Query psy10247
Match_columns 315
No_of_seqs 186 out of 1554
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 21:37:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10247.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10247hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06548 ribonuclease H; Provi 99.9 4.8E-23 1E-27 171.4 14.2 126 44-178 3-143 (161)
2 COG0328 RnhA Ribonuclease HI [ 99.9 6.1E-23 1.3E-27 167.9 13.7 127 45-178 2-146 (154)
3 PF00075 RNase_H: RNase H; In 99.9 2.1E-23 4.6E-28 168.9 10.7 118 45-176 2-132 (132)
4 PRK08719 ribonuclease H; Revie 99.9 9.1E-23 2E-27 168.1 13.5 121 45-176 3-146 (147)
5 PRK00203 rnhA ribonuclease H; 99.9 7.9E-22 1.7E-26 163.7 13.4 125 46-179 3-144 (150)
6 cd06222 RnaseH RNase H (RNase 99.8 2.7E-18 5.9E-23 135.9 14.3 122 48-175 1-130 (130)
7 PRK13907 rnhA ribonuclease H; 99.8 1.6E-17 3.5E-22 134.1 13.7 121 47-177 2-127 (128)
8 KOG3752|consensus 99.7 1.4E-17 3E-22 151.9 10.8 128 44-177 210-365 (371)
9 PRK07708 hypothetical protein; 99.7 1.5E-15 3.2E-20 133.0 15.5 141 31-180 59-211 (219)
10 PRK07238 bifunctional RNase H/ 99.5 9.9E-14 2.2E-18 131.7 14.6 122 46-178 2-133 (372)
11 PF13456 RVT_3: Reverse transc 99.3 5.4E-12 1.2E-16 94.1 9.0 86 81-176 1-86 (87)
12 PF13966 zf-RVT: zinc-binding 96.5 0.0016 3.6E-08 48.4 2.0 31 253-283 52-83 (86)
13 PF05380 Peptidase_A17: Pao re 92.9 0.59 1.3E-05 38.8 8.0 68 45-114 80-159 (159)
14 PF00336 DNA_pol_viral_C: DNA 83.1 1.5 3.3E-05 37.7 3.7 81 25-120 66-153 (245)
15 COG3341 Predicted double-stran 70.9 17 0.00037 31.7 6.6 144 24-177 38-201 (225)
16 PF05741 zf-nanos: Nanos RNA b 69.2 2.4 5.3E-05 28.6 0.9 21 261-281 34-54 (55)
17 KOG1994|consensus 54.4 3.7 8.1E-05 35.8 -0.3 33 236-282 229-262 (268)
18 COG0296 GlgB 1,4-alpha-glucan 52.8 17 0.00038 37.0 4.1 35 133-167 213-247 (628)
19 KOG1812|consensus 41.5 72 0.0016 30.6 6.2 44 78-127 46-89 (384)
20 PF11919 DUF3437: Domain of un 36.4 7.1 0.00015 29.2 -1.2 44 2-47 20-64 (90)
21 PF13696 zf-CCHC_2: Zinc knuck 32.9 22 0.00048 21.2 0.8 20 259-281 7-26 (32)
22 PF03119 DNA_ligase_ZBD: NAD-d 31.3 17 0.00037 20.8 0.1 20 262-281 1-22 (28)
23 PF00098 zf-CCHC: Zinc knuckle 30.6 41 0.00089 17.0 1.5 17 262-281 2-18 (18)
24 KOG4602|consensus 30.3 24 0.00052 31.5 0.9 23 260-282 268-290 (318)
25 COG2093 DNA-directed RNA polym 24.8 48 0.0011 22.9 1.4 15 256-270 14-28 (64)
26 PF08274 PhnA_Zn_Ribbon: PhnA 24.6 26 0.00057 20.5 0.1 20 261-280 3-23 (30)
27 PF13917 zf-CCHC_3: Zinc knuck 24.3 48 0.001 21.0 1.3 19 260-281 4-22 (42)
28 PRK08298 cytidine deaminase; V 23.5 1.8E+02 0.0038 23.5 4.8 56 50-116 19-78 (136)
29 cd01285 nucleoside_deaminase N 23.5 3.3E+02 0.0071 20.6 6.2 53 59-117 18-75 (109)
30 PRK03824 hypA hydrogenase nick 23.3 38 0.00083 27.3 0.9 8 261-268 108-115 (135)
31 PF13248 zf-ribbon_3: zinc-rib 23.3 44 0.00096 18.5 0.9 7 262-268 4-10 (26)
32 PRK12380 hydrogenase nickel in 23.2 37 0.0008 26.4 0.7 7 262-268 72-78 (113)
33 TIGR00100 hypA hydrogenase nic 23.2 38 0.00082 26.5 0.8 21 261-281 71-91 (115)
34 PF05605 zf-Di19: Drought indu 21.9 37 0.0008 22.4 0.4 21 260-280 2-22 (54)
35 PF14169 YdjO: Cold-inducible 21.5 63 0.0014 22.1 1.5 21 255-275 34-56 (59)
36 TIGR03847 conserved hypothetic 20.7 58 0.0013 27.5 1.4 23 257-282 153-176 (177)
37 PRK10860 tRNA-specific adenosi 20.4 3E+02 0.0064 23.1 5.7 38 59-96 34-75 (172)
38 COG1326 Uncharacterized archae 20.3 42 0.00091 28.8 0.6 22 261-282 7-36 (201)
39 PRK03681 hypA hydrogenase nick 20.1 48 0.001 25.9 0.8 8 261-268 71-78 (114)
No 1
>PRK06548 ribonuclease H; Provisional
Probab=99.90 E-value=4.8e-23 Score=171.36 Aligned_cols=126 Identities=21% Similarity=0.288 Sum_probs=94.5
Q ss_pred CCceEEEEcCCCCC--CCeeEEEE-ECCeeeEEecCCCCcHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEeCCHHHH
Q psy10247 44 LDSLFIFTDGTKTA--TNTGFAYV-SGDLCQTYRLNPLSSIFTAESLAILKCLEYIMSLVIVDNFNFRSVIICSDSRSSL 120 (315)
Q Consensus 44 ~~~~~iytDGS~~~--~~~G~a~v-~~~~~~~~~l~~~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~sDS~~al 120 (315)
+..+.||||||+.. +..|+|++ ....... .....+|++.|||.||+.||+.+. .....|.|+|||++|+
T Consensus 3 ~~~~~IytDGa~~gnpg~~G~g~~~~~~~~~~-g~~~~~TNnraEl~Aii~aL~~~~-------~~~~~v~I~TDS~yvi 74 (161)
T PRK06548 3 NNEIIAATDGSSLANPGPSGWAWYVDENTWDS-GGWDIATNNIAELTAVRELLIATR-------HTDRPILILSDSKYVI 74 (161)
T ss_pred CCEEEEEEeeccCCCCCceEEEEEEeCCcEEc-cCCCCCCHHHHHHHHHHHHHHhhh-------cCCceEEEEeChHHHH
Confidence 45699999999885 35888888 3322111 223468999999999999998652 1345799999999999
Q ss_pred HHHhc--------cccc---cHHH-HHHHHHHHHHhhcCCcEEEEEeCCCCCCchhhhhcHHHHHhHhhc
Q psy10247 121 EALRT--------QFTL---NEIS-FNILCTVHQLKARDINIKFLWIPSHCGIVENERVDQAAKNSIYAQ 178 (315)
Q Consensus 121 ~~l~~--------~~~~---~~~~-~~i~~~~~~l~~~~~~v~~~WVpgH~g~~gNe~AD~lAk~a~~~~ 178 (315)
++++. .+.+ .++. +++++++..+.+. ..|+|.|||||+|.+|||.||+||++|+...
