhhhhCCCCCC-ceeHHHHHHHHHH
Q psy10242 1 MDSFLTE-DQVNDFREAFSLFDKDGSG-TITAKHLGIVMRS 39 (77)
Q Consensus 1 m~~~~~~-~~~~~~~~~f~~~d~~~~g-~i~~~el~~~l~~ 39 (77)
|.+..+. .-+..++.+.+. .| .|..+++..++..
T Consensus 1 MG~~~S~~~fv~~Lk~lLk~-----rGi~v~~~~L~~f~~~ 36 (90)
T PF02337_consen 1 MGQSHSKQPFVSILKHLLKE-----RGIRVKKKDLINFLSF 36 (90)
T ss_dssp --SSS-HHHHHHHHHHHHHC-----CT----HHHHHHHHHH
T ss_pred CCccchhhHHHHHHHHHHHH-----cCeeecHHHHHHHHHH
Confidence 4444444 334555555554 23 4666666666654
No 270
>PF08485 Polysacc_syn_2C: Polysaccharide biosynthesis protein C-terminal; InterPro: IPR013692 This domain is found to the C terminus of the IPR003869 from INTERPRO domain in bacterial polysaccharide biosynthesis enzymes including the capsule protein CapD [] and several putative epimerases/dehydratases. ; GO: 0003978 UDP-glucose 4-epimerase activity, 0009103 lipopolysaccharide biosynthetic process
Probab=27.46 E-value=66 Score=13.89 Aligned_cols=22 Identities=5% Similarity=0.225 Sum_probs=16.3
Q ss_pred hhCCCCCCceeHHHHHHHHHHh
Q psy10242 19 LFDKDGSGTITAKHLGIVMRSL 40 (77)
Q Consensus 19 ~~d~~~~g~i~~~el~~~l~~~ 40 (77)
-+..+++-.++.+++...|..+
T Consensus 23 dYnShNT~rL~ve~~k~lLl~L 44 (48)
T PF08485_consen 23 DYNSHNTERLDVEEMKELLLKL 44 (48)
T ss_pred ccCCCCccccCHHHHHHHHHhC
Confidence 4566777788888888877764
No 271
>PHA02975 hypothetical protein; Provisional
Probab=27.43 E-value=50 Score=15.42 Aligned_cols=11 Identities=36% Similarity=0.914 Sum_probs=6.8
Q ss_pred eHHHHHHHHHh
Q psy10242 65 DFPHFLELMMK 75 (77)
Q Consensus 65 ~~~~f~~~~~~ 75 (77)
+|++|+..++.
T Consensus 19 DF~nFI~vVks 29 (69)
T PHA02975 19 DFEDFIDTIMH 29 (69)
T ss_pred HHHHHHHHHHH
Confidence 46777766554
No 272
>PF14294 DUF4372: Domain of unknown function (DUF4372)
Probab=27.41 E-value=80 Score=14.85 Aligned_cols=30 Identities=10% Similarity=0.317 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHhcCCCC--CcceeHHHHHHHH
Q psy10242 44 PSEAELEEMIREVDPEG--KGIIDFPHFLELM 73 (77)
Q Consensus 44 ~~~~~~~~~~~~~~~~~--~~~i~~~~f~~~~ 73 (77)
++...++.+...+..+. ...-+|+.|+.++
T Consensus 14 i~~~~f~~~v~k~~~d~~~k~f~~~~ql~~ml 45 (76)
T PF14294_consen 14 IPRHEFERIVKKYGGDRYVKKFTCWDQLVAML 45 (76)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 45556666666655443 1222455555554
No 273
>smart00715 LA Domain in the RNA-binding Lupus La protein; unknown function.
Probab=27.33 E-value=83 Score=14.99 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=19.6
Q ss_pred hhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy10242 17 FSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIR 54 (77)
Q Consensus 17 f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~ 54 (77)
-..++.+ +|+|+..-+...-+--....+.+.+...+.
T Consensus 27 r~~~~~~-~g~Vpl~~i~~F~r~k~l~~d~~~i~~Al~ 63 (80)
T smart00715 27 RKKMDKN-DGYVPISTIASFKRVKSLTTDVNLIVEALR 63 (80)
T ss_pred HHHhccC-CCCEEhHHHhCchhHHHHcCCHHHHHHHHH
Confidence 3455666 899997776554433222333444444443
No 274
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=27.29 E-value=26 Score=14.41 Aligned_cols=19 Identities=16% Similarity=0.321 Sum_probs=12.8
Q ss_pred CCCCCCceeHHHHHHHHHH
Q psy10242 21 DKDGSGTITAKHLGIVMRS 39 (77)
Q Consensus 21 d~~~~g~i~~~el~~~l~~ 39 (77)
+....|-++.++++.+++.
T Consensus 7 ~g~~~GP~s~~el~~l~~~ 25 (45)
T PF14237_consen 7 NGQQQGPFSLEELRQLISS 25 (45)
T ss_pred CCeEECCcCHHHHHHHHHc
Confidence 4445677777777777765
No 275
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=26.89 E-value=1e+02 Score=15.84 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=23.9
Q ss_pred CCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10242 24 GSGTITAKHLGIVMRSLGRNPSEAELEEMIREV 56 (77)
Q Consensus 24 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 56 (77)
..|.++.+++..-+..-+..++..++..++..+
T Consensus 25 ~~~~~tl~~Ia~~i~~~~s~~t~~di~~vl~~~ 57 (124)
T PF14848_consen 25 SSGTLTLEDIAEEIAKEGSTLTRADIEAVLNAL 57 (124)
T ss_pred ecCccCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 357888888877776557778888877766554
No 276
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=26.75 E-value=1.2e+02 Score=18.72 Aligned_cols=41 Identities=24% Similarity=0.398 Sum_probs=25.5
Q ss_pred hhhhCCCCCCceeHHHHHHHHHHhCCCCC----------HHHHHHHHHhcC
Q psy10242 17 FSLFDKDGSGTITAKHLGIVMRSLGRNPS----------EAELEEMIREVD 57 (77)
Q Consensus 17 f~~~d~~~~g~i~~~el~~~l~~~~~~~~----------~~~~~~~~~~~~ 57 (77)
|..++.++.+.++..+...++..++.+.. ..++..++..+.
