Query psy10246
Match_columns 287
No_of_seqs 177 out of 1083
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 21:36:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10246.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10246hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06548 ribonuclease H; Provi 99.9 1E-22 2.2E-27 177.0 7.5 119 141-262 4-147 (161)
2 COG0328 RnhA Ribonuclease HI [ 99.9 4.4E-21 9.5E-26 166.2 11.3 115 141-258 2-146 (154)
3 PRK08719 ribonuclease H; Revie 99.8 1.8E-21 4E-26 166.0 7.1 115 139-256 1-146 (147)
4 PRK00203 rnhA ribonuclease H; 99.8 2.6E-21 5.6E-26 163.8 6.5 116 142-262 3-147 (150)
5 PF00075 RNase_H: RNase H; In 99.8 2.7E-18 5.9E-23 138.3 8.3 108 141-256 2-132 (132)
6 KOG3752|consensus 99.6 9E-15 1.9E-19 141.2 9.7 112 143-257 213-365 (371)
7 cd06222 RnaseH RNase H (RNase 99.5 2.8E-13 6.1E-18 103.5 11.5 108 144-255 1-130 (130)
8 PRK13907 rnhA ribonuclease H; 99.3 1E-11 2.2E-16 101.6 9.6 102 143-256 2-126 (128)
9 PRK07238 bifunctional RNase H/ 99.0 1.7E-09 3.7E-14 103.4 11.3 108 142-257 2-132 (372)
10 PRK07708 hypothetical protein; 99.0 2.4E-09 5.1E-14 97.5 11.3 116 137-260 68-211 (219)
11 PF13456 RVT_3: Reverse transc 98.1 2.3E-05 4.9E-10 58.4 7.7 76 175-256 4-86 (87)
12 COG0296 GlgB 1,4-alpha-glucan 75.3 4.2 9.1E-05 43.0 4.8 40 208-247 208-247 (628)
13 PF05380 Peptidase_A17: Pao re 62.5 12 0.00026 32.1 4.3 15 175-189 129-143 (159)
14 PF00336 DNA_pol_viral_C: DNA 61.2 28 0.00062 32.6 6.6 53 175-238 128-183 (245)
15 TIGR02402 trehalose_TreZ malto 43.2 95 0.0021 32.1 7.8 68 177-244 110-190 (542)
16 PRK10933 trehalose-6-phosphate 33.1 1.6E+02 0.0035 30.5 7.6 66 176-241 31-108 (551)
17 PRK12568 glycogen branching en 29.8 60 0.0013 35.2 4.0 34 211-244 316-349 (730)
18 TIGR01515 branching_enzym alph 29.7 2E+02 0.0044 30.1 7.8 68 178-245 156-237 (613)
19 PRK12313 glycogen branching en 29.6 2.1E+02 0.0046 30.0 7.9 35 210-244 216-250 (633)
20 PRK05402 glycogen branching en 28.8 2.2E+02 0.0048 30.5 7.9 68 177-244 264-345 (726)
21 PRK14705 glycogen branching en 24.6 87 0.0019 36.0 4.2 34 210-243 811-844 (1224)
22 PLN02960 alpha-amylase 24.5 2.4E+02 0.0053 31.5 7.4 61 182-242 421-494 (897)
23 PLN03244 alpha-amylase; Provis 24.0 1E+02 0.0022 34.2 4.4 35 209-243 436-470 (872)
24 PRK10785 maltodextrin glucosid 22.3 3E+02 0.0066 28.8 7.4 68 175-242 176-254 (598)
25 TIGR02403 trehalose_treC alpha 22.3 3.2E+02 0.007 28.2 7.5 67 176-242 25-103 (543)
26 PF09547 Spore_IV_A: Stage IV 22.3 54 0.0012 33.9 1.9 38 113-151 116-156 (492)
27 PRK14706 glycogen branching en 21.4 1.1E+02 0.0024 32.5 4.1 33 211-243 214-246 (639)
No 1
>PRK06548 ribonuclease H; Provisional
Probab=99.87 E-value=1e-22 Score=177.02 Aligned_cols=119 Identities=16% Similarity=0.116 Sum_probs=87.6
Q ss_pred CeEEEEEcCCCCCCCCCCCceEEEEEecCC----cch---h---HHHHHHHHHHHHchhc-------CCCeEEE------
Q psy10246 141 QCSWILSTQASSGCLLINSATGYAMSGYQD----TRL---Y---SGAILVMKVLQSVQIF-------KIGKWLE------ 197 (287)
Q Consensus 141 ~~i~IYTD~GS~~C~k~~G~vG~Avv~~~~----~~L---~---AEL~AIl~ALe~a~~~-------~~sk~vI------ 197 (287)
..+.|||| || |.+++|++|||++.... +.. + |||+|+++||+.+... .||+|++
T Consensus 4 ~~~~IytD-Ga--~~gnpg~~G~g~~~~~~~~~~g~~~~~TNnraEl~Aii~aL~~~~~~~~~v~I~TDS~yvi~~i~~W 80 (161)
T PRK06548 4 NEIIAATD-GS--SLANPGPSGWAWYVDENTWDSGGWDIATNNIAELTAVRELLIATRHTDRPILILSDSKYVINSLTKW 80 (161)
T ss_pred CEEEEEEe-ec--cCCCCCceEEEEEEeCCcEEccCCCCCCHHHHHHHHHHHHHHhhhcCCceEEEEeChHHHHHHHHHH
