RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10242
(77 letters)
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 112 bits (283), Expect = 5e-34
Identities = 39/76 (51%), Positives = 56/76 (73%)
Query: 1 MDSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEG 60
M LTE+Q+ +F+EAF+LFDKD SG+I+A L VMRSLG +PSEAE+ +++ E+D +G
Sbjct: 1 MSQNLTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDG 60
Query: 61 KGIIDFPHFLELMMKK 76
I+F FL LM ++
Sbjct: 61 NHAIEFSEFLALMSRQ 76
Score = 74.0 bits (183), Expect = 6e-19
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDF 66
D + EAF +FDK+G G I+A L V+ S+G ++AE++EM+REV +G G I+
Sbjct: 80 NDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVS-DGSGEINI 138
Query: 67 PHFLELMMK 75
F L+ K
Sbjct: 139 KQFAALLSK 147
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A
2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B*
2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 111 bits (281), Expect = 8e-34
Identities = 49/72 (68%), Positives = 60/72 (83%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGII 64
LTE+Q+ +F+EAF+LFDKDG GTIT K LG VMRSLG+NP+EAEL++MI EVD +G G I
Sbjct: 4 LTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 63
Query: 65 DFPHFLELMMKK 76
DFP FL LM +K
Sbjct: 64 DFPEFLSLMARK 75
Score = 81.0 bits (201), Expect = 1e-21
Identities = 29/70 (41%), Positives = 46/70 (65%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDF 66
+D + EAF +FD+DG+G I+A L VM +LG ++ E++EMIRE D +G G I++
Sbjct: 79 QDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINY 138
Query: 67 PHFLELMMKK 76
F+ +M+ K
Sbjct: 139 EEFVRMMVSK 148
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 109 bits (275), Expect = 1e-33
Identities = 28/76 (36%), Positives = 48/76 (63%)
Query: 1 MDSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEG 60
LT ++ +++EAF LFDKD +TA+ LG VMR+LG NP++ ++ E++++ D +
Sbjct: 4 QKKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDN 63
Query: 61 KGIIDFPHFLELMMKK 76
G D FL +M++
Sbjct: 64 SGKFDQETFLTIMLEY 79
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 109 bits (274), Expect = 2e-33
Identities = 36/76 (47%), Positives = 54/76 (71%)
Query: 1 MDSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEG 60
+FL+E+ + +F+ AF +FD DG G I+ K LG VMR LG+NP++ EL+ +I EVD +G
Sbjct: 10 ARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDG 69
Query: 61 KGIIDFPHFLELMMKK 76
G IDF FL +M+++
Sbjct: 70 SGTIDFEEFLVMMVRQ 85
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 111 bits (281), Expect = 2e-33
Identities = 50/76 (65%), Positives = 61/76 (80%)
Query: 1 MDSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEG 60
M LTE+Q+ +F+EAFSLFDKDG GTIT K LG VMRSLG+NP+EAEL++MI EVD +G
Sbjct: 1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 60
Query: 61 KGIIDFPHFLELMMKK 76
G IDFP FL +M +K
Sbjct: 61 NGTIDFPEFLTMMARK 76
Score = 80.3 bits (199), Expect = 5e-21
Identities = 30/70 (42%), Positives = 46/70 (65%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDF 66
D + REAF +FDKDG+G I+A L VM +LG ++ E++EMIRE D +G G +++
Sbjct: 80 TDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY 139
Query: 67 PHFLELMMKK 76
F+++M K
Sbjct: 140 EEFVQMMTAK 149
Score = 32.5 bits (75), Expect = 0.006
Identities = 2/18 (11%), Positives = 2/18 (11%)
Query: 12 DFREAFSLFDKDGSGTIT 29
R K
Sbjct: 161 VIRNKIRAIGKMARVFSV 178
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 110 bits (278), Expect = 3e-33
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 1 MDSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEG 60
MD L +++ + REAF FDKD G I + LG MR++G P+E EL E+ ++++
Sbjct: 1 MDRSLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNL 60
Query: 61 KGIIDFPHFLELMMKKV 77
G +DF F+ELM K+
Sbjct: 61 GGHVDFDDFVELMGPKL 77
Score = 70.3 bits (173), Expect = 2e-17
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRS-LGRNPSEAELEEMIREVDPEGKGIID 65
V + R+AF FD +G G I+ L MR+ LG ++EE+IR+VD G G +D
Sbjct: 84 MIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVD 143
Query: 66 FPHFLELMMK 75
F F+ +M +
Sbjct: 144 FEEFVRMMSR 153
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 107 bits (269), Expect = 6e-33
Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGII 64
L+E+Q + +EAF LFD + +G+I L + MR+LG + + E+ E++ E D EG G I
Sbjct: 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYI 60
Query: 65 DFPHFLELMMKKV 77
F FL++M +K+
Sbjct: 61 GFDDFLDIMTEKI 73
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium
binding, ME binding protein-toxin complex; 2.20A
{Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 109 bits (276), Expect = 9e-33
Identities = 39/72 (54%), Positives = 50/72 (69%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGII 64
LTE+Q + REAF LFD DGSGTI AK L + MR+LG P + E+++MI E+D +G G I
Sbjct: 22 LTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTI 81
Query: 65 DFPHFLELMMKK 76
DF FL +M K
Sbjct: 82 DFEEFLTMMTAK 93
Score = 78.4 bits (194), Expect = 2e-20
Identities = 31/70 (44%), Positives = 38/70 (54%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDF 66
D + +AF LFD D SGTIT K L V + LG N +E EL+EMI E D ID
Sbjct: 97 RDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDE 156
Query: 67 PHFLELMMKK 76
F+ +M K
Sbjct: 157 DEFIRIMKKT 166
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus}
SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C
1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A
1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 108 bits (273), Expect = 2e-32
Identities = 36/77 (46%), Positives = 55/77 (71%)
Query: 1 MDSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEG 60
+FL+E+ + +F+ AF +FD DG G I+ K LG VMR LG+NP++ EL+ +I EVD +G
Sbjct: 10 ARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDG 69
Query: 61 KGIIDFPHFLELMMKKV 77
G IDF FL +M++++
Sbjct: 70 SGTIDFEEFLVMMVRQM 86
Score = 76.5 bits (189), Expect = 9e-20
Identities = 20/68 (29%), Positives = 38/68 (55%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDF 66
+ F +FDK+ G I + LG ++R+ G + +E ++E+++++ D G IDF
Sbjct: 92 GKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDF 151
Query: 67 PHFLELMM 74
FL++M
Sbjct: 152 DEFLKMME 159
>3fwb_A Cell division control protein 31; gene gating, complex, cell
cycle, cell division, mitosis, MR transport, nuclear
pore complex, nucleus, phosphoprotein; 2.50A
{Saccharomyces cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 108 bits (273), Expect = 2e-32
Identities = 25/77 (32%), Positives = 45/77 (58%)
Query: 1 MDSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEG 60
++S L E+Q + EAFSLFD + G + L + M++LG + E+ ++I E D EG
Sbjct: 13 LNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEG 72
Query: 61 KGIIDFPHFLELMMKKV 77
+ ++ + F +M +K+
Sbjct: 73 RHLMKYDDFYIVMGEKI 89
Score = 78.0 bits (193), Expect = 2e-20
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDF 66
D +++ + AF LFD D +G I+ K+L V + LG ++ EL MI E D +G G I+
Sbjct: 92 RDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEINE 151
Query: 67 PHFLELMMK 75
F+ +
Sbjct: 152 NEFIAICTD 160
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 107 bits (271), Expect = 3e-32
Identities = 35/71 (49%), Positives = 49/71 (69%)
Query: 6 TEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIID 65
TE+Q + REAF LFD DG+GTI K L + MR+LG P + E+++MI E+D EG G ++
Sbjct: 1 TEEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMN 60
Query: 66 FPHFLELMMKK 76
F FL +M +K
Sbjct: 61 FGDFLTVMTQK 71
Score = 76.4 bits (189), Expect = 7e-20
Identities = 28/69 (40%), Positives = 41/69 (59%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDF 66
+D + +AF LFD D +G I+ K+L V + LG N ++ EL+EMI E D +G G +
Sbjct: 75 KDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSE 134
Query: 67 PHFLELMMK 75
FL +M K
Sbjct: 135 QEFLRIMKK 143
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 106 bits (266), Expect = 1e-31
Identities = 29/70 (41%), Positives = 41/70 (58%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDF 66
+DQV++F+EAF LFD + +G IT + L V++ G A EM E D G G I F
Sbjct: 2 DDQVSEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQF 61
Query: 67 PHFLELMMKK 76
P FL +M ++
Sbjct: 62 PEFLSMMGRR 71
Score = 69.8 bits (172), Expect = 2e-17
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDF 66
+ R+AF FD +G+G I L + +LG E E + + KG I +
Sbjct: 75 TTSEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGITE-TEKGQIRY 133
Query: 67 PHFLELMM 74
+F+ M
Sbjct: 134 DNFINTMF 141
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 105 bits (264), Expect = 4e-31
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPE--GKG 62
++ +DF+EAF LFD+ G ITA +G + R+LG+NP+ AE+ +++ E
Sbjct: 2 FSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAA 61
Query: 63 IIDFPHFLELMMKK 76
I F FL ++
Sbjct: 62 AITFEEFLPMLQAA 75
Score = 71.0 bits (175), Expect = 8e-18
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 12 DFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLE 71
DF E +FDK+G+GT+ L V+ +LG +E E+EE+++ + + G I++ F++
Sbjct: 86 DFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKGQE-DSNGCINYEAFVK 144
Query: 72 LMM 74
+M
Sbjct: 145 HIM 147
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET:
BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A
1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T*
1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C*
2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 103 bits (259), Expect = 2e-30
Identities = 36/78 (46%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 1 MDSFLTEDQVNDFREAFSLFDKDG-SGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPE 59
LTE+Q N+F+ AF +F G+I+ K LG VMR LG+NP+ EL+EMI EVD +
Sbjct: 8 AVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDED 67
Query: 60 GKGIIDFPHFLELMMKKV 77
G G +DF FL +M++ +
Sbjct: 68 GSGTVDFDEFLVMMVRSM 85
Score = 74.9 bits (185), Expect = 3e-19
Identities = 20/63 (31%), Positives = 37/63 (58%)
Query: 12 DFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLE 71
+ + F +FDK+ G I + L I++++ G +E ++EE++++ D G ID+ FLE
Sbjct: 96 ELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLE 155
Query: 72 LMM 74
M
Sbjct: 156 FMK 158
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 102 bits (256), Expect = 7e-30
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 1 MDSFLTEDQVNDFREAFSLFDK-DGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPE 59
S L+ +QV AF F+ +GSG ++ +GI++ LG +++ + ++I E DP
Sbjct: 3 DVSKLSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPF 62
Query: 60 GKGIIDFPHFLELMMKKV 77
G G IDF F + + +
Sbjct: 63 GNGDIDFDSFKIIGARFL 80
Score = 78.4 bits (194), Expect = 2e-20
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDF 66
E + REAF L+DK+G+G I+ + ++ L S +L+ MI E+D +G G +DF
Sbjct: 87 EQMQQELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDF 146
Query: 67 PHFLELMMK 75
F+ +M
Sbjct: 147 EEFMGVMTG 155
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 102 bits (256), Expect = 9e-30
Identities = 20/76 (26%), Positives = 42/76 (55%)
Query: 1 MDSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEG 60
+ L+E+++ +E F++ D D SG IT + L ++ +G N E+E+ ++++ D +
Sbjct: 17 IAESLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDN 76
Query: 61 KGIIDFPHFLELMMKK 76
G ID+ F+ +
Sbjct: 77 SGTIDYKEFIAATLHL 92
Score = 69.5 bits (171), Expect = 6e-17
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDF 66
++ + AF+ FDKDGSG IT L G + +EE++R+VD + G ID+
Sbjct: 95 IEREDHLFAAFTYFDKDGSGYITPDELQQACEEFG--VEDVRIEELMRDVDQDNDGRIDY 152
Query: 67 PHFLELMMK 75
F+ +M K
Sbjct: 153 NEFVAMMQK 161
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 102 bits (257), Expect = 1e-29
Identities = 20/72 (27%), Positives = 39/72 (54%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGII 64
L+E+++ +E F + D D SGTIT L ++ +G E+E+++++ D + G I
Sbjct: 4 LSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTI 63
Query: 65 DFPHFLELMMKK 76
D+ F+ +
Sbjct: 64 DYGEFIAATVHL 75
Score = 71.9 bits (177), Expect = 1e-17
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 1 MDSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEG 60
++ + AFS FDKDGSG IT + + G + +++MI+E+D +
Sbjct: 72 TVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDFG--LDDIHIDDMIKEIDQDN 129
