BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10246
(287 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PIF6|MYO7B_HUMAN Unconventional myosin-VIIb OS=Homo sapiens GN=MYO7B PE=2 SV=2
Length = 2116
Score = 38.1 bits (87), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 16/122 (13%)
Query: 128 ELPTNAFGVENNVQCSWILSTQASSGCLLINSATGYAMSGYQDTRLYSGAILVMKVLQSV 187
ELP + F + NN C + + C +I+ +G +G +T L+++ L ++
Sbjct: 129 ELPPHVFAIANN--CYFSMKRNKRDQCCIISGESG---AGKTET-----TKLILQFLATI 178
Query: 188 QIFKIGKWLEISVLGSPDVKKVIFSPWSVRNVRAMKFARDINIKFLWIPSHCGIVENERV 247
W+E VL + + + + ++RN + +F + I+I F PS G++E R+
Sbjct: 179 S--GQHSWIEQQVLEANPILEAFGNAKTIRNDNSSRFGKYIDIYF--NPS--GVIEGARI 232
Query: 248 DQ 249
+Q
Sbjct: 233 EQ 234
>sp|B3Q6U1|RNH_RHOPT Ribonuclease H OS=Rhodopseudomonas palustris (strain TIE-1) GN=rnhA
PE=3 SV=1
Length = 155
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 230 IKFLWIPSHCGIVENERVDQAAKNSIYAQLLKSVV 264
I++ W+ H G ENER DQ A++ + +KS V
Sbjct: 120 IRWHWVKGHAGHAENERADQLARDGLTENRMKSRV 154
>sp|Q6N1Y3|RNH_RHOPA Ribonuclease H OS=Rhodopseudomonas palustris (strain ATCC BAA-98 /
CGA009) GN=rnhA PE=3 SV=1
Length = 155
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 230 IKFLWIPSHCGIVENERVDQAAKNSIYAQLLKSVV 264
I++ W+ H G ENER DQ A++ + +KS V
Sbjct: 120 IRWHWVKGHAGHAENERADQLARDGLTENRMKSRV 154
>sp|Q131J2|RNH_RHOPS Ribonuclease H OS=Rhodopseudomonas palustris (strain BisB5) GN=rnhA
PE=3 SV=1
Length = 150
Score = 35.4 bits (80), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 230 IKFLWIPSHCGIVENERVDQAAKNSIYAQLLKSVV 264
+++ W+ H G ENER DQ A++ + LKS +
Sbjct: 115 VRWHWVKGHAGHDENERADQLARDGLTKHRLKSRI 149
>sp|A4J7B3|RNH_DESRM Ribonuclease H OS=Desulfotomaculum reducens (strain MI-1) GN=rnhA
PE=3 SV=1
Length = 159
Score = 35.0 bits (79), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 220 RAMKFARDINIKFLWIPSHCGIVENERVDQAA 251
R +K N+KF W+ H G ENER DQ A
Sbjct: 114 RLLKLCEFHNVKFNWVKGHAGHPENERCDQLA 145
>sp|Q2J0F8|RNH_RHOP2 Ribonuclease H OS=Rhodopseudomonas palustris (strain HaA2) GN=rnhA
PE=3 SV=1
Length = 161
Score = 34.3 bits (77), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 230 IKFLWIPSHCGIVENERVDQAAKNSIYAQLLKSVV 264
+++ W+ H G ENER DQ A++ + +KS +
Sbjct: 126 VRWHWVKGHAGHDENERADQLARDGLTENRMKSRI 160
>sp|Q89UU3|RNH_BRAJA Ribonuclease H OS=Bradyrhizobium japonicum (strain USDA 110)
GN=rnhA PE=3 SV=1
Length = 154
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 230 IKFLWIPSHCGIVENERVDQAAKNSIYAQLLKSVVVK 266
+++ W+ H G ENER DQ A++ I L+ V +
Sbjct: 118 VRWHWVKGHAGHPENERADQLARDGIVKARLQQRVAE 154
>sp|Q28970|MYO7A_PIG Unconventional myosin-VIIa (Fragment) OS=Sus scrofa GN=MYO7A PE=2
SV=1
Length = 566
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 128 ELPTNAFGVENNVQCSWILSTQASSGCLLINSATGYAMSGYQDTRLYSGAILVMKVLQSV 187