T Consensus 75 ~~i~~W~~~Wk~~gWk~s~G~pV~N~dL~~~l~~l~~~-~~v~~~wVkgHsg~~gNe~aD~LA~~aa~~~ 143 (161)
T PRK06548 75 NSLTKWVYSWKMRKWRKADGKPVLNQEIIQEIDSLMEN-RNIRMSWVNAHTGHPLNEAADSLARQAANNF 143 (161)
T ss_pred HHHHHHHHHHHHCCCcccCCCccccHHHHHHHHHHHhc-CceEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 99985 2222 2333 5666666666554 4799999999999999999999999998654
No 2
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]
Probab=99.90 E-value=6.1e-23 Score=167.92 Aligned_cols=127 Identities=24% Similarity=0.292 Sum_probs=100.3
Q ss_pred CceEEEEcCCCCC--CCeeEEEE--ECCee--eEEecCCCCcHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEeCCHH
Q psy10247 45 DSLFIFTDGTKTA--TNTGFAYV--SGDLC--QTYRLNPLSSIFTAESLAILKCLEYIMSLVIVDNFNFRSVIICSDSRS 118 (315)
Q Consensus 45 ~~~~iytDGS~~~--~~~G~a~v--~~~~~--~~~~l~~~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~sDS~~ 118 (315)
..+.||||||+.. |..|+|+| .+... .+.... .+||++||++|++.||+.+. ..+...|.|+|||++
T Consensus 2 ~~v~if~DGa~~gNpG~gG~g~vl~~~~~~~~~s~~~~-~tTNNraEl~A~i~AL~~l~------~~~~~~v~l~tDS~y 74 (154)
T COG0328 2 KKVEIFTDGACLGNPGPGGWGAVLRYGDGEKELSGGEG-RTTNNRAELRALIEALEALK------ELGACEVTLYTDSKY 74 (154)
T ss_pred CceEEEecCccCCCCCCceEEEEEEcCCceEEEeeeee-cccChHHHHHHHHHHHHHHH------hcCCceEEEEecHHH
Confidence 4689999999985 45888887 33322 333344 89999999999999999994 357899999999999
Q ss_pred HHHHHhcccc---c--------cH-HHHHHHHHHHHHhhcCCcEEEEEeCCCCCCchhhhhcHHHHHhHhhc
Q psy10247 119 SLEALRTQFT---L--------NE-ISFNILCTVHQLKARDINIKFLWIPSHCGIVENERVDQAAKNSIYAQ 178 (315)
Q Consensus 119 al~~l~~~~~---~--------~~-~~~~i~~~~~~l~~~~~~v~~~WVpgH~g~~gNe~AD~lAk~a~~~~ 178 (315)
|+++|..... . .| -..+++.++..+......|.+.|||||+|.++||+||+||+.|+...
T Consensus 75 v~~~i~~w~~~w~~~~w~~~~~~pvkn~dl~~~~~~~~~~~~~v~~~WVkgH~g~~~NeraD~LA~~~~~~~ 146 (154)
T COG0328 75 VVEGITRWIVKWKKNGWKTADKKPVKNKDLWEELDELLKRHELVFWEWVKGHAGHPENERADQLAREAARAA 146 (154)
T ss_pred HHHHHHHHHhhccccCccccccCccccHHHHHHHHHHHhhCCeEEEEEeeCCCCChHHHHHHHHHHHHHHhh
Confidence 9999983311 1 12 13467777777777777999999999999999999999999998765
No 3
>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site. This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....
Probab=99.90 E-value=2.1e-23 Score=168.86 Aligned_cols=118 Identities=34% Similarity=0.517 Sum_probs=89.8
Q ss_pred CceEEEEcCCCCC--CCeeEEEE-ECCeeeEEecCCCCcHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEeCCHHHHH
Q psy10247 45 DSLFIFTDGTKTA--TNTGFAYV-SGDLCQTYRLNPLSSIFTAESLAILKCLEYIMSLVIVDNFNFRSVIICSDSRSSLE 121 (315)
Q Consensus 45 ~~~~iytDGS~~~--~~~G~a~v-~~~~~~~~~l~~~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~sDS~~al~ 121 (315)
..+.||||||+.. +..|+|++ ..+...+..++ ..|++.|||.||..||+.+ . ...++|+|||+++++
T Consensus 2 ~~~~iytDgS~~~~~~~~~~g~v~~~~~~~~~~~~-~~s~~~aEl~Ai~~AL~~~-~--------~~~v~I~tDS~~v~~ 71 (132)
T PF00075_consen 2 KAIIIYTDGSCRPNPGKGGAGYVVWGGRNFSFRLG-GQSNNRAELQAIIEALKAL-E--------HRKVTIYTDSQYVLN 71 (132)
T ss_dssp TSEEEEEEEEECTTTTEEEEEEEEETTEEEEEEEE-SECHHHHHHHHHHHHHHTH-S--------TSEEEEEES-HHHHH
T ss_pred CcEEEEEeCCccCCCCceEEEEEEECCeEEEeccc-ccchhhhheehHHHHHHHh-h--------cccccccccHHHHHH
Confidence 4789999999774 33566665 44444445555 8899999999999999943 2 389999999999999
Q ss_pred HHhc-----ccccc----HHHHHHHHHHHHHhhcCCcEEEEEeCCCCCC-chhhhhcHHHHHhHh
Q psy10247 122 ALRT-----QFTLN----EISFNILCTVHQLKARDINIKFLWIPSHCGI-VENERVDQAAKNSIY 176 (315)
Q Consensus 122 ~l~~-----~~~~~----~~~~~i~~~~~~l~~~~~~v~~~WVpgH~g~-~gNe~AD~lAk~a~~ 176 (315)
.+.. .+... ++..+|... + ..+.+|.|.|||||+|+ .||+.||+|||+|+.
T Consensus 72 ~l~~~~~~~~~~~~~~~~~i~~~i~~~---~-~~~~~v~~~~V~~H~~~~~~N~~aD~lAk~a~~ 132 (132)
T PF00075_consen 72 ALNKWLHGNGWKKTSNGRPIKNEIWEL---L-SRGIKVRFRWVPGHSGVPQGNERADRLAKEAAQ 132 (132)
T ss_dssp HHHTHHHHTTSBSCTSSSBHTHHHHHH---H-HHSSEEEEEESSSSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccccccccccccchhheeec---c-ccceEEeeeeccCcCCCchhHHHHHHHHHHhcC
Confidence 8887 33222 344455532 2 55899999999999999 799999999999873
No 4
>PRK08719 ribonuclease H; Reviewed
Probab=99.89 E-value=9.1e-23 Score=168.12 Aligned_cols=121 Identities=23% Similarity=0.349 Sum_probs=91.7
Q ss_pred CceEEEEcCCCCCC-----CeeEEEE--EC--Cee--eEEecCCCCcHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEE
Q psy10247 45 DSLFIFTDGTKTAT-----NTGFAYV--SG--DLC--QTYRLNPLSSIFTAESLAILKCLEYIMSLVIVDNFNFRSVIIC 113 (315)
Q Consensus 45 ~~~~iytDGS~~~~-----~~G~a~v--~~--~~~--~~~~l~~~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~ 113 (315)
+.++||||||+..+ .+|+|++ +. ... ....+...+|++.||+.|++.||+.+.. . .+|+
T Consensus 3 ~~~~iYtDGs~~~n~~~~~~~G~G~vv~~~~~~~~~~~~~~~~~~~Tnn~aEl~A~~~aL~~~~~-------~---~~i~ 72 (147)
T PRK08719 3 ASYSIYIDGAAPNNQHGCVRGGIGLVVYDEAGEIVDEQSITVNRYTDNAELELLALIEALEYARD-------G---DVIY 72 (147)
T ss_pred ceEEEEEecccCCCCCCCCCcEEEEEEEeCCCCeeEEEEecCCCCccHHHHHHHHHHHHHHHcCC-------C---CEEE
Confidence 57899999999643 2588876 32 222 3334555689999999999999999832 1 3799
Q ss_pred eCCHHHHHHH--------hcccccc---HH-HHHHHHHHHHHhhcCCcEEEEEeCCCCCCchhhhhcHHHHHhHh
Q psy10247 114 SDSRSSLEAL--------RTQFTLN---EI-SFNILCTVHQLKARDINIKFLWIPSHCGIVENERVDQAAKNSIY 176 (315)
Q Consensus 114 sDS~~al~~l--------~~~~~~~---~~-~~~i~~~~~~l~~~~~~v~~~WVpgH~g~~gNe~AD~lAk~a~~ 176 (315)
|||++|++++ .+++..+ ++ -..++..+..+.+ ..+|+|.|||||+|++|||.||+||++|+.
