BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10247
(315 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P11204|POL_EIAV9 Pol polyprotein OS=Equine infectious anemia virus (isolate 1369)
GN=pol PE=1 SV=1
Length = 1146
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 12/128 (9%)
Query: 46 SLFIFTDGTKTATNTGFAYV-SGDLCQTYRLNPLSSIFTAESLAILKCLEYIMSLVIVDN 104
+ I+TDG K AYV S + RL P++ AE +AI LE +
Sbjct: 620 GITIYTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALE---------D 669
Query: 105 FNFRSVIICSDSRSSLEALRTQFTLNEISFNILCTVHQLKARDINIKFLWIPSHCGIVEN 164
+ V I +DS + + L + ++ ++I + F W+P H GI N
Sbjct: 670 TRDKQVNIVTDSYYCWKNITEGLGLEGPQSPWWPIIQNIREKEI-VYFAWVPGHKGICGN 728
Query: 165 ERVDQAAK 172
+ D+AAK
Sbjct: 729 QLADEAAK 736
>sp|P32542|POL_EIAVC Pol polyprotein OS=Equine infectious anemia virus (isolate CL22)
GN=pol PE=1 SV=1
Length = 1146
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 12/128 (9%)
Query: 46 SLFIFTDGTKTATNTGFAYV-SGDLCQTYRLNPLSSIFTAESLAILKCLEYIMSLVIVDN 104
+ I+TDG K AYV S + RL P++ AE +AI LE +
Sbjct: 620 GITIYTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALE---------D 669
Query: 105 FNFRSVIICSDSRSSLEALRTQFTLNEISFNILCTVHQLKARDINIKFLWIPSHCGIVEN 164
+ V I +DS + + L + ++ ++I + F W+P H GI N
Sbjct: 670 TRDKQVNIVTDSYYCWKNITEGLGLEGPQSPWWPIIQNIREKEI-VYFAWVPGHKGICGN 728
Query: 165 ERVDQAAK 172
+ D+AAK
Sbjct: 729 QLADEAAK 736
>sp|P03371|POL_EIAVY Pol polyprotein OS=Equine infectious anemia virus (strain Wyoming)
GN=pol PE=3 SV=1
Length = 1145
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 12/128 (9%)
Query: 46 SLFIFTDGTKTATNTGFAYV-SGDLCQTYRLNPLSSIFTAESLAILKCLEYIMSLVIVDN 104
+ I+TDG K AYV S + RL P++ AE +AI LE +
Sbjct: 619 GITIYTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALE---------D 668
Query: 105 FNFRSVIICSDSRSSLEALRTQFTLNEISFNILCTVHQLKARDINIKFLWIPSHCGIVEN 164
+ V I +DS + + L + ++ ++I + F W+P H GI N
Sbjct: 669 TRDKQVNIVTDSYYCWKNITEGLGLEGPQNPWWPIIQNIREKEI-VYFAWVPGHKGIYGN 727
Query: 165 ERVDQAAK 172
+ D+AAK
Sbjct: 728 QLADEAAK 735
>sp|O83817|Y845_TREPA UPF0178 protein TP_0845 OS=Treponema pallidum (strain Nichols)
GN=TP_0845 PE=3 SV=2
Length = 177
Score = 36.2 bits (82), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 158 HCGIVENERVDQAAKNSI--YAQLLKSVVVKDV-----IIQSKKTILNEWKTDWLENQLY 210
HC +VE + VDQAA I YA+ VV +D+ I+ ++ +++N+ + E +
Sbjct: 44 HCIMVETQPVDQAADRHIIAYARAGDLVVTRDIVLAKAIVDARISVINDRGDVYTEENIR 103
Query: 211 ERNKLREIKKDIK 223
ER +R D++
Sbjct: 104 ERLSVRNFMYDLR 116
>sp|B3Q6U1|RNH_RHOPT Ribonuclease H OS=Rhodopseudomonas palustris (strain TIE-1) GN=rnhA
PE=3 SV=1
Length = 155
Score = 36.2 bits (82), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 149 NIKFLWIPSHCGIVENERVDQAAKNSIYAQLLKSVV 184
+I++ W+ H G ENER DQ A++ + +KS V
Sbjct: 119 SIRWHWVKGHAGHAENERADQLARDGLTENRMKSRV 154
>sp|Q6N1Y3|RNH_RHOPA Ribonuclease H OS=Rhodopseudomonas palustris (strain ATCC BAA-98 /
CGA009) GN=rnhA PE=3 SV=1
Length = 155
Score = 36.2 bits (82), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 149 NIKFLWIPSHCGIVENERVDQAAKNSIYAQLLKSVV 184
+I++ W+ H G ENER DQ A++ + +KS V