E+P + F + +N C + + + C +I+ +G + + T+L +++ L ++
Sbjct: 131 EMPPHIFAIADN--CYFNMKRNSRDQCCIISGESGAGKT--ESTKL------ILQFLAAI 180
Query: 188 QIFKIGKWLEISVLGSPDVKKVIFSPWSVRNVRAMKFARDINIKFLWIPSHCGIVENERV 247
W+E VL + + + + ++RN + +F + I+I F + G +E R+
Sbjct: 181 S--GQHSWIEQQVLEATPILEAFGNAKTIRNDNSSRFGKYIDIHF----NKRGAIEGARI 234
Query: 248 DQ 249
+Q
Sbjct: 235 EQ 236
>sp|A5EAL2|RNH_BRASB Ribonuclease H OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
GN=rnhA PE=3 SV=1
Length = 154
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 230 IKFLWIPSHCGIVENERVDQAAKNSI-YAQLLKSV 263
+ + W+ H G ENER DQ A++ + A+L K+V
Sbjct: 118 VNWHWVKGHAGHAENERADQLARDGVAMARLQKNV 152
>sp|Q5NYP6|RNH_AROAE Ribonuclease H OS=Aromatoleum aromaticum (strain EbN1) GN=rnhA PE=3
SV=1
Length = 153
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 229 NIKFLWIPSHCGIVENERVDQAAKNSIYAQLLKSVVV 265
++++W+ H G VENER D+ A+ + A + V
Sbjct: 115 QVQWVWVRGHAGHVENERADELARRGVDAVRRQGAAV 151
>sp|P11204|POL_EIAV9 Pol polyprotein OS=Equine infectious anemia virus (isolate 1369)
GN=pol PE=1 SV=1
Length = 1146
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 212 SPW--SVRNVRAMKFARDINIKFLWIPSHCGIVENERVDQAAK 252
SPW ++N+R + + F W+P H GI N+ D+AAK
Sbjct: 699 SPWWPIIQNIREKEI-----VYFAWVPGHKGICGNQLADEAAK 736
>sp|P32542|POL_EIAVC Pol polyprotein OS=Equine infectious anemia virus (isolate CL22)
GN=pol PE=1 SV=1
Length = 1146
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 212 SPW--SVRNVRAMKFARDINIKFLWIPSHCGIVENERVDQAAK 252
SPW ++N+R + + F W+P H GI N+ D+AAK
Sbjct: 699 SPWWPIIQNIREKEI-----VYFAWVPGHKGICGNQLADEAAK 736
>sp|Q08885|RNH_BUCAP Ribonuclease H OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=rnhA PE=3 SV=1
Length = 161
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 219 VRAMKFARDINIKFLWIPSHCGIVENERVDQAAKNSIYAQLLKSVVVKDVIIQSK 273
+R ++ +I + W+ +H G +ENER D+ A+ S + +K ++ Q+K
Sbjct: 105 LRINAVIKNHHITWFWVKAHMGHLENERCDKIARQSAQSPSVKDFFYENNFYQNK 159
>sp|B2VHJ5|RNH_ERWT9 Ribonuclease H OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99)
GN=rnhA PE=3 SV=1
Length = 155
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 229 NIKFLWIPSHCGIVENERVDQAAKNSIYAQLLKSV 263
+I + W+ H G VENER D+ A+N+ L V
Sbjct: 115 DITWKWVKGHAGHVENERCDELARNAAGNPTLDDV 149
>sp|Q7VRU3|SYE_BLOFL Glutamate--tRNA ligase OS=Blochmannia floridanus GN=gltX PE=3 SV=1
Length = 483
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 38 PRLAGHSRSACQFQNNEILEKDSPVSAHRILFLL--LNPDCNDPSFFLPDPGSFEKDNDN 95
P+ G R+ C F+NN +L + + + + +++ NPD SF+ G DN
Sbjct: 120 PKYDGRCRTICMFKNNAMLNTNRIIDSDKGSYVVRFCNPDVGKVSFYDQVRGMITFDNCE 179
Query: 96 ISSVYLVSRSESI 108
+ + ++ RS +
Sbjct: 180 LDDI-IIQRSNGV 191
>sp|Q17LW0|MYO7A_AEDAE Myosin-VIIa OS=Aedes aegypti GN=ck PE=3 SV=1
Length = 2163