T Consensus 73 tDS~yvi~~i~~~~~~W~~~~w~~s~g~~v~n~dl~~~i~~l~~-~~~i~~~~VkgH~g~~~Ne~aD~lA~~a~~ 146 (147)
T PRK08719 73 SDSDYCVRGFNEWLDTWKQKGWRKSDKKPVANRDLWQQVDELRA-RKYVEVEKVTAHSGIEGNEAADMLAQAAAE 146 (147)
T ss_pred echHHHHHHHHHHHHHHHhCCcccCCCcccccHHHHHHHHHHhC-CCcEEEEEecCCCCChhHHHHHHHHHHHhh
Confidence 9999999999 4455432 22 2456666666655 577999999999999999999999999874
No 5
>PRK00203 rnhA ribonuclease H; Reviewed
Probab=99.88 E-value=7.9e-22 Score=163.69 Aligned_cols=125 Identities=19% Similarity=0.270 Sum_probs=91.7
Q ss_pred ceEEEEcCCCCC--CCeeEEEE--ECCeeeEE-ecCCCCcHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEeCCHHHH
Q psy10247 46 SLFIFTDGTKTA--TNTGFAYV--SGDLCQTY-RLNPLSSIFTAESLAILKCLEYIMSLVIVDNFNFRSVIICSDSRSSL 120 (315)
Q Consensus 46 ~~~iytDGS~~~--~~~G~a~v--~~~~~~~~-~l~~~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~sDS~~al 120 (315)
.+.||||||+.. +..|+|+| .++....+ ......|++.|||.|++.||+.+. ....+.|+|||++++
T Consensus 3 ~v~iytDGs~~~n~~~~g~g~v~~~~~~~~~~~~~~~~~TN~~aEL~Ai~~AL~~~~--------~~~~v~I~tDS~yvi 74 (150)
T PRK00203 3 QVEIYTDGACLGNPGPGGWGAILRYKGHEKELSGGEALTTNNRMELMAAIEALEALK--------EPCEVTLYTDSQYVR 74 (150)
T ss_pred eEEEEEEecccCCCCceEEEEEEEECCeeEEEecCCCCCcHHHHHHHHHHHHHHHcC--------CCCeEEEEECHHHHH
Confidence 589999999984 34788877 33322222 223478899999999999999872 246799999999999
Q ss_pred HHHhcc--------ccc---cHHH-HHHHHHHHHHhhcCCcEEEEEeCCCCCCchhhhhcHHHHHhHhhcc
Q psy10247 121 EALRTQ--------FTL---NEIS-FNILCTVHQLKARDINIKFLWIPSHCGIVENERVDQAAKNSIYAQL 179 (315)
Q Consensus 121 ~~l~~~--------~~~---~~~~-~~i~~~~~~l~~~~~~v~~~WVpgH~g~~gNe~AD~lAk~a~~~~~ 179 (315)
++|... +.. .++. ..+++.+..+.. ...|.|.|||||+|++||+.||+||++|+..+.
T Consensus 75 ~~i~~w~~~Wk~~~~~~~~g~~v~n~dl~~~i~~l~~-~~~v~~~wV~~H~~~~~N~~AD~lA~~a~~~~~ 144 (150)
T PRK00203 75 QGITEWIHGWKKNGWKTADKKPVKNVDLWQRLDAALK-RHQIKWHWVKGHAGHPENERCDELARAGAEEAT 144 (150)
T ss_pred HHHHHHHHHHHHcCCcccCCCccccHHHHHHHHHHhc-cCceEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 999862 221 1222 234444444433 378999999999999999999999999987643
No 6
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=99.79 E-value=2.7e-18 Score=135.93 Aligned_cols=122 Identities=27% Similarity=0.351 Sum_probs=93.5
Q ss_pred EEEEcCCCCCC--CeeEEEE--ECCe--ee-EEecCCCCcHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEeCCHHHH
Q psy10247 48 FIFTDGTKTAT--NTGFAYV--SGDL--CQ-TYRLNPLSSIFTAESLAILKCLEYIMSLVIVDNFNFRSVIICSDSRSSL 120 (315)
Q Consensus 48 ~iytDGS~~~~--~~G~a~v--~~~~--~~-~~~l~~~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~sDS~~al 120 (315)
.+|||||...+ ++|+|++ +... .. ........+++.+|+.|++.||+.+. ......+.|++||+.++
T Consensus 1 ~~~~Dgs~~~~~~~~g~g~v~~~~~~~~~~~~~~~~~~~s~~~aEl~al~~al~~~~------~~~~~~i~i~~Ds~~~~ 74 (130)
T cd06222 1 VIYTDGSCRGNPGPAGAGVVLRDPGGEVLLSGGLLGGNTTNNRAELLALIEALELAL------ELGGKKVNIYTDSQYVI 74 (130)
T ss_pred CEEecccCCCCCCceEEEEEEEeCCCeEEEeccccCCCCcHHHHHHHHHHHHHHHHH------hCCCceEEEEECHHHHH
Confidence 47999999864 6888887 3221 11 11222578999999999999999984 45789999999999999
Q ss_pred HHHhcccc-ccHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCCchhhhhcHHHHHhH
Q psy10247 121 EALRTQFT-LNEISFNILCTVHQLKARDINIKFLWIPSHCGIVENERVDQAAKNSI 175 (315)
Q Consensus 121 ~~l~~~~~-~~~~~~~i~~~~~~l~~~~~~v~~~WVpgH~g~~gNe~AD~lAk~a~ 175 (315)
+.+++... .......+...+..+...+..+.|.|||+|+|..+|+.||.|||.|.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~v~~h~~~~~n~~ad~la~~~~ 130 (130)
T cd06222 75 NALTGWYEGKPVKNVDLWQRLLALLKRFHKVRFEWVPGHSGIEGNERADALAKEAA 130 (130)
T ss_pred HHhhccccCCChhhHHHHHHHHHHHhCCCeEEEEEcCCCCCCcchHHHHHHHHhhC
Confidence 99998764 22223344444445556788999999999999999999999999873
No 7
>PRK13907 rnhA ribonuclease H; Provisional
Probab=99.76 E-value=1.6e-17 Score=134.07 Aligned_cols=121 Identities=21% Similarity=0.244 Sum_probs=92.9
Q ss_pred eEEEEcCCCCC--CCeeEEEE--ECCeeeEEe-cCCCCcHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEeCCHHHHH
Q psy10247 47 LFIFTDGTKTA--TNTGFAYV--SGDLCQTYR-LNPLSSIFTAESLAILKCLEYIMSLVIVDNFNFRSVIICSDSRSSLE 121 (315)
Q Consensus 47 ~~iytDGS~~~--~~~G~a~v--~~~~~~~~~-l~~~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~sDS~~al~ 121 (315)
+.||||||+.. +..|+|+| +.......+ .....|++.||+.|++.||+.+.. .+...+.|+|||+.+++
T Consensus 2 ~~iy~DGa~~~~~g~~G~G~vi~~~~~~~~~~~~~~~~tn~~AE~~All~aL~~a~~------~g~~~v~i~sDS~~vi~ 75 (128)
T PRK13907 2 IEVYIDGASKGNPGPSGAGVFIKGVQPAVQLSLPLGTMSNHEAEYHALLAALKYCTE------HNYNIVSFRTDSQLVER 75 (128)
T ss_pred EEEEEeeCCCCCCCccEEEEEEEECCeeEEEEecccccCCcHHHHHHHHHHHHHHHh------CCCCEEEEEechHHHHH
Confidence 67999999985 45888888 332221121 234679999999999999999953 45678999999999999
Q ss_pred HHhccccccHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCCchhhhhcHHHHHhHhh
Q psy10247 122 ALRTQFTLNEISFNILCTVHQLKARDINIKFLWIPSHCGIVENERVDQAAKNSIYA 177 (315)
Q Consensus 122 ~l~~~~~~~~~~~~i~~~~~~l~~~~~~v~~~WVpgH~g~~gNe~AD~lAk~a~~~ 177 (315)
.+++.+........++..+..+......+.|.|||. +.|+.||.||++|...
