Query psy10247
Match_columns 315
No_of_seqs 186 out of 1554
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 21:37:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10247.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10247hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.9 1.4E-24 4.7E-29 179.9 12.5 128 44-178 5-152 (154)
2 3h08_A RNH (ribonuclease H); R 99.9 4.1E-24 1.4E-28 175.4 11.4 123 45-177 3-144 (146)
3 3qio_A GAG-POL polyprotein; RN 99.9 6.1E-24 2.1E-28 175.0 11.9 124 43-177 9-147 (150)
4 2kq2_A Ribonuclease H-related 99.9 6.8E-25 2.3E-29 180.3 5.3 127 43-179 3-139 (147)
5 3p1g_A Xenotropic murine leuke 99.9 1.9E-23 6.4E-28 174.5 12.1 126 45-180 22-159 (165)
6 1jl1_A Ribonuclease HI; RNAse 99.9 2.3E-23 7.8E-28 172.7 10.5 126 45-180 3-146 (155)
7 2e4l_A Ribonuclease HI, RNAse 99.9 3.3E-23 1.1E-27 172.3 11.0 125 45-179 5-148 (158)
8 1ril_A Ribonuclease H; hydrola 99.9 1.2E-22 4.3E-27 170.1 6.8 125 45-179 7-150 (166)
9 2lsn_A Reverse transcriptase; 99.9 1E-21 3.6E-26 163.8 12.0 127 44-177 5-163 (165)
10 3u3g_D Ribonuclease H, RNAse H 99.8 1.5E-20 5.1E-25 152.3 12.0 122 45-177 2-137 (140)
11 3hst_B Protein RV2228C/MT2287; 99.8 3.7E-20 1.3E-24 150.4 12.8 124 45-178 2-134 (141)
12 2ehg_A Ribonuclease HI; RNAse 99.8 1.7E-19 5.7E-24 148.3 10.3 121 47-178 2-135 (149)
13 1mu2_A HIV-2 RT; HIV-2 reverse 99.8 3.7E-19 1.3E-23 175.7 11.6 116 44-175 434-555 (555)
14 2zd1_A Reverse transcriptase/r 99.8 2.1E-19 7.1E-24 177.6 9.6 116 44-174 437-557 (557)
15 1zbf_A Ribonuclease H-related 99.4 5.7E-14 1.9E-18 113.9 4.3 117 43-169 8-139 (142)
16 4htu_A Ribonuclease H, RNAse H 99.2 1.6E-11 5.6E-16 97.8 7.3 75 44-126 3-83 (134)
17 1rw3_A POL polyprotein; RNA an 79.7 0.32 1.1E-05 46.0 -0.4 73 45-126 345-428 (455)
18 2zd1_B P51 RT; P51/P66, hetero 74.3 6.3 0.00021 36.8 6.9 86 29-119 296-399 (428)
19 3alr_A Nanos protein; zinc-fin 63.9 3 0.0001 30.8 1.7 26 261-286 72-97 (106)
20 2z3g_A Blasticidin-S deaminase 33.7 60 0.002 24.8 4.8 51 59-116 28-80 (130)
21 2akl_A PHNA-like protein PA012 33.6 18 0.0006 27.9 1.7 28 258-285 25-53 (138)
22 2fr5_A Cytidine deaminase; tet 29.3 98 0.0033 24.1 5.5 52 59-117 37-92 (146)
23 1r5t_A Cytidine deaminase; zin 23.6 1.6E+02 0.0055 22.7 5.8 53 59-117 33-89 (142)
24 2lnd_A De novo designed protei 23.0 1.8E+02 0.006 20.3 5.1 64 133-197 37-100 (112)
25 2zd1_A Reverse transcriptase/r 22.1 2.9E+02 0.01 26.2 8.6 87 29-121 298-403 (557)
26 2nx8_A TRNA-specific adenosine 22.0 1E+02 0.0035 24.8 4.5 50 59-114 37-90 (179)
27 2d30_A Cytidine deaminase; pur 21.6 1.3E+02 0.0046 23.2 4.9 52 59-117 34-89 (141)
28 1uwz_A Cytidine deaminase; CDD 20.8 2.2E+02 0.0075 21.7 6.0 52 59-117 25-80 (136)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.92 E-value=1.4e-24 Score=179.86 Aligned_cols=128 Identities=20% Similarity=0.356 Sum_probs=96.7
Q ss_pred CCceEEEEcCCCCCCC-----eeEEEE--ECC-eeeEEecCCCCcHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEeC
Q psy10247 44 LDSLFIFTDGTKTATN-----TGFAYV--SGD-LCQTYRLNPLSSIFTAESLAILKCLEYIMSLVIVDNFNFRSVIICSD 115 (315)
Q Consensus 44 ~~~~~iytDGS~~~~~-----~G~a~v--~~~-~~~~~~l~~~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~sD 115 (315)
++.+.||||||+..++ +|+|+| ++. ...+..+...+|++.||+.|++.||+.+.. .+...|.|+||
T Consensus 5 ~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~------~~~~~v~i~tD 78 (154)
T 2qkb_A 5 GDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKT------QNINKLVLYTN 78 (154)
T ss_dssp TTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHH------TTCCEEEEEES
T ss_pred CCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHh------CCCceEEEEEC
Confidence 5679999999987532 789988 222 223445655789999999999999999953 35689999999
Q ss_pred CHHHHHHHhcc--------cccc---HH-HHHHHHHHHHHhhcCCcEEEEEeCCCCCCchhhhhcHHHHHhHhhc
Q psy10247 116 SRSSLEALRTQ--------FTLN---EI-SFNILCTVHQLKARDINIKFLWIPSHCGIVENERVDQAAKNSIYAQ 178 (315)
Q Consensus 116 S~~al~~l~~~--------~~~~---~~-~~~i~~~~~~l~~~~~~v~~~WVpgH~g~~gNe~AD~lAk~a~~~~ 178 (315)
|++|++.|.+. +..+ ++ ...++..+..+.. +..|.|.|||||+|++|||.||+|||+|+..+
T Consensus 79 S~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~-~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 79 SMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQ-GMDIQWMHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp CHHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHT-TCEEEEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred cHHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHc-CCceEEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 99999999873 2211 11 1334444444433 46799999999999999999999999998753
No 2
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.91 E-value=4.1e-24 Score=175.41 Aligned_cols=123 Identities=20% Similarity=0.259 Sum_probs=89.8
Q ss_pred CceEEEEcCCCCCC--CeeEEEE--ECCeee--EEecCCCCcHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEeCCHH
Q psy10247 45 DSLFIFTDGTKTAT--NTGFAYV--SGDLCQ--TYRLNPLSSIFTAESLAILKCLEYIMSLVIVDNFNFRSVIICSDSRS 118 (315)
Q Consensus 45 ~~~~iytDGS~~~~--~~G~a~v--~~~~~~--~~~l~~~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~sDS~~ 118 (315)
..++||||||+..+ .+|+|+| .++... +..+ ..+|++.||+.|++.||+.+. . ...|.|+|||++
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~A~~~AL~~~~------~--~~~v~I~tDS~~ 73 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYD-PATTNNRMELMAAIKGLEALK------E--PARVQLYSDSAY 73 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCS------S--CCEEEEEESCHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCC-CCCcHHHHHHHHHHHHHHhcC------c--cCcEEEEeChHH
Confidence 57899999998864 3788887 444222 2223 368999999999999999982 2 589999999999
Q ss_pred HHHHHhccc---------ccc---H-HHHHHHHHHHHHhhcCCcEEEEEeCCCCCCchhhhhcHHHHHhHhh
Q psy10247 119 SLEALRTQF---------TLN---E-ISFNILCTVHQLKARDINIKFLWIPSHCGIVENERVDQAAKNSIYA 177 (315)
Q Consensus 119 al~~l~~~~---------~~~---~-~~~~i~~~~~~l~~~~~~v~~~WVpgH~g~~gNe~AD~lAk~a~~~ 177 (315)
|++.|.+.+ ..+ + ....++..+..+... .+|.|.|||||+|+++||.||+|||+|+..