Sbjct: 119 SIRWHWVKGHAGHAENERADQLARDGLTENRMKSRV 154
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 35.4 bits (80), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 64 YVSGDLCQTYRLNPLSSIFTAESLAILKCLEY------IMSLVIVDNFNFRSVIICSDSR 117
YV G + +L + I+K E +M++++ + +V I +DS+
Sbjct: 1027 YVDGAANRETKLGKAGYVTEQGKQKIIKLDETTNQKAELMAILLALQDSKETVNIVTDSQ 1086
Query: 118 SSLEALRTQFTLNEISFNILCTVHQLKARDINIKFLWIPSHCGIVENERVDQAAKNSI 175
+L + +Q T +E S + + +L ++ + W+P+H GI NE++D+ I
Sbjct: 1087 YALGVISSQPTQSE-SPIVQQIIEELTKKE-QVYLTWVPAHKGIGGNEKIDKLVSKDI 1142
>sp|Q131J2|RNH_RHOPS Ribonuclease H OS=Rhodopseudomonas palustris (strain BisB5) GN=rnhA
PE=3 SV=1
Length = 150
Score = 35.0 bits (79), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 150 IKFLWIPSHCGIVENERVDQAAKNSIYAQLLKSVV 184
+++ W+ H G ENER DQ A++ + LKS +
Sbjct: 115 VRWHWVKGHAGHDENERADQLARDGLTKHRLKSRI 149
>sp|Q6MBV4|MUTS_PARUW DNA mismatch repair protein MutS OS=Protochlamydia amoebophila
(strain UWE25) GN=mutS PE=3 SV=1
Length = 858
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 22/124 (17%)
Query: 126 QFTLNEISFNILCTVHQLKARDINIKFLWIPSHCGIVENERVDQAAKNSIYAQLLKSVVV 185
F+ I+F +K+ +NI WI H +++D +K + ++
Sbjct: 390 HFSFKPIAF--------IKSLLLNIPSEWINEHA-----QKLDPLSK--------MNALI 428
Query: 186 KDVIIQSKKTILNEWKTDWLENQLYERNKLREIKKDIKTWKTVHWRNRRDEIAVCRLRIG 245
+ I++ L E KT + + E ++LREI D K W + R+E + L++G
Sbjct: 429 SNAIVEEPPLRLGEGKT-FRQGFHRELDELREISHDSKAWMARYQTQIREETGIKTLKVG 487
Query: 246 HTKL 249
K+
Sbjct: 488 FNKM 491
>sp|Q5NYP6|RNH_AROAE Ribonuclease H OS=Aromatoleum aromaticum (strain EbN1) GN=rnhA PE=3
SV=1
Length = 153
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 22/156 (14%)
Query: 45 DSLFIFTDG--TKTATNTGFAYV---SGDLCQTYRLNPLSSIFTAESLAILKCLEYIMSL 99
D + IFTDG + G+ + + + P ++ E LA+++ LE +
Sbjct: 3 DQIEIFTDGACSGNPGPGGWGAILRSGAHEKEIWGGEPHTTNNRMELLAVIRALELLKRP 62
Query: 100 VIVD--------NFNFRSVIICSDSRSSLEALRTQFTLNEI--SFNILCTVHQLKARDIN 149
V+ I +R A + ++ + + + HQ
Sbjct: 63 VVARVHTDSQYVQKGISEWIHGWKARGWKTAAKAPVKNEDLWRALDEAASRHQ------- 115
Query: 150 IKFLWIPSHCGIVENERVDQAAKNSIYAQLLKSVVV 185
++++W+ H G VENER D+ A+ + A + V
Sbjct: 116 VQWVWVRGHAGHVENERADELARRGVDAVRRQGAAV 151
>sp|A4J7B3|RNH_DESRM Ribonuclease H OS=Desulfotomaculum reducens (strain MI-1) GN=rnhA
PE=3 SV=1
Length = 159
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Query: 137 LCTVHQLKARDINIKFLWIPSHCGIVENERVDQAA 171
LC H N+KF W+ H G ENER DQ A
Sbjct: 118 LCEFH-------NVKFNWVKGHAGHPENERCDQLA 145
>sp|Q09XV5|CHD8_MOUSE Chromodomain-helicase-DNA-binding protein 8 OS=Mus musculus GN=Chd8
PE=1 SV=1
Length = 2582
Score = 33.5 bits (75), Expect = 1.9, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 198 NEWKTDWLENQLYERNKLREIKKDIKTWKTVHWRNRRDEIAVCRLRIGHT 247
N WK L ++ RN+LRE + + W +W NR++ I + +G T
Sbjct: 796 NAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKT 845
>sp|Q2J0F8|RNH_RHOP2 Ribonuclease H OS=Rhodopseudomonas palustris (strain HaA2) GN=rnhA
PE=3 SV=1
Length = 161
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 150 IKFLWIPSHCGIVENERVDQAAKNSIYAQLLKSVV 184