Query: 61 KGIIDFPHFLELMMKK 76
G ID+ F +M K+
Sbjct: 130 DGQIDYGEFAAMMRKR 145
Score = 29.9 bits (68), Expect = 0.041
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 6 TEDQVNDFREAFSLFDKDGSGTITAK 31
T + + R+A L D + I
Sbjct: 155 TMRKTLNLRDALGLVDNGSNQVIEGY 180
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 99.1 bits (248), Expect = 1e-29
Identities = 21/74 (28%), Positives = 40/74 (54%)
Query: 1 MDSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEG 60
M L+E+++ +E F + D D SGTIT L ++ +G E+E+++++ D +
Sbjct: 13 MAERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDK 72
Query: 61 KGIIDFPHFLELMM 74
G ID+ F+ +
Sbjct: 73 SGTIDYGEFIAATV 86
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 99.7 bits (249), Expect = 1e-29
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGII 64
++ F+E + FD +G+G I L ++ LG + EL+++I EV
Sbjct: 26 DLPSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETF 85
Query: 65 DFPHFLELMMKK 76
+P FL +M+ K
Sbjct: 86 SYPDFLRMMLGK 97
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer,
domain-swapping, EF-hand; 1.75A {Chenopodium album}
SCOP: a.39.1.10 PDB: 1h4b_A
Length = 86
Score = 98.9 bits (247), Expect = 2e-29
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 1 MDSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEG 60
M + T + D F FD +G G I++ LG +++LG + + E+ M+ E+D +G
Sbjct: 1 MAAEDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLG-SVTPDEVRRMMAEIDTDG 59
Query: 61 KGIIDFPHFLELMMKK 76
G I F F +
Sbjct: 60 DGFISFDEFTDFARAN 75
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle;
rigor-like, squid, contractIle protein; 2.60A
{Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B*
3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 101 bits (253), Expect = 2e-29
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGII 64
L++ Q+ + +EAF++ D+D G I + L + SLGR P + EL M++E G +
Sbjct: 10 LSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECP----GQL 65
Query: 65 DFPHFLELMMKK 76
+F FL L +K
Sbjct: 66 NFTAFLTLFGEK 77
Score = 68.7 bits (169), Expect = 7e-17
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDF 66
D + R AFS+FD+DG G I +L ++ ++G N S+ E++ + ++ + ++
Sbjct: 81 TDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPLK-NKQFNY 139
Query: 67 PHFLELMMKK 76
+++ K
Sbjct: 140 NKMVDIKGKA 149
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 106 bits (267), Expect = 2e-29
Identities = 49/76 (64%), Positives = 60/76 (78%)
Query: 1 MDSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEG 60
LTE+Q+ +F+EAFSLFDKDG GTIT K LG VMRSLG+NP+EAEL++MI EVD +G
Sbjct: 302 TRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 361
Query: 61 KGIIDFPHFLELMMKK 76
G IDFP FL +M +K
Sbjct: 362 NGTIDFPEFLTMMARK 377
Score = 83.8 bits (207), Expect = 4e-21
Identities = 30/70 (42%), Positives = 46/70 (65%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDF 66
D + REAF +FDKDG+G I+A L VM +LG ++ E++EMIRE D +G G +++
Sbjct: 381 TDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY 440
Query: 67 PHFLELMMKK 76
F+++M K
Sbjct: 441 EEFVQMMTAK 450
Score = 50.7 bits (121), Expect = 3e-09
Identities = 10/73 (13%), Positives = 22/73 (30%), Gaps = 15/73 (20%)
Query: 4 FLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGI 63
F + + ++F KD T + ++ ++ +G
Sbjct: 240 FFKSAMPEGYIQERTIFFKDDGNYKTRAEVKFEGD------------TLVNRIELKG--- 284
Query: 64 IDFPHFLELMMKK 76
IDF ++ K
Sbjct: 285 IDFKEDGNILGHK 297
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 100 bits (252), Expect = 2e-29
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 1 MDSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEG 60
+ + L + Q+ + +EAFS+ D D G ++ + + + LGR P + EL M++E
Sbjct: 8 VLTKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAP--- 64
Query: 61 KGIIDFPHFLELMMKK 76
G ++F FL + K
Sbjct: 65 -GPLNFTMFLSIFSDK 79
Score = 71.0 bits (175), Expect = 1e-17
Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDF 66
D R AF++FD+ + + +++ ++ ++G N ++ E+ +E EG G D+
Sbjct: 83 TDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPVEG-GKFDY 141
Query: 67 PHFLELMMKK 76
F ++
Sbjct: 142 VKFTAMIKGS 151
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 101 bits (255), Expect = 2e-29
Identities = 17/76 (22%), Positives = 39/76 (51%)
Query: 1 MDSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEG 60
+ L + ++N+ R F D D SGT++++ + ++ +G ++ +++R++D
Sbjct: 47 IAKHLCDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNA 106
Query: 61 KGIIDFPHFLELMMKK 76
G I + FL + K
Sbjct: 107 SGQIHYTDFLAATIDK 122
Score = 71.5 bits (176), Expect = 1e-17
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 14 REAFSLFDKDGSGTITAKHLGIVM--RSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLE 71
F FD DG+G I+ + L + + + ++ +++EVD G G IDF F+
Sbjct: 132 LIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEIDFHEFML 191
Query: 72 LMMKK 76
+M KK
Sbjct: 192 MMSKK 196
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin,
myosin V, chicken, molecular motor, ATPase, ELC, IQ
motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo
sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C
1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 99.6 bits (249), Expect = 6e-29
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREV--DPEGKG 62
+DQ+ +F+EAF LFD+ G G I G VMR+LG+NP+ AE+ +++ D
Sbjct: 4 FNKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSR 63
Query: 63 IIDFPHFLELMMKKV 77
+DF FL ++
Sbjct: 64 RVDFETFLPMLQAVA 78
Score = 69.9 bits (172), Expect = 3e-17
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDF 66
+ D+ E F +FDK+G+G + L V+ +LG +E E+E ++ + G I++
Sbjct: 83 QGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAG-HEDSNGCINY 141
Query: 67 PHFLELMM 74
FL+ ++
Sbjct: 142 EAFLKHIL 149
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 99.1 bits (248), Expect = 8e-29
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGII 64
+ Q+ +F+EAF++ D++ G I + L ++ S+G+NP++ LE M+ E G I
Sbjct: 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSEAP----GPI 56
Query: 65 DFPHFLELMMKK 76
+F FL + +K
Sbjct: 57 NFTMFLTMFGEK 68
Score = 75.2 bits (186), Expect = 2e-19
Identities = 20/69 (28%), Positives = 37/69 (53%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDF 66
D + R AF+ FD++ SG I HL ++ ++G ++ E++EM RE + KG ++
Sbjct: 72 TDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNY 131
Query: 67 PHFLELMMK 75
F ++
Sbjct: 132 VEFTRILKH 140
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 100 bits (251), Expect = 1e-28
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 1 MDSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEG 60
+ + T+ QV +F+EAF L D+D G I+ + SLGR +E EL+ M+ E
Sbjct: 47 VFAMFTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAEAP--- 103
Query: 61 KGIIDFPHFLELMMKKV 77
G I+F FL + ++
Sbjct: 104 -GPINFTMFLTIFGDRI 119
Score = 70.8 bits (174), Expect = 3e-17
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDF 66
D+ + AF+LFD +G G + L + + G S+ E+++ + E +G G+ID
Sbjct: 122 TDEEDVIVNAFNLFD-EGDGKCKEETLKRSLTTWGEKFSQDEVDQALSEAPIDGNGLIDI 180
Query: 67 PHFLELMMKK 76
F +++ K
Sbjct: 181 KKFAQILTKG 190
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 98.8 bits (247), Expect = 2e-28
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 5 LTEDQVNDFREAFSLFD--KDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKG 62
L++D+++D ++ F LFD G + A LG V R LG NP ++ + G+
Sbjct: 3 LSQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDV-FAVGGTHKMGEK 61
Query: 63 IIDFPHFLELMMKK 76
+ F FL
Sbjct: 62 SLPFEEFLPAYEGL 75
Score = 75.7 bits (187), Expect = 2e-19
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPE--GKGII 64
+ D+ EAF FD++G G I+ L V+ +LG S+ +++E+I+ D + +G +
Sbjct: 80 QGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNV 139
Query: 65 DFPHFLELMMKK 76
+ F++ +M
Sbjct: 140 KYEDFVKKVMAG 151
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 97.7 bits (244), Expect = 3e-28
Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGII 64
E++V++ +K G I+ + R LG PS + +++ +
Sbjct: 9 QLEEKVDESDVRIYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKIKELYG----DNL 64
Query: 65 DFPHFLELMMKK 76
+ +LE +
Sbjct: 65 TYEQYLEYLSIC 76
Score = 73.4 bits (181), Expect = 9e-19
Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDF 66
+D V + + F+ FD + +G +T + ++ + G ++ E + + E ID+
Sbjct: 80 KDNVEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAFSSEDN--IDY 137
Query: 67 PHFLELMMK 75
F E +++
Sbjct: 138 KLFCEDILQ 146
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 96.8 bits (242), Expect = 6e-28
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 8 DQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFP 67
+ +E F +FDKD G ++ + LG +RSLG+NP+ AEL + +++ + D
Sbjct: 2 ASADQIQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKE---FDLA 58
Query: 68 HFLELMMKK 76
F + K
Sbjct: 59 TFKTVYRKP 67
Score = 77.2 bits (191), Expect = 3e-20
Identities = 21/68 (30%), Positives = 42/68 (61%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDF 66
+Q + +AF DK+G+GTI L ++ +LG + +E+EE+++EV G G I++
Sbjct: 72 TEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAINY 131
Query: 67 PHFLELMM 74
F+++++
Sbjct: 132 ESFVDMLV 139
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin
regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 96.9 bits (242), Expect = 9e-28
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 3 SFLTEDQVNDFREAFSLFD--KDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEG 60
S LT+D++ + RE F LFD G + A +G ++R LG NP+EA++ + G
Sbjct: 1 SQLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHG-GTKKMG 59
Query: 61 KGIIDFPHFLELMMKK 76
+ L + +
Sbjct: 60 EKAYKLEEILPIYEEM 75
Score = 74.5 bits (184), Expect = 5e-19
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPE--GKGII 64
++F EAF FD++G G I++ + V++ LG +E + ++ D G I
Sbjct: 81 GTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNI 140
Query: 65 DFPHFLELMMKK 76
+ ++ +M
Sbjct: 141 KYEDLMKKVMAG 152
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 95.0 bits (237), Expect = 3e-27
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 9 QVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIR-EVDPEGKGIIDFP 67
++ F+LFDK G G I LG +R++G NP+ ++++I + +
Sbjct: 2 ATRANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLD 61
Query: 68 HFLELMMKK 76
L+
Sbjct: 62 QITGLIEVN 70
Score = 79.6 bits (197), Expect = 4e-21
Identities = 20/65 (30%), Positives = 43/65 (66%)
Query: 12 DFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLE 71
DF +AF +FDK+ +G ++ L ++ LG ++AE++E+++ V+ + G ID+ F+E
Sbjct: 84 DFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIE 143
Query: 72 LMMKK 76
++++
Sbjct: 144 DVLRQ 148
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 94.2 bits (235), Expect = 1e-26
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 1 MDSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGR-NPSEAELEEMIREVDPE 59
+ S E ++ DF+EAF++ D++ G I L ++GR N EL+ MI+ E
Sbjct: 15 VFSMFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIK----E 70
Query: 60 GKGIIDFPHFLELMMKK 76
G I+F FL + +K
Sbjct: 71 ASGPINFTVFLTMFGEK 87
Score = 76.1 bits (188), Expect = 1e-19
Identities = 15/70 (21%), Positives = 30/70 (42%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDF 66
D + AF + D DG G+I L ++ + G + E++ M P+ G +D+
Sbjct: 91 ADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDY 150
Query: 67 PHFLELMMKK 76
+ ++
Sbjct: 151 KNICYVITHG 160
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 93.8 bits (233), Expect = 1e-26
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGII 64
+++ F+E + FD + G I L +M LG + E+++MI EV I
Sbjct: 44 NLPEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTI 103
Query: 65 DFPHFLELMMKK 76
+ F+ +M+ K
Sbjct: 104 SYRDFVNMMLGK 115
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand;
NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 93.0 bits (232), Expect = 2e-26
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 8 DQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFP 67
+ +++AFSLFD+ G+G I +G ++R+ G+NP+ AE I E++ +D
Sbjct: 2 TDDSPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAE----ITEIESTLPAEVDME 57
Query: 68 HFLELMMKKV 77
FL+++ +
Sbjct: 58 QFLQVLNRPN 67