T Consensus 74 vi~~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~-~~v~~~~V~gH~g~~~N~~AD~LA~~a~~~ 144 (146)
T 3h08_A 74 LVNAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTL-HRVTFHKVKGHSDNPYNSRADELARLAIKE 144 (146)
T ss_dssp HHHHHHSSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHH-SEEEEEECCC-CCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhh-CceEEEEcCCcCCcHhHHHHHHHHHHHHHh
Confidence 999998831 110 1 112334333333332 579999999999999999999999999875
No 3
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.90 E-value=6.1e-24 Score=175.04 Aligned_cols=124 Identities=19% Similarity=0.246 Sum_probs=92.0
Q ss_pred CCCceEEEEcCCCCCC--CeeEEEE-ECCeeeEEecCCCCcHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEeCCHHH
Q psy10247 43 NLDSLFIFTDGTKTAT--NTGFAYV-SGDLCQTYRLNPLSSIFTAESLAILKCLEYIMSLVIVDNFNFRSVIICSDSRSS 119 (315)
Q Consensus 43 ~~~~~~iytDGS~~~~--~~G~a~v-~~~~~~~~~l~~~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~sDS~~a 119 (315)
.++.+.||||||+..+ ..|+|++ ..+......+ ..+|++.||+.|++.||+.+ ...|.|+|||+++
T Consensus 9 ~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~Tnn~aEl~A~i~AL~~~----------~~~v~i~tDS~~v 77 (150)
T 3qio_A 9 IVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLALQDS----------GLEVNIVTDSQYA 77 (150)
T ss_dssp CTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHHS----------CSEEEEEESCHHH
T ss_pred CCCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEeC-CCCCHHHHHHHHHHHHHHhC----------CCcEEEEeCcHHH
Confidence 4578999999998753 4788877 2222233344 47899999999999999875 3789999999999
Q ss_pred HHHHhccc--------cc---cHH-HHHHHHHHHHHhhcCCcEEEEEeCCCCCCchhhhhcHHHHHhHhh
Q psy10247 120 LEALRTQF--------TL---NEI-SFNILCTVHQLKARDINIKFLWIPSHCGIVENERVDQAAKNSIYA 177 (315)
Q Consensus 120 l~~l~~~~--------~~---~~~-~~~i~~~~~~l~~~~~~v~~~WVpgH~g~~gNe~AD~lAk~a~~~ 177 (315)
+++|.++. .+ .++ -..++..+..+...+.+|.|.|||||+|++|||.||+||++|+..
T Consensus 78 ~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 78 LGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 99998751 11 111 123444433333467899999999999999999999999998764
No 4
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.90 E-value=6.8e-25 Score=180.30 Aligned_cols=127 Identities=16% Similarity=0.102 Sum_probs=96.6
Q ss_pred CCCceEEEEcCCCCCCCeeEEEE--ECCee--eEE-ec--CC--CCcHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEE
Q psy10247 43 NLDSLFIFTDGTKTATNTGFAYV--SGDLC--QTY-RL--NP--LSSIFTAESLAILKCLEYIMSLVIVDNFNFRSVIIC 113 (315)
Q Consensus 43 ~~~~~~iytDGS~~~~~~G~a~v--~~~~~--~~~-~l--~~--~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~ 113 (315)
+++.+.||||||+..+.+|+|+| ..+.. .+. .. +. .+||+.||+.|++.||+.++. . +. .|.|+
T Consensus 3 ~~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~----~--~~-~v~I~ 75 (147)
T 2kq2_A 3 DRTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQ----L--GV-KIRIL 75 (147)
T ss_dssp TTSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHH----H--TC-CCCBS
T ss_pred CCCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHH----C--CC-eEEEE
Confidence 35789999999999877899987 43332 222 22 21 368999999999999998864 2 34 89999
Q ss_pred eCCHHHHHHHhcccccc-HHHHHHHHHHHHHhhcCCcEEEEEeCCCCCCchhhhhcHHHHHhHhhcc
Q psy10247 114 SDSRSSLEALRTQFTLN-EISFNILCTVHQLKARDINIKFLWIPSHCGIVENERVDQAAKNSIYAQL 179 (315)
Q Consensus 114 sDS~~al~~l~~~~~~~-~~~~~i~~~~~~l~~~~~~v~~~WVpgH~g~~gNe~AD~lAk~a~~~~~ 179 (315)
|||+.+.+.+.+.+..+ +....+...++.+.. +|.|.|||||+|++|||.||+|||+|+....