T Consensus 76 ~~~~~~~~~~~~~~l~~~~~~l~~~f~~~~~~~v~r----~~N~~Ad~LA~~a~~~ 127 (128)
T PRK13907 76 AVEKEYAKNKMFAPLLEEALQYIKSFDLFFIKWIPS----SQNKVADELARKAILQ 127 (128)
T ss_pred HHhHHHhcChhHHHHHHHHHHHHhcCCceEEEEcCc----hhchhHHHHHHHHHhc
Confidence 999977544444556666666666777888999995 5999999999998753
No 8
>KOG3752|consensus
Probab=99.73 E-value=1.4e-17 Score=151.93 Aligned_cols=128 Identities=20% Similarity=0.322 Sum_probs=98.0
Q ss_pred CCceEEEEcCCCCCC-----CeeEEEE--EC-CeeeEEecC-CCCcHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEe
Q psy10247 44 LDSLFIFTDGTKTAT-----NTGFAYV--SG-DLCQTYRLN-PLSSIFTAESLAILKCLEYIMSLVIVDNFNFRSVIICS 114 (315)
Q Consensus 44 ~~~~~iytDGS~~~~-----~~G~a~v--~~-~~~~~~~l~-~~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~s 114 (315)
.+.+++|||||+..+ .+|+|++ ++ ....+..+. ..+++|.|||.||..||+.|.+ ....+++|.|
T Consensus 210 ~~~~vvytDGS~~~ng~~~~~AGyGvywg~~~e~N~s~pv~~g~qtNnrAEl~Av~~ALkka~~------~~~~kv~I~T 283 (371)
T KOG3752|consen 210 IEIQVVYTDGSSSGNGRKSSRAGYGVYWGPGHELNVSGPLAGGRQTNNRAELIAAIEALKKARS------KNINKVVIRT 283 (371)
T ss_pred ccceEEEecCccccCCCCCCcceeEEeeCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHh------cCCCcEEEEe
Confidence 455899999999863 4899998 22 345777775 7899999999999999999953 3566999999
Q ss_pred CCHHHHHHHhccccc-----------cH-----H-HHHHHHHHHHHhh--cCCcEEEEEeCCCCCCchhhhhcHHHHHhH
Q psy10247 115 DSRSSLEALRTQFTL-----------NE-----I-SFNILCTVHQLKA--RDINIKFLWIPSHCGIVENERVDQAAKNSI 175 (315)
Q Consensus 115 DS~~al~~l~~~~~~-----------~~-----~-~~~i~~~~~~l~~--~~~~v~~~WVpgH~g~~gNe~AD~lAk~a~ 175 (315)
||.+++++|+.+... ++ + .+.....+..|.+ .+.+|++.||+||.|+.|||+||.||++++
T Consensus 284 DS~~~i~~l~~wv~~~k~~~~k~~~~~~~i~~~v~n~~~~~e~~~l~q~~~~~~vq~~~V~Gh~gi~gne~Ad~lARkgs 363 (371)
T KOG3752|consen 284 DSEYFINSLTLWVQGWKKNGWKTSNGSDRICAYVKNQDFFNELDELEQEISNKKVQQEYVGGHSGILGNEMADALARKGS 363 (371)
T ss_pred chHHHHHHHHHHHhhhccCccccccCCCccceeeecchHHHHHHHHHhhhccCceEEEEecCcCCcchHHHHHHHHhhhh
Confidence 999999999764321 12 0 1123333444433 368999999999999999999999999985
Q ss_pred hh
Q psy10247 176 YA 177 (315)
Q Consensus 176 ~~ 177 (315)
..
T Consensus 364 ~~ 365 (371)
T KOG3752|consen 364 TL 365 (371)
T ss_pred hh
Confidence 43
No 9
>PRK07708 hypothetical protein; Validated
Probab=99.67 E-value=1.5e-15 Score=132.96 Aligned_cols=141 Identities=16% Similarity=0.178 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhhCCCceEEEEcCCCC--CCCeeEEEE--E--CCeee----EEecCCCCcHhHHHHHHHHHHHHHHHHhh
Q psy10247 31 QARNSFLEFKSQNLDSLFIFTDGTKT--ATNTGFAYV--S--GDLCQ----TYRLNPLSSIFTAESLAILKCLEYIMSLV 100 (315)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~iytDGS~~--~~~~G~a~v--~--~~~~~----~~~l~~~~s~~~aEl~Ai~~aL~~~~~~~ 100 (315)
+..+...++ ...|+.+.+|+|||+. ++++|+|+| . ++... ...++...|++.||+.|++.||+.+..
T Consensus 59 ~~~~~~~~~-~~ep~~~~vY~DGs~~~n~g~aG~GvVI~~~~g~~~~~~~~~~~l~~~~TNN~AEy~Ali~aL~~A~e-- 135 (219)
T PRK07708 59 ELKKLSKEV-EEEPHEILVYFDGGFDKETKLAGLGIVIYYKQGNKRYRIRRNAYIEGIYDNNEAEYAALYYAMQELEE-- 135 (219)
T ss_pred HHhhhhhhh-ccCCCcEEEEEeeccCCCCCCcEEEEEEEECCCCEEEEEEeeccccccccCcHHHHHHHHHHHHHHHH--
Confidence 344443333 3357789999999986 356788876 3 22221 123555689999999999999999964
Q ss_pred hhccCCcceEEEEeCCHHHHHHHhccccc-cHHHHHHHHHHHHH-hhcCCcEEEEEeCCCCCCchhhhhcHHHHHhHhhc
Q psy10247 101 IVDNFNFRSVIICSDSRSSLEALRTQFTL-NEISFNILCTVHQL-KARDINIKFLWIPSHCGIVENERVDQAAKNSIYAQ 178 (315)
Q Consensus 101 ~~~~~~~~~i~I~sDS~~al~~l~~~~~~-~~~~~~i~~~~~~l-~~~~~~v~~~WVpgH~g~~gNe~AD~lAk~a~~~~ 178 (315)
.......|.|++||+.+++.+++.+.. .+....+...+..+ ......+.|.||| +..|+.||+||++|....
T Consensus 136 --~g~~~~~V~I~~DSqlVi~qi~g~wk~~~~~l~~y~~~i~~l~~~~~l~~~~~~Vp----R~~N~~AD~LAk~Al~~~ 209 (219)
T PRK07708 136 --LGVKHEPVTFRGDSQVVLNQLAGEWPCYDEHLNHWLDRIEQKLKQLKLTPVYEPIS----RKQNKEADQLATQALEGT 209 (219)
T ss_pred --cCCCcceEEEEeccHHHHHHhCCCceeCChhHHHHHHHHHHHHhhCCceEEEEECC----chhhhHHHHHHHHHHhcC
Confidence 222234599999999999999998754 34444444444433 3334568889998 678999999999999865
Q ss_pred cc
Q psy10247 179 LL 180 (315)
Q Consensus 179 ~~ 180 (315)
.+
T Consensus 210 ~~ 211 (219)
T PRK07708 210 VI 211 (219)
T ss_pred CC
Confidence 44
No 10
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=99.54 E-value=9.9e-14 Score=131.69 Aligned_cols=122 Identities=16% Similarity=0.252 Sum_probs=93.6
Q ss_pred ceEEEEcCCCCCC--CeeEEEE--EC--C-eee--EEecCCCCcHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEeCC
Q psy10247 46 SLFIFTDGTKTAT--NTGFAYV--SG--D-LCQ--TYRLNPLSSIFTAESLAILKCLEYIMSLVIVDNFNFRSVIICSDS 116 (315)
Q Consensus 46 ~~~iytDGS~~~~--~~G~a~v--~~--~-~~~--~~~l~~~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~sDS 116 (315)
.+.||||||+..+ .+|+|++ +. . ... ...++ ..|++.||+.|++.||+.+.. .+.+.|.|++||
T Consensus 2 ~~~i~~DGa~~~n~g~aG~G~vi~~~~~~~~~~~~~~~~~-~~tnn~AE~~All~gL~~a~~------~g~~~v~i~~DS 74 (372)
T PRK07238 2 KVVVEADGGSRGNPGPAGYGAVVWDADRGEVLAERAEAIG-RATNNVAEYRGLIAGLEAAAE------LGATEVEVRMDS 74 (372)
T ss_pred eEEEEecCCCCCCCCceEEEEEEEeCCCCcEEEEeecccC-CCCchHHHHHHHHHHHHHHHh------CCCCeEEEEeCc
Confidence 4789999998854 5788877 32 2 212 22233 778899999999999999953 467799999999
Q ss_pred HHHHHHHhcccc-ccHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCCchhhhhcHHHHHhHhhc
Q psy10247 117 RSSLEALRTQFT-LNEISFNILCTVHQLKARDINIKFLWIPSHCGIVENERVDQAAKNSIYAQ 178 (315)
Q Consensus 117 ~~al~~l~~~~~-~~~~~~~i~~~~~~l~~~~~~v~~~WVpgH~g~~gNe~AD~lAk~a~~~~ 178 (315)
+.+++.+++.+. .++-...+...+..+.+....+.+.|||. .+|+.||.||+.|....