T Consensus 131 FDI~~~~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~ 181 (342)
T cd07894 131 FDIRKKNTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELD 181 (342)
T ss_pred EeeEEcCCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHH
Confidence 44444454567889999998988765432 245556665554
No 277
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=26.66 E-value=82 Score=15.63 Aligned_cols=46 Identities=24% Similarity=0.342 Sum_probs=22.8
Q ss_pred ceeHHHHHHHHHHhCCCCCHHHHH---HHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 27 TITAKHLGIVMRSLGRNPSEAELE---EMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 27 ~i~~~el~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
-++.+++..++...|. ..-++ ..|.....+....++-++.+.++..
T Consensus 35 p~s~~eL~~~l~~~g~---~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~ 83 (105)
T cd03035 35 GLDAATLERWLAKVGW---ETLLNKRGTTWRKLDDAQKAALDAAKAIALMLE 83 (105)
T ss_pred CCCHHHHHHHHHHhCh---HHHHccCchHHHhCChhhhccCCHHHHHHHHHh
Confidence 4567778887776551 11111 1333333221134566676666644
No 278
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=26.09 E-value=1e+02 Score=15.64 Aligned_cols=14 Identities=14% Similarity=0.249 Sum_probs=7.1
Q ss_pred CCCHHHHHHHHHhc
Q psy10242 43 NPSEAELEEMIREV 56 (77)
Q Consensus 43 ~~~~~~~~~~~~~~ 56 (77)
|-+.++++.++...
T Consensus 78 P~~~dElrai~~~~ 91 (112)
T PRK14981 78 PETRDELRAIFAKE 91 (112)
T ss_pred CCCHHHHHHHHHHh
Confidence 34455555555544
No 279
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=25.86 E-value=92 Score=14.98 Aligned_cols=23 Identities=17% Similarity=0.136 Sum_probs=10.8
Q ss_pred eHHHHHHHHHHhCCCCCHHHHHH
Q psy10242 29 TAKHLGIVMRSLGRNPSEAELEE 51 (77)
Q Consensus 29 ~~~el~~~l~~~~~~~~~~~~~~ 51 (77)
+.+++..+.+.....++.+++..
T Consensus 2 ~~~~v~~lA~La~L~l~eee~~~ 24 (93)
T TIGR00135 2 SDEEVKHLAKLARLELSEEEAES 24 (93)
T ss_pred CHHHHHHHHHHhCCCCCHHHHHH
Confidence 34444544444444555554433
No 280
>PF07483 W_rich_C: Tryptophan-rich Synechocystis species C-terminal domain; InterPro: IPR011121 This entry represents a tryptophan-rich domain found in membrane proteins of Synechocystis and Bradyrhizobium; it is normally found in 2 to 3 copies.
Probab=25.41 E-value=96 Score=15.86 Aligned_cols=20 Identities=30% Similarity=0.625 Sum_probs=12.0
Q ss_pred HHHHHHHHHhhhhCCCCCCce
Q psy10242 8 DQVNDFREAFSLFDKDGSGTI 28 (77)
Q Consensus 8 ~~~~~~~~~f~~~d~~~~g~i 28 (77)
.....+...|.+ |.++||.|
T Consensus 89 ~~~~~~E~~F~q-DlNgDG~I 108 (109)
T PF07483_consen 89 SALEQLETSFHQ-DLNGDGTI 108 (109)
T ss_pred HHHHHHHHHhCc-cccCCCcC
Confidence 344555555644 77777765
No 281
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=25.34 E-value=1.3e+02 Score=16.63 Aligned_cols=13 Identities=15% Similarity=0.140 Sum_probs=5.3
Q ss_pred ceeHHHHHHHHHH
Q psy10242 27 TITAKHLGIVMRS 39 (77)
Q Consensus 27 ~i~~~el~~~l~~ 39 (77)
.++.++|...++.
T Consensus 151 kmt~~~Fi~~~~~ 163 (187)
T smart00222 151 KMTLEDFIKNVRG 163 (187)
T ss_pred CCCHHHHHHHHhc
Confidence 3444444444433
No 282
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=25.25 E-value=1.3e+02 Score=16.58 Aligned_cols=40 Identities=13% Similarity=-0.007 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHHHHhhhhCCC-------------CCCceeHHHHHHHHHHhCC
Q psy10242 3 SFLTEDQVNDFREAFSLFDKD-------------GSGTITAKHLGIVMRSLGR 42 (77)
Q Consensus 3 ~~~~~~~~~~~~~~f~~~d~~-------------~~g~i~~~el~~~l~~~~~ 42 (77)
.+++++...++.++...+... ..|+|+.+-+..+-+.++.
T Consensus 14 ~~~~~~~~~~i~~ii~~~~~~~~~li~~L~~iQ~~~GyIp~e~~~~iA~~l~v 66 (169)
T PRK07571 14 HPSGDKRFKVLEATMKRNQYRQDALIEVLHKAQELFGYLERDLLLYVARQLKL 66 (169)
T ss_pred CcCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCc
Confidence 355666667777777776532 2466666655555555543
No 283
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=25.19 E-value=80 Score=14.08 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=20.5
Q ss_pred eeHHHHHHHHHHhCCCCCHHHHHHH
Q psy10242 28 ITAKHLGIVMRSLGRNPSEAELEEM 52 (77)
Q Consensus 28 i~~~el~~~l~~~~~~~~~~~~~~~ 52 (77)
.+.+++..+.+..|+.++..++...