Confidence 34889999 88 99999999999654332 111 1 9999999999876532 2333333
Q ss_pred EecccCCCcccCCCChHHHHHHHHHHhh--CCCceEEEEeccCCCCccchHHHHHHHHHHhhccccc
Q psy10246 198 ISVLGSPDVKKVIFSPWSVRNVRAMKFA--RDINIKFLWIPSHCGIVENERVDQAAKNSIYAQLLKS 262 (287)
Q Consensus 198 I~aL~n~~~K~~~~~p~~I~~ii~eL~~--~g~~V~f~WVPGHsGI~GNE~AD~LAK~Aa~~p~~~~ 262 (287)
+..|++..|++..+.|+.++++++++.+ +...|+|.|||||+|++|||.||+||++|+......+
T Consensus 81 ~~~Wk~~gWk~s~G~pV~N~dL~~~l~~l~~~~~v~~~wVkgHsg~~gNe~aD~LA~~aa~~~~~~~ 147 (161)
T PRK06548 81 VYSWKMRKWRKADGKPVLNQEIIQEIDSLMENRNIRMSWVNAHTGHPLNEAADSLARQAANNFSTRS 147 (161)
T ss_pred HHHHHHCCCcccCCCccccHHHHHHHHHHHhcCceEEEEEecCCCCHHHHHHHHHHHHHHHHhcccC
Confidence 1233333477777788888888877642 3368999999999999999999999999997655443
No 2
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]
Probab=99.85 E-value=4.4e-21 Score=166.20 Aligned_cols=115 Identities=20% Similarity=0.265 Sum_probs=87.3
Q ss_pred CeEEEEEcCCCCCCCCCCCceEEEEE-ecCC-cc-h-------h---HHHHHHHHHHHHchhc--------CCCeEEE--
Q psy10246 141 QCSWILSTQASSGCLLINSATGYAMS-GYQD-TR-L-------Y---SGAILVMKVLQSVQIF--------KIGKWLE-- 197 (287)
Q Consensus 141 ~~i~IYTD~GS~~C~k~~G~vG~Avv-~~~~-~~-L-------~---AEL~AIl~ALe~a~~~--------~~sk~vI-- 197 (287)
..+.|||| || |++|||++|||++ .+.. .+ + + ||++|++.||+.+.+. +||+|++
T Consensus 2 ~~v~if~D-Ga--~~gNpG~gG~g~vl~~~~~~~~~s~~~~~tTNNraEl~A~i~AL~~l~~~~~~~v~l~tDS~yv~~~ 78 (154)
T COG0328 2 KKVEIFTD-GA--CLGNPGPGGWGAVLRYGDGEKELSGGEGRTTNNRAELRALIEALEALKELGACEVTLYTDSKYVVEG 78 (154)
T ss_pred CceEEEec-Cc--cCCCCCCceEEEEEEcCCceEEEeeeeecccChHHHHHHHHHHHHHHHhcCCceEEEEecHHHHHHH
Confidence 35889999 88 9999999999955 3333 11 1 1 9999999999999864 3455554
Q ss_pred Ee-cccCC---CcccCCCChHHHHHHHHHHh--hCCC-ceEEEEeccCCCCccchHHHHHHHHHHhhc
Q psy10246 198 IS-VLGSP---DVKKVIFSPWSVRNVRAMKF--ARDI-NIKFLWIPSHCGIVENERVDQAAKNSIYAQ 258 (287)
Q Consensus 198 I~-aL~n~---~~K~~~~~p~~I~~ii~eL~--~~g~-~V~f~WVPGHsGI~GNE~AD~LAK~Aa~~p 258 (287)
++ ++.+| .|+.....|+.++++++++. ...+ .|.+.|||||+|+++||+||+||++|+..+
T Consensus 79 i~~w~~~w~~~~w~~~~~~pvkn~dl~~~~~~~~~~~~~v~~~WVkgH~g~~~NeraD~LA~~~~~~~ 146 (154)
T COG0328 79 ITRWIVKWKKNGWKTADKKPVKNKDLWEELDELLKRHELVFWEWVKGHAGHPENERADQLAREAARAA 146 (154)
T ss_pred HHHHHhhccccCccccccCccccHHHHHHHHHHHhhCCeEEEEEeeCCCCChHHHHHHHHHHHHHHhh
Confidence 33 22333 36666667888888887664 2334 899999999999999999999999999876
No 3
>PRK08719 ribonuclease H; Reviewed
Probab=99.84 E-value=1.8e-21 Score=166.05 Aligned_cols=115 Identities=12% Similarity=0.052 Sum_probs=83.9
Q ss_pred CCCeEEEEEcCCCCCCCCCCC---ceEEEEEecC-C------cc--h----h---HHHHHHHHHHHHchhc----CCCeE
Q psy10246 139 NVQCSWILSTQASSGCLLINS---ATGYAMSGYQ-D------TR--L----Y---SGAILVMKVLQSVQIF----KIGKW 195 (287)
Q Consensus 139 ~~~~i~IYTD~GS~~C~k~~G---~vG~Avv~~~-~------~~--L----~---AEL~AIl~ALe~a~~~----~~sk~ 195 (287)
|...+.|||| || |..+++ ++|||++.+. + .. + + ||++|++.||+.+... ++|+|
T Consensus 1 ~~~~~~iYtD-Gs--~~~n~~~~~~~G~G~vv~~~~~~~~~~~~~~~~~~~Tnn~aEl~A~~~aL~~~~~~~~i~tDS~y 77 (147)
T PRK08719 1 MRASYSIYID-GA--APNNQHGCVRGGIGLVVYDEAGEIVDEQSITVNRYTDNAELELLALIEALEYARDGDVIYSDSDY 77 (147)
T ss_pred CCceEEEEEe-cc--cCCCCCCCCCcEEEEEEEeCCCCeeEEEEecCCCCccHHHHHHHHHHHHHHHcCCCCEEEechHH
Confidence 4567899999 88 877776 5788865321 1 01 1 1 9999999999998763 34455
Q ss_pred EE------EecccCCCcccCCCChHHHHHHHHHHh--hCCCceEEEEeccCCCCccchHHHHHHHHHHh
Q psy10246 196 LE------ISVLGSPDVKKVIFSPWSVRNVRAMKF--ARDINIKFLWIPSHCGIVENERVDQAAKNSIY 256 (287)