T Consensus 76 tDS~~i~~w~~~~w~~~~~~~~~~~~l~~~l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~ 139 (147)
T 2kq2_A 76 HDYAGIAFWATGEWKAKNEFTQAYAKLMNQYRG---IYSFEKVKAHSGNEFNDYVDMKAKSALGIRD 139 (147)
T ss_dssp SCCSTHHHHTTSSSSCCHHHHHHHHCGGGGGST---TCCBCCCCCCCCCHHHHHHHHHHHHHHTCCC
T ss_pred ECcHHHHHHHhCCCccCCcchHHHHHHHHHhcC---CeeEEEecCcCCCcchHHHHHHHHHHHhccc
Confidence 99999998888877654 233334433344432 8999999999999999999999999997654
No 5
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.90 E-value=1.9e-23 Score=174.54 Aligned_cols=126 Identities=19% Similarity=0.203 Sum_probs=92.4
Q ss_pred CceEEEEcCCCC--CCCeeEEEE--EC-CeeeEEecCCCCcHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEeCCHHH
Q psy10247 45 DSLFIFTDGTKT--ATNTGFAYV--SG-DLCQTYRLNPLSSIFTAESLAILKCLEYIMSLVIVDNFNFRSVIICSDSRSS 119 (315)
Q Consensus 45 ~~~~iytDGS~~--~~~~G~a~v--~~-~~~~~~~l~~~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~sDS~~a 119 (315)
..+.||||||+. ++..|+|++ .+ ...........+||+.||+.|++.||+.+ ....+.|+|||+++
T Consensus 22 ~~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~---------~~~~v~I~tDS~~v 92 (165)
T 3p1g_A 22 ADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA---------EGKKLNVYTDSRYA 92 (165)
T ss_dssp CSEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT---------BTSEEEEEECCHHH
T ss_pred CCEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc---------cCceEEEEEchHHH
Confidence 359999999997 444677765 33 33333345568899999999999999987 26799999999999
Q ss_pred HHHHhccccccHH-HHHHHHHH-HHHhhcCCcEEEEEeCCCCC-----CchhhhhcHHHHHhHhhccc
Q psy10247 120 LEALRTQFTLNEI-SFNILCTV-HQLKARDINIKFLWIPSHCG-----IVENERVDQAAKNSIYAQLL 180 (315)
Q Consensus 120 l~~l~~~~~~~~~-~~~i~~~~-~~l~~~~~~v~~~WVpgH~g-----~~gNe~AD~lAk~a~~~~~~ 180 (315)
++.+-......++ -..++..+ ..+ ..+.+|.|.|||||+| +.|||.||+|||+|+..+.+
T Consensus 93 i~~iw~~~~g~~v~n~dl~~~l~~~l-~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~~~ 159 (165)
T 3p1g_A 93 FATAHVHSEGREIKNKNEILALLKAL-FLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAVL 159 (165)
T ss_dssp HHHHHSCCCSCCCSSHHHHHHHHHHT-TSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhhhcccCCCcccCHHHHHHHHHHH-hcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcCCC
Confidence 9998321111121 12323222 333 3578999999999999 99999999999999987644
No 6
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.89 E-value=2.3e-23 Score=172.71 Aligned_cols=126 Identities=20% Similarity=0.303 Sum_probs=94.1
Q ss_pred CceEEEEcCCCCCC--CeeEEEE--ECCee--eEEecCCCCcHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEeCCHH
Q psy10247 45 DSLFIFTDGTKTAT--NTGFAYV--SGDLC--QTYRLNPLSSIFTAESLAILKCLEYIMSLVIVDNFNFRSVIICSDSRS 118 (315)
Q Consensus 45 ~~~~iytDGS~~~~--~~G~a~v--~~~~~--~~~~l~~~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~sDS~~ 118 (315)
..+.||||||+..+ .+|+|+| ..+.. .+..+ ..+|++.||+.|++.||+.+. . ...|.|+|||++
T Consensus 3 ~~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~------~--~~~v~I~tDS~~ 73 (155)
T 1jl1_A 3 KQVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALK------E--HAEVILSTDSQY 73 (155)
T ss_dssp CCEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCC------S--CCEEEEEECCHH
T ss_pred ceEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhC------c--CCcEEEEeCHHH
Confidence 46899999999853 4788887 33322 22223 367899999999999999983 2 379999999999
Q ss_pred HHHHHhc--------ccccc---HH-HHHHHHHHHHHhhcCCcEEEEEeCCCCCCchhhhhcHHHHHhHhhccc
Q psy10247 119 SLEALRT--------QFTLN---EI-SFNILCTVHQLKARDINIKFLWIPSHCGIVENERVDQAAKNSIYAQLL 180 (315)
Q Consensus 119 al~~l~~--------~~~~~---~~-~~~i~~~~~~l~~~~~~v~~~WVpgH~g~~gNe~AD~lAk~a~~~~~~ 180 (315)
|++.|.+ .+.++ ++ -..++..+..+.. ...|.|.|||||+|++||+.||+||++|+..+.+
T Consensus 74 vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 146 (155)
T 1jl1_A 74 VRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG-QHQIKWEWVKGHAGHPENERADELARAAAMNPTL 146 (155)
T ss_dssp HHHHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTT-TCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCCB
T ss_pred HHHHHHHHHHHHhhcccccccCCccCCHHHHHHHHHHHc-cCceEEEEcCCCCCCHHHHHHHHHHHHHHhccch
Confidence 9999987 22211 11 1234444444443 4689999999999999999999999999987654
No 7
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.89 E-value=3.3e-23 Score=172.26 Aligned_cols=125 Identities=24% Similarity=0.333 Sum_probs=92.9
Q ss_pred CceEEEEcCCCCCC--CeeEEEE--ECCee--eEEecCCCCcHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEeCCHH
Q psy10247 45 DSLFIFTDGTKTAT--NTGFAYV--SGDLC--QTYRLNPLSSIFTAESLAILKCLEYIMSLVIVDNFNFRSVIICSDSRS 118 (315)
Q Consensus 45 ~~~~iytDGS~~~~--~~G~a~v--~~~~~--~~~~l~~~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~sDS~~ 118 (315)
..+.||||||+..+ .+|+|+| +++.. .+..+ ..+|++.||+.|++.||+.+ .. ...|.|+|||++
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~------~~--~~~v~I~tDS~~ 75 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEAL------KE--PCKIILTSDSQY 75 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTC------SS--CCEEEEEECCHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHh------cc--CCeEEEEeCHHH
Confidence 46899999999853 4788887 44322 22223 35799999999999999987 22 389999999999
Q ss_pred HHHHHhc--------ccccc---HH-HHHHHHHHHHHhhcCCcEEEEEeCCCCCCchhhhhcHHHHHhHhh-cc
Q psy10247 119 SLEALRT--------QFTLN---EI-SFNILCTVHQLKARDINIKFLWIPSHCGIVENERVDQAAKNSIYA-QL 179 (315)
Q Consensus 119 al~~l~~--------~~~~~---~~-~~~i~~~~~~l~~~~~~v~~~WVpgH~g~~gNe~AD~lAk~a~~~-~~ 179 (315)
|++.|.+ .+..+ ++ -..++..+..+.. ...|.|.|||||+|+++|+.||+||++|+.. +.
T Consensus 76 vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~~ 148 (158)
T 2e4l_A 76 MRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQ-LHQIDWRWVKGHAGHAENERCDQLARAAAEANPT 148 (158)
T ss_dssp HHHHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHT-TSEEEEEECCTTCCCHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHccccccCCCcccCHHHHHHHHHHHc-cCcEEEEEccCCCCchhHHHHHHHHHHHHHhchh
Confidence 9999988 33211 11 1234444444433 3689999999999999999999999999987 44
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.87 E-value=1.2e-22 Score=170.08 Aligned_cols=125 Identities=20% Similarity=0.206 Sum_probs=92.1
Q ss_pred CceEEEEcCCCCCC--CeeEEEE--ECCee--eEEecCCCCcHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEeCCHH
Q psy10247 45 DSLFIFTDGTKTAT--NTGFAYV--SGDLC--QTYRLNPLSSIFTAESLAILKCLEYIMSLVIVDNFNFRSVIICSDSRS 118 (315)
Q Consensus 45 ~~~~iytDGS~~~~--~~G~a~v--~~~~~--~~~~l~~~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~sDS~~ 118 (315)
..+.||||||+..+ .+|+|+| +.+.. .+... ..+|++.||+.|++.||+.+. . ...|.|+|||++
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~Ai~~AL~~~~------~--~~~v~I~tDS~~ 77 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGE-ACTTNNRMELKAAIEGLKALK------E--PCEVDLYTDSHY 77 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEE-EEECHHHHHHHHHHHHHHSCC------S--CCEEEEECCCHH
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCC-CCCcHHHHHHHHHHHHHHHhc------c--CCeEEEEeChHH
Confidence 57899999999853 4788887 33221 11122 367899999999999999872 2 358999999999
Q ss_pred HHHHHhcc---------cccc---HH-HHHHHHHHHHHhhcCCcEEEEEeCCCCCCchhhhhcHHHHHhHhhcc
Q psy10247 119 SLEALRTQ---------FTLN---EI-SFNILCTVHQLKARDINIKFLWIPSHCGIVENERVDQAAKNSIYAQL 179 (315)
Q Consensus 119 al~~l~~~---------~~~~---~~-~~~i~~~~~~l~~~~~~v~~~WVpgH~g~~gNe~AD~lAk~a~~~~~ 179 (315)
|++.|.+. +..+ ++ -..++..+..+.. ...|.|.|||||+|+++|+.||+|||+|+....