T Consensus 75 ~lvi~~i~~~~~~~~~~l~~~~~~i~~l~~~f~~~~i~~v~r----~~N~~AD~LA~~a~~~~ 133 (372)
T PRK07238 75 KLVVEQMSGRWKVKHPDMKPLAAQARELASQFGRVTYTWIPR----ARNAHADRLANEAMDAA 133 (372)
T ss_pred HHHHHHhCCCCccCChHHHHHHHHHHHHHhcCCceEEEECCc----hhhhHHHHHHHHHHHhh
Confidence 999999998775 33333445555666777778999999994 79999999999997643
No 11
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=99.35 E-value=5.4e-12 Score=94.11 Aligned_cols=86 Identities=24% Similarity=0.291 Sum_probs=66.9
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEeCCHHHHHHHhccccccHHHHHHHHHHHHHhhcCCcEEEEEeCCCCC
Q psy10247 81 IFTAESLAILKCLEYIMSLVIVDNFNFRSVIICSDSRSSLEALRTQFTLNEISFNILCTVHQLKARDINIKFLWIPSHCG 160 (315)
Q Consensus 81 ~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~sDS~~al~~l~~~~~~~~~~~~i~~~~~~l~~~~~~v~~~WVpgH~g 160 (315)
+..||+.|+..||+.+ ...+.++|.|.|||+.+++.|++..........+...+..+.+...++.|.|||
T Consensus 1 ~~~aE~~al~~al~~a------~~~g~~~i~v~sDs~~vv~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~---- 70 (87)
T PF13456_consen 1 PLEAEALALLEALQLA------WELGIRKIIVESDSQLVVDAINGRSSSRSELRPLIQDIRSLLDRFWNVSVSHIP---- 70 (87)
T ss_dssp HHHHHHHHHHHHHHHH------HCCT-SCEEEEES-HHHHHHHTTSS---SCCHHHHHHHHHHHCCCSCEEEEE------
T ss_pred CcHHHHHHHHHHHHHH------HHCCCCEEEEEecCccccccccccccccccccccchhhhhhhccccceEEEEEC----
Confidence 4689999999999999 456889999999999999999998543223345555666677778999999999
Q ss_pred CchhhhhcHHHHHhHh
Q psy10247 161 IVENERVDQAAKNSIY 176 (315)
Q Consensus 161 ~~gNe~AD~lAk~a~~ 176 (315)
.++|..||.|||.|.+
T Consensus 71 r~~N~~A~~LA~~a~~ 86 (87)
T PF13456_consen 71 REQNKVADALAKFALS 86 (87)
T ss_dssp GGGSHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHhh
Confidence 8999999999999864
No 12
>PF13966 zf-RVT: zinc-binding in reverse transcriptase
Probab=96.48 E-value=0.0016 Score=48.42 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=25.3
Q ss_pred hhcCCCCCCCCCCCCc-cccccchhccccccH
Q psy10247 253 YLFKKDAPPECRTCGV-VLTIKHILTQCKAYA 283 (315)
Q Consensus 253 ~~~~~~~~p~C~~Cg~-~et~~H~l~~Cp~~~ 283 (315)
.+.+...++.|+.|+. .||++|+|++||...
T Consensus 52 ~~r~~~~~~~C~~C~~~~Et~~Hlf~~C~~a~ 83 (86)
T PF13966_consen 52 QRRGIQVDPICPLCGNEEETIEHLFFHCPFAR 83 (86)
T ss_pred hccCCccCCccccCCCccccccceeccCcCcc
Confidence 3345577799999985 899999999999753
No 13
>PF05380 Peptidase_A17: Pao retrotransposon peptidase ; InterPro: IPR008042 This signature identifies members of the Pao retrotransposon family.
Probab=92.95 E-value=0.59 Score=38.84 Aligned_cols=68 Identities=19% Similarity=0.215 Sum_probs=40.3
Q ss_pred CceEEEEcCCCCCCCeeEEEE--E---CCee-----eEEecC--CCCcHhHHHHHHHHHHHHHHHHhhhhccCCcceEEE
Q psy10247 45 DSLFIFTDGTKTATNTGFAYV--S---GDLC-----QTYRLN--PLSSIFTAESLAILKCLEYIMSLVIVDNFNFRSVII 112 (315)
Q Consensus 45 ~~~~iytDGS~~~~~~G~a~v--~---~~~~-----~~~~l~--~~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I 112 (315)
..+++|+|+|.. +.|+.++ . +... ...++. ...|+=+-||.|+..|.+.+.....-.......+++
T Consensus 80 ~~L~~F~DAS~~--aygavvYlr~~~~~~~~~~ll~aKsrv~P~k~~tIPRlEL~a~~l~~~l~~~~~~~l~~~~~~~~~ 157 (159)
T PF05380_consen 80 VELHVFCDASES--AYGAVVYLRSYSDGSVQVRLLFAKSRVAPLKTVTIPRLELLAALLGVRLANTVKKELDIEISQVVF 157 (159)
T ss_pred eeeeEeeccccc--ceeeEeEeeeccCCceeeeeeeecccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCCcceeEE
Confidence 468999999954 3444444 2 2211 111222 244899999999999998875432223345556655
Q ss_pred Ee
Q psy10247 113 CS 114 (315)
Q Consensus 113 ~s 114 (315)
+|
T Consensus 158 wt 159 (159)
T PF05380_consen 158 WT 159 (159)
T ss_pred eC
Confidence 43
No 14
>PF00336 DNA_pol_viral_C: DNA polymerase (viral) C-terminal domain; InterPro: IPR001462 This domain is at the C terminus of hepatitis B-type viruses P proteins and represents a functional domain that controls the RNase H activities of the protein. The domain is always associated with IPR000201 from INTERPRO and .; GO: 0004523 ribonuclease H activity
Probab=83.09 E-value=1.5 Score=37.68 Aligned_cols=81 Identities=17% Similarity=0.041 Sum_probs=47.7
Q ss_pred cCCChHHHHHHHHHHHh-------hCCCceEEEEcCCCCCCCeeEEEEECCeeeEEecCCCCcHhHHHHHHHHHHHHHHH
Q psy10247 25 KSLIPQQARNSFLEFKS-------QNLDSLFIFTDGTKTATNTGFAYVSGDLCQTYRLNPLSSIFTAESLAILKCLEYIM 97 (315)
Q Consensus 25 ~~~~~~~~~~~~~~~~~-------~~~~~~~iytDGS~~~~~~G~a~v~~~~~~~~~l~~~~s~~~aEl~Ai~~aL~~~~ 97 (315)
.+.-+..++..+-...- +.+.--.||+|+.- +|+|+..+.....+.....-.+..+||+|.-.|.-+.