Q Consensus 196 vI------I~aL~n~~~K~~~~~p~~I~~ii~eL~--~~g~~V~f~WVPGHsGI~GNE~AD~LAK~Aa~ 256 (287)
++ +..|+...|+++.+.+..++++++.+. .+...|+|.|||||+|++|||.||+||++|++
T Consensus 78 vi~~i~~~~~~W~~~~w~~s~g~~v~n~dl~~~i~~l~~~~~i~~~~VkgH~g~~~Ne~aD~lA~~a~~ 146 (147)
T PRK08719 78 CVRGFNEWLDTWKQKGWRKSDKKPVANRDLWQQVDELRARKYVEVEKVTAHSGIEGNEAADMLAQAAAE 146 (147)
T ss_pred HHHHHHHHHHHHHhCCcccCCCcccccHHHHHHHHHHhCCCcEEEEEecCCCCChhHHHHHHHHHHHhh
Confidence 44 223444446666667877878776653 23578999999999999999999999999975
No 4
>PRK00203 rnhA ribonuclease H; Reviewed
Probab=99.84 E-value=2.6e-21 Score=163.80 Aligned_cols=116 Identities=17% Similarity=0.150 Sum_probs=82.7
Q ss_pred eEEEEEcCCCCCCCCCCCceEEEEEec-CCc------chh------HHHHHHHHHHHHchhcCCCeEEE-------Eecc
Q psy10246 142 CSWILSTQASSGCLLINSATGYAMSGY-QDT------RLY------SGAILVMKVLQSVQIFKIGKWLE-------ISVL 201 (287)
Q Consensus 142 ~i~IYTD~GS~~C~k~~G~vG~Avv~~-~~~------~L~------AEL~AIl~ALe~a~~~~~sk~vI-------I~aL 201 (287)
++.|||| || |..+++.+|||++.. .+. ..+ |||+|++.||+.+... ..+.| ++.+
T Consensus 3 ~v~iytD-Gs--~~~n~~~~g~g~v~~~~~~~~~~~~~~~~~TN~~aEL~Ai~~AL~~~~~~--~~v~I~tDS~yvi~~i 77 (150)
T PRK00203 3 QVEIYTD-GA--CLGNPGPGGWGAILRYKGHEKELSGGEALTTNNRMELMAAIEALEALKEP--CEVTLYTDSQYVRQGI 77 (150)
T ss_pred eEEEEEE-ec--ccCCCCceEEEEEEEECCeeEEEecCCCCCcHHHHHHHHHHHHHHHcCCC--CeEEEEECHHHHHHHH
Confidence 5889999 98 888889999996532 221 111 9999999999988642 33444 1222
Q ss_pred c-------CCCcccCCCChHHHHHHHHHHhh--CCCceEEEEeccCCCCccchHHHHHHHHHHhhccccc
Q psy10246 202 G-------SPDVKKVIFSPWSVRNVRAMKFA--RDINIKFLWIPSHCGIVENERVDQAAKNSIYAQLLKS 262 (287)
Q Consensus 202 ~-------n~~~K~~~~~p~~I~~ii~eL~~--~g~~V~f~WVPGHsGI~GNE~AD~LAK~Aa~~p~~~~ 262 (287)
. ...|++..+.+..++++++++.. ...+|.|.|||||+|++|||.||+|||+|+..+..++
T Consensus 78 ~~w~~~Wk~~~~~~~~g~~v~n~dl~~~i~~l~~~~~v~~~wV~~H~~~~~N~~AD~lA~~a~~~~~~~~ 147 (150)
T PRK00203 78 TEWIHGWKKNGWKTADKKPVKNVDLWQRLDAALKRHQIKWHWVKGHAGHPENERCDELARAGAEEATLED 147 (150)
T ss_pred HHHHHHHHHcCCcccCCCccccHHHHHHHHHHhccCceEEEEecCCCCCHHHHHHHHHHHHHHHHhhhcc
Confidence 2 22355555566666666655432 3478999999999999999999999999998765544
No 5
>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site. This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....
Probab=99.75 E-value=2.7e-18 Score=138.31 Aligned_cols=108 Identities=23% Similarity=0.337 Sum_probs=72.7
Q ss_pred CeEEEEEcCCCCCCCCCCCceEEEEEecCC----cchh------HHHHHHHHHHHHchhcCCCeEEE-------EecccC
Q psy10246 141 QCSWILSTQASSGCLLINSATGYAMSGYQD----TRLY------SGAILVMKVLQSVQIFKIGKWLE-------ISVLGS 203 (287)
Q Consensus 141 ~~i~IYTD~GS~~C~k~~G~vG~Avv~~~~----~~L~------AEL~AIl~ALe~a~~~~~sk~vI-------I~aL~n 203 (287)
+.+.|||| || |..+++.+|+|++.+.+ ..++ |||+||++||+.+ . ...+.| +..+..
T Consensus 2 ~~~~iytD-gS--~~~~~~~~~~g~v~~~~~~~~~~~~~~s~~~aEl~Ai~~AL~~~-~--~~~v~I~tDS~~v~~~l~~ 75 (132)
T PF00075_consen 2 KAIIIYTD-GS--CRPNPGKGGAGYVVWGGRNFSFRLGGQSNNRAELQAIIEALKAL-E--HRKVTIYTDSQYVLNALNK 75 (132)
T ss_dssp TSEEEEEE-EE--ECTTTTEEEEEEEEETTEEEEEEEESECHHHHHHHHHHHHHHTH-S--TSEEEEEES-HHHHHHHHT
T ss_pred CcEEEEEe-CC--ccCCCCceEEEEEEECCeEEEecccccchhhhheehHHHHHHHh-h--cccccccccHHHHHHHHHH
Confidence 56899999 99 77778877888654433 1221 9999999999944 2 256666 222333
Q ss_pred C----CcccCC-CChHHHHHHHHHHhhCCCceEEEEeccCCCC-ccchHHHHHHHHHHh
Q psy10246 204 P----DVKKVI-FSPWSVRNVRAMKFARDINIKFLWIPSHCGI-VENERVDQAAKNSIY 256 (287)
Q Consensus 204 ~----~~K~~~-~~p~~I~~ii~eL~~~g~~V~f~WVPGHsGI-~GNE~AD~LAK~Aa~ 256 (287)
+ .|+... ..+.. .++++.+ .++..|.|.|||||+|+ .|||+||+|||+|+.