T Consensus 78 vi~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 78 LKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMA-PHRVRFHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp HHHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHT-TSEEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred HHHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHh-cCeEEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 99999982 2211 11 1234444444443 368999999999999999999999999998754
No 9
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.86 E-value=1e-21 Score=163.78 Aligned_cols=127 Identities=15% Similarity=0.132 Sum_probs=90.3
Q ss_pred CCceEEEEcCCCCC--CC-----eeEEEE--E-CC---eeeEEec-CCCCcHhHHHHHHHHHHHHHHHHhhhhccCCcce
Q psy10247 44 LDSLFIFTDGTKTA--TN-----TGFAYV--S-GD---LCQTYRL-NPLSSIFTAESLAILKCLEYIMSLVIVDNFNFRS 109 (315)
Q Consensus 44 ~~~~~iytDGS~~~--~~-----~G~a~v--~-~~---~~~~~~l-~~~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~ 109 (315)
.-.++||||||+.. +. +|+|+| . +. ....+.. ....+++.||+.|+..||+.++. ....
T Consensus 5 ~~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~-------~~~~ 77 (165)
T 2lsn_A 5 QYEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALK-------IPGP 77 (165)
T ss_dssp CCSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHH-------SSSC
T ss_pred CceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhc-------CCCe
Confidence 45689999999874 22 789987 2 22 2233333 24678889999999999988754 3457
Q ss_pred EEEEeCCHHHHHHHhcc--------ccc---cHH-HHHHHHHHHHHhhcCCcEEEEEeCCCCCC------chhhhhcHHH
Q psy10247 110 VIICSDSRSSLEALRTQ--------FTL---NEI-SFNILCTVHQLKARDINIKFLWIPSHCGI------VENERVDQAA 171 (315)
Q Consensus 110 i~I~sDS~~al~~l~~~--------~~~---~~~-~~~i~~~~~~l~~~~~~v~~~WVpgH~g~------~gNe~AD~lA 171 (315)
|.|+|||++|+++|..+ +.+ .++ -..++..+..+.....+|.|.|||||+|. +|||+||+||
T Consensus 78 v~I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA 157 (165)
T 2lsn_A 78 VLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLA 157 (165)
T ss_dssp EEEEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHH
T ss_pred EEEEeChHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHH
Confidence 99999999999999752 211 121 12344444444445578999999999995 6899999999
Q ss_pred HHhHhh
Q psy10247 172 KNSIYA 177 (315)
Q Consensus 172 k~a~~~ 177 (315)
++|+..
T Consensus 158 ~~gA~~ 163 (165)
T 2lsn_A 158 TQGSYV 163 (165)
T ss_dssp HHHHHH
T ss_pred HHhhhh
Confidence 999854
No 10
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.84 E-value=1.5e-20 Score=152.35 Aligned_cols=122 Identities=20% Similarity=0.315 Sum_probs=91.5
Q ss_pred CceEEEEcCCCCCC--CeeEEEE--E--CCee--eEEecCCCCcHhHHHHHHHHHHHHHHHHhhhhccCCcc----eEEE
Q psy10247 45 DSLFIFTDGTKTAT--NTGFAYV--S--GDLC--QTYRLNPLSSIFTAESLAILKCLEYIMSLVIVDNFNFR----SVII 112 (315)
Q Consensus 45 ~~~~iytDGS~~~~--~~G~a~v--~--~~~~--~~~~l~~~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~----~i~I 112 (315)
..+.||||||+..+ .+|+|++ + +... .+..+ ..+|++.||+.|++.||+.+.. .+.+ +|.|
T Consensus 2 ~~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~------~~~~~~~~~v~i 74 (140)
T 3u3g_D 2 NKIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYI-GETTNNVAEYEALIRALEDLQM------FGDKLVDMEVEV 74 (140)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEE-EEECHHHHHHHHHHHHHHHHGG------GGGGGTTCEEEE
T ss_pred ceEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeC-CCCchHHHHHHHHHHHHHHHHH------cCCCCCCceEEE
Confidence 36899999999753 5888887 3 2222 12223 3579999999999999999943 3455 9999
Q ss_pred EeCCHHHHHHHhccccc-cHHHHHHHHHHHHH-hhcCCcEEEEEeCCCCCCchhhhhcHHHHHhHhh
Q psy10247 113 CSDSRSSLEALRTQFTL-NEISFNILCTVHQL-KARDINIKFLWIPSHCGIVENERVDQAAKNSIYA 177 (315)
Q Consensus 113 ~sDS~~al~~l~~~~~~-~~~~~~i~~~~~~l-~~~~~~v~~~WVpgH~g~~gNe~AD~lAk~a~~~ 177 (315)
+|||+++++.+++.+.. ++....++..+..+ .+....|.|.||| .++|+.||+|||+|+..
T Consensus 75 ~tDS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~----~~~N~~AD~LA~~a~~~ 137 (140)
T 3u3g_D 75 RMDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIP----REKNARADELVNEAIDK 137 (140)
T ss_dssp EESCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECC----GGGGHHHHHHHHHHHHH
T ss_pred EeChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcC----chhhHHHHHHHHHHHHh
Confidence 99999999999997742 33233344455555 5556799999999 58999999999999865
No 11
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.83 E-value=3.7e-20 Score=150.42 Aligned_cols=124 Identities=15% Similarity=0.240 Sum_probs=95.2
Q ss_pred CceEEEEcCCCCCC--CeeEEEE--EC---CeeeEEe-cCCCCcHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEeCC
Q psy10247 45 DSLFIFTDGTKTAT--NTGFAYV--SG---DLCQTYR-LNPLSSIFTAESLAILKCLEYIMSLVIVDNFNFRSVIICSDS 116 (315)
Q Consensus 45 ~~~~iytDGS~~~~--~~G~a~v--~~---~~~~~~~-l~~~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~sDS 116 (315)
..+.||||||+..+ .+|+|+| +. .....++ ....+|++.||+.|++.||+.+.. .+..+|.|+|||
T Consensus 2 ~~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~------~~~~~v~i~tDS 75 (141)
T 3hst_B 2 VKVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVK------LGATEAAVLMDS 75 (141)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEEEECHHHHHHHHHHHHHHHHHH------HTCSEEEEEESC
T ss_pred cEEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCCCCchHHHHHHHHHHHHHHHHH------CCCceEEEEeCh
Confidence 35899999998853 5788877 32 2222221 123789999999999999999954 356899999999
Q ss_pred HHHHHHHhcccc-ccHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCCchhhhhcHHHHHhHhhc
Q psy10247 117 RSSLEALRTQFT-LNEISFNILCTVHQLKARDINIKFLWIPSHCGIVENERVDQAAKNSIYAQ 178 (315)
Q Consensus 117 ~~al~~l~~~~~-~~~~~~~i~~~~~~l~~~~~~v~~~WVpgH~g~~gNe~AD~lAk~a~~~~ 178 (315)
+++++.+++.+. .++....+...+..+...+..|.|.||| .++|+.||+|||+|+...