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/124 (20%), Positives = 57/124 (45%), Gaps = 20/124 (16%)
Query: 128 ELPTNAFGVENNVQCSWILSTQASSGCLLINSATGYAMSGYQDTRLYSGAILVMKVLQSV 187
ELP + F + +N + + C++I+ +G + L+++ L ++
Sbjct: 122 ELPPHIFAIGDNSYAN--MRRYGQDQCIVISGESGAGKT--------ESTKLILQYLAAI 171
Query: 188 QIFKIGK--WLEISVLGSPDVKKVIFSPWSVRNVRAMKFARDINIKFLWIPSHCGIVENE 245
GK W+E +L + + + + +VRN + +F + I+I F ++ G++E
Sbjct: 172 S----GKHSWIEQQILEANPILEAFGNAKTVRNDNSSRFGKYIDIHF----NNSGVIEGA 223
Query: 246 RVDQ 249
++Q
Sbjct: 224 EIEQ 227
>sp|Q9V3Z6|MYO7A_DROME Myosin-VIIa OS=Drosophila melanogaster GN=ck PE=1 SV=1
Length = 2167
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/124 (20%), Positives = 56/124 (45%), Gaps = 20/124 (16%)
Query: 128 ELPTNAFGVENNVQCSWILSTQASSGCLLINSATGYAMSGYQDTRLYSGAILVMKVLQSV 187
ELP + F + +N + C++I+ +G + L+++ L ++
Sbjct: 127 ELPPHIFAIGDNAYAH--MKRYRQDQCIVISGESGAGKT--------ESTKLILQYLAAI 176
Query: 188 QIFKIGK--WLEISVLGSPDVKKVIFSPWSVRNVRAMKFARDINIKFLWIPSHCGIVENE 245
GK W+E +L + + + + ++RN + +F + I+I F S G++E
Sbjct: 177 S----GKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHF----SANGVIEGA 228
Query: 246 RVDQ 249
+++Q
Sbjct: 229 KIEQ 232
>sp|C4LC60|RNH_TOLAT Ribonuclease H OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=rnhA
PE=3 SV=1
Length = 154
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 229 NIKFLWIPSHCGIVENERVDQAAKNSIYA 257
++++ W+ H G ENER D+ A+N+ A
Sbjct: 115 DVEWFWVKGHSGHPENERCDELARNAALA 143
>sp|Q29P71|MYO7A_DROPS Myosin-VIIa OS=Drosophila pseudoobscura pseudoobscura GN=ck PE=3
SV=1
Length = 2168
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/124 (20%), Positives = 56/124 (45%), Gaps = 20/124 (16%)
Query: 128 ELPTNAFGVENNVQCSWILSTQASSGCLLINSATGYAMSGYQDTRLYSGAILVMKVLQSV 187
ELP + F + +N + C++I+ +G + L+++ L ++
Sbjct: 127 ELPPHIFAIGDNAYAH--MKRYLQDQCIVISGESGAGKT--------ESTKLILQYLAAI 176
Query: 188 QIFKIGK--WLEISVLGSPDVKKVIFSPWSVRNVRAMKFARDINIKFLWIPSHCGIVENE 245
GK W+E +L + + + + ++RN + +F + I+I F S G++E
Sbjct: 177 S----GKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHF----SANGVIEGA 228
Query: 246 RVDQ 249
+++Q
Sbjct: 229 KIEQ 232
>sp|Q5FUH9|RNH_GLUOX Ribonuclease H OS=Gluconobacter oxydans (strain 621H) GN=rnhA PE=3
SV=1
Length = 150
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 220 RAMKFARDINIKFLWIPSHCGIVENERVDQAA 251
R ++ A+ I +LW+ H G NERVDQ A
Sbjct: 112 RILEAAKPHEIDWLWVKGHSGDENNERVDQLA 143
>sp|P03371|POL_EIAVY Pol polyprotein OS=Equine infectious anemia virus (strain Wyoming)
GN=pol PE=3 SV=1
Length = 1145
Score = 31.6 bits (70), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 212 SPW--SVRNVRAMKFARDINIKFLWIPSHCGIVENERVDQAAK 252
+PW ++N+R + + F W+P H GI N+ D+AAK
Sbjct: 698 NPWWPIIQNIREKEI-----VYFAWVPGHKGIYGNQLADEAAK 735
>sp|Q5HSF7|RNH_CAMJR Ribonuclease H OS=Campylobacter jejuni (strain RM1221) GN=rnhA PE=3