T Consensus 76 ~~~~~~~~~~~~~~~i~-~~i~~~~-~~~~~v~~~~V~~H~~~~~~N~~aD~lAk~a~~ 132 (132)
T PF00075_consen 76 WLHGNGWKKTSNGRPIK-NEIWELL-SRGIKVRFRWVPGHSGVPQGNERADRLAKEAAQ 132 (132)
T ss_dssp HHHHTTSBSCTSSSBHT-HHHHHHH-HHSSEEEEEESSSSSSSHHHHHHHHHHHHHHHH
T ss_pred hccccccccccccccch-hheeecc-ccceEEeeeeccCcCCCchhHHHHHHHHHHhcC
Confidence 1 222221 11221 2444444 45789999999999999 699999999999973
No 6
>KOG3752|consensus
Probab=99.56 E-value=9e-15 Score=141.24 Aligned_cols=112 Identities=17% Similarity=0.100 Sum_probs=78.2
Q ss_pred EEEEEcCCCCCCCCCC---CceEEEEEecCC------cchh--------HHHHHHHHHHHHchhcCCCeEEE-------E
Q psy10246 143 SWILSTQASSGCLLIN---SATGYAMSGYQD------TRLY--------SGAILVMKVLQSVQIFKIGKWLE-------I 198 (287)
Q Consensus 143 i~IYTD~GS~~C~k~~---G~vG~Avv~~~~------~~L~--------AEL~AIl~ALe~a~~~~~sk~vI-------I 198 (287)
.++||| || |+++. ..+||||....+ +++. |||.||++||+.+.+....+++| +
T Consensus 213 ~vvytD-GS--~~~ng~~~~~AGyGvywg~~~e~N~s~pv~~g~qtNnrAEl~Av~~ALkka~~~~~~kv~I~TDS~~~i 289 (371)
T KOG3752|consen 213 QVVYTD-GS--SSGNGRKSSRAGYGVYWGPGHELNVSGPLAGGRQTNNRAELIAAIEALKKARSKNINKVVIRTDSEYFI 289 (371)
T ss_pred eEEEec-Cc--cccCCCCCCcceeEEeeCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhcCCCcEEEEechHHHH
Confidence 789999 99 88753 468999763222 2332 99999999999999877778888 2
Q ss_pred ec----ccCCC---cccCCCCh-----HHHHHHHHH---Hhh--CCCceEEEEeccCCCCccchHHHHHHHHHHhh
Q psy10246 199 SV----LGSPD---VKKVIFSP-----WSVRNVRAM---KFA--RDINIKFLWIPSHCGIVENERVDQAAKNSIYA 257 (287)
Q Consensus 199 ~a----L~n~~---~K~~~~~p-----~~I~~ii~e---L~~--~g~~V~f~WVPGHsGI~GNE~AD~LAK~Aa~~ 257 (287)
++ +++|. |+.....+ +.+.+...+ |.+ ++.+|+|.||+||.||.|||+||.||++++.+
T Consensus 290 ~~l~~wv~~~k~~~~k~~~~~~~i~~~v~n~~~~~e~~~l~q~~~~~~vq~~~V~Gh~gi~gne~Ad~lARkgs~~ 365 (371)
T KOG3752|consen 290 NSLTLWVQGWKKNGWKTSNGSDRICAYVKNQDFFNELDELEQEISNKKVQQEYVGGHSGILGNEMADALARKGSTL 365 (371)
T ss_pred HHHHHHHhhhccCccccccCCCccceeeecchHHHHHHHHHhhhccCceEEEEecCcCCcchHHHHHHHHhhhhhh
Confidence 22 23332 44433333 233333322 221 35899999999999999999999999998654
No 7
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=99.50 E-value=2.8e-13 Score=103.46 Aligned_cols=108 Identities=20% Similarity=0.179 Sum_probs=70.2
Q ss_pred EEEEcCCCCCCCCCCCceEEEEEecCC--------cch-------hHHHHHHHHHHHHchhcCCCeEEE-------Eecc
Q psy10246 144 WILSTQASSGCLLINSATGYAMSGYQD--------TRL-------YSGAILVMKVLQSVQIFKIGKWLE-------ISVL 201 (287)
Q Consensus 144 ~IYTD~GS~~C~k~~G~vG~Avv~~~~--------~~L-------~AEL~AIl~ALe~a~~~~~sk~vI-------I~aL 201 (287)
.+||| || +....+.+|+|++.... ... .+|+.|++.||+.+......++.| +..+
T Consensus 1 ~~~~D-gs--~~~~~~~~g~g~v~~~~~~~~~~~~~~~~~~~s~~~aEl~al~~al~~~~~~~~~~i~i~~Ds~~~~~~~ 77 (130)
T cd06222 1 VIYTD-GS--CRGNPGPAGAGVVLRDPGGEVLLSGGLLGGNTTNNRAELLALIEALELALELGGKKVNIYTDSQYVINAL 77 (130)
T ss_pred CEEec-cc--CCCCCCceEEEEEEEeCCCeEEEeccccCCCCcHHHHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHh
Confidence 38999 98 33444688888553221 111 199999999999998766666666 2334
Q ss_pred cCCCcccCCCChHHHHHHHHHHhhCCCceEEEEeccCCCCccchHHHHHHHHHH
Q psy10246 202 GSPDVKKVIFSPWSVRNVRAMKFARDINIKFLWIPSHCGIVENERVDQAAKNSI 255 (287)
Q Consensus 202 ~n~~~K~~~~~p~~I~~ii~eL~~~g~~V~f~WVPGHsGI~GNE~AD~LAK~Aa 255 (287)
.++.. ........+...+.++..+...+.|.|||+|+|+++|+.||.|||+|.
T Consensus 78 ~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~i~~v~~h~~~~~n~~ad~la~~~~ 130 (130)
T cd06222 78 TGWYE-GKPVKNVDLWQRLLALLKRFHKVRFEWVPGHSGIEGNERADALAKEAA 130 (130)
T ss_pred hcccc-CCChhhHHHHHHHHHHHhCCCeEEEEEcCCCCCCcchHHHHHHHHhhC
Confidence 44321 011111122222333334668899999999999999999999999873
No 8
>PRK13907 rnhA ribonuclease H; Provisional
Probab=99.32 E-value=1e-11 Score=101.59 Aligned_cols=102 Identities=12% Similarity=-0.007 Sum_probs=68.6
Q ss_pred EEEEEcCCCCCCCCCCCceEEEEEec-CCc------ch------hHHHHHHHHHHHHchhcCCCeEEE-------Eeccc
Q psy10246 143 SWILSTQASSGCLLINSATGYAMSGY-QDT------RL------YSGAILVMKVLQSVQIFKIGKWLE-------ISVLG 202 (287)
Q Consensus 143 i~IYTD~GS~~C~k~~G~vG~Avv~~-~~~------~L------~AEL~AIl~ALe~a~~~~~sk~vI-------I~aL~ 202 (287)
+.|||| || |.+++|.+|||++.. ..+ .. .||++|++.||+.+...+..++.+ +..+.