T Consensus 76 ~~vv~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~----~~~N~~AD~LA~~a~~~~ 134 (141)
T 3hst_B 76 KLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVP----RARNTYADRLANDAMDAA 134 (141)
T ss_dssp HHHHHHHTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECC----GGGCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcC----CcccHHHHHHHHHHHHHh
Confidence 999999999764 3343445555666676677999999999 489999999999998753
No 12
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.80 E-value=1.7e-19 Score=148.27 Aligned_cols=121 Identities=17% Similarity=0.263 Sum_probs=89.4
Q ss_pred eEEEEcCCCCC---CCeeE-EEE--E-CCeeeEEe--cC---CCCcHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEe
Q psy10247 47 LFIFTDGTKTA---TNTGF-AYV--S-GDLCQTYR--LN---PLSSIFTAESLAILKCLEYIMSLVIVDNFNFRSVIICS 114 (315)
Q Consensus 47 ~~iytDGS~~~---~~~G~-a~v--~-~~~~~~~~--l~---~~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~s 114 (315)
+.||||||+.+ +++|+ |++ + +.....++ ++ ..+|++.||+.|++.||+.+.. .+..+|.|+|
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~------~g~~~v~i~t 75 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLR------LGISSPIIKG 75 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHH------HTCCSCEEEE
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHH------cCCCEEEEEe
Confidence 67999999872 45775 876 3 33322222 22 3789999999999999999954 2567899999
Q ss_pred CCHHHHHHHhcccccc-HHHHHHHHHHHHHhhcCCcEEEEEeCCCCCCchhhhhcHHHHHhHhhc
Q psy10247 115 DSRSSLEALRTQFTLN-EISFNILCTVHQLKARDINIKFLWIPSHCGIVENERVDQAAKNSIYAQ 178 (315)
Q Consensus 115 DS~~al~~l~~~~~~~-~~~~~i~~~~~~l~~~~~~v~~~WVpgH~g~~gNe~AD~lAk~a~~~~ 178 (315)
||+++++.+++.+..+ +....++..+..+.+.. +|.|.|||+ .+|+.||+||++|+...
T Consensus 76 DS~~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~----~~N~~AD~LA~~a~~~~ 135 (149)
T 2ehg_A 76 DSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPR----EENKEADRLSRVAYELV 135 (149)
T ss_dssp SCHHHHHHHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCG----GGCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCC----cccHHHHHHHHHHHHhh
Confidence 9999999999986532 33344444444444333 599999998 49999999999998764
No 13
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.78 E-value=3.7e-19 Score=175.72 Aligned_cols=116 Identities=25% Similarity=0.292 Sum_probs=89.8
Q ss_pred CCceEEEEcCCCCCC--CeeEEEE--ECCeeeEEecCCCCcHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEeCCHHH
Q psy10247 44 LDSLFIFTDGTKTAT--NTGFAYV--SGDLCQTYRLNPLSSIFTAESLAILKCLEYIMSLVIVDNFNFRSVIICSDSRSS 119 (315)
Q Consensus 44 ~~~~~iytDGS~~~~--~~G~a~v--~~~~~~~~~l~~~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~sDS~~a 119 (315)
++.+.||||||+..+ ..|+|++ .++ ...... ..+||+.||+.|++.||+. ....+.|+|||++|
T Consensus 434 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~-~~~~~~-~~~TNn~aEl~A~i~aL~~----------~~~~v~I~tDS~~v 501 (555)
T 1mu2_A 434 PGAETFYTDGSCNRQSKEGKAGYVTDRGK-DKVKKL-EQTTNQQAELEAFAMALTD----------SGPKVNIIVDSQYV 501 (555)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSC-EEEEEE-SSCCHHHHHHHHHHHHHHT----------SCSEEEEEESCHHH
T ss_pred CCceEEEEcccccCCCCCceEEEEEEeCC-EeeccC-CCCCHHHHHHHHHHHHHHc----------CCCeEEEEEehHHH
Confidence 567999999998854 3788877 333 223333 4789999999999999986 25789999999999
Q ss_pred HHHHhcccc--ccHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCCchhhhhcHHHHHhH
Q psy10247 120 LEALRTQFT--LNEISFNILCTVHQLKARDINIKFLWIPSHCGIVENERVDQAAKNSI 175 (315)
Q Consensus 120 l~~l~~~~~--~~~~~~~i~~~~~~l~~~~~~v~~~WVpgH~g~~gNe~AD~lAk~a~ 175 (315)
+++++++.. ..++.+++.. .+ ..+..|.|.|||||+|++|||.||+||++|+
T Consensus 502 ~~~i~~~~~~~~~~l~~~~~~---~~-~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 502 MGIVASQPTESESKIVNQIIE---EM-IKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp HHHHHTCCSEESCHHHHHHHH---HH-HHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred HHHHhcccccccHHHHHHHHH---Hh-ccCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 999998542 2355554442 22 2367899999999999999999999999874
No 14
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.78 E-value=2.1e-19 Score=177.59 Aligned_cols=116 Identities=24% Similarity=0.287 Sum_probs=87.8
Q ss_pred CCceEEEEcCCCCCC--CeeEEEE-ECCeeeEEecCCCCcHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEeCCHHHH
Q psy10247 44 LDSLFIFTDGTKTAT--NTGFAYV-SGDLCQTYRLNPLSSIFTAESLAILKCLEYIMSLVIVDNFNFRSVIICSDSRSSL 120 (315)
Q Consensus 44 ~~~~~iytDGS~~~~--~~G~a~v-~~~~~~~~~l~~~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~sDS~~al 120 (315)
++.+.||||||+..+ .+|+|++ ..+....... ..+||+.||+.|++.||+.+ ...+.|+|||++|+
T Consensus 437 ~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~~~-~~~TNn~aEl~Ai~~aL~~~----------~~~v~I~tDS~~vi 505 (557)
T 2zd1_A 437 VGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPL-TNTTNQKTELQAIYLALQDS----------GLEVNIVTDSQYAL 505 (557)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-CSCCHHHHHHHHHHHHHHHS----------CSEEEEEECCHHHH
T ss_pred CCCEEEEEccCCCCCCCceEEEEEEECCcEEEecC-CCCCHHHHHHHHHHHHHHhC----------CCcEEEEeChHHHH
Confidence 467999999998743 3778877 2222222333 47899999999999999987 46899999999999