Score = 71.8 bits (177), Expect = 4e-18
Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDF 66
+F + F +FDKD +G I L V+ SLG S E++E+++ V + G++++
Sbjct: 72 PGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNY 130
Query: 67 PHFLELMM 74
F+++++
Sbjct: 131 HDFVQMIL 138
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 88.8 bits (221), Expect = 2e-25
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 4 FLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNP-SEAELEEMIREVDPEGKG 62
++ +D + AF +FD +G G I +M+ +G P ++AE+EE ++E D +G G
Sbjct: 1 WVRQDDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNG 60
Query: 63 IIDFPHFLELMMKK 76
+ID P F++L+ K
Sbjct: 61 VIDIPEFMDLIKKS 74
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 87.9 bits (219), Expect = 2e-25
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDF 66
+ D + AF FD+DG G IT L M LG+ + EL+ MIRE D + G +++
Sbjct: 2 RAGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNY 61
Query: 67 PHFLELMMKK 76
F ++ ++
Sbjct: 62 EEFARMLAQE 71
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 90.8 bits (226), Expect = 4e-25
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 1 MDSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEG 60
+ + V + F + D+DG G IT + L + G + ++ ++D +G
Sbjct: 42 IAQQSNDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDG-LKLPYNFDLLLDQIDSDG 100
Query: 61 KGIIDFPHFLELMMKK 76
G ID+ F+ + +
Sbjct: 101 SGKIDYTEFIAAALDR 116
Score = 65.7 bits (161), Expect = 2e-15
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 8 DQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPS-----EAELEEMIREVDPEGKG 62
AF +FD D G IT L ++ + + + ++ MIR+VD G
Sbjct: 119 LSKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDG 178
Query: 63 IIDFPHFLELM 73
IDF F E+M
Sbjct: 179 KIDFHEFSEMM 189
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 87.7 bits (218), Expect = 5e-25
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 4 FLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGI 63
+ D + +EAF +FDKD +G I+A L VM +LG ++ E+E+MI+E D +G G
Sbjct: 2 HMDTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQ 61
Query: 64 IDFPHFLELMMKK 76
+++ F+++MM
Sbjct: 62 VNYEEFVKMMMTV 74
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major}
SCOP: a.39.1.8
Length = 191
Score = 89.7 bits (223), Expect = 1e-24
Identities = 21/74 (28%), Positives = 29/74 (39%)
Query: 3 SFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKG 62
S + + E F D DGSG I+ L + S G S A E+++ D G
Sbjct: 19 SARHMNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSG 78
Query: 63 IIDFPHFLELMMKK 76
I F F +L
Sbjct: 79 EITFDEFKDLHHFI 92
Score = 73.5 bits (181), Expect = 3e-18
Identities = 16/67 (23%), Positives = 31/67 (46%)
Query: 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHF 69
+ RE F D G G + + + + S G SE + ++R+ D + +G + F +
Sbjct: 92 ILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDY 151
Query: 70 LELMMKK 76
+EL +
Sbjct: 152 VELSIFV 158
Score = 30.7 bits (70), Expect = 0.021
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 9 QVNDFREAFSLFDKDGSGTIT 29
V R F+ +D++ +G +T
Sbjct: 157 FVCRVRNVFAFYDRERTGQVT 177
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix,
structural genomics, protein structure initiative; NMR
{Arabidopsis thaliana} SCOP: a.39.1.5
Length = 67
Score = 85.2 bits (212), Expect = 3e-24
Identities = 12/65 (18%), Positives = 27/65 (41%)
Query: 12 DFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLE 71
+ F FDK+ G ++ V + ++ ++ + E+D +G G ++ F
Sbjct: 2 SAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTS 61
Query: 72 LMMKK 76
+ K
Sbjct: 62 CIEKM 66
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 89.0 bits (221), Expect = 3e-24
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 10/85 (11%)
Query: 3 SFLTEDQVNDFREAFSLFDKDGSGTITAKHL-----GIVMRSLGRNPSEAELEEMIREVD 57
F + + F D +G+G IT + + L P + + ++ E
Sbjct: 12 DFDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAF 71
Query: 58 PEGKGI-----IDFPHFLELMMKKV 77
G G+ I FP FL+ +
Sbjct: 72 FRGCGMEYGKEIAFPQFLDGWKQLA 96
Score = 75.9 bits (187), Expect = 3e-19
Identities = 19/70 (27%), Positives = 27/70 (38%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDF 66
F +FDKDGSGTIT + G +PS+ + E R D + G +D
Sbjct: 109 TLIREWGDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDV 168
Query: 67 PHFLELMMKK 76
+
Sbjct: 169 DEMTRQHLGF 178
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 86.8 bits (216), Expect = 4e-24
Identities = 12/63 (19%), Positives = 25/63 (39%)
Query: 14 REAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELM 73
F D +G G ++ + + + +E L+ + + +D +G G ID F +
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFY 62
Query: 74 MKK 76
Sbjct: 63 GSI 65
Score = 67.6 bits (166), Expect = 1e-16
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 6 TEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIID 65
D + + L D DG G +T + + + G ++ E + + D G G I
Sbjct: 70 LSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHG----IEKVAEQVMKADANGDGYIT 125
Query: 66 FPHFLELMM 74
FLE +
Sbjct: 126 LEEFLEFSL 134
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 83.1 bits (206), Expect = 5e-23
Identities = 29/70 (41%), Positives = 45/70 (64%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDF 66
D + REAF + DKDG+G I+A L VM +LG ++ E++EMIRE D +G G +++
Sbjct: 25 TDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY 84
Query: 67 PHFLELMMKK 76
F+++M K
Sbjct: 85 EEFVQMMTAK 94
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 82.2 bits (204), Expect = 5e-23
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 11 NDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFL 70
+D F FD +G G I+ L +R+LG ++ E++ M+ E+D +G G IDF F+
Sbjct: 3 DDMERIFKRFDTNGDGKISLSELTDALRTLGSTSAD-EVQRMMAEIDTDGDGFIDFNEFI 61
Query: 71 ELMMKK 76
Sbjct: 62 SFCNAN 67
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 84.2 bits (208), Expect = 6e-23
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGII 64
++ F+ + FD +G+G I L ++ LG + EL+ +IREV +
Sbjct: 42 DLPSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETF 101
Query: 65 DFPHFLELMMKK 76
+ FL +M+ K
Sbjct: 102 SYSDFLRMMLGK 113
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 85.5 bits (212), Expect = 8e-23
Identities = 18/72 (25%), Positives = 28/72 (38%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGII 64
+ F D+DGS ++ A + LG +AE E + R+ D G G +
Sbjct: 31 RGASGIQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTL 90
Query: 65 DFPHFLELMMKK 76
D FL +
Sbjct: 91 DLEEFLRALRPP 102
Score = 55.8 bits (135), Expect = 1e-11
Identities = 14/79 (17%), Positives = 23/79 (29%), Gaps = 9/79 (11%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHL-------GIVMRSLGRNPSEAELEEMIREVDP- 58
+ + AF+ D+ G G +T L G + L + D
Sbjct: 105 QAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSS 164
Query: 59 EGKGIIDFPHFLELMMKKV 77
E G + F + V
Sbjct: 165 EKDGQVTLAEFQD-YYSGV 182
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 84.6 bits (210), Expect = 1e-22
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 2 DSFLTEDQVNDFREAFSLFDKDGSGTITAKHL-----------GIVMRSLGRNPSEAELE 50
T ++ + + F D +G G + K L G + L + EAE++
Sbjct: 31 SKLTTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVD 90
Query: 51 EMIREVDPEGKGIIDFPHFLELMMKK 76
+++ VD + G I++ F+ + M K
Sbjct: 91 HILQSVDFDRNGYIEYSEFVTVCMDK 116
Score = 65.0 bits (159), Expect = 4e-15
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDF 66
AF FD DGSG IT + LG + + ++++E D G +DF
Sbjct: 119 LLSRERLLAAFQQFDSDGSGKITNEELGRLFGVTE--VDDETWHQVLQECDKNNDGEVDF 176
Query: 67 PHFLELMMK 75
F+E+M K
Sbjct: 177 EEFVEMMQK 185
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 83.7 bits (207), Expect = 2e-21
Identities = 15/72 (20%), Positives = 30/72 (41%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGII 64
L+E+ N R+ F GSG + + L V+ E L+++ V+ + KG +
Sbjct: 116 LSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRM 175
Query: 65 DFPHFLELMMKK 76
+ + +
Sbjct: 176 SYITLVAVANDL 187
Score = 67.1 bits (164), Expect = 3e-15
Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 9 QVNDFREAFSLFDKDGSGTITAKHLGIVMRSLG-RNPSEAELEEMIREVDPEGKGIIDFP 67
+ R ++ D D SG ++ + + V+ + + E VD + + +
Sbjct: 251 CLLVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQ 310
Query: 68 HFLELMMKKV 77
F+ L++
Sbjct: 311 EFVMLVLLMF 320
Score = 65.6 bits (160), Expect = 1e-14
Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 8 DQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFP 67
+ + F D + +GT++ K LG + ++ + + R D + + F
Sbjct: 185 NDLAALVADFRKIDTNSNGTLSRKEFREHFVRLGFD-KKSVQDALFRYADEDESDDVGFS 243
Query: 68 HFLELMMKK 76
++ L +
Sbjct: 244 EYVHLGLCL 252
Score = 36.3 bits (84), Expect = 3e-04
Identities = 7/71 (9%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 6 TEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEA---ELEEMIREVDPEGKG 62
+ + + + +D+ A+ R R + A L ++++++ + G
Sbjct: 46 IAQKEQEQKAKLAEYDQKVQNEFDARERAEREREAARGDAAAEKQRLASLLKDLEDDASG 105
Query: 63 IIDFPHFLELM 73
++
Sbjct: 106 YNRLRPSKPML 116
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent
protein; HET: CZN; 1.60A {Aequorea victoria} SCOP:
a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 80.6 bits (199), Expect = 4e-21
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 4 FLTEDQVNDFREAFSLFDKDGSGTITAKHL-----GIVMRSLGRNPSEAELEEMIREVDP 58
F + + F+ D + +G I+ + IV+ +LG P +A+ + E
Sbjct: 9 FDNPRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFF 68
Query: 59 EGKGI-----IDFPHFLELMMKK 76
G G+ D+P ++E K
Sbjct: 69 GGAGMKYGVETDWPAYIEGWKKL 91
Score = 69.1 bits (169), Expect = 1e-16
Identities = 15/70 (21%), Positives = 23/70 (32%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDF 66
F + DKD +G IT ++ G S + EE R D + G +D
Sbjct: 105 TLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDV 164
Query: 67 PHFLELMMKK 76
+
Sbjct: 165 DEMTRQHLGF 174
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 76.1 bits (188), Expect = 2e-20
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPS------EAELEEMIREVDP 58
+ + AF D +G G +TA L M +L + + ++I+ D
Sbjct: 1 MACKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADK 60
Query: 59 EGKGIIDFPHFLELMMKKV 77
G I FL + +
Sbjct: 61 NSDGKISKEEFLNANAELL 79
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 78.9 bits (195), Expect = 2e-20
Identities = 11/72 (15%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGII 64
+ + + E F D + +G+++ + + V+ S+G + ++ +++ +D +G I
Sbjct: 33 VINNHIKYINELFYKLDTNHNGSLSHREIYTVLASVGI--KKWDINRILQALDINDRGNI 90
Query: 65 DFPHFLELMMKK 76
+ F+ +
Sbjct: 91 TYTEFMAGCYRW 102
Score = 60.0 bits (146), Expect = 3e-13
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 14 REAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGI--------ID 65
+ AF+ DKD G I+ + ++ + +++ V KGI I
Sbjct: 111 KAAFNKIDKDEDGYISKSDIVSLVH--DKVLDNNDIDNFFLSVHSIKKGIPREHIINKIS 168
Query: 66 FPHFLELMMKK 76
F F + M+
Sbjct: 169 FQEFKDYMLST 179
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 78.4 bits (193), Expect = 1e-19
Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEA------ELEEMIREVDP 58
+ + F E + FD DGSG + K L +++ L + +A E++ + +
Sbjct: 10 SSLITASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQ 69
Query: 59 EGKGIIDFPHFLELMMKK 76
G I ++ +
Sbjct: 70 RDDGKIGIVELAHVLPTE 87
Score = 63.4 bits (154), Expect = 5e-14
Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
Query: 6 TEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEA--------ELEEMIREVD 57
+F + + +D D SG I + L ++ L ++ + M++ D
Sbjct: 98 QLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFD 157
Query: 58 PEGKGIIDFPHFLELMMKK 76
G ++ L+ +
Sbjct: 158 SNNDGKLELTEMARLLPVQ 176
Score = 51.8 bits (124), Expect = 8e-10
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 6 TEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIRE-----VDPEG 60
+ +F +AF L+D+DG+G I L +++ L + I +
Sbjct: 186 IKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQELDINNISTYKKNIMALSD 245
Query: 61 KGIIDFPHFLELMMKK 76
G + ++
Sbjct: 246 GGKLYRTDLALILSAG 261
Score = 26.0 bits (57), Expect = 1.2
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 8/70 (11%)
Query: 12 DFREAFSLFDKDGSGTIT--------AKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGI 63