SV=1
Length = 146
Score = 31.6 bits (70), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 222 MKFARDINIKFLWIPSHCGIVENERVDQAAKNS 254
+K A+ IK W+ +H G +ENER D A+ +
Sbjct: 102 IKVAKSHKIKAFWVKAHNGHLENERCDTLAREA 134
>sp|A1W1N8|RNH_CAMJJ Ribonuclease H OS=Campylobacter jejuni subsp. jejuni serotype
O:23/36 (strain 81-176) GN=rnhA PE=3 SV=1
Length = 146
Score = 31.6 bits (70), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 222 MKFARDINIKFLWIPSHCGIVENERVDQAAKNS 254
+K A+ IK W+ +H G +ENER D A+ +
Sbjct: 102 IKVAKSHKIKAFWVKAHNGHLENERCDTLAREA 134
>sp|Q9PM39|RNH_CAMJE Ribonuclease HI OS=Campylobacter jejuni subsp. jejuni serotype O:2
(strain NCTC 11168) GN=rnhA PE=1 SV=1
Length = 146
Score = 31.6 bits (70), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 222 MKFARDINIKFLWIPSHCGIVENERVDQAAKNS 254
+K A+ IK W+ +H G +ENER D A+ +
Sbjct: 102 IKVAKSHKIKAFWVKAHNGHLENERCDTLAREA 134
>sp|A8FNU8|RNH_CAMJ8 Ribonuclease H OS=Campylobacter jejuni subsp. jejuni serotype O:6
(strain 81116 / NCTC 11828) GN=rnhA PE=3 SV=1
Length = 146
Score = 31.6 bits (70), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 222 MKFARDINIKFLWIPSHCGIVENERVDQAAKNS 254
+K A+ IK W+ +H G +ENER D A+ +
Sbjct: 102 IKVAKSHKIKAFWVKAHNGHLENERCDTLAREA 134
>sp|Q197A5|VF349_IIV3 Putative transcription elongation factor S-II-like protein 055R
OS=Invertebrate iridescent virus 3 GN=IIV3-055R PE=3
SV=1
Length = 137
Score = 31.2 bits (69), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 82 FLPDPGSFEKDNDNISSVYLVSRSESIARLARYG--KSAWFDLQKAGLELPTNAFGVENN 139
F P+ ++ND I+ Y VS E + R + K WF Q ++ PT F +N
Sbjct: 73 FQPEQQKISEENDFITCPYEVS--EGVLRCGKCDCTKILWFSKQTRSMDEPTTIFASCSN 130
Query: 140 VQCSW 144
+ W
Sbjct: 131 CKTRW 135
>sp|Q1H190|RNH_METFK Ribonuclease H OS=Methylobacillus flagellatus (strain KT / ATCC
51484 / DSM 6875) GN=rnhA PE=3 SV=1
Length = 151
Score = 31.2 bits (69), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 18/98 (18%)
Query: 172 RLYSGAILVMK-VLQSVQIFKIGKWLEISVLGSPDVKKVIFSPWSVRNVRAMK----FAR 226
R+Y+ ++ V K + + V +K WL + D K V+NV K +
Sbjct: 67 RIYTDSVYVQKGITEWVHSWKARNWL------TSDRK-------PVKNVDLWKALDSLVQ 113
Query: 227 DINIKFLWIPSHCGIVENERVDQAAKNSIYAQLLKSVV 264
++++W+ H G V NER D A + L + VV
Sbjct: 114 QHQVEWVWVKGHAGNVGNERADALANKGVDQVLGREVV 151
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,142,334
Number of Sequences: 539616
Number of extensions: 3817729
Number of successful extensions: 7865
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 7847
Number of HSP's gapped (non-prelim): 31
length of query: 287
length of database: 191,569,459
effective HSP length: 116
effective length of query: 171
effective length of database: 128,974,003
effective search space: 22054554513
effective search space used: 22054554513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)