T Consensus 66 aF~FS~~Yk~~L~kqy~~l~pvarqr~~lc~VfaDATp----Tgwgi~i~~~~~~~Tfs~~l~IhtaELlaaClAr~~~- 140 (245)
T PF00336_consen 66 AFTFSPTYKAFLCKQYMNLYPVARQRPGLCQVFADATP----TGWGISITGQRMRGTFSKPLPIHTAELLAACLARLMS- 140 (245)
T ss_pred eeecCHHHHHHHHHhhccccccccCCCCCCceeccCCC----CcceeeecCceeeeeecccccchHHHHHHHHHHHhcc-
Confidence 44445555555443221 24456789999886 4555552222222222235678999999997776554
Q ss_pred HhhhhccCCcceEEEEeCCHHHH
Q psy10247 98 SLVIVDNFNFRSVIICSDSRSSL 120 (315)
Q Consensus 98 ~~~~~~~~~~~~i~I~sDS~~al 120 (315)
..++ |.|||..|+
T Consensus 141 ---------~~r~-l~tDnt~Vl 153 (245)
T PF00336_consen 141 ---------GARC-LGTDNTVVL 153 (245)
T ss_pred ---------CCcE-EeecCcEEE
Confidence 2333 999998766
No 15
>COG3341 Predicted double-stranded RNA/RNA-DNA hybrid binding protein [General function prediction only]
Probab=70.85 E-value=17 Score=31.72 Aligned_cols=144 Identities=16% Similarity=0.054 Sum_probs=85.9
Q ss_pred ccCCChHHHHHHHHHHHhh-----CCCceEEEEcCCCCCC-CeeEEEE-ECCee---eEEec---CCCCcHhHHHHHHHH
Q psy10247 24 KKSLIPQQARNSFLEFKSQ-----NLDSLFIFTDGTKTAT-NTGFAYV-SGDLC---QTYRL---NPLSSIFTAESLAIL 90 (315)
Q Consensus 24 k~~~~~~~~~~~~~~~~~~-----~~~~~~iytDGS~~~~-~~G~a~v-~~~~~---~~~~l---~~~~s~~~aEl~Ai~ 90 (315)
|+....++|...+..=++. ....+.-+.+|+.... +.+-..+ .+... ..+.- -...++..+|.+|++
T Consensus 38 Ksf~s~EeA~a~~~g~i~~~tp~~~~e~~i~~~~G~y~~~p~t~~~k~yr~k~~~~~~~lt~~~~~~~~~n~s~d~la~l 117 (225)
T COG3341 38 KSFKSYEEAEAYCEGNIESVTPYLDFEYIISWAKGDYDAKPGTQEFKEYRGKCTIEYSWLTESSEFSIKSNDSGDVLAKL 117 (225)
T ss_pred cccccHHHHHHHhccCccccCcccchhccceeccCCccccCCCcceeEEeccccccceeeeeecccccccCchHHHHHHh
Confidence 4566778888877642222 2355677788877642 2333333 33221 11111 124567789999999
Q ss_pred HHHHHHHHhhhhccCCcceEEEE----eCCHHHHHHHhcccccc-HHHHHHHHHHHHHhhc--CCcEEEEEeCCCCCCch
Q psy10247 91 KCLEYIMSLVIVDNFNFRSVIIC----SDSRSSLEALRTQFTLN-EISFNILCTVHQLKAR--DINIKFLWIPSHCGIVE 163 (315)
Q Consensus 91 ~aL~~~~~~~~~~~~~~~~i~I~----sDS~~al~~l~~~~~~~-~~~~~i~~~~~~l~~~--~~~v~~~WVpgH~g~~g 163 (315)
.+|+.++. ..+.+.++++ .||++..+-+.+-.-.. .+.. . ...-+. +....+.|+--|.++..
T Consensus 118 y~~~~~~~-----~~nrk~~i~y~~~~~ds~a~~k~~k~~~~~k~~~~~----~-~e~~~~~~~v~h~~k~i~~~~~~~~ 187 (225)
T COG3341 118 YGLRYEVP-----LDNRKSVINYLTPGNDSWAYFKYVKDKCETKVNLLK----D-REFFSIGKGVFHDEKDINIHIWIFE 187 (225)
T ss_pred cccccccc-----ccCccceeeccCCcchhHHHHHHHhhhhhhHHHHHH----h-HHhhhccchhhhhhhhcccccccch
Confidence 99998852 3345566667 79999988876644221 1100 0 111122 24556788999999999
Q ss_pred hhhhcHHHHHhHhh
Q psy10247 164 NERVDQAAKNSIYA 177 (315)
Q Consensus 164 Ne~AD~lAk~a~~~ 177 (315)
+..++.++..+...
T Consensus 188 ~~~~~s~~~~~~k~ 201 (225)
T COG3341 188 SKKGNSHVYNTSKK 201 (225)
T ss_pred hhhhhhhhhchhhh
Confidence 98888888765543
No 16
>PF05741 zf-nanos: Nanos RNA binding domain; InterPro: IPR024161 Nanos is a highly conserved RNA-binding protein in higher eukaryotes and functions as a key regulatory protein in translational control using a 3' untranslated region during the development and maintenance of germ cells. Nanos comprises a non-conserved amino-terminus and highly conserved carboxy- terminal regions. The C-terminal region has two conserved Cys-Cys-His-Cys (CCHC)-type zinc-finger motifs that are indispensable for nanos function [, , ]. The structure of the nanos-type zinc finger is composed of two independent zinc-finger (ZF) lobes, the N-terminal ZF1 and the C-terminal ZF2, which are connected by a linker helix []. These lobes create a large cleft. Zinc ions in ZF1 and ZF2 are bound to the CCHC motif by tetrahedral coordination.; PDB: 3ALR_B.
Probab=69.21 E-value=2.4 Score=28.61 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=10.2
Q ss_pred CCCCCCCccccccchhccccc
Q psy10247 261 PECRTCGVVLTIKHILTQCKA 281 (315)
Q Consensus 261 p~C~~Cg~~et~~H~l~~Cp~ 281 (315)
-.|+.||+..+-.|....||.
T Consensus 34 y~Cp~CgAtGd~AHT~~yCP~ 54 (55)
T PF05741_consen 34 YVCPICGATGDNAHTIKYCPK 54 (55)
T ss_dssp ---TTT---GGG---GGG-TT
T ss_pred CcCCCCcCcCccccccccCcC
Confidence 489999999999999999995
No 17
>KOG1994|consensus
Probab=54.39 E-value=3.7 Score=35.84 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=25.2
Q ss_pred hhhhhhhccCccchhhhhhcCCCCCCCCCCCCc-cccccchhcccccc
Q psy10247 236 EIAVCRLRIGHTKLTQEYLFKKDAPPECRTCGV-VLTIKHILTQCKAY 282 (315)
Q Consensus 236 ~~~l~qlrTGH~~l~h~~~~~~~~~p~C~~Cg~-~et~~H~l~~Cp~~ 282 (315)
+.+..-||.|| -.|-+||. -.|.+-++-+||--
T Consensus 229 t~in~~LR~eh--------------~YC~fCG~~y~~~edl~ehCPGv 262 (268)
T KOG1994|consen 229 TKINIFLRSEH--------------YYCFFCGIKYKDEEDLYEHCPGV 262 (268)
T ss_pred HHHHHHHhccc--------------eEEEEeccccCCHHHHHHhCCCC
Confidence 34556677776 26889997 68999999999953
No 18
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=52.80 E-value=17 Score=36.96 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEeCCCCCCchhhhh
Q psy10247 133 SFNILCTVHQLKARDINIKFLWIPSHCGIVENERV 167 (315)
Q Consensus 133 ~~~i~~~~~~l~~~~~~v~~~WVpgH~g~~gNe~A 167 (315)
-..++..++.+.+.|+.|-+-|||+|.+..||-.+
T Consensus 213 Pedfk~fVD~aH~~GIgViLD~V~~HF~~d~~~L~ 247 (628)
T COG0296 213 PEDFKALVDAAHQAGIGVILDWVPNHFPPDGNYLA 247 (628)
T ss_pred HHHHHHHHHHHHHcCCEEEEEecCCcCCCCcchhh
Confidence 35677778899999999999999999999888643
No 19
>KOG1812|consensus
Probab=41.45 E-value=72 Score=30.58 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=34.1
Q ss_pred CCcHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEeCCHHHHHHHhccc
Q psy10247 78 LSSIFTAESLAILKCLEYIMSLVIVDNFNFRSVIICSDSRSSLEALRTQF 127 (315)
Q Consensus 78 ~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~sDS~~al~~l~~~~ 127 (315)
..+...||++|+..+|..++ ..+...+++++|+.-....+....