Q ss_pred HHHhccccc--cHHHHHHHHHHHHHhhcCCcEEEEEeCCCCCCchhhhhcHHHHHh
Q psy10247 121 EALRTQFTL--NEISFNILCTVHQLKARDINIKFLWIPSHCGIVENERVDQAAKNS 174 (315)
Q Consensus 121 ~~l~~~~~~--~~~~~~i~~~~~~l~~~~~~v~~~WVpgH~g~~gNe~AD~lAk~a 174 (315)
++++++... .++.+++. +.+.. ..+|.|.|||||+|++|||.||+||++|
T Consensus 506 ~~i~~~~~~~~~~l~~~~~---~~l~~-~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 506 GIIQAQPDKSESELVNQII---EQLIK-KEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp HHHTTCCSEESSHHHHHHH---HHHHH-CSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred HHHhcCCccCCHHHHHHHH---HHHhc-CCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 999986554 35555544 23333 4689999999999999999999999986
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.43 E-value=5.7e-14 Score=113.94 Aligned_cols=117 Identities=14% Similarity=0.036 Sum_probs=82.7
Q ss_pred CCCceEEEEcCCCCC--CCeeEEEE---ECCeee-EEecCCCCcHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEeCC
Q psy10247 43 NLDSLFIFTDGTKTA--TNTGFAYV---SGDLCQ-TYRLNPLSSIFTAESLAILKCLEYIMSLVIVDNFNFRSVIICSDS 116 (315)
Q Consensus 43 ~~~~~~iytDGS~~~--~~~G~a~v---~~~~~~-~~~l~~~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~sDS 116 (315)
++..+.||||||+.. +.+|+|+| ++.... +..++ .+||+.||++|++.||+.+.. ... .|.|+|||
T Consensus 8 ~~~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~-~~TNN~aEl~A~i~aL~~~~~------~~~-~v~i~tDS 79 (142)
T 1zbf_A 8 EIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKE------RNS-RKPIYSNS 79 (142)
T ss_dssp CCCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEE-EECHHHHHHHHHHHHHHHHHH------TTC-CCCEEESC
T ss_pred CCCeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccC-CcCcHHHHHHHHHHHHHHHHh------CCC-eEEEEEeh
Confidence 456789999999874 45789988 222221 11222 579999999999999999954 233 89999999
Q ss_pred HHHHHHHhccccc-c--------HHHHHHHHHHHHHhhcCCcEEEEEeCCCCCCchhhhhcH
Q psy10247 117 RSSLEALRTQFTL-N--------EISFNILCTVHQLKARDINIKFLWIPSHCGIVENERVDQ 169 (315)
Q Consensus 117 ~~al~~l~~~~~~-~--------~~~~~i~~~~~~l~~~~~~v~~~WVpgH~g~~gNe~AD~ 169 (315)
++|++.+++.+.. + ++.+.|.....-+.. ..+....|+-|++.-||..||.
T Consensus 80 ~~vi~w~~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~--~~~~~~~~kw~~~~~ge~pad~ 139 (142)
T 1zbf_A 80 QTAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNT--HTYETPILKWQTDKWGEIKADY 139 (142)
T ss_dssp HHHHHHHHHTCCCCCCCCSTTTHHHHHHHHHHHHHHHH--CCCCCCEEECCHHHHCSCTTCC
T ss_pred HHHHHHHHcCCccCCCCCCcccHHHHHHHHHHHHHHhh--CCCceeEEEeccCccCcCcccc
Confidence 9999999987731 1 244444433333443 4556667888888899999983
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.23 E-value=1.6e-11 Score=97.83 Aligned_cols=75 Identities=19% Similarity=0.211 Sum_probs=55.6
Q ss_pred CCceEEEEcCCCCC--CCeeEEEE--E-CCe-eeEEecCCCCcHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEeCCH
Q psy10247 44 LDSLFIFTDGTKTA--TNTGFAYV--S-GDL-CQTYRLNPLSSIFTAESLAILKCLEYIMSLVIVDNFNFRSVIICSDSR 117 (315)
Q Consensus 44 ~~~~~iytDGS~~~--~~~G~a~v--~-~~~-~~~~~l~~~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~sDS~ 117 (315)
+....||||||+.. +..|+|+| . +.. .....+ ..+||+.||++|++.||+.+.+ ... .+.|+|||+
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~-~~tTNN~aEl~A~i~aL~~l~~------~~~-~v~i~tDSq 74 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRYLKE------RNS-RKPIYSNSQ 74 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEE-EEECHHHHHHHHHHHHHHHHHH------TTC-CCCEEESCH
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCC-CCCchHHHHHHHHHHHHHHHHh------CCC-CEEEEcchH
Confidence 56778999999874 34788544 3 222 222233 3789999999999999999954 122 389999999
Q ss_pred HHHHHHhcc
Q psy10247 118 SSLEALRTQ 126 (315)
Q Consensus 118 ~al~~l~~~ 126 (315)
+|++.+.+.
T Consensus 75 yVi~wi~~~ 83 (134)
T 4htu_A 75 TAIKWVKDK 83 (134)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHcC
Confidence 999999874
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=79.71 E-value=0.32 Score=46.02 Aligned_cols=73 Identities=10% Similarity=-0.022 Sum_probs=45.6
Q ss_pred CceEEEEcCCCCCCCeeEEEE-EC--C-e----eeEEecC---CCCcHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEE
Q psy10247 45 DSLFIFTDGTKTATNTGFAYV-SG--D-L----CQTYRLN---PLSSIFTAESLAILKCLEYIMSLVIVDNFNFRSVIIC 113 (315)
Q Consensus 45 ~~~~iytDGS~~~~~~G~a~v-~~--~-~----~~~~~l~---~~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~ 113 (315)
..+.+|||+|.. ++| |++ .. + . ..+..+. ..-++++.|++||..|++..... .....++|+
T Consensus 345 ~~~~l~~DAS~~--~~g-avL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~y-----l~g~~~~v~ 416 (455)
T 1rw3_A 345 KPFELFVDEKQG--YAK-GVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKL-----TMGQPLVIK 416 (455)
T ss_dssp CTTSCEEEEEEC--SSS-BEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGG-----GCSSCEEEE
T ss_pred CcEEEEEeccCC--cce-eEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHH-----cCCCcEEEE
Confidence 456889999853 233 234 11 1 1 1112222 23467889999999999988542 234689999
Q ss_pred eCCHHHHHHHhcc
Q psy10247 114 SDSRSSLEALRTQ 126 (315)
Q Consensus 114 sDS~~al~~l~~~ 126 (315)
||+. ++..+.+.