+++ W+ H G ENER DQ A++ + +KS +
Sbjct: 126 VRWHWVKGHAGHDENERADQLARDGLTENRMKSRI 160
>sp|P16901|POL_OMVVS Pol polyprotein OS=Ovine maedi visna related virus (strain South
Africa) GN=pol PE=3 SV=1
Length = 1086
Score = 33.5 bits (75), Expect = 2.2, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 112 ICSDSRSSLEALRTQFTLNEISFNILCTVHQLKARDINIKFLWIPSHCGIVENERVDQ 169
I +DSR + E +R + I I + +L I W+P H GI +NE +D+
Sbjct: 609 IVTDSRYAYEFMRRNWDEEVIKNPIQARIMKLVHDKEQIGVHWVPGHKGIPQNEEIDK 666
>sp|A5EAL2|RNH_BRASB Ribonuclease H OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
GN=rnhA PE=3 SV=1
Length = 154
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 143 LKARDINIKFLWIPSHCGIVENERVDQAAKNSI-YAQLLKSV 183
LK +N + W+ H G ENER DQ A++ + A+L K+V
Sbjct: 113 LKPHKVN--WHWVKGHAGHAENERADQLARDGVAMARLQKNV 152
>sp|B2VHJ5|RNH_ERWT9 Ribonuclease H OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99)
GN=rnhA PE=3 SV=1
Length = 155
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 149 NIKFLWIPSHCGIVENERVDQAAKNSIYAQLLKSV 183
+I + W+ H G VENER D+ A+N+ L V
Sbjct: 115 DITWKWVKGHAGHVENERCDELARNAAGNPTLDDV 149
>sp|Q115G0|RNH_TRIEI Ribonuclease H OS=Trichodesmium erythraeum (strain IMS101) GN=rnhA
PE=3 SV=1
Length = 157
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 7/35 (20%)
Query: 137 LCTVHQLKARDINIKFLWIPSHCGIVENERVDQAA 171
LC+ HQ ++F W+ H G +ENER D+ A
Sbjct: 114 LCSKHQ-------VEFSWVRGHSGNIENERCDKLA 141
>sp|Q08885|RNH_BUCAP Ribonuclease H OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=rnhA PE=3 SV=1
Length = 161
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 146 RDINIKFLWIPSHCGIVENERVDQAAKNSIYAQLLKSVVVKDVIIQSK 193
++ +I + W+ +H G +ENER D+ A+ S + +K ++ Q+K
Sbjct: 112 KNHHITWFWVKAHMGHLENERCDKIARQSAQSPSVKDFFYENNFYQNK 159
>sp|P33459|POL_CAEVC Pol polyprotein OS=Caprine arthritis encephalitis virus (strain
Cork) GN=pol PE=3 SV=1
Length = 1109
Score = 32.0 bits (71), Expect = 6.7, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 112 ICSDSRSSLEALRTQFTLNEISFNILCTVHQLKARDINIKFLWIPSHCGIVENERVDQ 169
+ +DSR + E L + I I + ++ + I W+P H GI +NE +D+
Sbjct: 633 LVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQNEEIDK 690
>sp|Q9HCK8|CHD8_HUMAN Chromodomain-helicase-DNA-binding protein 8 OS=Homo sapiens GN=CHD8
PE=1 SV=5
Length = 2581
Score = 31.6 bits (70), Expect = 7.6, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 200 WKTDWLENQLYERNKLREIKKDIKTWKTVHWRNRRDEIAVCRLRIGHT 247
WK L ++ RN+LRE + + W +W NR++ I + +G T
Sbjct: 796 WKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKT 843
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,100,117
Number of Sequences: 539616
Number of extensions: 4111870
Number of successful extensions: 10413
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 10394
Number of HSP's gapped (non-prelim): 29
length of query: 315
length of database: 191,569,459
effective HSP length: 117
effective length of query: 198
effective length of database: 128,434,387
effective search space: 25430008626
effective search space used: 25430008626
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)