LFD + G + +++ G E + D +G G
Sbjct: 148 YTDLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGY 207
Query: 64 IDFPHFLELM 73
ID L+
Sbjct: 208 IDENELDALL 217
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 76.1 bits (188), Expect = 2e-19
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 9 QVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNP-SEAELEEMIREVDPEGKGIIDFP 67
+ F DKD SG I+ L + + P + + +I D E K ++F
Sbjct: 5 DQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFS 64
Query: 68 HFLELMMKK 76
F +
Sbjct: 65 EFTGVWKYI 73
Score = 70.7 bits (174), Expect = 2e-17
Identities = 18/67 (26%), Positives = 33/67 (49%)
Query: 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHF 69
+ D++ F +D+D SG I L + G S+ + +IR+ D +G+G I F F
Sbjct: 73 ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDF 132
Query: 70 LELMMKK 76
++ +
Sbjct: 133 IQGCIVL 139
Score = 29.9 bits (68), Expect = 0.037
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 9 QVNDFREAFSLFDKDGSGTIT 29
+ + F +D D G I
Sbjct: 138 VLQRLTDIFRRYDTDQDGWIQ 158
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 75.3 bits (186), Expect = 2e-19
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDF 66
D++ + F D D SG+++ + + L +NP ++ +I D +G G +DF
Sbjct: 2 ADEIKRLGKRFKKLDLDNSGSLSVEEFM-SLPELQQNP---LVQRVIDIFDTDGNGEVDF 57
Query: 67 PHFLELMMKK 76
F+E + +
Sbjct: 58 KEFIEGVSQF 67
Score = 56.1 bits (136), Expect = 6e-12
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 14 REAFSLFDKDGSGTITAKHLGIVMRSL-GRNPSEAELE----EMIREVDPEGKGIIDFPH 68
R AF ++D D G I+ L V++ + G N + +L+ + I D +G G I F
Sbjct: 78 RFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEE 137
Query: 69 FLELMMK 75
F ++
Sbjct: 138 FCAVVGG 144
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 71.2 bits (175), Expect = 3e-18
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSL---GRNPSEAELEEMIREVDPEGK 61
+++ + +E F + D D SG I L ++ R + +E + + D +G
Sbjct: 35 MSKKSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGD 94
Query: 62 GIIDFPHFLELMM 74
G I F E++
Sbjct: 95 GKIGAEEFQEMVQ 107
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous
protein, calcium-binding protein, NHE1 regulating
protein; 2.70A {Homo sapiens}
Length = 202
Score = 73.3 bits (180), Expect = 3e-18
Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 2 DSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGK 61
++ ++ + F D++ G ++ L + +L NP + +I P+G
Sbjct: 20 ETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQ-QIGALAVNP---LGDRIIESFFPDGS 75
Query: 62 GIIDFPHFLELMMKK 76
+DFP F+ ++
Sbjct: 76 QRVDFPGFVRVLAHF 90
Score = 59.4 bits (144), Expect = 8e-13
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSL-GRNPSEAELE----EMIREVDPEGK 61
+ N AF L+D D G I+ + V+R + G +E +LE ++E D +G
Sbjct: 110 NSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGD 169
Query: 62 GIIDFPHFLELMMK 75
G + F F + + K
Sbjct: 170 GAVSFVEFTKSLEK 183
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 70.1 bits (172), Expect = 5e-18
Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGII 64
+++ R F+ D + SG + + + L P+ + E + + +D + G I
Sbjct: 21 GDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPA--DAEAVFQRLDADRDGAI 78
Query: 65 DFPHFLELMMK 75
F F +
Sbjct: 79 TFQEFARGFLG 89
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 70.4 bits (173), Expect = 5e-18
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSL---GRNPSEAELEEMIREVDPEGK 61
L++ + ++ F D D SG + L ++ R +E+E + ++ D +G
Sbjct: 35 LSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGD 94
Query: 62 GIIDFPHFLELMM 74
G I F E++
Sbjct: 95 GKIGADEFQEMVH 107
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 69.9 bits (172), Expect = 1e-17
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 11 NDFREAFSLFDKDGSGTITAKHLGIVMRSL---GRNPSEAELEEMIREVDPEGKGIIDFP 67
ND ++ F D D SG I + L V++S GR+ ++AE + ++ D +G G I
Sbjct: 42 NDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGID 101
Query: 68 HFLELMMK 75
F L+ +
Sbjct: 102 EFETLVHE 109
Score = 32.9 bits (76), Expect = 0.002
Identities = 5/38 (13%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 39 SLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMKK 76
+ ++++ + V +G + F L+ K
Sbjct: 2 AAKDLLKADDIKKALDAVK--AEGSFNHKKFFALVGLK 37
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 72.2 bits (177), Expect = 1e-17
Identities = 8/82 (9%), Positives = 19/82 (23%), Gaps = 9/82 (10%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRN---------PSEAELEEMIRE 55
L ++ + F FD D G + + + + +
Sbjct: 30 LHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLH 89
Query: 56 VDPEGKGIIDFPHFLELMMKKV 77
E + ++E
Sbjct: 90 KGVEPVNGLLREDWVEANRVFA 111
Score = 59.8 bits (145), Expect = 5e-13
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDF 66
+ + D DG GT+ L +M++ + + D + G ++
Sbjct: 124 SLIALLSNSYYDVLDDDGDGTVDVDELKTMMKAFD--VPQEAAYTFFEKADTDKSGKLER 181
Query: 67 PHFLELMMK 75
+ L K
Sbjct: 182 TELVHLFRK 190
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 68.5 bits (168), Expect = 4e-17
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSL---GRNPSEAELEEMIREVDPEGK 61
L + +D ++ F + DKD SG I LG +++ R+ S E + ++ D +G
Sbjct: 35 LKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGD 94
Query: 62 GIIDFPHFLELMMK 75
G I F L+ +
Sbjct: 95 GKIGVEEFSTLVAE 108
Score = 26.5 bits (59), Expect = 0.56
Identities = 6/38 (15%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 39 SLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMKK 76
S+ S ++++ I D F +++ K
Sbjct: 1 SMTDLLSAEDIKKAIGAFTAADS--FDHKKFFQMVGLK 36
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 70.6 bits (173), Expect = 4e-17
Identities = 18/71 (25%), Positives = 27/71 (38%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGII 64
+ DQ + F D+D SGT+ L + G S M+R D + G I
Sbjct: 45 IPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHI 104
Query: 65 DFPHFLELMMK 75
F F+ +
Sbjct: 105 SFYEFMAMYKF 115
Score = 55.9 bits (135), Expect = 2e-11
Identities = 8/66 (12%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHF 69
+ F + + SGT+ + ++ LG ++ ++ + G D +
Sbjct: 116 MELAYNLFVMNARARSGTLEPHEILPALQQLGFYINQ-RTSLLLHRLFARGMAFCDLNCW 174
Query: 70 LELMMK 75
+ +
Sbjct: 175 IAICAF 180
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 67.2 bits (165), Expect = 1e-16
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSL---GRNPSEAELEEMIREVDPEGK 61
L ++D ++AF + D+D SG I L + +++ R ++AE + + + D +G
Sbjct: 35 LASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGD 94
Query: 62 GIIDFPHFLELMM 74
G+I F ++
Sbjct: 95 GMIGVDEFAAMIK 107
Score = 28.7 bits (65), Expect = 0.092
Identities = 2/34 (5%), Positives = 7/34 (20%), Gaps = 2/34 (5%)
Query: 43 NPSEAELEEMIREVDPEGKGIIDFPHFLELMMKK 76
+A++ + F +
Sbjct: 5 GLKDADVAAALAACS--AADSFKHKEFFAKVGLA 36
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 67.8 bits (166), Expect = 1e-16
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGR-NPSEAELEEMIREVDPEGKGIID 65
E+ V++ + FSL ITA+ L LG S+ + + M+RE D +G G ++
Sbjct: 36 EEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALN 95
Query: 66 FPHFLELMMKK 76
F LM++
Sbjct: 96 QTEFCVLMVRL 106
Score = 43.9 bits (104), Expect = 2e-07
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 46 EAELEEMIREVDPEGKGIIDFPHFLELMMKKV 77
E + M+ E K + L +M +K+
Sbjct: 2 EPTEKSMLLETTSTTKMETKYEDMLPVMAEKM 33
Score = 26.1 bits (58), Expect = 0.80
Identities = 4/57 (7%), Positives = 13/57 (22%), Gaps = 1/57 (1%)
Query: 20 FDKDGSGTITAKH-LGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75
+ L ++ + +EL + + + +I
Sbjct: 12 TTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGI 68
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 66.8 bits (164), Expect = 2e-16
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 12 DFREAFSLFDKDGSGTITAKHLGIVMRSL---GRNPSEAELEEMIREVDPEGKGIIDFPH 68
+E F + DKD SG I + L V++ GR+ ++ E + ++ D + G I
Sbjct: 42 QVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADE 101
Query: 69 FLELMMK 75
F +++ +
Sbjct: 102 FAKMVAQ 108
Score = 30.6 bits (70), Expect = 0.018
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 45 SEAELEEMIREVDPEGKGIIDFPHFLELMMKK 76
++ + I G D+ F L+ K
Sbjct: 7 KADDINKAISAFK--DPGTFDYKRFFHLVGLK 36
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform
A; EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 66.3 bits (162), Expect = 2e-16
Identities = 11/72 (15%), Positives = 27/72 (37%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGII 64
+ + F FD + TI+ + + + ++ + + + E+ KG +
Sbjct: 18 AVTSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRL 77
Query: 65 DFPHFLELMMKK 76
+P FL +
Sbjct: 78 KYPDFLSRFSSE 89
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 65.0 bits (159), Expect = 8e-16
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSL---GRNPSEAELEEMIREVDPEGK 61
LT +D ++AF + D+D SG I L + ++ R ++AE + ++ D +G
Sbjct: 36 LTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGD 95
Query: 62 GIIDFPHFLELMM 74
G I + L+
Sbjct: 96 GAIGVDEWAALVK 108
Score = 33.8 bits (78), Expect = 0.001
Identities = 2/38 (5%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 39 SLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMKK 76
+ ++A++ ++ + ++ F +
Sbjct: 2 AFSGILADADVAAALKACE--AADSFNYKAFFAKVGLT 37
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 68.2 bits (166), Expect = 9e-16
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 10/85 (11%)
Query: 2 DSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLG--RNPSEAELEEMIREV--- 56
DS F + + FD D +G I K L R + P + +E ++++
Sbjct: 2 DSAFANLDAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKS 61
Query: 57 -----DPEGKGIIDFPHFLELMMKK 76
D G + +++ +
Sbjct: 62 FMSAYDATFDGRLQIEELANMILPQ 86
Score = 50.1 bits (119), Expect = 3e-09
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEA--------ELEEMIREVDP 58
D +F + + +D D SG I+A L ++ L + + M++ D
Sbjct: 100 LDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDK 159
Query: 59 EGKGIIDFPHFLELMMKK 76
G +D ++ +
Sbjct: 160 NKDGRLDLNDLARILALQ 177
Score = 47.8 bits (113), Expect = 2e-08
Identities = 11/79 (13%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 6 TEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLG----RNPSEAELEE----MIREVD 57
++ DF + F+ +D +G + + ++ + + S +L++ ++ D
Sbjct: 191 QVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHCD 250
Query: 58 PEGKGIIDFPHFLELMMKK 76
G I + K
Sbjct: 251 MNKDGKIQKSELALCLGLK 269
Score = 24.3 bits (52), Expect = 5.6
Identities = 10/72 (13%), Positives = 22/72 (30%), Gaps = 12/72 (16%)
Query: 14 REAFSLFDKDGSGTIT------------AKHLGIVMRSLGRNPSEAELEEMIREVDPEGK 61
+FDK+ G + L M + + + + E++ D
Sbjct: 151 DAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRT 210
Query: 62 GIIDFPHFLELM 73
G ++ P +
Sbjct: 211 GALEGPEVDGFV 222
Score = 23.5 bits (50), Expect = 9.2
Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 11/83 (13%)
Query: 2 DSFLTEDQVNDFREAFSLFDKDGSGTI-----------TAKHLGIVMRSLGRNPSEAELE 50
D E + S +D G + ++ ++ R + E
Sbjct: 48 DKITDERVQQIKKSFMSAYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFM 107
Query: 51 EMIREVDPEGKGIIDFPHFLELM 73
++ R+ D + G I +
Sbjct: 108 KIWRKYDADSSGYISAAELKNFL 130
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 65.9 bits (161), Expect = 1e-15
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 15/85 (17%)
Query: 8 DQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLG---------------RNPSEAELEEM 52
+ F+ FD+DG+G I +++ +EA + +
Sbjct: 1 EYERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGL 60
Query: 53 IREVDPEGKGIIDFPHFLELMMKKV 77
D +G I F+ +K++
Sbjct: 61 AGIADRDGDQRITREEFVTGAVKRL 85
Score = 62.8 bits (153), Expect = 2e-14
Identities = 12/72 (16%), Positives = 21/72 (29%), Gaps = 2/72 (2%)
Query: 2 DSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGK 61
E A + D DG G +T + + G E + +D +G
Sbjct: 89 PDRFAEMARPFLHAALGVADTDGDGAVTVADTARALTAFGV--PEDLARQAAAALDTDGD 146
Query: 62 GIIDFPHFLELM 73
G + +
Sbjct: 147 GKVGETEIVPAF 158
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 66.3 bits (162), Expect = 1e-15
Identities = 11/73 (15%), Positives = 24/73 (32%)
Query: 1 MDSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEG 60
M V + D D G ++ ++++G + ++ + +D