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3578888888999999999988764
No 284
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=24.89 E-value=30 Score=16.61 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=20.7
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10242 25 SGTITAKHLGIVMRSLGRNPSEAELEEMIREV 56 (77)
Q Consensus 25 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 56 (77)
+|.=+.-+|-..|..+|..+-...++.++..+
T Consensus 38 S~k~~~p~fPkFLn~LGteIiEnAVefiLrSM 69 (88)
T PF15144_consen 38 SGKNPEPDFPKFLNLLGTEIIENAVEFILRSM 69 (88)
T ss_pred cCCCCCCchHHHHHHhhHHHHHHHHHHHHHHh
Confidence 34445557888888877666666666665554
No 285
>KOG4629|consensus
Probab=24.82 E-value=2.5e+02 Score=19.61 Aligned_cols=57 Identities=21% Similarity=0.179 Sum_probs=36.2
Q ss_pred HHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 12 DFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 12 ~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
.-+++|...-..+.-.+..+++. ..+..++++..+..++...+..|+++.|...+.+
T Consensus 405 aA~~iF~nv~~p~~~~i~ld~~~-------~f~~~E~a~~~~slfe~~~~~~Itrs~~~~~iv~ 461 (714)
T KOG4629|consen 405 AARKIFKNVAKPGVILIDLDDLL-------RFMGDEEAERAFSLFEGASDENITRSSFKEWIVN 461 (714)
T ss_pred HHHHHHhccCCCCccchhhhhhh-------hcCCHHHHHHHHHhhhhhcccCccHHHHHHHHHH
Confidence 44555665555444444433332 2356678888888888777777999988877643
No 286
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=24.76 E-value=76 Score=15.89 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=12.3
Q ss_pred CcceeHHHHHHHHHhh
Q psy10242 61 KGIIDFPHFLELMMKK 76 (77)
Q Consensus 61 ~~~i~~~~f~~~~~~~ 76 (77)
--.|+|.+|+.+..++
T Consensus 75 v~~i~y~~fVdLt~~~ 90 (96)
T COG2168 75 VILIDYTEFVDLTEKH 90 (96)
T ss_pred eeEeeHHHHHHHHHhh
Confidence 3468999999988654
No 287
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=24.65 E-value=83 Score=14.09 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=14.7
Q ss_pred eeHHHHHHHHHHhCC----CCCHHHHHHHH
Q psy10242 28 ITAKHLGIVMRSLGR----NPSEAELEEMI 53 (77)
Q Consensus 28 i~~~el~~~l~~~~~----~~~~~~~~~~~ 53 (77)
|..++|...++..|. ..+...+....
T Consensus 25 I~L~el~~~L~~~g~~~~~~~~~~~l~~~l 54 (64)
T PF09494_consen 25 INLEELHAWLKASGIGFDRKVDPSKLKEWL 54 (64)
T ss_pred ccHHHHHHHHHHcCCCccceeCHHHHHHHH
Confidence 566677777775555 44444444433
No 288
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.55 E-value=1.5e+02 Score=16.84 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=8.6
Q ss_pred hcCCCCCcceeHHHHHHH
Q psy10242 55 EVDPEGKGIIDFPHFLEL 72 (77)
Q Consensus 55 ~~~~~~~~~i~~~~f~~~ 72 (77)
.|..|+.|.|+...-+.+
T Consensus 127 af~~dk~G~l~~~rIl~L 144 (195)
T PF11363_consen 127 AFQVDKEGNLNTSRILGL 144 (195)
T ss_pred HHhcCCCCCcCHHHHHHH
Confidence 344455555555444433
No 289
>PHA02819 hypothetical protein; Provisional
Probab=24.51 E-value=60 Score=15.24 Aligned_cols=11 Identities=27% Similarity=0.751 Sum_probs=6.7
Q ss_pred eHHHHHHHHHh
Q psy10242 65 DFPHFLELMMK 75 (77)
Q Consensus 65 ~~~~f~~~~~~ 75 (77)
+|++|+...+.
T Consensus 19 DFnnFI~VVks 29 (71)
T PHA02819 19 DFNNFINVVKS 29 (71)
T ss_pred HHHHHHHHHHH
Confidence 46677666543
No 290
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=24.47 E-value=96 Score=14.72 Aligned_cols=45 Identities=13% Similarity=0.172 Sum_probs=31.2
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 25 SGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 25 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
.|.|+.++...+-. .+.+.+..+.++..... .|...|..|..++.
T Consensus 27 ~~Vit~e~~~~I~a---~~T~~~kar~Lld~l~~--kG~~A~~~F~~~L~ 71 (82)
T cd08330 27 KKVITQEQYSEVRA---EKTNQEKMRKLFSFVRS--WGASCKDIFYQILR 71 (82)
T ss_pred CCCCCHHHHHHHHc---CCCcHHHHHHHHHHHHc--cCHHHHHHHHHHHH
Confidence 57788777555444 33556777888887644 56788899988875
No 291
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=24.42 E-value=1e+02 Score=16.45 Aligned_cols=19 Identities=16% Similarity=0.377 Sum_probs=16.2
Q ss_pred CCCCHHHHHHHHHHhhhhC
Q psy10242 3 SFLTEDQVNDFREAFSLFD 21 (77)
Q Consensus 3 ~~~~~~~~~~~~~~f~~~d 21 (77)
+.++++++..++..|...=
T Consensus 9 ~GFS~~eI~~LR~QF~~~~ 27 (140)
T PF13373_consen 9 AGFSPEEIQDLRSQFHSIY 27 (140)
T ss_pred cCCCHHHHHHHHHHHHHHh
Confidence 4789999999999998653
No 292
>KOG4286|consensus
Probab=24.40 E-value=1.3e+02 Score=21.16 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=36.0
Q ss_pred HHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC
Q psy10242 12 DFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPE 59 (77)
Q Consensus 12 ~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~ 59 (77)
.+.-+...||+..+|.|..-+|+-.+-.+...+..+..+-+|.....+
T Consensus 471 ~lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~ 518 (966)
T KOG4286|consen 471 CLNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASS 518 (966)
T ss_pred HHHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCc
Confidence 444556689999999999988888887776666666777788876544
No 293
>PF14297 DUF4373: Domain of unknown function (DUF4373)
Probab=24.33 E-value=96 Score=14.69 Aligned_cols=10 Identities=0% Similarity=0.159 Sum_probs=4.7
Q ss_pred eHHHHHHHHH
Q psy10242 29 TAKHLGIVMR 38 (77)
Q Consensus 29 ~~~el~~~l~ 38 (77)
+.+.+.+++.