T Consensus 2 ~~iy~D-Ga--~~~~~g~~G~G~vi~~~~~~~~~~~~~~~~tn~~AE~~All~aL~~a~~~g~~~v~i~sDS~~vi~~~~ 78 (128)
T PRK13907 2 IEVYID-GA--SKGNPGPSGAGVFIKGVQPAVQLSLPLGTMSNHEAEYHALLAALKYCTEHNYNIVSFRTDSQLVERAVE 78 (128)
T ss_pred EEEEEe-eC--CCCCCCccEEEEEEEECCeeEEEEecccccCCcHHHHHHHHHHHHHHHhCCCCEEEEEechHHHHHHHh
Confidence 579999 88 888999999996532 211 11 199999999999999877666555 23344
Q ss_pred CCCcccCCCChHHHHHHHHH---HhhCCCceEEEEeccCCCCccchHHHHHHHHHHh
Q psy10246 203 SPDVKKVIFSPWSVRNVRAM---KFARDINIKFLWIPSHCGIVENERVDQAAKNSIY 256 (287)
Q Consensus 203 n~~~K~~~~~p~~I~~ii~e---L~~~g~~V~f~WVPGHsGI~GNE~AD~LAK~Aa~ 256 (287)
+. |+... .+++++++ +..+-..+.|.|||. ++|+.||.||+.|..
T Consensus 79 ~~-~~~~~----~~~~l~~~~~~l~~~f~~~~~~~v~r----~~N~~Ad~LA~~a~~ 126 (128)
T PRK13907 79 KE-YAKNK----MFAPLLEEALQYIKSFDLFFIKWIPS----SQNKVADELARKAIL 126 (128)
T ss_pred HH-HhcCh----hHHHHHHHHHHHHhcCCceEEEEcCc----hhchhHHHHHHHHHh
Confidence 32 11111 22333322 233445677899998 599999999999875
No 9
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=99.03 E-value=1.7e-09 Score=103.38 Aligned_cols=108 Identities=11% Similarity=0.047 Sum_probs=71.9
Q ss_pred eEEEEEcCCCCCCCCCCCceEEEEEe-cCC-c--------ch------hHHHHHHHHHHHHchhcCCCeEEE-------E
Q psy10246 142 CSWILSTQASSGCLLINSATGYAMSG-YQD-T--------RL------YSGAILVMKVLQSVQIFKIGKWLE-------I 198 (287)
Q Consensus 142 ~i~IYTD~GS~~C~k~~G~vG~Avv~-~~~-~--------~L------~AEL~AIl~ALe~a~~~~~sk~vI-------I 198 (287)
.+.|||| || |.+++|.+|+|++. +.+ . .+ .||+.|++.||+.+.+.+..++.+ +
T Consensus 2 ~~~i~~D-Ga--~~~n~g~aG~G~vi~~~~~~~~~~~~~~~~~~~tnn~AE~~All~gL~~a~~~g~~~v~i~~DS~lvi 78 (372)
T PRK07238 2 KVVVEAD-GG--SRGNPGPAGYGAVVWDADRGEVLAERAEAIGRATNNVAEYRGLIAGLEAAAELGATEVEVRMDSKLVV 78 (372)
T ss_pred eEEEEec-CC--CCCCCCceEEEEEEEeCCCCcEEEEeecccCCCCchHHHHHHHHHHHHHHHhCCCCeEEEEeCcHHHH
Confidence 3689999 88 88999999999553 221 1 11 199999999999998876655555 2
Q ss_pred ecccCCCcccCCCChHHHHHHHHHHhhCCCceEEEEeccCCCCccchHHHHHHHHHHhh
Q psy10246 199 SVLGSPDVKKVIFSPWSVRNVRAMKFARDINIKFLWIPSHCGIVENERVDQAAKNSIYA 257 (287)
Q Consensus 199 ~aL~n~~~K~~~~~p~~I~~ii~eL~~~g~~V~f~WVPGHsGI~GNE~AD~LAK~Aa~~ 257 (287)
+.+.+ .|+.....-..+.+.+.++..+-..|.|.|||. ++|+.||.||+.|...
T Consensus 79 ~~i~~-~~~~~~~~l~~~~~~i~~l~~~f~~~~i~~v~r----~~N~~AD~LA~~a~~~ 132 (372)
T PRK07238 79 EQMSG-RWKVKHPDMKPLAAQARELASQFGRVTYTWIPR----ARNAHADRLANEAMDA 132 (372)
T ss_pred HHhCC-CCccCChHHHHHHHHHHHHHhcCCceEEEECCc----hhhhHHHHHHHHHHHh
Confidence 23332 222222122333333344444446899999997 7899999999999753
No 10
>PRK07708 hypothetical protein; Validated
Probab=99.02 E-value=2.4e-09 Score=97.47 Aligned_cols=116 Identities=10% Similarity=0.018 Sum_probs=76.1
Q ss_pred ccCCCeEEEEEcCCCCCCCCCCCceEEEEEec--CCc---------ch----h---HHHHHHHHHHHHchhcCCCe--EE
Q psy10246 137 ENNVQCSWILSTQASSGCLLINSATGYAMSGY--QDT---------RL----Y---SGAILVMKVLQSVQIFKIGK--WL 196 (287)
Q Consensus 137 e~~~~~i~IYTD~GS~~C~k~~G~vG~Avv~~--~~~---------~L----~---AEL~AIl~ALe~a~~~~~sk--~v 196 (287)
+.-++.+.+|+| || |.+++|++|+|++.. .+. .+ . ||..|++.||+.+.+.+.+. +.
T Consensus 68 ~~ep~~~~vY~D-Gs--~~~n~g~aG~GvVI~~~~g~~~~~~~~~~~l~~~~TNN~AEy~Ali~aL~~A~e~g~~~~~V~ 144 (219)
T PRK07708 68 EEEPHEILVYFD-GG--FDKETKLAGLGIVIYYKQGNKRYRIRRNAYIEGIYDNNEAEYAALYYAMQELEELGVKHEPVT 144 (219)
T ss_pred ccCCCcEEEEEe-ec--cCCCCCCcEEEEEEEECCCCEEEEEEeeccccccccCcHHHHHHHHHHHHHHHHcCCCcceEE
Confidence 334467999999 88 667888899996543 121 11 1 99999999999998876544 33
Q ss_pred E-------EecccCCCcccCCCChHHHHHHHHHHhh-CCCceEEEEeccCCCCccchHHHHHHHHHHhhccc
Q psy10246 197 E-------ISVLGSPDVKKVIFSPWSVRNVRAMKFA-RDINIKFLWIPSHCGIVENERVDQAAKNSIYAQLL 260 (287)
Q Consensus 197 I-------I~aL~n~~~K~~~~~p~~I~~ii~eL~~-~g~~V~f~WVPGHsGI~GNE~AD~LAK~Aa~~p~~ 260 (287)
| +..+.+ .|+.+.+....+.+.+.++.. -...+.|.||| -+.|+.||+||+.|+.....