Sbjct: 92 MKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNK 151
Query: 61 KGIIDFPHFLELM 73
G I FL +
Sbjct: 152 NGQISRDEFLVTV 164
Score = 63.6 bits (155), Expect = 1e-14
Identities = 6/86 (6%), Positives = 20/86 (23%), Gaps = 9/86 (10%)
Query: 1 MDSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGR---------NPSEAELEE 51
+ + + D G G I+ + ++ + + + E
Sbjct: 4 ITESERAYHLRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLR 63
Query: 52 MIREVDPEGKGIIDFPHFLELMMKKV 77
+ ++ I +
Sbjct: 64 VADQLGLAPGVRISVEEAAVNATDSL 89
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 62.7 bits (153), Expect = 8e-15
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLG---RNPSEAELEEMIREVDPEGK 61
L+ + ++ F + D+D SG I + L + +++ R + AE + + D +G
Sbjct: 36 LSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGD 95
Query: 62 GIIDFPHFLELMM 74
G I F L+
Sbjct: 96 GKIGVEEFQSLVK 108
Score = 25.3 bits (56), Expect = 1.7
Identities = 3/32 (9%), Positives = 9/32 (28%), Gaps = 2/32 (6%)
Query: 45 SEAELEEMIREVDPEGKGIIDFPHFLELMMKK 76
S ++E + ++ F +
Sbjct: 8 SAKDIESALSSCQ--AADSFNYKSFFSTVGLS 37
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR
{Saccharopolyspora erythraea} SCOP: a.39.1.5
Length = 176
Score = 63.6 bits (155), Expect = 1e-14
Identities = 12/87 (13%), Positives = 30/87 (34%), Gaps = 15/87 (17%)
Query: 6 TEDQVNDFREAFSLFDKDGSGTITAKHL----GIVMRSLGRNPSEAELEE---------- 51
T + ++ F +D DG+G + + + G++ AE++
Sbjct: 2 TAIASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFD 61
Query: 52 -MIREVDPEGKGIIDFPHFLELMMKKV 77
+ +E G + F+ + +
Sbjct: 62 YLAKEAGVGSDGSLTEEQFIRVTENLI 88
Score = 61.3 bits (149), Expect = 8e-14
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGII 64
+ + DK+ G I A + +LG S+AE E +VD G G +
Sbjct: 96 FNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTALGM--SKAEAAEAFNQVDTNGNGEL 153
Query: 65 DFPHFLELM 73
L +
Sbjct: 154 SLDELLTAV 162
Score = 25.5 bits (56), Expect = 1.5
Identities = 12/77 (15%), Positives = 20/77 (25%), Gaps = 8/77 (10%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIRE--------V 56
L F G++T + V +L EA ++
Sbjct: 52 LKNAFGGLFDYLAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMC 111
Query: 57 DPEGKGIIDFPHFLELM 73
D G I+ F +
Sbjct: 112 DKNADGQINADEFAAWL 128
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 65.5 bits (160), Expect = 1e-14
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 14 REAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELM 73
AF +FDKDGSG I+ K L + + ELE +I +VD G +DF F+E++
Sbjct: 420 ERAFKMFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEML 479
Query: 74 MKKV 77
V
Sbjct: 480 QNFV 483
Score = 42.7 bits (101), Expect = 1e-06
Identities = 12/82 (14%), Positives = 27/82 (32%), Gaps = 14/82 (17%)
Query: 3 SFLTEDQVNDFREAFSLFDKDGSGTIT--------------AKHLGIVMRSLGRNPSEAE 48
T D+ E F D + G + + + E +
Sbjct: 323 KLTTLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQ 382
Query: 49 LEEMIREVDPEGKGIIDFPHFL 70
++ ++ +D +G G I++ F+
Sbjct: 383 IDSLMPLLDMDGSGSIEYSEFI 404
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 60.7 bits (148), Expect = 2e-14
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 12 DFREAFSLFD-KDG-SGTITAKHLGIVMRSLGRN--PSEAELEEMIREVDPEGKGIIDFP 67
+ + AF +F K+G I+ + L +VM++LG + + L+EMI EVD G G + F
Sbjct: 6 EIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFE 65
Query: 68 HFLELMMK 75
FL +M K
Sbjct: 66 EFLVMMKK 73
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein;
2.20A {Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 63.3 bits (154), Expect = 3e-14
Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 2 DSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGK 61
++ + Q+ F+ DK +GT++ + + L NP + +I EG+
Sbjct: 20 ETGFSHSQITRLYSRFTSLDKGENGTLSREDFQ-RIPELAINPLG---DRIINAFFSEGE 75
Query: 62 GIIDFPHFLELMMKK 76
++F F+ +
Sbjct: 76 DQVNFRGFMRTLAHF 90
Score = 50.9 bits (122), Expect = 1e-09
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 8 DQVNDFREAFSLFDKDGSGTITAKHLGIVMRSL-GRNPSEAELEE----MIREVDPEGKG 62
+ N AF L+D D I+ L V+R + G N S+ +L I+E D +G
Sbjct: 110 SRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDS 169
Query: 63 IIDFPHFLELMMK 75
I F F++++ K
Sbjct: 170 AISFTEFVKVLEK 182
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 61.1 bits (148), Expect = 2e-13
Identities = 10/70 (14%), Positives = 20/70 (28%), Gaps = 1/70 (1%)
Query: 8 DQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLG-RNPSEAELEEMIREVDPEGKGIIDF 66
+ F D G+ + + + L + + +E+D G G + F
Sbjct: 127 YDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDKNGTGSVTF 186
Query: 67 PHFLELMMKK 76
F
Sbjct: 187 DEFAAWASAV 196
Score = 60.3 bits (146), Expect = 4e-13
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 10/86 (11%)
Query: 1 MDSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGI-VMRSLGRNPSEAELEEMI------ 53
+ T + E F FDK+ +G + + + L + + + ++
Sbjct: 38 IPREKTAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDK 97
Query: 54 ---REVDPEGKGIIDFPHFLELMMKK 76
E KG DF FLE +
Sbjct: 98 SRTLGSKLENKGSEDFVEFLEFRLML 123
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 60.5 bits (147), Expect = 2e-13
Identities = 14/76 (18%), Positives = 21/76 (27%), Gaps = 5/76 (6%)
Query: 6 TEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNP-----SEAELEEMIREVDPEG 60
Q D + G I A L + G + M+ +D +
Sbjct: 27 FPGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM 86
Query: 61 KGIIDFPHFLELMMKK 76
G + F F EL
Sbjct: 87 SGTMGFNEFKELWAVL 102
Score = 57.9 bits (140), Expect = 2e-12
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 8 DQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFP 67
+N +R+ F FD D SGT+ + L + ++G S + + + GK I F
Sbjct: 100 AVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGK--ITFD 157
Query: 68 HFLELMMKK 76
++ +K
Sbjct: 158 DYIACCVKL 166
Score = 27.8 bits (62), Expect = 0.28
Identities = 3/21 (14%), Positives = 8/21 (38%)
Query: 9 QVNDFREAFSLFDKDGSGTIT 29
++ ++F D G +
Sbjct: 165 KLRALTDSFRRRDTAQQGVVN 185
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 56.8 bits (138), Expect = 5e-13
Identities = 12/60 (20%), Positives = 25/60 (41%)
Query: 14 REAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELM 73
F D +G G ++ + + + +E L+ + + +D +G G ID F +
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFY 62
Score = 26.8 bits (60), Expect = 0.29
Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 1 MDSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSL 40
+ E + + F D DG+G I S+
Sbjct: 29 KRAIKNEQLL---QLIFKSIDADGNGEIDQNEFAKFYGSI 65
Score = 23.7 bits (52), Expect = 4.4
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 49 LEEMIREVDPEGKGIIDFPHFLELMMKK 76
E + +E+D G G + + + KK
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKK 29
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2);
EF-hand, calcium-binding protein, guanylyl cyclase
regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 59.4 bits (144), Expect = 7e-13
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Query: 5 LTEDQVNDFREAFSLF-DKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGI 63
+ +E + F ++ SGT+ + + +E M R D G
Sbjct: 16 VGAADAAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNT 75
Query: 64 IDFPHFLELMMKK 76
IDF ++ +
Sbjct: 76 IDFLEYVAALNLV 88
Score = 41.3 bits (97), Expect = 4e-06
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 17/79 (21%)
Query: 14 REAFSLFDKDGSGTITAKHLGIVMRSLGRNPS-----------------EAELEEMIREV 56
+ F ++DKD +G I + L ++ S+ + E ++ + V
Sbjct: 98 KWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLV 157
Query: 57 DPEGKGIIDFPHFLELMMK 75
D G G + F+E +
Sbjct: 158 DENGDGQLSLNEFVEGARR 176
Score = 30.9 bits (70), Expect = 0.019
Identities = 14/58 (24%), Positives = 24/58 (41%)
Query: 17 FSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74
F FD +G TI + + R E +L+ + D + G ID L+++
Sbjct: 65 FRAFDTNGDNTIDFLEYVAALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVE 122
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 58.2 bits (141), Expect = 1e-12
Identities = 10/67 (14%), Positives = 17/67 (25%), Gaps = 2/67 (2%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDF 66
F D + I+ GI LG + +D G++
Sbjct: 90 SVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGL--DKTMAPASFDAIDTNNDGLLSL 147
Query: 67 PHFLELM 73
F+
Sbjct: 148 EEFVIAG 154
Score = 55.1 bits (133), Expect = 2e-11
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 11/83 (13%)
Query: 6 TEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSE-AELEEMIREV-------- 56
++ V + F+ D D G IT + + AE +++ +
Sbjct: 1 SDLWVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNF 60
Query: 57 --DPEGKGIIDFPHFLELMMKKV 77
G ID F+ M + V
Sbjct: 61 LTAVAGGKGIDETTFINSMKEMV 83
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 57.8 bits (140), Expect = 2e-12
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 8 DQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFP 67
+N +R+ F FD D SGT+ + L + ++G + + + + GK I F
Sbjct: 69 AVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTSGK--ITFD 126
Query: 68 HFLELMMKK 76
++ +K
Sbjct: 127 DYIACCVKL 135
Score = 51.2 bits (123), Expect = 6e-10
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 6/71 (8%)
Query: 10 VNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNP-----SEAELEEMIREVDPEGKGII 64
++ F+ G I A L + G + M+ +D + G +
Sbjct: 1 MDPLYGYFASV-AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTM 59
Query: 65 DFPHFLELMMK 75
F F EL
Sbjct: 60 GFNEFKELWAV 70
Score = 28.5 bits (64), Expect = 0.16
Identities = 3/21 (14%), Positives = 8/21 (38%)
Query: 9 QVNDFREAFSLFDKDGSGTIT 29
++ ++F D G +
Sbjct: 134 KLRALTDSFRRRDSAQQGMVN 154
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 57.8 bits (140), Expect = 2e-12
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 7/67 (10%)
Query: 17 FSLFDK--DGSGTITAKHLGIVMRSLGRNPSEAEL-----EEMIREVDPEGKGIIDFPHF 69
++ F G + A+ L + G N + + MI +D + G + F F
Sbjct: 3 YTYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAF 62
Query: 70 LELMMKK 76
EL
Sbjct: 63 KELWAAL 69
Score = 57.4 bits (139), Expect = 3e-12
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 8 DQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFP 67
+N ++E F D+DGSGT+ L + +G S L +++ G+ I F
Sbjct: 67 AALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGR--IFFD 124
Query: 68 HFLELMMK 75
++ +K
Sbjct: 125 DYVACCVK 132
Score = 27.3 bits (61), Expect = 0.31
Identities = 3/21 (14%), Positives = 7/21 (33%)
Query: 9 QVNDFREAFSLFDKDGSGTIT 29
++ + F D G+
Sbjct: 132 KLRALTDFFRKRDHLQQGSAN 152
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 58.9 bits (143), Expect = 3e-12
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 14 REAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELM 73
R AF+LFD D SG IT + L + + SE +++ E D +IDF F+ +M
Sbjct: 438 RRAFNLFDTDKSGKITKEELANLFG--LTSISEKTWNDVLGEADQNKDNMIDFDEFVSMM 495
Query: 74 MK 75
K
Sbjct: 496 HK 497
Score = 47.8 bits (114), Expect = 2e-08
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 3 SFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNP--------SEAELEEMIR 54
T ++ + + F DK+G G + K L L E E++ +++
Sbjct: 347 KLTTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILK 406
Query: 55 EVDPEGKGIIDFPHFL 70
EVD + G I++ F+
Sbjct: 407 EVDFDKNGYIEYSEFI 422
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 58.6 bits (142), Expect = 4e-12
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 14 REAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELM 73
AF FD+DG+G I+ L V + +EMI +D G +DF F +++
Sbjct: 429 ESAFQKFDQDGNGKISVDELASVFG--LDHLESKTWKEMISGIDSNNDGDVDFEEFCKMI 486
Query: 74 MK 75
K
Sbjct: 487 QK 488
Score = 48.5 bits (116), Expect = 1e-08
Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 3 SFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNP--------SEAELEEMIR 54
++++ + + F DK+G G + + L L E+E++ ++
Sbjct: 338 KLTSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILG 397
Query: 55 EVDPEGKGIIDFPHFLELMM 74
D + G ID+ F+ + M
Sbjct: 398 AADFDRNGYIDYSEFVTVAM 417
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 58.2 bits (141), Expect = 4e-12
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 14 REAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELM 73
AF +FD D SG I++ L + + + ++ EVD G +DF F +++