T Consensus 59 ~~~~v~~II~ 68 (87)
T PF14297_consen 59 SEEYVEEIIN 68 (87)
T ss_pred CHHHHHHHHH
Confidence 3444555544
No 294
>PF05788 Orbi_VP1: Orbivirus RNA-dependent RNA polymerase (VP1); InterPro: IPR008723 This family consists of the RNA-dependent RNA polymerase protein VP1 from the Orbivirus. VP1 may have both enzymatic and structural roles in the virus life cycle [].; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=24.24 E-value=1.1e+02 Score=22.30 Aligned_cols=39 Identities=23% Similarity=0.277 Sum_probs=32.6
Q ss_pred CCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC
Q psy10242 21 DKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPE 59 (77)
Q Consensus 21 d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~ 59 (77)
|.--.|+|+..-...+++.+|...+..++.-+|..+..+
T Consensus 1131 DvVMRGfiTsn~Il~vle~iG~~h~a~Dl~~iF~lmNl~ 1169 (1301)
T PF05788_consen 1131 DVVMRGFITSNTILNVLEKIGFGHSASDLATIFTLMNLE 1169 (1301)
T ss_pred hhhhhhhhhhHHHHHHHHHhcCCCCHHHHHHHHHHhccc
Confidence 555579999999999999999999999988887776443
No 295
>PHA02844 putative transmembrane protein; Provisional
Probab=24.16 E-value=62 Score=15.38 Aligned_cols=11 Identities=27% Similarity=0.806 Sum_probs=6.7
Q ss_pred eHHHHHHHHHh
Q psy10242 65 DFPHFLELMMK 75 (77)
Q Consensus 65 ~~~~f~~~~~~ 75 (77)
+|++|+..++.
T Consensus 19 DFnnFI~vVks 29 (75)
T PHA02844 19 DFNNFIDVVKS 29 (75)
T ss_pred HHHHHHHHHHH
Confidence 46677666543
No 296
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=24.14 E-value=88 Score=14.21 Aligned_cols=46 Identities=15% Similarity=0.306 Sum_probs=29.7
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 25 SGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 25 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
.|.++.++...+.... .+.+....++..... .|.=.|..|+..+..
T Consensus 25 ~~vlt~~e~~~i~~~~---~~~~k~~~Lld~l~~--kg~~af~~F~~~L~~ 70 (80)
T cd01671 25 DGVLTEEEYEKIRSES---TRQDKARKLLDILPR--KGPKAFQSFLQALQE 70 (80)
T ss_pred cCCCCHHHHHHHHcCC---ChHHHHHHHHHHHHh--cChHHHHHHHHHHHh
Confidence 5788888876654432 256666777777654 344567888877753
No 297
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=24.03 E-value=96 Score=15.52 Aligned_cols=26 Identities=15% Similarity=0.386 Sum_probs=15.6
Q ss_pred HHHHHHHHhcCCCCCcceeHHHHHHHHHh
Q psy10242 47 AELEEMIREVDPEGKGIIDFPHFLELMMK 75 (77)
Q Consensus 47 ~~~~~~~~~~~~~~~~~i~~~~f~~~~~~ 75 (77)
+.++.+....- +|+|+.++|..-+..
T Consensus 27 ~~Vr~LV~~L~---~~~i~~EeF~~~Lq~ 52 (96)
T PF07531_consen 27 ENVRELVQNLV---DGKIEAEEFTSKLQE 52 (96)
T ss_dssp HHHHHHHHHHH---TTSS-HHHHHHHHHH
T ss_pred HHHHHHHHHHH---cCCCCHHHHHHHHHH
Confidence 44555554432 467888999887654
No 298
>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen. This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=23.92 E-value=98 Score=14.62 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=14.6
Q ss_pred hhhCCCCCCceeHHHHHHHHHH
Q psy10242 18 SLFDKDGSGTITAKHLGIVMRS 39 (77)
Q Consensus 18 ~~~d~~~~g~i~~~el~~~l~~ 39 (77)
..+..+++|+|+.+-+...-+-
T Consensus 25 ~~~~~~~~G~Vpl~~i~~F~rm 46 (76)
T cd08029 25 TLTGGSNNGWVPIKTIASFKRM 46 (76)
T ss_pred HHhccCCCCcEehHHHhCchHH
Confidence 3455677899998776654443
No 299
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=23.67 E-value=1.5e+02 Score=16.78 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCCCCCcceeHHHHHHHHHhh
Q psy10242 46 EAELEEMIREVDPEGKGIIDFPHFLELMMKK 76 (77)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~ 76 (77)
.+.+..+|...-....++-+=.||+.++..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 254 (262)
T TIGR02875 224 IEPINKLFGYTIEGEKGKPTNSEFIAMVADK 254 (262)
T ss_pred HHHHHHHhCcccccCCCCCChHHHHHHHHHH
Confidence 3444444444333345666778888887654
No 300
>PHA02650 hypothetical protein; Provisional
Probab=23.25 E-value=65 Score=15.51 Aligned_cols=11 Identities=27% Similarity=0.806 Sum_probs=6.7
Q ss_pred eHHHHHHHHHh
Q psy10242 65 DFPHFLELMMK 75 (77)
Q Consensus 65 ~~~~f~~~~~~ 75 (77)
+|++|+..++.
T Consensus 19 DFnnFI~VVkS 29 (81)
T PHA02650 19 DFNNFIDVVKS 29 (81)
T ss_pred HHHHHHHHHHH
Confidence 46677666543
No 301
>PF14178 YppF: YppF-like protein
Probab=23.21 E-value=93 Score=14.14 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=8.6
Q ss_pred CceeHHHHHHHHHHh
Q psy10242 26 GTITAKHLGIVMRSL 40 (77)
Q Consensus 26 g~i~~~el~~~l~~~ 40 (77)
|.|+..+++.+++.+
T Consensus 35 gei~i~eYR~lvreL 49 (60)
T PF14178_consen 35 GEISINEYRNLVREL 49 (60)
T ss_pred CcccHHHHHHHHHHH
Confidence 556666666555543
No 302
>PF15601 Imm42: Immunity protein 42
Probab=22.95 E-value=1.4e+02 Score=15.95 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=11.8
Q ss_pred CCceeHHHHHHHHHHh
Q psy10242 25 SGTITAKHLGIVMRSL 40 (77)
Q Consensus 25 ~g~i~~~el~~~l~~~ 40 (77)
+|++..+++..+++.+
T Consensus 47 ~g~L~~~~~~~A~~eL 62 (134)
T PF15601_consen 47 RGYLRYEELEKALKEL 62 (134)
T ss_pred cCCCCHHHHHHHHHHH
Confidence 5778888877777664
No 303
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=22.87 E-value=44 Score=16.11 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=8.2
Q ss_pred CCCcceeHHHHHHHHH
Q psy10242 59 EGKGIIDFPHFLELMM 74 (77)
Q Consensus 59 ~~~~~i~~~~f~~~~~ 74 (77)
+.+...+|++|-.++.