T Consensus 145 I~~DSqlVi~qi~g-~wk~~~~~l~~y~~~i~~l~~~~~l~~~~~~Vp----R~~N~~AD~LAk~Al~~~~~ 211 (219)
T PRK07708 145 FRGDSQVVLNQLAG-EWPCYDEHLNHWLDRIEQKLKQLKLTPVYEPIS----RKQNKEADQLATQALEGTVI 211 (219)
T ss_pred EEeccHHHHHHhCC-CceeCChhHHHHHHHHHHHHhhCCceEEEEECC----chhhhHHHHHHHHHHhcCCC
Confidence 3 223332 344444444444444443332 23457889997 46799999999999986544
No 11
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=98.05 E-value=2.3e-05 Score=58.37 Aligned_cols=76 Identities=17% Similarity=0.122 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHchhcCCCeEEE-------EecccCCCcccCCCChHHHHHHHHHHhhCCCceEEEEeccCCCCccchHH
Q psy10246 175 SGAILVMKVLQSVQIFKIGKWLE-------ISVLGSPDVKKVIFSPWSVRNVRAMKFARDINIKFLWIPSHCGIVENERV 247 (287)
Q Consensus 175 AEL~AIl~ALe~a~~~~~sk~vI-------I~aL~n~~~K~~~~~p~~I~~ii~eL~~~g~~V~f~WVPGHsGI~GNE~A 247 (287)
||+.|++.||+.+.+.+..++.+ ++.+++.. ....... .+..-+..+...-..+.|.||| =++|..|
T Consensus 4 aE~~al~~al~~a~~~g~~~i~v~sDs~~vv~~i~~~~-~~~~~~~-~~~~~i~~~~~~~~~~~~~~i~----r~~N~~A 77 (87)
T PF13456_consen 4 AEALALLEALQLAWELGIRKIIVESDSQLVVDAINGRS-SSRSELR-PLIQDIRSLLDRFWNVSVSHIP----REQNKVA 77 (87)
T ss_dssp HHHHHHHHHHHHHHCCT-SCEEEEES-HHHHHHHTTSS----SCCH-HHHHHHHHHHCCCSCEEEEE------GGGSHHH
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEecCccccccccccc-ccccccc-ccchhhhhhhccccceEEEEEC----hHHhHHH
Confidence 89999999999999988888777 34455432 1112222 2333334444456789999999 7899999
Q ss_pred HHHHHHHHh
Q psy10246 248 DQAAKNSIY 256 (287)
Q Consensus 248 D~LAK~Aa~ 256 (287)
|.|||.|.+
T Consensus 78 ~~LA~~a~~ 86 (87)
T PF13456_consen 78 DALAKFALS 86 (87)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999999864
No 12
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=75.27 E-value=4.2 Score=43.05 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=35.8
Q ss_pred cCCCChHHHHHHHHHHhhCCCceEEEEeccCCCCccchHH
Q psy10246 208 KVIFSPWSVRNVRAMKFARDINIKFLWIPSHCGIVENERV 247 (287)
Q Consensus 208 ~~~~~p~~I~~ii~eL~~~g~~V~f~WVPGHsGI~GNE~A 247 (287)
+..+.|...+.++...++.|..|-+-|||+|-+..||-++
T Consensus 208 sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~d~~~L~ 247 (628)
T COG0296 208 SRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPPDGNYLA 247 (628)
T ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCCCcchhh
Confidence 4566789999999999999999999999999999998765
No 13
>PF05380 Peptidase_A17: Pao retrotransposon peptidase ; InterPro: IPR008042 This signature identifies members of the Pao retrotransposon family.
Probab=62.52 E-value=12 Score=32.06 Aligned_cols=15 Identities=0% Similarity=-0.077 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHchh
Q psy10246 175 SGAILVMKVLQSVQI 189 (287)
Q Consensus 175 AEL~AIl~ALe~a~~ 189 (287)
.||+|++.|.+++..
T Consensus 129 lEL~a~~l~~~l~~~ 143 (159)
T PF05380_consen 129 LELLAALLGVRLANT 143 (159)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998753
No 14
>PF00336 DNA_pol_viral_C: DNA polymerase (viral) C-terminal domain; InterPro: IPR001462 This domain is at the C terminus of hepatitis B-type viruses P proteins and represents a functional domain that controls the RNase H activities of the protein. The domain is always associated with IPR000201 from INTERPRO and .; GO: 0004523 ribonuclease H activity
Probab=61.22 E-value=28 Score=32.65 Aligned_cols=53 Identities=11% Similarity=0.092 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHchhc---CCCeEEEEecccCCCcccCCCChHHHHHHHHHHhhCCCceEEEEeccC
Q psy10246 175 SGAILVMKVLQSVQIF---KIGKWLEISVLGSPDVKKVIFSPWSVRNVRAMKFARDINIKFLWIPSH 238 (287)
Q Consensus 175 AEL~AIl~ALe~a~~~---~~sk~vII~aL~n~~~K~~~~~p~~I~~ii~eL~~~g~~V~f~WVPGH 238 (287)
+||+|+..|.-+.... .|+.+++ .+ |. ...||..--..+.+. ..+.|..||+-
T Consensus 128 aELlaaClAr~~~~~r~l~tDnt~Vl----sr---ky-ts~PW~lac~A~wiL---rgts~~yVPS~ 183 (245)
T PF00336_consen 128 AELLAACLARLMSGARCLGTDNTVVL----SR---KY-TSFPWLLACAANWIL---RGTSFYYVPSK 183 (245)
T ss_pred HHHHHHHHHHhccCCcEEeecCcEEE----ec---cc-ccCcHHHHHHHHHhh---cCceEEEeccc
Confidence 9999999988776431 3444444 11 11 225775544444444 35889999964
No 15
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=43.19 E-value=95 Score=32.08 Aligned_cols=68 Identities=9% Similarity=-0.005 Sum_probs=47.0
Q ss_pred HHHHHHHHHHchhcCCCeEEE--Eecc---cCCC--------cccCCCChHHHHHHHHHHhhCCCceEEEEeccCCCCcc
Q psy10246 177 AILVMKVLQSVQIFKIGKWLE--ISVL---GSPD--------VKKVIFSPWSVRNVRAMKFARDINIKFLWIPSHCGIVE 243 (287)
Q Consensus 177 L~AIl~ALe~a~~~~~sk~vI--I~aL---~n~~--------~K~~~~~p~~I~~ii~eL~~~g~~V~f~WVPGHsGI~G 243 (287)
+.+|+.-|.++++.+.+-+-+ +... .+|. .....+.+...+++++.++++|..|.+-+|..|+|-.+
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~ 189 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYNHFGPEG 189 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccCCCCCcc
Confidence 457778888888877655444 2111 2222 11223346778999999999999999999999998665
Q ss_pred c
Q psy10246 244 N 244 (287)
Q Consensus 244 N 244 (287)
|
T Consensus 190 ~ 190 (542)
T TIGR02402 190 N 190 (542)
T ss_pred c
Confidence 4
No 16
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=33.09 E-value=1.6e+02 Score=30.46 Aligned_cols=66 Identities=15% Similarity=0.052 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHchhcCCCeEEEEecccCCC------------cccCCCChHHHHHHHHHHhhCCCceEEEEeccCCCC
Q psy10246 176 GAILVMKVLQSVQIFKIGKWLEISVLGSPD------------VKKVIFSPWSVRNVRAMKFARDINIKFLWIPSHCGI 241 (287)
Q Consensus 176 EL~AIl~ALe~a~~~~~sk~vII~aL~n~~------------~K~~~~~p~~I~~ii~eL~~~g~~V~f~WVPGHsGI 241 (287)
.+.+|+..|.+++..+.+-+.+.-...++. .-...+.....+.++++++.+|.+|.+-.|+-|++.