T Consensus 417 tDh~-~~~~l~~~ 428 (455)
T 1rw3_A 417 APHA-VEALVKQP 428 (455)
T ss_dssp CSSC-TTTTSSST
T ss_pred ecCh-HHHHhCCC
Confidence 9996 66555554
No 18
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=74.25 E-value=6.3 Score=36.85 Aligned_cols=86 Identities=7% Similarity=-0.040 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHhh-----------CCCceEEEEcCCCCCCCeeEEEE--EC--CeeeEEec--CCCCcHhHHHHHH-HH
Q psy10247 29 PQQARNSFLEFKSQ-----------NLDSLFIFTDGTKTATNTGFAYV--SG--DLCQTYRL--NPLSSIFTAESLA-IL 90 (315)
Q Consensus 29 ~~~~~~~~~~~~~~-----------~~~~~~iytDGS~~~~~~G~a~v--~~--~~~~~~~l--~~~~s~~~aEl~A-i~ 90 (315)
.+++++.|+++... ....+.++||+|.. | ++|++ .+ ....+.++ ......++-|++| |+
T Consensus 296 t~~~~~af~~lK~~L~~~p~l~~pd~~~~~~l~~das~~--g-~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv 372 (428)
T 2zd1_B 296 TEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQ--G-QWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAV 372 (428)
T ss_dssp CHHHHHHHHHHHHHTTSCCTTCCCCTTSCCEEEEEEEET--T-EEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcchhccccCCCCCEEEEEecCCC--C-cEEEEEecCCCceeeecccchhhhcccchHHHHHHHH
Confidence 36677777765442 23458899999953 1 23444 22 22222233 2233456677777 99
Q ss_pred HHHHHHHHhhhhccCCcceEEEEeCCHHH
Q psy10247 91 KCLEYIMSLVIVDNFNFRSVIICSDSRSS 119 (315)
Q Consensus 91 ~aL~~~~~~~~~~~~~~~~i~I~sDS~~a 119 (315)
.||+..... ..+..+..++++||++..
T Consensus 373 ~al~~~r~y--l~G~~~~~~i~~td~~~~ 399 (428)
T 2zd1_B 373 QKITTESIV--IWGKTPKFKLPIQKETWE 399 (428)
T ss_dssp HHHHHHHHH--HHSSCCEEEESSCHHHHH
T ss_pred HHhhccceE--EECCCCcEECCccHHHHH
Confidence 999865432 134445778889999753
No 19
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=63.85 E-value=3 Score=30.78 Aligned_cols=26 Identities=19% Similarity=0.301 Sum_probs=22.7
Q ss_pred CCCCCCCccccccchhccccccHHHH
Q psy10247 261 PECRTCGVVLTIKHILTQCKAYAALR 286 (315)
Q Consensus 261 p~C~~Cg~~et~~H~l~~Cp~~~~~R 286 (315)
-.|+.||+..+-.|.+-.||+.....
T Consensus 72 Y~CpiCGATGd~AHT~kYCP~~~~~~ 97 (106)
T 3alr_A 72 YKCPLCGATGAKAHTKRFCPMVDKNY 97 (106)
T ss_dssp CCCTTTCCCGGGCCCGGGCTTCGGGG
T ss_pred ccCCCCCCcCCcccceecCCCCCCcc
Confidence 58999999999999999999876543
No 20
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=33.66 E-value=60 Score=24.76 Aligned_cols=51 Identities=10% Similarity=0.070 Sum_probs=33.9
Q ss_pred CeeEEEE--ECCeeeEEecCCCCcHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEeCC
Q psy10247 59 NTGFAYV--SGDLCQTYRLNPLSSIFTAESLAILKCLEYIMSLVIVDNFNFRSVIICSDS 116 (315)
Q Consensus 59 ~~G~a~v--~~~~~~~~~l~~~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~sDS 116 (315)
.+|++++ +|.......+....-...||..||..|... .......+++++|.
T Consensus 28 ~VGAal~~~dG~i~~G~NvE~~~~t~cAE~~Ai~~A~~~-------G~~~~~~i~vv~~~ 80 (130)
T 2z3g_A 28 SVASAALSSDGRIFTGVNVYHFTGGPCAELVVLGTAAAA-------AAGNLTCIVAIGNE 80 (130)
T ss_dssp CEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHHT-------TCCCEEEEEEEETT
T ss_pred CEEEEEEecCCeEEEEeccccCCcccCHHHHHHHHHHHc-------CCCceEEEEEEECC
Confidence 4888888 555554444442233467999999988753 12357788899875
No 21
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=33.58 E-value=18 Score=27.90 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=17.4
Q ss_pred CCCCCCCCCCcccccc-chhccccccHHH
Q psy10247 258 DAPPECRTCGVVLTIK-HILTQCKAYAAL 285 (315)
Q Consensus 258 ~~~p~C~~Cg~~et~~-H~l~~Cp~~~~~ 285 (315)
..-|.||.|+.+.|-+ --++-||.-..+
T Consensus 25 ~~lP~CP~C~seytYeDg~l~vCPeC~hE 53 (138)
T 2akl_A 25 STLPPCPQCNSEYTYEDGALLVCPECAHE 53 (138)
T ss_dssp CCSCCCTTTCCCCCEECSSSEEETTTTEE
T ss_pred ccCCCCCCCCCcceEecCCeEECCccccc
Confidence 4569999999754332 245669954333
No 22
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=29.29 E-value=98 Score=24.12 Aligned_cols=52 Identities=25% Similarity=0.270 Sum_probs=35.1
Q ss_pred CeeEEEE--ECCeeeEEecCCCC--cHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEeCCH
Q psy10247 59 NTGFAYV--SGDLCQTYRLNPLS--SIFTAESLAILKCLEYIMSLVIVDNFNFRSVIICSDSR 117 (315)
Q Consensus 59 ~~G~a~v--~~~~~~~~~l~~~~--s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~sDS~ 117 (315)
.+|++++ +|.......+.... -...||..||..|...- ......+.|++|..
T Consensus 37 ~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~G-------~~~l~~i~v~~~~~ 92 (146)
T 2fr5_A 37 PVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISEG-------YKDFRAIAISSDLQ 92 (146)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-------CCCEEEEEEEESCS
T ss_pred CEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhCC-------CCceEEEEEEeCCC
Confidence 5899988 55555555444222 23579999999888542 23578999999863
No 23
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=23.60 E-value=1.6e+02 Score=22.67 Aligned_cols=53 Identities=19% Similarity=0.312 Sum_probs=34.8
Q ss_pred CeeEEEE--ECCeeeEEecCCCC--cHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEeCCH
Q psy10247 59 NTGFAYV--SGDLCQTYRLNPLS--SIFTAESLAILKCLEYIMSLVIVDNFNFRSVIICSDSR 117 (315)
Q Consensus 59 ~~G~a~v--~~~~~~~~~l~~~~--s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~sDS~ 117 (315)
.+|++++ +|.......+...+ -...||..||..|...- .......+.|.+|..