T Consensus 17 ~r~~~~~f~ef~~ll~ 32 (80)
T cd06403 17 DRNKPGKFEDFYKLLE 32 (80)
T ss_pred ccccCcCHHHHHHHHH
Confidence 3333455666655553
No 304
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=22.75 E-value=1.1e+02 Score=14.83 Aligned_cols=48 Identities=13% Similarity=0.123 Sum_probs=29.1
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHHH
Q psy10242 25 SGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74 (77)
Q Consensus 25 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 74 (77)
.|.++.++...+...............+....... |.=.|..|+..+.
T Consensus 28 ~~VLt~~d~EeI~~~~t~~~r~~ka~~LLdiL~~r--G~~Af~~F~~aL~ 75 (86)
T cd08785 28 CKVLDEQDEEEVLSSPRLPIRANRTGRLLDILATR--GKRGYVAFLESLE 75 (86)
T ss_pred cCCCCHHHHHHHhCCCccccHHHHHHHHHHHHHhc--CcchHHHHHHHHH
Confidence 46777777766666433332445666677766443 4456777777764
No 305
>KOG1785|consensus
Probab=22.74 E-value=1.9e+02 Score=18.80 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=25.7
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccee
Q psy10242 25 SGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIID 65 (77)
Q Consensus 25 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 65 (77)
...+++..|+++|...-...+.-+...+=...|...++.|+
T Consensus 188 k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS 228 (563)
T KOG1785|consen 188 KTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFIS 228 (563)
T ss_pred cccccHHHHHHHHHhcCCCcchhHHHHhhceecccccccee
Confidence 45678888999888763333334444444455666677775
No 306
>cd07323 LAM LA motif RNA-binding domain. This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=22.72 E-value=1e+02 Score=14.42 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=20.0
Q ss_pred CCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy10242 23 DGSGTITAKHLGIVMRSLGRNPSEAELEEMIRE 55 (77)
Q Consensus 23 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 55 (77)
+.+|+++.+-+...-+--....+.+.+...+..
T Consensus 28 ~~~g~Vpl~~i~~F~r~k~l~~~~~~i~~Al~~ 60 (75)
T cd07323 28 DDDGWVPLSLLASFNRVKKLTTDVELILEALRD 60 (75)
T ss_pred CCCCCEEHHHHhCchHHHHHcCCHHHHHHHHHh
Confidence 668999987766655443344455555555544
No 307
>PF10982 DUF2789: Protein of unknown function (DUF2789); InterPro: IPR021250 This bacterial family of proteins has no known function. ; PDB: 2KP6_A.
Probab=22.69 E-value=1.1e+02 Score=14.59 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=14.5
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHhcCCC
Q psy10242 32 HLGIVMRSLGRNPSEAELEEMIREVDPE 59 (77)
Q Consensus 32 el~~~l~~~~~~~~~~~~~~~~~~~~~~ 59 (77)
.+..++..+|.+-+...++..+......
T Consensus 7 ~l~~LF~QLGL~~~~~~I~~FI~~H~L~ 34 (74)
T PF10982_consen 7 TLSNLFAQLGLDSSDEAIEAFIETHQLP 34 (74)
T ss_dssp HHHHHHHHHTS---HHHHHHHHHHS---
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHhCCCC
Confidence 4556666677776777776666665433
No 308
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=22.61 E-value=1.1e+02 Score=20.11 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=28.8
Q ss_pred CCCCceeHHHHH-HHHHHhCCCCCHHHHHHHHHhcCCC
Q psy10242 23 DGSGTITAKHLG-IVMRSLGRNPSEAELEEMIREVDPE 59 (77)
Q Consensus 23 ~~~g~i~~~el~-~~l~~~~~~~~~~~~~~~~~~~~~~ 59 (77)
|-+|.|+..++. .+..-+|...+...+..++...+.+
T Consensus 381 DiDGTITkSD~~Ghv~~miGkdwth~gVAkLYtdI~rN 418 (580)
T COG5083 381 DIDGTITKSDALGHVKQMIGKDWTHNGVAKLYTDIDRN 418 (580)
T ss_pred ecCCcEEehhhHHHHHHHhccchhhcchhhhhhhhccC
Confidence 457999998877 6666678888888888888877644
No 309
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=22.46 E-value=1.2e+02 Score=15.13 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=11.0
Q ss_pred eeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10242 28 ITAKHLGIVMRSLGRNPSEAELEEMIREV 56 (77)
Q Consensus 28 i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 56 (77)
++..+..+++.. .|-+..++..++...
T Consensus 71 L~~~E~~qi~Nl--~P~~~~El~~ii~~~ 97 (117)
T PF03874_consen 71 LTEFEILQIINL--RPTTAVELRAIIESL 97 (117)
T ss_dssp S-HHHHHHHHHH----SSHHHHHHHSTTG
T ss_pred CCHHHHHHHhcC--CCCCHHHHHHHHHHh
Confidence 455555444443 233444444444443
No 310
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=22.45 E-value=88 Score=13.60 Aligned_cols=30 Identities=10% Similarity=0.242 Sum_probs=20.1
Q ss_pred CCCceeHHHHHHHHHHhCCCCCHHHHHHHH
Q psy10242 24 GSGTITAKHLGIVMRSLGRNPSEAELEEMI 53 (77)
Q Consensus 24 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~ 53 (77)
.+|.|+.+||..=+.....--+..++..++
T Consensus 20 a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~ 49 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAYAARTRGELDALF 49 (53)
T ss_pred HCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 369999999887777654444555555554
No 311
>PF13099 DUF3944: Domain of unknown function (DUF3944)
Probab=22.30 E-value=75 Score=12.73 Aligned_cols=19 Identities=16% Similarity=0.421 Sum_probs=11.0
Q ss_pred CHHHHHHHHHhcCCCCCcc
Q psy10242 45 SEAELEEMIREVDPEGKGI 63 (77)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~ 63 (77)
+.++++.++.....+++|.