T Consensus 31 dl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~s~ 108 (551)
T PRK10933 31 DLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNHTST 108 (551)
T ss_pred CHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCccC
Confidence 678999999999887765544411111111 001122345678899999999999999999999976
No 17
>PRK12568 glycogen branching enzyme; Provisional
Probab=29.80 E-value=60 Score=35.20 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=29.5
Q ss_pred CChHHHHHHHHHHhhCCCceEEEEeccCCCCccc
Q psy10246 211 FSPWSVRNVRAMKFARDINIKFLWIPSHCGIVEN 244 (287)
Q Consensus 211 ~~p~~I~~ii~eL~~~g~~V~f~WVPGHsGI~GN 244 (287)
+.+...+.++.+++.+|..|.+-||+.|++-.++
T Consensus 316 G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~ 349 (730)
T PRK12568 316 GSPDGFAQFVDACHRAGIGVILDWVSAHFPDDAH 349 (730)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEeccccCCcccc
Confidence 4577889999999999999999999999986544
No 18
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=29.72 E-value=2e+02 Score=30.09 Aligned_cols=68 Identities=13% Similarity=0.075 Sum_probs=44.6
Q ss_pred HHHHHHH-HHchhcCCCeEEE--Eecc---cCCC--------cccCCCChHHHHHHHHHHhhCCCceEEEEeccCCCCcc
Q psy10246 178 ILVMKVL-QSVQIFKIGKWLE--ISVL---GSPD--------VKKVIFSPWSVRNVRAMKFARDINIKFLWIPSHCGIVE 243 (287)
Q Consensus 178 ~AIl~AL-e~a~~~~~sk~vI--I~aL---~n~~--------~K~~~~~p~~I~~ii~eL~~~g~~V~f~WVPGHsGI~G 243 (287)
.+|+.-| .++++.+.+-+-+ +..- .+|. .....+.+...++++.+++.+|..|.+-+|+.|+|..+
T Consensus 156 ~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~ 235 (613)
T TIGR01515 156 RELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDD 235 (613)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCcc
Confidence 3555554 7777766654444 1110 1222 11223446778999999999999999999999999765
Q ss_pred ch
Q psy10246 244 NE 245 (287)
Q Consensus 244 NE 245 (287)
+-
T Consensus 236 ~~ 237 (613)
T TIGR01515 236 HG 237 (613)
T ss_pred ch
Confidence 53
No 19
>PRK12313 glycogen branching enzyme; Provisional
Probab=29.61 E-value=2.1e+02 Score=29.95 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=29.9
Q ss_pred CCChHHHHHHHHHHhhCCCceEEEEeccCCCCccc
Q psy10246 210 IFSPWSVRNVRAMKFARDINIKFLWIPSHCGIVEN 244 (287)
Q Consensus 210 ~~~p~~I~~ii~eL~~~g~~V~f~WVPGHsGI~GN 244 (287)
.+.+...++++++++++|..|.+-+|+.|++..++
T Consensus 216 ~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~~ 250 (633)
T PRK12313 216 YGTPEDFMYLVDALHQNGIGVILDWVPGHFPKDDD 250 (633)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCcc
Confidence 34567789999999999999999999999986544
No 20
>PRK05402 glycogen branching enzyme; Provisional
Probab=28.81 E-value=2.2e+02 Score=30.51 Aligned_cols=68 Identities=16% Similarity=0.111 Sum_probs=44.4
Q ss_pred HHHHHHHH-HHchhcCCCeEEE--Eec--c-cCCCc--------ccCCCChHHHHHHHHHHhhCCCceEEEEeccCCCCc
Q psy10246 177 AILVMKVL-QSVQIFKIGKWLE--ISV--L-GSPDV--------KKVIFSPWSVRNVRAMKFARDINIKFLWIPSHCGIV 242 (287)
Q Consensus 177 L~AIl~AL-e~a~~~~~sk~vI--I~a--L-~n~~~--------K~~~~~p~~I~~ii~eL~~~g~~V~f~WVPGHsGI~ 242 (287)
+.+|+.-| .++++.+.+-+-+ +.. . .+|.. ....+.+...+.++++++++|..|.+-||+.|++-.
