RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10246
         (287 letters)



>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus
           [TaxId: 274]}
          Length = 147

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 220 RAMKFARDINIKFLWIPSHCGIVENERVDQAAKNSIYAQ 258
             +       ++F ++  H G  ENERVD+ A+    +Q
Sbjct: 106 ALLLAMAPHRVRFHFVKGHTGHPENERVDREARRQAQSQ 144


>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse
           transcriptase) {Human immunodeficiency virus type 2
           [TaxId: 11709]}
          Length = 126

 Score = 36.8 bits (84), Expect = 7e-04
 Identities = 12/44 (27%), Positives = 18/44 (40%)

Query: 212 SPWSVRNVRAMKFARDINIKFLWIPSHCGIVENERVDQAAKNSI 255
           S   + N    +  +   I   W+P+H GI  N+ VD      I
Sbjct: 83  SESKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 126


>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId:
           562]}
          Length = 152

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 222 MKFARDINIKFLWIPSHCGIVENERVDQAAKNSIYAQLLK 261
                   IK+ W+  H G  ENER D+ A+ +     L+
Sbjct: 106 DAALGQHQIKWEWVKGHAGHPENERADELARAAAMNPTLE 145


>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit
           gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 159

 Score = 29.0 bits (64), Expect = 0.35
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 253 NSIYAQLLKSVVVKDVIIQSKKTI 276
           +S+Y   +KS    D+I  S K +
Sbjct: 3   SSVYTTFMKSHRCYDLIPTSSKLV 26


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0484    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,037,842
Number of extensions: 44733
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 4
Length of query: 287
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 203
Effective length of database: 1,254,276
Effective search space: 254618028
Effective search space used: 254618028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.4 bits)