T Consensus 14 s~edL~~L~~~Lt~dkdG~ 32 (35)
T PF13099_consen 14 SNEDLKDLVDILTHDKDGK 32 (35)
T ss_pred CHHHHHHHHHHHhcCCCCC
Confidence 4556666666655555554
No 312
>KOG1774|consensus
Probab=22.05 E-value=22 Score=17.19 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=13.0
Q ss_pred hcCCCCCcce-eHHHHHHHHH
Q psy10242 55 EVDPEGKGII-DFPHFLELMM 74 (77)
Q Consensus 55 ~~~~~~~~~i-~~~~f~~~~~ 74 (77)
..+....|+| .|+||+++..
T Consensus 34 q~~~rieG~IvGFDEyMNvVl 54 (88)
T KOG1774|consen 34 QVGLRIEGRIVGFDEYMNLVL 54 (88)
T ss_pred ccCcEEeEEEechHHhhhhhh
Confidence 3444456665 7999988753
No 313
>PF06819 Arc_PepC: Archaeal Peptidase A24 C-terminal Domain; InterPro: IPR009639 This region is of unknown function found at the C terminus of some archael proteins that have multiple transmembrane domains and are predicted to be aspartic peptidases belonging to the MEROPS peptidase subfamily A24A (type 4 prepilin peptidase 1.
Probab=21.81 E-value=1.3e+02 Score=15.54 Aligned_cols=18 Identities=6% Similarity=0.215 Sum_probs=12.7
Q ss_pred CCCCCCHHHHHHHHHHhh
Q psy10242 1 MDSFLTEDQVNDFREAFS 18 (77)
Q Consensus 1 m~~~~~~~~~~~~~~~f~ 18 (77)
|+..++.++++.++++..
T Consensus 83 ~~EGLs~E~IE~Lk~Lv~ 100 (110)
T PF06819_consen 83 DAEGLSKEDIEKLKKLVE 100 (110)
T ss_pred cccCCCHHHHHHHHHHHH
Confidence 456778888887777653
No 314
>PF10208 Armet: Degradation arginine-rich protein for mis-folding; InterPro: IPR019345 This entry represents Armet proteins (aka mesencephalic astrocyte-derived neurotrophic factor or arginine-rich protein). Armet is a small protein of approximately 170 residues which contains four di-sulphide bridges that are highly conserved from nematodes to humans. Armet is a soluble protein resident in the endoplasmic reticulum and induced by ER stress. It appears to be involved with dealing with mis-folded proteins in the ER, thus in quality control of ER stress []. Armet from Rattus norvegicus (Rat) selectively promotes the survival of dopaminergic neurons of the ventral mid-brain. It modulates GABAergic transmission to the dopaminergic neurons of the substantia nigra, and enhances spontaneous, as well as evoked, GABAergic inhibitory postsynaptic currents in dopaminergic neurons [].; PDB: 2KVE_A 2KVD_A 2W51_A 2W50_B 2RQY_A.
Probab=21.80 E-value=1.6e+02 Score=16.20 Aligned_cols=31 Identities=13% Similarity=0.289 Sum_probs=16.2
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHHh
Q psy10242 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSL 40 (77)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~ 40 (77)
...++++-..++.+..|.+...+|..-+..+
T Consensus 109 Vk~LK~iL~~~g~~C~GC~EK~dfv~ri~el 139 (154)
T PF10208_consen 109 VKQLKKILDDWGEDCKGCLEKSDFVRRIEEL 139 (154)
T ss_dssp HHHHHHHHHHHTTT-SS-CSHHHHHHHCHCC
T ss_pred HHHHHHHHHHcCCCCCCccchHHHHHHHHHH
Confidence 3445555555555666666666665555544
No 315
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=21.48 E-value=81 Score=12.78 Aligned_cols=13 Identities=23% Similarity=0.274 Sum_probs=9.5
Q ss_pred CCceeHHHHHHHH
Q psy10242 25 SGTITAKHLGIVM 37 (77)
Q Consensus 25 ~g~i~~~el~~~l 37 (77)
-|.|+.+++..+.
T Consensus 24 ~g~IT~eey~eIT 36 (40)
T PF09693_consen 24 AGWITKEEYKEIT 36 (40)
T ss_pred cCeECHHHHHHhh
Confidence 4788888877653
No 316
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=21.32 E-value=1.3e+02 Score=16.40 Aligned_cols=21 Identities=14% Similarity=0.398 Sum_probs=15.3
Q ss_pred CCCHHHHHHHHHHhhhhCCCC
Q psy10242 4 FLTEDQVNDFREAFSLFDKDG 24 (77)
Q Consensus 4 ~~~~~~~~~~~~~f~~~d~~~ 24 (77)
.++++++..+..--..+|+++
T Consensus 23 ~LS~EEL~~L~~el~e~DPd~ 43 (147)
T PF03250_consen 23 KLSPEELEELENELEEMDPDN 43 (147)
T ss_pred hCCHHHHHHHHHHHHhhCCCc
Confidence 577888888877666677654
No 317
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=21.22 E-value=1.8e+02 Score=16.76 Aligned_cols=48 Identities=8% Similarity=0.161 Sum_probs=30.3
Q ss_pred CCHHHHHHHHH---HhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q psy10242 5 LTEDQVNDFRE---AFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVD 57 (77)
Q Consensus 5 ~~~~~~~~~~~---~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 57 (77)
++....+++.. .+..+..++--+++.+|+...+. .+...+++=|..|.