Sbjct: 421 ERAFRMFDSDNSGKISSTELATIFG--VSDVDSETWKSVLSEVDKNNDGEVDFDEFQQML 478
Query: 74 MK 75
+K
Sbjct: 479 LK 480
Score = 48.2 bits (115), Expect = 2e-08
Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 3 SFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRS-----------LGRNPSEAELEE 51
++D+ + F DK+G G + L + L + E E+++
Sbjct: 327 KLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQ 386
Query: 52 MIREVDPEGKGIIDFPHFLELMM 74
++ VD + G I++ F+ + M
Sbjct: 387 VLDAVDFDKNGYIEYSEFVTVAM 409
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 56.0 bits (135), Expect = 1e-11
Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 2/72 (2%)
Query: 2 DSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGK 61
L E F + D G I V S G +++ + + GK
Sbjct: 100 GESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYGI--PKSDCDAAFDTLSDGGK 157
Query: 62 GIIDFPHFLELM 73
++ F L
Sbjct: 158 TMVTREIFARLW 169
Score = 52.1 bits (125), Expect = 4e-10
Identities = 11/89 (12%), Positives = 29/89 (32%), Gaps = 16/89 (17%)
Query: 5 LTEDQVNDFREAF-SLFDKDGSGTITAKHLGIVMRSLG---------------RNPSEAE 48
L++ Q N F + +D + G I + ++ + R +
Sbjct: 6 LSDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLI 65
Query: 49 LEEMIREVDPEGKGIIDFPHFLELMMKKV 77
+ + + D + +L++ + V
Sbjct: 66 WDGLRKYADENEDEQVTKEEWLKMWAECV 94
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8
PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 53.2 bits (128), Expect = 1e-10
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 9/76 (11%)
Query: 8 DQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNP--------SEAELEEMIREVDPE 59
++V FR F+ D ++A L ++ + M+ +D +
Sbjct: 1 EEVRQFRRLFAQLAGD-DMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSD 59
Query: 60 GKGIIDFPHFLELMMK 75
G + F F L
Sbjct: 60 TTGKLGFEEFKYLWNN 75
Score = 50.5 bits (121), Expect = 1e-09
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 8 DQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFP 67
+ + ++ + FD D SGTI + L + G + +E +IR + G +DF
Sbjct: 74 NNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIR-RYSDEGGNMDFD 132
Query: 68 HFLELMMK 75
+F+ +++
Sbjct: 133 NFISCLVR 140
Score = 27.8 bits (62), Expect = 0.22
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 9 QVNDFREAFSLFDKDGSGTITAKH---LGIVMRS 39
+++ AF DKDG+G I L + M S
Sbjct: 140 RLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMYS 173
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 54.1 bits (129), Expect = 2e-10
Identities = 21/71 (29%), Positives = 42/71 (59%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGII 64
++++Q+N+FR +F+ FD+ +G + + + S+G N EAE ++ VDP G++
Sbjct: 719 ISQEQMNEFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVV 778
Query: 65 DFPHFLELMMK 75
F F++ M +
Sbjct: 779 TFQAFIDFMSR 789
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 52.6 bits (126), Expect = 2e-10
Identities = 12/69 (17%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGII 64
L N F D G G + + ++ A++ + + GK
Sbjct: 99 LPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQL--QCADVPAVYNVITDGGKVTF 156
Query: 65 DFPHFLELM 73
D + EL
Sbjct: 157 DLNRYKELY 165
Score = 45.3 bits (107), Expect = 1e-07
Identities = 12/89 (13%), Positives = 25/89 (28%), Gaps = 16/89 (17%)
Query: 5 LTEDQVNDFREAF-SLFDKDGSGTITAKHLGIVMRSLGRNPS---------------EAE 48
L + Q + F D + G+I +M E E
Sbjct: 2 LNDFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDE 61
Query: 49 LEEMIREVDPEGKGIIDFPHFLELMMKKV 77
++ D ++ + +L + K +
Sbjct: 62 WRDLKGRADINKDDVVSWEEYLAMWEKTI 90
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 48.6 bits (116), Expect = 7e-09
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 14 REAFSLFDKDGSGTITAKHLGIVMRSLGR------NPSEAELEEMIREVDPEGKGIIDFP 67
+ F L+D DG+G+I L + ++ E + + ++D G +
Sbjct: 96 KWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELTLE 155
Query: 68 HFLELMMK 75
F+ M K
Sbjct: 156 EFINGMAK 163
Score = 45.2 bits (107), Expect = 1e-07
Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNP-SEAELEEMIREVDPEGKGI 63
+ + + + F + SG T ++ G N + ++++ D G
Sbjct: 16 VPTQETHVWYRTF--MMEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGF 73
Query: 64 IDFPHFLELMMKK 76
+DF F+ +
Sbjct: 74 VDFLEFIAAVNLI 86
Score = 25.5 bits (56), Expect = 1.7
Identities = 12/58 (20%), Positives = 25/58 (43%)
Query: 17 FSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74
++ FD + G + + + + E +L+ + D +G G ID L++ M
Sbjct: 63 YNTFDTNKDGFVDFLEFIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKNELLDMFM 120
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 45.9 bits (109), Expect = 8e-08
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 14 REAFSLFDKDGSGTITAKHLGIVMRSLGRNPS-------EAELEEMIREVDPEGKGIIDF 66
R F L+D DG+G I L +++++ E + ++D G G +
Sbjct: 91 RWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGELSL 150
Query: 67 PHFLELMMK 75
F+E + K
Sbjct: 151 EEFMEGVQK 159
Score = 44.4 bits (105), Expect = 3e-07
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAEL-EEMIREVDPEGKGI 63
L+ + + + + F + SG +T +PS + E+M D G
Sbjct: 11 LSATECHQWYKKF--MTECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGY 68
Query: 64 IDFPHFLELMMKK 76
IDF ++ +
Sbjct: 69 IDFMEYVAALSLV 81
Score = 29.0 bits (65), Expect = 0.098
Identities = 12/58 (20%), Positives = 22/58 (37%)
Query: 17 FSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74
F FD + G I + + + + +L + D +G G ID L ++
Sbjct: 58 FETFDFNKDGYIDFMEYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIK 115
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 45.8 bits (109), Expect = 1e-07
Identities = 7/63 (11%), Positives = 12/63 (19%), Gaps = 7/63 (11%)
Query: 14 REAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELM 73
D S I + + + G + V G H
Sbjct: 385 LNPHIHLMGDESACIAYIRITQYLDAGGI---PRTAQSEETRVWHRRDGKWQIVH----F 437
Query: 74 MKK 76
+
Sbjct: 438 HRS 440
Score = 24.6 bits (54), Expect = 4.3
Identities = 6/67 (8%), Positives = 14/67 (20%), Gaps = 10/67 (14%)
Query: 4 FLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGI 63
+ + + L + +G + + E
Sbjct: 312 NFSVRKQEIIKVTEQLIEAISNGDFE----------SYTKMCDPGMTAFEPEALGNLVEG 361
Query: 64 IDFPHFL 70
+DF F
Sbjct: 362 LDFHRFY 368
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 45.2 bits (107), Expect = 1e-07
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 14 REAFSLFDKDGSGTITAKHLGIVMRSLGRNPS--------EAELEEMIREVDPEGKGIID 65
+ AF L+D +G I + L ++ +L E +++ + D + G ID
Sbjct: 114 KFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKID 173
Query: 66 FPHFLELMMK 75
+ + +
Sbjct: 174 IDEWKDFVSL 183
Score = 35.1 bits (81), Expect = 7e-04
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 3 SFLTEDQVNDFREAFSLFDKD--GSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEG 60
+ T ++V E F G I + + + RN + + D +
Sbjct: 29 TPFTVEEVEALYELFKKLSSSIIDDGLIHKEEFQLAL-FRNRNRRNLFADRIFDVFDVKR 87
Query: 61 KGIIDFPHFLELM 73
G+I+F F+ +
Sbjct: 88 NGVIEFGEFVRSL 100
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 45.2 bits (107), Expect = 2e-07
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 14 REAFSLFDKDGSGTITAKHLGIVMRSL----GRNPSEAELEE----MIREVDPEGKGIID 65
+F L+D G I + + ++ + G N + +E+ E D + G ID
Sbjct: 125 HFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKID 184
Query: 66 FPHFLELMMK 75
+ L+++
Sbjct: 185 KEEWRSLVLR 194
Score = 31.7 bits (72), Expect = 0.010
Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 3/73 (4%)
Query: 3 SFLTEDQVNDFREAFSLFDKD--GSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEG 60
+ + ++ E F G I + + + + S + + D +
Sbjct: 40 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESL-FADRVFDLFDTKH 98
Query: 61 KGIIDFPHFLELM 73
GI+ F F +
Sbjct: 99 NGILGFEEFARAL 111
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 44.0 bits (104), Expect = 3e-07
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 14 REAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAEL---------EEMIREVDPEGKGII 64
AF +FD D GT+ + L ++ L + L + ++ E D + G I
Sbjct: 101 HYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTI 160
Query: 65 DFPHFLELMMK 75
+ F ++ +
Sbjct: 161 NLSEFQHVISR 171
Score = 30.1 bits (68), Expect = 0.034
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 9/78 (11%)
Query: 3 SFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIV-------MRSLGRNPSEAELEEMIRE 55
+FLT+ ++ F ++ + V + L NP + + +
Sbjct: 12 TFLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFST 71
Query: 56 VDPEGKGIIDFPHFLELM 73
K + F FL+L+
Sbjct: 72 SP--AKDSLSFEDFLDLL 87
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 42.4 bits (100), Expect = 6e-07
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGII 64
+ + +R+ F+ DK SG +T ++ +A+L + D + G +
Sbjct: 8 VPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSS--LPQAQLASIWNLSDIDQDGKL 65
Query: 65 DFPHFLELM 73
F+ M
Sbjct: 66 TAEEFILAM 74
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis
complex; NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 41.6 bits (98), Expect = 9e-07
Identities = 11/69 (15%), Positives = 19/69 (27%), Gaps = 2/69 (2%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGII 64
+T++Q + F D +G I EL + D + G +
Sbjct: 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSK--LPILELSHIWELSDFDKDGAL 60
Query: 65 DFPHFLELM 73
F
Sbjct: 61 TLDEFCAAF 69
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme
delta1; phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 42.2 bits (98), Expect = 2e-06
Identities = 8/63 (12%), Positives = 17/63 (26%)
Query: 13 FREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLEL 72
DK+ + K L ++ L + ++ RE D ++
Sbjct: 13 IHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDEEIETF 72
Query: 73 MMK 75
Sbjct: 73 YKM 75
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 40.5 bits (95), Expect = 3e-06
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGII 64
++ + + E F DKD G ++ + + G L + D + G +
Sbjct: 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTG--LPSTLLAHIWSLCDTKDCGKL 61
Query: 65 DFPHFLELM 73
F
Sbjct: 62 SKDQFALAF 70
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 40.1 bits (94), Expect = 4e-06
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGII 64
+TE+Q + F D S I+ S EL + D + G +
Sbjct: 16 ITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSK--LSIPELSYIWELSDADCDGAL 73
Query: 65 DFPHFLELM 73
P F
Sbjct: 74 TLPEFCAAF 82
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 41.0 bits (96), Expect = 5e-06
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 16 AFSLFDKDGSGTITAKHLGIVMRSL-----GRNPSEAELEE----MIREVDPEGKGIIDF 66
AF +FD D GT+ + L ++ L S +E+++ ++ E D + G I+
Sbjct: 134 AFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINL 193
Query: 67 PHFLELMMK 75
F ++ +
Sbjct: 194 SEFQHVISR 202
Score = 33.3 bits (76), Expect = 0.003
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 13/80 (16%)
Query: 3 SFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIV-------MRSLGRNPSEAELEEMIRE 55
+FLT+ ++ F ++ + V + L NP +E I
Sbjct: 43 TFLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANP----FKERICR 98
Query: 56 V--DPEGKGIIDFPHFLELM 73
V K + F FL+L+
Sbjct: 99 VFSTSPAKDSLSFEDFLDLL 118
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 39.8 bits (92), Expect = 2e-05
Identities = 14/68 (20%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 8 DQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFP 67
+ + ++ + F+ D SGTI + L + G + ++ +IR + G +DF
Sbjct: 801 NNIKKWQGIYKRFETDRSGTIGSNELPGAFEAAGFHLNQHIYSMIIRRYS-DETGNMDFD 859
Query: 68 HFLELMMK 75
+F+ +++
Sbjct: 860 NFISCLVR 867
Score = 37.8 bits (87), Expect = 8e-05
Identities = 13/68 (19%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 8 DQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFP 67
+++ ++ F FD D SG+++A + + + + G + ++ + + IIDF
Sbjct: 604 NRIRNYLTIFRKFDLDKSGSMSAYEMRMAIEAAGFKLPCQLHQVIVARFA-DDELIIDFD 662
Query: 68 HFLELMMK 75
+F+ +++
Sbjct: 663 NFVRCLVR 670
Score = 28.6 bits (63), Expect = 0.16
Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 9/77 (11%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHL-----GIVMRSLGRNPSEAELE---EMIREVDP 58
++ FR+ F ++A L +V R ++ M+ +D
Sbjct: 727 SEEERQFRKLFVQLA-GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDS 785