T Consensus 264 ~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~ 343 (726)
T PRK05402 264 YRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPAHFPKD 343 (726)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
Confidence 45667664 7887766654443 211 0 12220 122334677899999999999999999999999754
Q ss_pred cc
Q psy10246 243 EN 244 (287)
Q Consensus 243 GN 244 (287)
++
T Consensus 344 ~~ 345 (726)
T PRK05402 344 AH 345 (726)
T ss_pred cc
Confidence 33
No 21
>PRK14705 glycogen branching enzyme; Provisional
Probab=24.64 E-value=87 Score=35.99 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=29.2
Q ss_pred CCChHHHHHHHHHHhhCCCceEEEEeccCCCCcc
Q psy10246 210 IFSPWSVRNVRAMKFARDINIKFLWIPSHCGIVE 243 (287)
Q Consensus 210 ~~~p~~I~~ii~eL~~~g~~V~f~WVPGHsGI~G 243 (287)
.+.+...+.++..++.+|..|.+-|||.|.+-.+
T Consensus 811 yGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~ 844 (1224)
T PRK14705 811 FGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDS 844 (1224)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEeccccCCcch
Confidence 3457788999999999999999999999986543
No 22
>PLN02960 alpha-amylase
Probab=24.46 E-value=2.4e+02 Score=31.53 Aligned_cols=61 Identities=13% Similarity=0.005 Sum_probs=41.3
Q ss_pred HHHHHchhcCCCeEEE--Eec---ccCCC--------cccCCCChHHHHHHHHHHhhCCCceEEEEeccCCCCc
Q psy10246 182 KVLQSVQIFKIGKWLE--ISV---LGSPD--------VKKVIFSPWSVRNVRAMKFARDINIKFLWIPSHCGIV 242 (287)
Q Consensus 182 ~ALe~a~~~~~sk~vI--I~a---L~n~~--------~K~~~~~p~~I~~ii~eL~~~g~~V~f~WVPGHsGI~ 242 (287)
+.|.++++.+.+-+-+ +.. -.+|. .....+.+...+.++..++.+|..|.+-||+.|++-.
T Consensus 421 ~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDvV~NH~~~d 494 (897)
T PLN02960 421 KVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAAD 494 (897)
T ss_pred HHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEecccccCCc
Confidence 3477777766655444 211 11222 1123345778899999999999999999999998765
No 23
>PLN03244 alpha-amylase; Provisional
Probab=24.02 E-value=1e+02 Score=34.19 Aligned_cols=35 Identities=9% Similarity=-0.057 Sum_probs=30.1
Q ss_pred CCCChHHHHHHHHHHhhCCCceEEEEeccCCCCcc
Q psy10246 209 VIFSPWSVRNVRAMKFARDINIKFLWIPSHCGIVE 243 (287)
Q Consensus 209 ~~~~p~~I~~ii~eL~~~g~~V~f~WVPGHsGI~G 243 (287)
..+.+...+.++.+++..|..|.+-||++|.+-.+
T Consensus 436 RYGTPeDLK~LVD~aH~~GI~VILDvV~NH~~~d~ 470 (872)
T PLN03244 436 RYGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADE 470 (872)
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEecCccCCCcc
Confidence 34568889999999999999999999999998543
No 24
>PRK10785 maltodextrin glucosidase; Provisional
Probab=22.34 E-value=3e+02 Score=28.76 Aligned_cols=68 Identities=7% Similarity=-0.016 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHchhcCCCeEEE---EecccCCC-c-------ccCCCChHHHHHHHHHHhhCCCceEEEEeccCCCCc
Q psy10246 175 SGAILVMKVLQSVQIFKIGKWLE---ISVLGSPD-V-------KKVIFSPWSVRNVRAMKFARDINIKFLWIPSHCGIV 242 (287)
Q Consensus 175 AEL~AIl~ALe~a~~~~~sk~vI---I~aL~n~~-~-------K~~~~~p~~I~~ii~eL~~~g~~V~f~WVPGHsGI~ 242 (287)
+-+.+|+.-|.++++.+.+-+-+ ..+-.+.. + -..-+.....++++++++++|.+|.+-.|.-|+|..
T Consensus 176 GDl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~ 254 (598)
T PRK10785 176 GDLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDS 254 (598)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCC
Confidence 78999999999999877654444 11111111 0 011123456789999999999999999999999975
No 25
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=22.34 E-value=3.2e+02 Score=28.15 Aligned_cols=67 Identities=10% Similarity=0.058 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHchhcCCCeEEEEecccCCC------------cccCCCChHHHHHHHHHHhhCCCceEEEEeccCCCCc
Q psy10246 176 GAILVMKVLQSVQIFKIGKWLEISVLGSPD------------VKKVIFSPWSVRNVRAMKFARDINIKFLWIPSHCGIV 242 (287)
Q Consensus 176 EL~AIl~ALe~a~~~~~sk~vII~aL~n~~------------~K~~~~~p~~I~~ii~eL~~~g~~V~f~WVPGHsGI~ 242 (287)
-+.+|+.-|.++...+.+-+.+.-...++. .....+.....+.++++++.+|.+|.+-+|+-|++..
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~~~~ 103 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNHTSTE 103 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECccccccc
Confidence 567888889988887665544411111110 0011223456788999999999999999999999743
No 26
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=22.27 E-value=54 Score=33.95 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=27.0
Q ss_pred hhcCCcccc---chhhcccCCCcccccccCCCeEEEEEcCCC
Q psy10246 113 RYGKSAWFD---LQKAGLELPTNAFGVENNVQCSWILSTQAS 151 (287)
Q Consensus 113 ~~~~~~w~~---l~~~~~e~~~~~~~~e~~~~~i~IYTD~GS 151 (287)
|.++++||+ ++..-.|--|..-..+-+.=+++|=|| ||
T Consensus 116 RmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTD-GS 156 (492)
T PF09547_consen 116 RMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTD-GS 156 (492)
T ss_pred eeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecC-CC
Confidence 467999999 333335666665555556667999999 99
No 27
>PRK14706 glycogen branching enzyme; Provisional
Probab=21.40 E-value=1.1e+02 Score=32.45 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=28.6
Q ss_pred CChHHHHHHHHHHhhCCCceEEEEeccCCCCcc
Q psy10246 211 FSPWSVRNVRAMKFARDINIKFLWIPSHCGIVE 243 (287)
Q Consensus 211 ~~p~~I~~ii~eL~~~g~~V~f~WVPGHsGI~G 243 (287)
+.+...+.++.+++.+|..|.+-||+.|.|-.+
T Consensus 214 g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~ 246 (639)
T PRK14706 214 GTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDE 246 (639)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEecccccCcch
Confidence 457788999999999999999999999987543
Done!