T Consensus 7 IP~AT~kRL~~YyR~le~l~a~~v~rvsS~els~~~~-----vdsatIRrDfSYFG 57 (211)
T COG2344 7 IPKATAKRLPLYYRVLERLHASGVERVSSKELSEALG-----VDSATIRRDFSYFG 57 (211)
T ss_pred CCHHHHHHhHHHHHHHHHHHHcCCceecHHHHHHHhC-----CCHHHHhhhhHHHH
Confidence 44555555544 45555688888999999888764 35556666555543
No 318
>KOG4064|consensus
Probab=21.19 E-value=1.6e+02 Score=16.23 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=14.3
Q ss_pred HHHHHHhhhhCCCCCCceeHHHHHHHHHHhC
Q psy10242 11 NDFREAFSLFDKDGSGTITAKHLGIVMRSLG 41 (77)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~ 41 (77)
..+.++|.. ..++.+++..++....
T Consensus 19 ~~lh~~F~~------~~vnveeV~~lM~sYk 43 (196)
T KOG4064|consen 19 VQLHEIFQQ------KLVNVEEVMKLMASYK 43 (196)
T ss_pred HHHHHHHHh------cccCHHHHHHHHHHhh
Confidence 345555543 4566677666666543
No 319
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=21.14 E-value=1.2e+02 Score=14.70 Aligned_cols=11 Identities=27% Similarity=0.172 Sum_probs=7.8
Q ss_pred ceeHHHHHHHH
Q psy10242 63 IIDFPHFLELM 73 (77)
Q Consensus 63 ~i~~~~f~~~~ 73 (77)
.|++++|...+
T Consensus 76 ~it~~e~~~al 86 (87)
T PF13331_consen 76 GITREEFEEAL 86 (87)
T ss_pred CCCHHHHHHHh
Confidence 47788887665
No 320
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=21.07 E-value=99 Score=15.54 Aligned_cols=17 Identities=18% Similarity=0.460 Sum_probs=14.3
Q ss_pred CCceeHHHHHHHHHHhC
Q psy10242 25 SGTITAKHLGIVMRSLG 41 (77)
Q Consensus 25 ~g~i~~~el~~~l~~~~ 41 (77)
+|.|+.+||..++..++
T Consensus 27 ~~~is~~ef~~iI~~IN 43 (118)
T PF10256_consen 27 SGYISPEEFEEIINTIN 43 (118)
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 68899999999988763
No 321
>PF02459 Adeno_terminal: Adenoviral DNA terminal protein; InterPro: IPR003391 The genome of adenovirus contains a protein covalently bound to the 5' end of each strand of the linear DNA molecule []. Since adenovirus DNA replication is initiated at the termini of the DNA molecule it has been proposed that the terminal protein serves as the primer for initiation of replication. However, the priming function now appears to reside in the precursor form of the terminal protein (pTP) found on the 5' ends of nascent DNA strands replicated in vitro [, ] and as a component of DNA-protein complexes isolated from virions of the protease-deficient adenovirus serotype 2 (Ad2) mutant tsl. The pTP is encoded by the leftward-transcribed strand of the viral genome and comprises part of a transcription unit that also encodes the single-strand DNA binding protein [].; GO: 0003677 DNA binding, 0006260 DNA replication
Probab=21.04 E-value=2e+02 Score=19.23 Aligned_cols=45 Identities=11% Similarity=0.395 Sum_probs=32.2
Q ss_pred HHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC
Q psy10242 15 EAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPE 59 (77)
Q Consensus 15 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~ 59 (77)
.+-...+..+.|.++.+|..++|..+.+.-..-+++.++.....+
T Consensus 459 Dl~~~verag~~~~~~ee~e~~l~dI~y~~nSGDv~eIL~Q~~~n 503 (548)
T PF02459_consen 459 DLLATVERAGRGELEEEEIEQFLADIAYRDNSGDVEEILRQAALN 503 (548)
T ss_pred HHHHHHhccCcccCCHHHHHHHHHHhcccccCCCHHHHHHHhhcc
Confidence 333455677788899999999999887776666677777766443
No 322
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=20.89 E-value=47 Score=17.80 Aligned_cols=12 Identities=17% Similarity=0.213 Sum_probs=5.0
Q ss_pred CceeHHHHHHHH
Q psy10242 26 GTITAKHLGIVM 37 (77)
Q Consensus 26 g~i~~~el~~~l 37 (77)
+.|+.+-|..-|
T Consensus 40 ~~iD~~~L~~yL 51 (140)
T PF13075_consen 40 QSIDFERLAPYL 51 (140)
T ss_pred ceecHHHHhhhc
Confidence 344444444333
No 323
>PRK11911 flgD flagellar basal body rod modification protein; Provisional
Probab=20.88 E-value=1.1e+02 Score=16.42 Aligned_cols=14 Identities=14% Similarity=0.408 Sum_probs=8.1
Q ss_pred cceeHHHHHHHHHh
Q psy10242 62 GIIDFPHFLELMMK 75 (77)
Q Consensus 62 ~~i~~~~f~~~~~~ 75 (77)
..++.++|++++..
T Consensus 24 ~~L~~d~FLkLLva 37 (140)
T PRK11911 24 KTLGKDDFMKLFLT 37 (140)
T ss_pred cccCHHHHHHHHHH
Confidence 34666666666543
No 324
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=20.86 E-value=1.4e+02 Score=15.14 Aligned_cols=41 Identities=5% Similarity=0.135 Sum_probs=31.3
Q ss_pred eeHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCcceeHHHHHHHH
Q psy10242 28 ITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELM 73 (77)
Q Consensus 28 i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~ 73 (77)
++.+++..+|...+.......+..+...+. ..+.++.+...
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa-----Gk~V~eli~~g 57 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN-----GKNIDEVISKG 57 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc-----CCCHHHHHHHH
Confidence 999999999999998888888887777763 23555555443
No 325
>PRK10356 hypothetical protein; Provisional
Probab=20.64 E-value=2.1e+02 Score=17.30 Aligned_cols=42 Identities=7% Similarity=0.111 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCC
Q psy10242 4 FLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPS 45 (77)
Q Consensus 4 ~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~ 45 (77)
.+++.+...+..++..|....++.....++..++..+...+.