Query: 59 EGKGIIDFPHFLELMMK 75
+ G + F F L
Sbjct: 786 DTTGKLGFEEFKYLWNN 802
Score = 25.1 bits (54), Expect = 3.2
Identities = 10/78 (12%), Positives = 25/78 (32%), Gaps = 21/78 (26%)
Query: 14 REAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDF------- 66
R +L D+DG+G + I+ + + R+ D + G +
Sbjct: 580 RSMVNLMDRDGNGKLGLVEFNILWNRI------RNYLTIFRKFDLDKSGSMSAYEMRMAI 633
Query: 67 --------PHFLELMMKK 76
++++ +
Sbjct: 634 EAAGFKLPCQLHQVIVAR 651
Score = 24.7 bits (53), Expect = 3.5
Identities = 5/48 (10%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 18 SLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIID 65
++ D D +G + + + ++ + + + + + + G I
Sbjct: 781 AVMDSDTTGKLGFEEFKYLWNNI------KKWQGIYKRFETDRSGTIG 822
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 39.8 bits (92), Expect = 2e-05
Identities = 11/68 (16%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 8 DQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFP 67
++ +++ + D D SGT+ + + + G + ++ + + IIDF
Sbjct: 602 TKIQKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVIVARFA-DDELIIDFD 660
Query: 68 HFLELMMK 75
+F+ +++
Sbjct: 661 NFVRCLVR 668
Score = 25.5 bits (55), Expect = 2.2
Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 14 REAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHF 69
+ + D+DGSG + K I+ + + +++ RE+D + G ++
Sbjct: 578 KIMVDMLDEDGSGKLGLKEFYILWTKIQ------KYQKIYREIDVDRSGTMNSYEM 627
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos
taurus} SCOP: a.39.1.5
Length = 193
Score = 38.7 bits (90), Expect = 3e-05
Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 3 SFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMI-REVDPEGK 61
+ TE ++ ++ + F SG ++ + + + ++ E + R D G
Sbjct: 20 TDFTEHEIQEWYKGF--LRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGD 77
Query: 62 GIIDFPHFLELMMKK 76
G IDF F+ +
Sbjct: 78 GTIDFREFIIALSVT 92
Score = 35.6 bits (82), Expect = 5e-04
Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 12/74 (16%)
Query: 14 REAFSLFDKDGSGTITAKHLGIVMRSLGRNPS------------EAELEEMIREVDPEGK 61
+ AFS++D DG+G I+ + +++++ + S E E++ R++D
Sbjct: 102 KWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRD 161
Query: 62 GIIDFPHFLELMMK 75
G + F+
Sbjct: 162 GKLSLEEFIRGAKS 175
Score = 29.0 bits (65), Expect = 0.10
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 1 MDSFLTEDQVNDFRE-AFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPE 59
+F + F E F FD +G GTI + I + R E +L+ D +
Sbjct: 52 YGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLD 111
Query: 60 GKGIIDFPHFLELMM 74
G G I LE++
Sbjct: 112 GNGYISKAEMLEIVQ 126
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 35.9 bits (83), Expect = 1e-04
Identities = 9/69 (13%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGII 64
+ + + + +G + A ++ G L ++ D +GKG++
Sbjct: 5 QLSSGNPVYEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDL--ILGKIWDLADTDGKGVL 62
Query: 65 DFPHFLELM 73
F +
Sbjct: 63 SKQEFFVAL 71
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 36.4 bits (84), Expect = 2e-04
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 12/74 (16%)
Query: 14 REAFSLFDKDGSGTITAKHLGIVMRSL--------GRNPSEAELEE----MIREVDPEGK 61
AF L+D + G IT + ++ S+ N EA E + + +D
Sbjct: 102 SWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNED 161
Query: 62 GIIDFPHFLELMMK 75
G I F E
Sbjct: 162 GYITLDEFREGSKV 175
Score = 35.6 bits (82), Expect = 4e-04
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
Query: 1 MDSFLTEDQVNDFREA-FSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPE 59
F DF F++FDKD +G I + V+ + R E +L D
Sbjct: 52 YKQFFPFGSPEDFANHLFTVFDKDNNGFIHFEEFITVLSTTSRGTLEEKLSWAFELYDLN 111
Query: 60 GKGIIDFPHFLELMM 74
G I F L ++
Sbjct: 112 HDGYITFDEMLTIVA 126
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand,
voltage-gated sodium channel regulation, CTD binds to
FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens}
PDB: 2kbi_A
Length = 168
Score = 35.4 bits (81), Expect = 4e-04
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 7/78 (8%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLG-----RNPSEAELEEMIREVDPE 59
L+ED + F E + FD + + I L +L P++ L M +
Sbjct: 14 LSEDDFDMFYEIWEKFDPEATQFIEYSVLSDFADALSEPLRIAKPNQISLINMDLPMVSG 73
Query: 60 GKGIIDFPHFLELMMKKV 77
+ I L K+V
Sbjct: 74 DR--IHCMDILFAFTKRV 89
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 35.6 bits (82), Expect = 5e-04
Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 12/74 (16%)
Query: 14 REAFSLFDKDGSGTITAKHLGIVMRSLGR------------NPSEAELEEMIREVDPEGK 61
AF L+D D +G I+ + ++ ++ + + E + ++ +D
Sbjct: 102 IWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKD 161
Query: 62 GIIDFPHFLELMMK 75
G + F E +
Sbjct: 162 GQLTLEEFCEGSKR 175
Score = 29.4 bits (66), Expect = 0.067
Identities = 13/58 (22%), Positives = 24/58 (41%)
Query: 17 FSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74
F++FD D +G I K + R +L + D + G+I + L ++
Sbjct: 69 FNVFDADKNGYIDFKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVD 126
Score = 29.4 bits (66), Expect = 0.072
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 3/73 (4%)
Query: 3 SFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAEL-EEMIREVDPEGK 61
+ + ++ + + F F SG + + + + E + D +
Sbjct: 20 TRFDKKELQQWYKGF--FKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKN 77
Query: 62 GIIDFPHFLELMM 74
G IDF F+ +
Sbjct: 78 GYIDFKEFICALS 90
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 35.2 bits (81), Expect = 6e-04
Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 12/74 (16%)
Query: 14 REAFSLFDKDGSGTITAKHLGIVMRSL----GRNPSEAE--------LEEMIREVDPEGK 61
AF+L+D + G IT + + +M+++ G+ +E +++D
Sbjct: 141 NWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKD 200
Query: 62 GIIDFPHFLELMMK 75
G++ F+E K
Sbjct: 201 GVVTIDEFIESCQK 214
Score = 27.5 bits (61), Expect = 0.31
Identities = 13/58 (22%), Positives = 23/58 (39%)
Query: 17 FSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74
F+ FD D +G ++ + + L R + +L D G I L++M
Sbjct: 108 FNAFDTDHNGAVSFEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMK 165
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 34.9 bits (80), Expect = 6e-04
Identities = 9/71 (12%), Positives = 24/71 (33%), Gaps = 4/71 (5%)
Query: 8 DQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEA---ELEEMIREVDPEGKGII 64
++ ++ F G + + L + + EL ++ + G +
Sbjct: 73 KRLVHYQHVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTLRYSDSVGRV 131
Query: 65 DFPHFLELMMK 75
FP + +M+
Sbjct: 132 SFPSLVCFLMR 142
Score = 30.7 bits (69), Expect = 0.024
Identities = 9/74 (12%), Positives = 22/74 (29%), Gaps = 9/74 (12%)
Query: 11 NDFREAF-SLFDKDGSGTITAKHLGIVMRSLGRNPSEAEL------EEMIREVDPEGKGI 63
+ L + I A L ++ ++ ++ ++ + G
Sbjct: 5 HHHHHHSSGLVPRGSD--IDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKVNGR 62
Query: 64 IDFPHFLELMMKKV 77
+D F L + V
Sbjct: 63 LDQEEFARLWKRLV 76
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 34.6 bits (79), Expect = 9e-04
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 12/74 (16%)
Query: 14 REAFSLFDKDGSGTITAKHLGIVMRSL----GRNPSEAELEE--------MIREVDPEGK 61
+ AF+L+D + G IT + + +M+S+ GR+ E+ +++D
Sbjct: 168 KWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQD 227
Query: 62 GIIDFPHFLELMMK 75
G++ FLE K
Sbjct: 228 GVVTIDEFLETCQK 241
Score = 28.5 bits (63), Expect = 0.15
Identities = 15/58 (25%), Positives = 23/58 (39%)
Query: 17 FSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74
F+ FD DG+G I + + + L R +L+ D G I L +M
Sbjct: 135 FNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMK 192
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 34.0 bits (78), Expect = 0.001
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 12/74 (16%)
Query: 14 REAFSLFDKDGSGTITAKHLGIVMRSLGRNPS------------EAELEEMIREVDPEGK 61
R AF L+D D G IT + ++ ++ + E ++ + +D
Sbjct: 102 RWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNAD 161
Query: 62 GIIDFPHFLELMMK 75
G + F E
Sbjct: 162 GKLTLQEFQEGSKA 175
Score = 26.3 bits (58), Expect = 0.96
Identities = 11/58 (18%), Positives = 23/58 (39%)
Query: 17 FSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMM 74
F++FD++ G I + R + +L + D + G I L+++
Sbjct: 69 FNVFDENKDGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVD 126
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 33.1 bits (75), Expect = 0.003
Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 1 MDSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEE--------M 52
+ + N R F + DK+ G +TA+ + ++ ++++E +
Sbjct: 88 YEQLTDQGFDNRLRTFFDMVDKNADGRLTAEEVKEIIALSASANKLSKIKERADEYTALI 147
Query: 53 IREVDPEGKGIIDFPHFLELMMKK 76
+ E+DP G I+ L+++
Sbjct: 148 MEELDPTNLGYIEMEDLEALLLQS 171
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 33.0 bits (75), Expect = 0.003
Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 14/85 (16%)
Query: 1 MDSFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGR--------NPSEAELEEM 52
++ ++ ++ F + D DG+ + L + + + SE EL +
Sbjct: 60 PEAEMSPQELQLH--YFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINI 117
Query: 53 I----REVDPEGKGIIDFPHFLELM 73
I R+ D G ID+ F + +
Sbjct: 118 IDGVLRDDDKNNDGYIDYAEFAKSL 142
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 32.6 bits (74), Expect = 0.005
Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 12/74 (16%)
Query: 14 REAFSLFDKDGSGTITAKHLGIVMRSL----GRNPSEAELEE--------MIREVDPEGK 61
R F+L+D + G I + + +++++ G+ E+ +++D
Sbjct: 128 RWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKD 187
Query: 62 GIIDFPHFLELMMK 75
GI+ FLE +
Sbjct: 188 GIVTLDEFLESCQE 201
Score = 31.1 bits (70), Expect = 0.016
Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
Query: 1 MDSFLTEDQVNDFRE-AFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPE 59
F + + F+ FD +G++ + + L R +L D
Sbjct: 78 YAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDIN 137
Query: 60 GKGIIDFPHFLELMM 74
G I+ ++++
Sbjct: 138 KDGYINKEEMMDIVK 152
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.005
Identities = 8/58 (13%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 1 MDSFLTEDQVNDFREAF---SLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIRE 55
++S L + ++R+ F S+F I L + + + ++++ ++ +
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAH--IPTILLSL----IWFDVIKSDVMVVVNK 410
Score = 26.7 bits (58), Expect = 0.74
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 16/65 (24%)
Query: 1 MDSFLTE------DQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIR 54
MD E D ++ F +AF + K + + +S+ S+ E++ +I
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFV---DN----FDCKDVQDMPKSI---LSKEEIDHIIM 56
Query: 55 EVDPE 59
D
Sbjct: 57 SKDAV 61
Score = 26.4 bits (57), Expect = 0.92
Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 19/81 (23%)
Query: 2 DSFLTEDQVNDFR--EAFS-----LF---DK---DGSGTITAKHLGIVMRSLGRNPSEAE 48
+ L V + + AF+ L K D T H+ + S+ P E +
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 49 ------LEEMIREVDPEGKGI 63
L+ +++ E
Sbjct: 305 SLLLKYLDCRPQDLPREVLTT 325
>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium
channel, alternative splicing, disease epilepsy,
glycoprotein, ION transport; NMR {Homo sapiens} PDB:
2kbi_A
Length = 129
Score = 32.1 bits (73), Expect = 0.006
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 7/78 (8%)
Query: 5 LTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLG-----RNPSEAELEEMIREVDPE 59
L+ED F E + FD D + I L +L P++ +L M +
Sbjct: 37 LSEDDFEMFYEVWEKFDPDATQFIEFAKLSDFADALDPPLLIAKPNKVQLIAMDLPMVSG 96
Query: 60 GKGIIDFPHFLELMMKKV 77
+ I L K+V
Sbjct: 97 DR--IHCLDILFAFTKRV 112
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 32.3 bits (73), Expect = 0.006
Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 14/74 (18%)
Query: 16 AFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAEL--------------EEMIREVDPEGK 61
AFSL+D DG+GTI+ + ++ ++ + + ++ E++ +
Sbjct: 112 AFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDD 171
Query: 62 GIIDFPHFLELMMK 75
+ F+E +
Sbjct: 172 DKLTEKEFIEGTLA 185
Score = 28.0 bits (62), Expect = 0.21
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
Query: 1 MDSFLTEDQVNDFRE-AFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPE 59
F + + + F FD + GT+ K I + + +LE D +
Sbjct: 60 YAKFFPDTDPKAYAQHVFRSFDSNLDGTLDFKEYVIALHMTTAGKTNQKLEWAFSLYDVD 119