T Consensus 33 ~VGAAl~~~dG~i~~G~NvEnasy~~t~cAEr~Ai~~a~~~G------~~~~i~~i~vv~~~~ 89 (142)
T 1r5t_A 33 RVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMAG------HRSGWKCMVICGDSE 89 (142)
T ss_dssp CEEEEEECTTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT------CCSCCCEEEEEESCS
T ss_pred CEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHHcC------CCCceEEEEEEeCCC
Confidence 5899988 56555555554222 23679999999887542 221277899999863
No 24
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=23.03 E-value=1.8e+02 Score=20.29 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEeCCCCCCchhhhhcHHHHHhHhhccccCCCHHHHHHHHHHHHH
Q psy10247 133 SFNILCTVHQLKARDINIKFLWIPSHCGIVENERVDQAAKNSIYAQLLKSVVVKDVIIQSKKTIL 197 (315)
Q Consensus 133 ~~~i~~~~~~l~~~~~~v~~~WVpgH~g~~gNe~AD~lAk~a~~~~~~~~~~~~~~k~~ik~~~~ 197 (315)
.+.|+..++.+...|..+ +.+|-|-+...-||.-.++-|++.+-..+....+..+-+.+++-++
T Consensus 37 sqdirdiiksmkdngkpl-vvfvngasqndvnefqneakkegvsydvlkstdpeeltqrvreflk 100 (112)
T 2lnd_A 37 SQDIRDIIKSMKDNGKPL-VVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVREFLK 100 (112)
T ss_dssp HHHHHHHHHHHTTCCSCE-EEEECSCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCeE-EEEecCcccccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHHHHH
Confidence 466776667777666544 4578888777778877777777665544544556666666665443
No 25
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=22.14 E-value=2.9e+02 Score=26.16 Aligned_cols=87 Identities=7% Similarity=-0.065 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHhh-----------CCCceEEEEcCCCCCCCeeEEEE--E-CCe-e--eEEecCCCCcHhHHHHHH-HH
Q psy10247 29 PQQARNSFLEFKSQ-----------NLDSLFIFTDGTKTATNTGFAYV--S-GDL-C--QTYRLNPLSSIFTAESLA-IL 90 (315)
Q Consensus 29 ~~~~~~~~~~~~~~-----------~~~~~~iytDGS~~~~~~G~a~v--~-~~~-~--~~~~l~~~~s~~~aEl~A-i~ 90 (315)
.+++++.|+++... +...+.++||+|.. | .+|++ . +.. . ..+........++-|++| ++
T Consensus 298 t~~~~~af~~lK~~L~~~p~L~~pd~~~~~~l~~das~~--g-~~g~vl~q~~~~~~~~~~~~~~~~y~~~e~e~la~vv 374 (557)
T 2zd1_A 298 TEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQ--G-QWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAV 374 (557)
T ss_dssp CHHHHHHHHHHHHHTSSCCCBCCCCTTSCCEEEEEEEET--T-EEEEEEEEETTEEEEEEEEECCSCSEECHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCccceeecCCCCCEEEEEecCCC--C-cEEEEEecCCCceeeeeecccccccCCChHHHHHHHH
Confidence 35677777776543 23457899999853 1 12443 3 221 1 222333445567789999 99
Q ss_pred HHHHHHHHhhhhccCCcceEEE-EeCCHHHHH
Q psy10247 91 KCLEYIMSLVIVDNFNFRSVII-CSDSRSSLE 121 (315)
Q Consensus 91 ~aL~~~~~~~~~~~~~~~~i~I-~sDS~~al~ 121 (315)
.+|+.....+ .+..+ .+.+ ++|++....
T Consensus 375 ~~l~~~~~~l--~g~~p-~~~vp~~~~~~~~~ 403 (557)
T 2zd1_A 375 QKITTESIVI--WGKTP-KFKLPIQKETWETW 403 (557)
T ss_dssp HHHHHHHHHH--HSSCC-EEEESBCHHHHHHH
T ss_pred HHhhhhheEE--eCCCC-CEECCCcHHHHHHH
Confidence 9987653221 22222 4445 788775443
No 26
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=22.05 E-value=1e+02 Score=24.82 Aligned_cols=50 Identities=18% Similarity=0.113 Sum_probs=27.8
Q ss_pred CeeEEEEECCeeeEEecC----CCCcHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEe
Q psy10247 59 NTGFAYVSGDLCQTYRLN----PLSSIFTAESLAILKCLEYIMSLVIVDNFNFRSVIICS 114 (315)
Q Consensus 59 ~~G~a~v~~~~~~~~~l~----~~~s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~s 114 (315)
.+|+.+|+.+...+.... ...-...||..||..|.+.. ........++|+
T Consensus 37 pVGAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~------~~~~l~g~tlYv 90 (179)
T 2nx8_A 37 PIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHE------GNWRLLDTTLFV 90 (179)
T ss_dssp CCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHH------TSSCCTTEEEEE
T ss_pred CEEEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHc------CCCcccceEEEE
Confidence 478887743332222211 01123579999999987765 222345566666
No 27
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=21.58 E-value=1.3e+02 Score=23.16 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=35.2
Q ss_pred CeeEEEE--ECCeeeEEecCCCC--cHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEeCCH
Q psy10247 59 NTGFAYV--SGDLCQTYRLNPLS--SIFTAESLAILKCLEYIMSLVIVDNFNFRSVIICSDSR 117 (315)
Q Consensus 59 ~~G~a~v--~~~~~~~~~l~~~~--s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~sDS~ 117 (315)
.+|++++ +|.......+.... ...-||..||..|...- ......|.|.+|..
T Consensus 34 ~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~G-------~~~~~aiav~~~~~ 89 (141)
T 2d30_A 34 QVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSEG-------DKEFVAIAIVADTK 89 (141)
T ss_dssp CEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-------CCCEEEEEEEESCS
T ss_pred cEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHCC-------CCceEEEEEEeCCC
Confidence 5888888 55555555554222 23679999999887532 23578899999874
No 28
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=20.81 E-value=2.2e+02 Score=21.65 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=34.3
Q ss_pred CeeEEEE--ECCeeeEEecCCCC--cHhHHHHHHHHHHHHHHHHhhhhccCCcceEEEEeCCH
Q psy10247 59 NTGFAYV--SGDLCQTYRLNPLS--SIFTAESLAILKCLEYIMSLVIVDNFNFRSVIICSDSR 117 (315)
Q Consensus 59 ~~G~a~v--~~~~~~~~~l~~~~--s~~~aEl~Ai~~aL~~~~~~~~~~~~~~~~i~I~sDS~ 117 (315)
.+|++++ +|.......+.... -...||..||..|...- ......+++++|..
T Consensus 25 ~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~G-------~~~~~~~~l~~~~~ 80 (136)
T 1uwz_A 25 QVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSEG-------DTEFQMLAVAADTP 80 (136)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHHT-------CCCEEEEEEEESCS
T ss_pred CEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHCC-------CCCeEEEEEEeCCC
Confidence 4888888 45555444443222 23679999999888642 23578899998863
Done!