T Consensus 46 ~~~~~~ae~~al~~~l~ea~------~~~~~~~~~~~d~~~~~~~v~~~~ 89 (384)
T KOG1812|consen 46 SITPLEAELMALKRGLTEAL------ELGLNHIVIYCDDELIYESVAGRE 89 (384)
T ss_pred ccchhhHHHHHHhhccHHHH------hhccccceEecccHHHHHHHhhhh
Confidence 36788999999999999995 357889999999766555444443
No 20
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=36.36 E-value=7.1 Score=29.23 Aligned_cols=44 Identities=20% Similarity=0.339 Sum_probs=23.1
Q ss_pred CCCCCCCCCcCCccccccccccc-cCCChHHHHHHHHHHHhhCCCce
Q psy10247 2 RENQTPPWIIASPTIIYLLNENK-KSLIPQQARNSFLEFKSQNLDSL 47 (315)
Q Consensus 2 ~~~~~ppW~~~~~~~~~~~~~~k-~~~~~~~~~~~~~~~~~~~~~~~ 47 (315)
.||.+|||..+.. ..|..+.. ...-+..+++.+.+|.+...|.+
T Consensus 20 ~Py~vP~w~P~~l--~~La~~~~~~~~I~~tvk~tl~eFkrtH~D~W 64 (90)
T PF11919_consen 20 FPYDVPPWMPEVL--EELARHANDPQPIRTTVKKTLSEFKRTHQDTW 64 (90)
T ss_dssp -S--SS-HHHHHH--HHHHTTSSS-SSHHHHTHHHHHHHHHHTSTTH
T ss_pred cCCCCcccHHHHH--HHHHHHhCCCchHHHHHHHHHHHHHHhCcccH
Confidence 4899999865543 23443222 22333677888888887765554
No 21
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=32.92 E-value=22 Score=21.18 Aligned_cols=20 Identities=25% Similarity=0.592 Sum_probs=15.1
Q ss_pred CCCCCCCCCccccccchhccccc
Q psy10247 259 APPECRTCGVVLTIKHILTQCKA 281 (315)
Q Consensus 259 ~~p~C~~Cg~~et~~H~l~~Cp~ 281 (315)
++-.|..|+... |++-+||.
T Consensus 7 ~~Y~C~~C~~~G---H~i~dCP~ 26 (32)
T PF13696_consen 7 PGYVCHRCGQKG---HWIQDCPT 26 (32)
T ss_pred CCCEeecCCCCC---ccHhHCCC
Confidence 345677787655 99999997
No 22
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=31.26 E-value=17 Score=20.83 Aligned_cols=20 Identities=25% Similarity=0.599 Sum_probs=8.9
Q ss_pred CCCCCCc--cccccchhccccc
Q psy10247 262 ECRTCGV--VLTIKHILTQCKA 281 (315)
Q Consensus 262 ~C~~Cg~--~et~~H~l~~Cp~ 281 (315)
.||.||. ....+-+.+.|+.
T Consensus 1 ~CP~C~s~l~~~~~ev~~~C~N 22 (28)
T PF03119_consen 1 TCPVCGSKLVREEGEVDIRCPN 22 (28)
T ss_dssp B-TTT--BEEE-CCTTCEEE--
T ss_pred CcCCCCCEeEcCCCCEeEECCC
Confidence 4899995 3445555666764
No 23
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=30.60 E-value=41 Score=17.03 Aligned_cols=17 Identities=35% Similarity=0.833 Sum_probs=12.0
Q ss_pred CCCCCCccccccchhccccc
Q psy10247 262 ECRTCGVVLTIKHILTQCKA 281 (315)
Q Consensus 262 ~C~~Cg~~et~~H~l~~Cp~ 281 (315)
.|..||. ..|+..+||.
T Consensus 2 ~C~~C~~---~GH~~~~Cp~ 18 (18)
T PF00098_consen 2 KCFNCGE---PGHIARDCPK 18 (18)
T ss_dssp BCTTTSC---SSSCGCTSSS
T ss_pred cCcCCCC---cCcccccCcc
Confidence 4666765 4688888883
No 24
>KOG4602|consensus
Probab=30.32 E-value=24 Score=31.50 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.5
Q ss_pred CCCCCCCCccccccchhcccccc
Q psy10247 260 PPECRTCGVVLTIKHILTQCKAY 282 (315)
Q Consensus 260 ~p~C~~Cg~~et~~H~l~~Cp~~ 282 (315)
+-.|+-||+..+-.|.+-+||+-
T Consensus 268 ~YVCPiCGATgDnAHTiKyCPl~ 290 (318)
T KOG4602|consen 268 SYVCPICGATGDNAHTIKYCPLA 290 (318)
T ss_pred hhcCccccccCCcccceeccccc
Confidence 57899999999999999999963
No 25
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=24.82 E-value=48 Score=22.93 Aligned_cols=15 Identities=20% Similarity=0.501 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCccc
Q psy10247 256 KKDAPPECRTCGVVL 270 (315)
Q Consensus 256 ~~~~~p~C~~Cg~~e 270 (315)
--.+...||.||..+
T Consensus 14 ~~~d~e~CP~Cgs~~ 28 (64)
T COG2093 14 TPEDTEICPVCGSTD 28 (64)
T ss_pred CCCCCccCCCCCCcc
Confidence 335556699999754
No 26
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=24.65 E-value=26 Score=20.50 Aligned_cols=20 Identities=30% Similarity=0.620 Sum_probs=7.9
Q ss_pred CCCCCCCccc-cccchhcccc
Q psy10247 261 PECRTCGVVL-TIKHILTQCK 280 (315)
Q Consensus 261 p~C~~Cg~~e-t~~H~l~~Cp 280 (315)
|.|+.|+... =.+..++-||
T Consensus 3 p~Cp~C~se~~y~D~~~~vCp 23 (30)
T PF08274_consen 3 PKCPLCGSEYTYEDGELLVCP 23 (30)
T ss_dssp ---TTT-----EE-SSSEEET
T ss_pred CCCCCCCCcceeccCCEEeCC
Confidence 7899998643 3455556676
No 27
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=24.34 E-value=48 Score=21.05 Aligned_cols=19 Identities=26% Similarity=0.658 Sum_probs=15.1
Q ss_pred CCCCCCCCccccccchhccccc
Q psy10247 260 PPECRTCGVVLTIKHILTQCKA 281 (315)
Q Consensus 260 ~p~C~~Cg~~et~~H~l~~Cp~ 281 (315)
...|..|+. ..|+.++||.
T Consensus 4 ~~~CqkC~~---~GH~tyeC~~ 22 (42)
T PF13917_consen 4 RVRCQKCGQ---KGHWTYECPN 22 (42)
T ss_pred CCcCcccCC---CCcchhhCCC
Confidence 467888885 4599999996
No 28
>PRK08298 cytidine deaminase; Validated
Probab=23.54 E-value=1.8e+02 Score=23.51 Aligned_cols=56 Identities=14% Similarity=0.142 Sum_probs=37.2
Q ss_pred EEcCCCCCCCeeEEEE--ECCeeeEEecCC--CCcHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEeCC
Q psy10247 50 FTDGTKTATNTGFAYV--SGDLCQTYRLNP--LSSIFTAESLAILKCLEYIMSLVIVDNFNFRSVIICSDS 116 (315)
Q Consensus 50 ytDGS~~~~~~G~a~v--~~~~~~~~~l~~--~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~sDS 116 (315)
|...| ++|+|+. +|+......+.. ..--.-||..||..|+..- ......|.|.+|.