T Consensus 110 ~ls~~e~~~L~~la~~Ykv~~~~~~~~~~~~~LL~RVDiIP~ 151 (274)
T PRK10356 110 QWSPAERARLKDIAKRYKVKWSGNTRKIPWNTLLERVDIIPT 151 (274)
T ss_pred CCCHHHHHHHHHHHHHcCCCcCCCcchhhHHHHHHHhCcCCH
Confidence 467778888888888888775555555556666666654433
No 326
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=20.51 E-value=1.6e+02 Score=15.81 Aligned_cols=9 Identities=33% Similarity=0.874 Sum_probs=5.1
Q ss_pred eHHHHHHHH
Q psy10242 65 DFPHFLELM 73 (77)
Q Consensus 65 ~~~~f~~~~ 73 (77)
+|++++.++
T Consensus 44 ~~~~mL~~l 52 (141)
T PF12588_consen 44 DYDEMLQLL 52 (141)
T ss_pred cHHHHHHHH
Confidence 566665554
No 327
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=20.48 E-value=1.5e+02 Score=15.57 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=34.2
Q ss_pred CCCceeHHHHHHHHHHh-------C--CCCCHHHHHHHHHhcCCCCCc-ceeHHHHHHH
Q psy10242 24 GSGTITAKHLGIVMRSL-------G--RNPSEAELEEMIREVDPEGKG-IIDFPHFLEL 72 (77)
Q Consensus 24 ~~g~i~~~el~~~l~~~-------~--~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~ 72 (77)
|+-.|+.+||.+++..- | ...+++.++.+...+.....+ .++..+-+..
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 45678889999888762 1 124778888888888765554 4887776554
No 328
>PF02093 Gag_p30: Gag P30 core shell protein; InterPro: IPR003036 P30 is essential for viral assembly []. Cleavage of P70 in vitro can be accompanied by a shift from a concentrically coiled internal strand ("immature") to a collapsed ("mature") form of the virus core [].; GO: 0019068 virion assembly; PDB: 3BP9_U 1U7K_D 2Y4Z_A 1BM4_A.
Probab=20.44 E-value=1.9e+02 Score=16.74 Aligned_cols=39 Identities=15% Similarity=0.231 Sum_probs=24.9
Q ss_pred HHHHHHHHhhhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10242 9 QVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREV 56 (77)
Q Consensus 9 ~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 56 (77)
-+..++.++..+++ ++++++++|..+ ++.++-+.++..+
T Consensus 27 li~lle~i~~Th~p------TWdDcqqLL~~L---fT~EEr~rI~~~A 65 (211)
T PF02093_consen 27 LISLLESIFQTHQP------TWDDCQQLLQTL---FTTEERERILQEA 65 (211)
T ss_dssp HHHHHHHHHHHT---------HHHHHHHHHHH---S-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC------CHHHHHHHHHHH---cCHHHHHHHHHHH
Confidence 46678888888887 788888888876 5666655555443
No 329
>KOG0713|consensus
Probab=20.27 E-value=2.4e+02 Score=17.68 Aligned_cols=45 Identities=11% Similarity=0.205 Sum_probs=27.7
Q ss_pred HHHHHHhhh----h--CCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10242 11 NDFREAFSL----F--DKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREV 56 (77)
Q Consensus 11 ~~~~~~f~~----~--d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 56 (77)
.+++++|++ + |+|.+.---.++|..+-... ..++..+.+..+..+
T Consensus 31 ~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AY-EVLsDpekRk~YD~~ 81 (336)
T KOG0713|consen 31 QEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAY-EVLSDPEKRKHYDTY 81 (336)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH-HHhcCHHHHHHHHhh
Confidence 344555553 3 55556666677777766654 346777777777765
No 330
>PF12703 plasmid_Toxin: Toxin of toxin-antitoxin type 1 system; InterPro: IPR024640 This family is the toxin of a type 1 toxin-antitoxin system which is found in a relatively widespread range of bacterial species. The species distribution suggests frequent horizontal gene transfer. In a type 1 system, as characterised for the plasmid-encoded E coli hok/sok system, the toxin-encoding stable mRNA encodes a protein which rapidly leads to cell death unless the translation is suppressed by a short-lived small RNA. The plasmid-encoded module prevents the growth of plasmid-free offspring, thus ensuring the persistence of the plasmid in the population. Plasmid-free cells arising after cell-division will be killed because the stable mRNA toxin is present while the comparably unstable anti-toxin is rapidly degraded. Where the system is transcribed chromosomally, the mechanism is poorly understood [].
Probab=20.26 E-value=1.2e+02 Score=14.26 Aligned_cols=19 Identities=16% Similarity=0.314 Sum_probs=14.7
Q ss_pred CCCCCceeHHHHHHHHHHh
Q psy10242 22 KDGSGTITAKHLGIVMRSL 40 (77)
Q Consensus 22 ~~~~g~i~~~el~~~l~~~ 40 (77)
...+|..+.++|+.++..+
T Consensus 51 QAeTgrAT~~DF~eAm~~I 69 (74)
T PF12703_consen 51 QAETGRATQEDFREAMSAI 69 (74)
T ss_pred HhhcccCcHHHHHHHHHHH
Confidence 3457888999999888764
No 331
>PF09476 Pilus_CpaD: Pilus biogenesis CpaD protein (pilus_cpaD); InterPro: IPR019027 Proteins in this entry consist of a pilus biogenesis protein, CpaD, from Caulobacter, and homologues in other bacteria, including three in the root nodule bacterium Bradyrhizobium japonicum. The molecular function of the homologues is not known.
Probab=20.23 E-value=1.8e+02 Score=16.44 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCcee
Q psy10242 3 SFLTEDQVNDFREAFSLFDKDGSGTIT 29 (77)
Q Consensus 3 ~~~~~~~~~~~~~~f~~~d~~~~g~i~ 29 (77)
..++..+..++..++..+...+.|.|.
T Consensus 52 ~~Lt~~q~~~l~~f~~~~~~~~~~~v~ 78 (203)
T PF09476_consen 52 GGLTPSQRDRLRGFASRYGRRGGGRVT 78 (203)
T ss_pred CCCCHHHHHHHHHHHHHHhccCCCeEE
Confidence 467888999999999998877777654
Done!