Query: 60 GKGIIDFPHFLELMM 74
G G I LE++M
Sbjct: 120 GNGTISKNEVLEIVM 134
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 32.1 bits (73), Expect = 0.008
Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
Query: 1 MDSFLTEDQVNDFRE-AFSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPE 59
F + + F+ FD +G++ + + L R +L D
Sbjct: 45 YAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDIN 104
Query: 60 GKGIIDFPHFLELMM 74
G I+ ++++
Sbjct: 105 KDGYINKEEMMDIVK 119
Score = 30.6 bits (69), Expect = 0.028
Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 12/74 (16%)
Query: 14 REAFSLFDKDGSGTITAKHLGIVMRSL----GRNPSEAELEE--------MIREVDPEGK 61
R F+L+D + G I + + +++++ G+ E+ +++D
Sbjct: 95 RWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKD 154
Query: 62 GIIDFPHFLELMMK 75
GI+ FLE +
Sbjct: 155 GIVTLDEFLESXQE 168
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 29.6 bits (67), Expect = 0.029
Identities = 13/74 (17%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 6 TEDQVNDFREAFSLFD-KDG-SGTITAKHLGIVMRSLGRN--PSEAELEEMIREVDPEGK 61
+ + + F + K+G ++ + L ++++ + L+++ +E+D G
Sbjct: 2 AQKSPAELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGD 61
Query: 62 GIIDFPHFLELMMK 75
G + F F L+ K
Sbjct: 62 GEVSFEEFQVLVKK 75
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 28.6 bits (64), Expect = 0.071
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 6 TEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRS-----LGRNPSEAELEEMIREVDPEG 60
E + F F D G +T + L ++M L ++++++++D
Sbjct: 4 MEHAMETMMFTFHKFAGD-KGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCR 62
Query: 61 KGIIDFPHFLELMMK 75
G + F F L+
Sbjct: 63 DGKVGFQSFFSLIAG 77
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins,
protein dynamics, binding protein; 2.10A {Homo sapiens}
PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 28.2 bits (63), Expect = 0.11
Identities = 8/64 (12%), Positives = 21/64 (32%), Gaps = 5/64 (7%)
Query: 17 FSLFDKDGSGTITAKHLGIVMRS-----LGRNPSEAELEEMIREVDPEGKGIIDFPHFLE 71
+ I+ +++ L + +++I+ +D G I F +
Sbjct: 20 YVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDEYWT 79
Query: 72 LMMK 75
L+
Sbjct: 80 LIGG 83
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1mr8_A
Length = 93
Score = 27.8 bits (62), Expect = 0.15
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 21 DKDG-SGTITAKHLGIVMRS-LGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75
G + L ++ + + + + +E+D G ++F FL L++K
Sbjct: 21 LIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIK 77
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 0.16
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 11/53 (20%)
Query: 32 HLGIVMRSLGRNPSEAELEEMIREVDPEGKGII---------DFPHFLELMMK 75
H + + LG P EL ++ +G++ + F + K
Sbjct: 248 HYVVTAKLLGFTP--GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK 298
Score = 26.6 bits (58), Expect = 0.98
Identities = 6/30 (20%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 37 MRSLGRNPSEAELEEMIREVD---PEGKGI 63
M S+ N ++ ++++ + + + P GK +
Sbjct: 338 MLSI-SNLTQEQVQDYVNKTNSHLPAGKQV 366
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium
free, signaling protein; HET: MSE; 1.15A {Homo sapiens}
SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A
1jwd_A 2cnp_A 2jtt_A
Length = 90
Score = 26.3 bits (58), Expect = 0.54
Identities = 9/59 (15%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 21 DKDG-SGTITAKHLGIVMRS---LGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75
++G T++ K L +++ +G +AE+ ++ ++D ++F ++ +
Sbjct: 21 GREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFLGA 79
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 27.0 bits (59), Expect = 0.58
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 17 FSLFDKDGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELM 73
+++D +G I + SL + E + + ++V G D L+
Sbjct: 138 LNVYDTGRTGRIRVLSFKTGIISLCKAHLEDKYRYLFKQVA-SSTGFCDQRRLGLLL 193
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 26.8 bits (59), Expect = 0.64
Identities = 2/17 (11%), Positives = 7/17 (41%)
Query: 44 PSEAELEEMIREVDPEG 60
P + + + +D +
Sbjct: 633 PQDRYIINFVSNLDTDV 649
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 26.1 bits (57), Expect = 0.78
Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 16/86 (18%)
Query: 7 EDQVNDFREAFSLFDKDGSGTIT--------AKHLGIVMRSLGRNPSEAELEEMI----- 53
+ + + F L D + G + K L V E+EE
Sbjct: 16 DPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMRE 75
Query: 54 ---REVDPEGKGIIDFPHFLELMMKK 76
+ VD ++ FL +K
Sbjct: 76 HVMKNVDTNQDRLVTLEEFLASTQRK 101
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1irj_A*
Length = 113
Score = 25.6 bits (56), Expect = 1.3
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 31 KHLGIVMRSLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75
K L ++ +N +E ++ ++D + F F+ LM +
Sbjct: 42 KDLQNFLKKENKNE--KVIEHIMEDLDTNADKQLSFEEFIMLMAR 84
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR
domain, ATPase, protein secret protein transport; 2.00A
{Mycobacterium tuberculosis}
Length = 282
Score = 25.5 bits (55), Expect = 1.8
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 7/54 (12%)
Query: 13 FREAFSLFDKDGSGTITAK-------HLGIVMRSLGRNPSEAELEEMIREVDPE 59
F EA + +L + RS G + L E ++ PE
Sbjct: 187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2,
NYSGXRC, structu genomics, protein structure initiative;
1.76A {Thermus thermophilus}
Length = 154
Score = 25.0 bits (55), Expect = 2.2
Identities = 7/40 (17%), Positives = 11/40 (27%), Gaps = 4/40 (10%)
Query: 23 DGSGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKG 62
D G + A G GR L +++
Sbjct: 117 DREGKVVALFAG----RAGREALLDALLLAGADLEGHHHH 152
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 24.8 bits (54), Expect = 2.4
Identities = 6/36 (16%), Positives = 18/36 (50%)
Query: 40 LGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75
L + ++++++++D G +DF F+ +
Sbjct: 45 LQSGKDKDAVDKLLKDLDANGDAQVDFSEFIVFVAA 80
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response,
metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A*
2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 24.4 bits (53), Expect = 2.8
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 46 EAELEEMIREVDPEGKGIIDFPHFLELMMK 75
+A ++E+ + +D +DF F+ L+
Sbjct: 54 KAVIDEIFQGLDANQDEQVDFQEFISLVAI 83
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis,
dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus
subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Length = 349
Score = 24.7 bits (54), Expect = 3.1
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 30 AKHLGIVM-----RSLGRNPSEAELEEMIREVDPEG 60
A GI + S ++PSE E++R+ +P G
Sbjct: 82 ASQAGIPLAVGSQMSALKDPSERLSYEIVRKENPNG 117
>3o3v_A Beta-lactamase, CLBP protein; alpha/beta, disulfide bridge,
hydrolase; 2.40A {Escherichia coli}
Length = 335
Score = 24.6 bits (54), Expect = 3.2
Identities = 6/61 (9%), Positives = 18/61 (29%), Gaps = 8/61 (13%)
Query: 7 EDQVNDFREAFSLFDKDGSGTITAKHL-----GI---VMRSLGRNPSEAELEEMIREVDP 58
D + + L + ++T G+ + L + + + +R +
Sbjct: 77 GDDIITYLPEMRLNYQGKPASLTVADFLYHTSGLPFSTLARLENPMPGSAVAQQLRNENL 136
Query: 59 E 59
Sbjct: 137 L 137
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding
domain, monofunctional, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB:
1ee9_A*
Length = 320
Score = 24.6 bits (54), Expect = 3.5
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 29 TAKHLGIVMRS-LGRNPSEAELEEMIREV--DPEGKGII 64
T++ +G R L + LEE I + D GI+
Sbjct: 60 TSESMGF--RYDLRVIEDKDFLEEAIIQANGDDSVNGIM 96
>3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase;
1.50A {Bordetella bronchiseptica} PDB: 3giq_A*
Length = 480
Score = 24.5 bits (53), Expect = 3.7
Identities = 11/55 (20%), Positives = 16/55 (29%), Gaps = 6/55 (10%)
Query: 9 QVNDFREAFSLFDKDGSGTITAKHLG------IVMRSLGRNPSEAELEEMIREVD 57
D F+ D A +G MR P+ AE + M +
Sbjct: 120 LFADVPAYFAALDAQRPMINVAALVGHANLRLAAMRDPQAAPTAAEQQAMQDMLQ 174
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 24.0 bits (52), Expect = 4.6
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 40 LGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMK 75
L+ M++++D + G +DF FL L+
Sbjct: 49 TQNQKDPGVLDRMMKKLDLDSDGQLDFQEFLNLIGG 84
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 23.6 bits (51), Expect = 5.6
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 46 EAELEEMIREVDPEGKGIIDFPHFLELMMK 75
L+E ++ +D + F + L+ +
Sbjct: 61 VGSLDEKMKSLDVNQDSELKFNEYWRLIGE 90
>3tdq_A PILY2 protein; fimbiria, cell adhesion, structural genomics,
joint center F structural genomics, JCSG, protein
structure initiative; 2.10A {Pseudomonas aeruginosa}
Length = 98
Score = 23.7 bits (50), Expect = 6.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 25 SGTITAKHLGIVMRSLGRNPSEAELEEMIREVDPEGKG 62
SGT++ I + + SE EL EMI + P G
Sbjct: 56 SGTVSQPWSTITDIYIHKQMSEQELAEMIEKEQPRQDG 93
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent
enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A
{Thermus thermophilus}
Length = 376
Score = 23.7 bits (52), Expect = 6.8
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 47 AELEEMIREVDPEGKGIIDF 66
++E R+ G G+ID
Sbjct: 11 LVVDEAKRKARERGVGLIDL 30
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Length = 534
Score = 24.0 bits (53), Expect = 7.0
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 21 DKDGSGTITAKHLGIVMRSLGRNPSEAELEEMI 53
+ D G K+ ++ R S+ EL+++
Sbjct: 394 NSDEVGEDELKNAKLMS---QREASKEELKDLE 423
>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA;
1.55A {Homo sapiens} PDB: 1wl5_A
Length = 397
Score = 23.6 bits (52), Expect = 7.7
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 20 FDKDGSGTITA 30
F DG+GT+T
Sbjct: 238 FLTDGTGTVTP 248
>3ov9_A Nucleoprotein; orthogonal bundle, viral genomic encapsidation,
viral protein; 1.60A {Rift valley fever virus} PDB:
3ouo_A 3lyf_A
Length = 245
Score = 23.6 bits (50), Expect = 7.8
Identities = 7/39 (17%), Positives = 18/39 (46%)
Query: 3 SFLTEDQVNDFREAFSLFDKDGSGTITAKHLGIVMRSLG 41
+F++ ++ +F +AF L D +G + ++
Sbjct: 207 NFISHEKRREFLKAFGLVDSNGKPSAAVMAAAQAYKTAA 245
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 23.2 bits (50), Expect = 8.4
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 46 EAELEEMIREVDPEGKGIIDFPHFLELMMK 75
+E+++ ++D +DF F+ L+
Sbjct: 52 PMLVEKIMNDLDSNKDNEVDFNEFVVLVAA 81
>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein
fermentation; 2.50A {Acidaminococcus fermentans} SCOP:
c.124.1.3
Length = 260
Score = 23.7 bits (51), Expect = 8.9
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 42 RNPSEAELEEMIREVDPEG 60
P A ++ + E+DP
Sbjct: 236 EAPDPAVIKLIREEIDPGQ 254
>3iko_C Nucleoporin NUP84; NPC, transport, WD repeat, autocatalytic
cleavage, mRNA transport, nuclear pore complex, nucleus,
phosphoprotein; 3.20A {Saccharomyces cerevisiae} PDB:
3jro_C
Length = 460
Score = 23.5 bits (50), Expect = 9.0
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 32 HLGIVMRSLGRNPSEAELEEMI 53
HL I + + E + +
Sbjct: 391 HLAICLDIINPGSVEEVDKSKL 412
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas
midwest center for structural genomics, MCSG, PSI; 1.40A
{Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Length = 227
Score = 23.3 bits (51), Expect = 9.2
Identities = 7/39 (17%), Positives = 16/39 (41%)
Query: 39 SLGRNPSEAELEEMIREVDPEGKGIIDFPHFLELMMKKV 77
S G + +++ + +E + G I + LM +
Sbjct: 114 STGFDIDPEDVDYVRKEAESRGFVIFYSGYSWHLMNRGE 152
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 23.4 bits (51), Expect = 9.6
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 41 GRNPSEAELEEMI 53
GR +E M+
Sbjct: 283 GRPAEIKGVEHMV 295
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.139 0.390
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,319,964
Number of extensions: 72266
Number of successful extensions: 855
Number of sequences better than 10.0: 1
Number of HSP's gapped: 563
Number of HSP's successfully gapped: 304
Length of query: 77
Length of database: 6,701,793
Length adjustment: 46
Effective length of query: 31
Effective length of database: 5,417,427
Effective search space: 167940237
Effective search space used: 167940237
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)