T Consensus 19 Y~PYS----~VgAAllt~dG~i~tG~NvEnas~~~t~CAEr~Ai~~av~~G-------~~~~~~i~v~~~~ 78 (136)
T PRK08298 19 YPNGW----GGAAAMRVEDGTILTSVAPEVINASTELCMETGAICEAHKLQ-------KRVTHSICVAREN 78 (136)
T ss_pred cCCCC----ceeEEEEeCCCCEEEEEeecCCCCCcchhHHHHHHHHHHHCC-------CceEEEEEEEcCC
Confidence 66556 6999998 666666666532 2345679999999876332 1245677777776
No 29
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=23.47 E-value=3.3e+02 Score=20.58 Aligned_cols=53 Identities=11% Similarity=0.055 Sum_probs=30.2
Q ss_pred CeeEEEEEC-CeeeEEec----CCCCcHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEeCCH
Q psy10247 59 NTGFAYVSG-DLCQTYRL----NPLSSIFTAESLAILKCLEYIMSLVIVDNFNFRSVIICSDSR 117 (315)
Q Consensus 59 ~~G~a~v~~-~~~~~~~l----~~~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~sDS~ 117 (315)
.+|+.+|+. +....... ........||..||..+.+.. ........++|+--.
T Consensus 18 ~vgaviv~~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~~~~~~------~~~~~~~~~ly~t~E 75 (109)
T cd01285 18 PFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAARRL------GSYLLSGCTLYTTLE 75 (109)
T ss_pred cEEEEEEeCCCEEEEEEeCCCCCCCCCcccHHHHHHHHHHHHh------CCCccCCeEEEEeCC
Confidence 367767733 33222221 123356789999999887765 222355667776543
No 30
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=23.33 E-value=38 Score=27.28 Aligned_cols=8 Identities=38% Similarity=1.111 Sum_probs=5.2
Q ss_pred CCCCCCCc
Q psy10247 261 PECRTCGV 268 (315)
Q Consensus 261 p~C~~Cg~ 268 (315)
..||.||.
T Consensus 108 ~~CP~Cgs 115 (135)
T PRK03824 108 LKCPKCGS 115 (135)
T ss_pred cCCcCCCC
Confidence 34777775
No 31
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=23.28 E-value=44 Score=18.54 Aligned_cols=7 Identities=43% Similarity=1.208 Sum_probs=4.4
Q ss_pred CCCCCCc
Q psy10247 262 ECRTCGV 268 (315)
Q Consensus 262 ~C~~Cg~ 268 (315)
.|+.||.
T Consensus 4 ~Cp~Cg~ 10 (26)
T PF13248_consen 4 FCPNCGA 10 (26)
T ss_pred CCcccCC
Confidence 4666665
No 32
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=23.19 E-value=37 Score=26.44 Aligned_cols=7 Identities=29% Similarity=0.763 Sum_probs=3.2
Q ss_pred CCCCCCc
Q psy10247 262 ECRTCGV 268 (315)
Q Consensus 262 ~C~~Cg~ 268 (315)
.|..||.
T Consensus 72 ~C~~Cg~ 78 (113)
T PRK12380 72 WCWDCSQ 78 (113)
T ss_pred EcccCCC
Confidence 4444443
No 33
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=23.19 E-value=38 Score=26.46 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=9.9
Q ss_pred CCCCCCCccccccchhccccc
Q psy10247 261 PECRTCGVVLTIKHILTQCKA 281 (315)
Q Consensus 261 p~C~~Cg~~et~~H~l~~Cp~ 281 (315)
-.|..||..-.+....+.||.
T Consensus 71 ~~C~~Cg~~~~~~~~~~~CP~ 91 (115)
T TIGR00100 71 CECEDCSEEVSPEIDLYRCPK 91 (115)
T ss_pred EEcccCCCEEecCCcCccCcC
Confidence 455555544444333344553
No 34
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=21.86 E-value=37 Score=22.43 Aligned_cols=21 Identities=19% Similarity=0.594 Sum_probs=14.0
Q ss_pred CCCCCCCCccccccchhcccc
Q psy10247 260 PPECRTCGVVLTIKHILTQCK 280 (315)
Q Consensus 260 ~p~C~~Cg~~et~~H~l~~Cp 280 (315)
+-.||+||..-+...+..+|.
T Consensus 2 ~f~CP~C~~~~~~~~L~~H~~ 22 (54)
T PF05605_consen 2 SFTCPYCGKGFSESSLVEHCE 22 (54)
T ss_pred CcCCCCCCCccCHHHHHHHHH
Confidence 457999998546666655553
No 35
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=21.50 E-value=63 Score=22.14 Aligned_cols=21 Identities=24% Similarity=0.543 Sum_probs=14.4
Q ss_pred cCCCCCCCCCCCCc--cccccch
Q psy10247 255 FKKDAPPECRTCGV--VLTIKHI 275 (315)
Q Consensus 255 ~~~~~~p~C~~Cg~--~et~~H~ 275 (315)
|..++.|.||-|+. .+...++
T Consensus 34 Fs~~~~p~CPlC~s~M~~~~r~L 56 (59)
T PF14169_consen 34 FSFEEEPVCPLCKSPMVSGTRML 56 (59)
T ss_pred cccCCCccCCCcCCccccceeec
Confidence 45677899999986 3444443
No 36
>TIGR03847 conserved hypothetical protein. The conserved hypothetical protein described here occurs as part of the trio of uncharacterized proteins common in the Actinobacteria.
Probab=20.70 E-value=58 Score=27.45 Aligned_cols=23 Identities=30% Similarity=0.668 Sum_probs=16.8
Q ss_pred CCCCCCCCCCCcccc-ccchhcccccc
Q psy10247 257 KDAPPECRTCGVVLT-IKHILTQCKAY 282 (315)
Q Consensus 257 ~~~~p~C~~Cg~~et-~~H~l~~Cp~~ 282 (315)
....|.|+.||..-+ --|+ ||+-
T Consensus 153 aAGRP~CPlCg~PldP~GH~---Cpr~ 176 (177)
T TIGR03847 153 AAGRPPCPLCGRPIDPDGHI---CPRQ 176 (177)
T ss_pred hCCCCCCCCCCCCCCCCCcc---CCCC
Confidence 345699999998554 4677 8863
No 37
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=20.41 E-value=3e+02 Score=23.11 Aligned_cols=38 Identities=13% Similarity=-0.006 Sum_probs=21.3
Q ss_pred CeeEEEEECCeeeEEec----CCCCcHhHHHHHHHHHHHHHH
Q psy10247 59 NTGFAYVSGDLCQTYRL----NPLSSIFTAESLAILKCLEYI 96 (315)
Q Consensus 59 ~~G~a~v~~~~~~~~~l----~~~~s~~~aEl~Ai~~aL~~~ 96 (315)
.+|+.+|+.+...+... ...-....||+.||..|.+.+
T Consensus 34 pvGAVIV~~g~IIa~g~N~~~~~~d~~~HAEi~Ai~~a~~~~ 75 (172)
T PRK10860 34 PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVL 75 (172)
T ss_pred CEEEEEEeCCEEEEEeeCCCCCCCCCccCHHHHHHHHHHHhc
Confidence 47777774333222211 111124579999998887654
No 38
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=20.33 E-value=42 Score=28.78 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=14.3
Q ss_pred CCCCCCCcccc--------ccchhcccccc
Q psy10247 261 PECRTCGVVLT--------IKHILTQCKAY 282 (315)
Q Consensus 261 p~C~~Cg~~et--------~~H~l~~Cp~~ 282 (315)
-.||.||..++ -.|.+..|+.=
T Consensus 7 ~~Cp~Cg~eev~hEVik~~g~~~lvrC~eC 36 (201)
T COG1326 7 IECPSCGSEEVSHEVIKERGREPLVRCEEC 36 (201)
T ss_pred EECCCCCcchhhHHHHHhcCCceEEEccCC
Confidence 47888884333 45677777743
No 39
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=20.07 E-value=48 Score=25.86 Aligned_cols=8 Identities=38% Similarity=0.667 Sum_probs=3.7
Q ss_pred CCCCCCCc
Q psy10247 261 PECRTCGV 268 (315)
Q Consensus 261 p~C~~Cg~ 268 (315)
-.|..||.
T Consensus 71 ~~C~~Cg~ 78 (114)
T PRK03681 71 CWCETCQQ 78 (114)
T ss_pred EEcccCCC
Confidence 34444543
Done!