BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10248
(194 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8TBE0|BAHD1_HUMAN Bromo adjacent homology domain-containing 1 protein OS=Homo sapiens
GN=BAHD1 PE=1 SV=2
Length = 780
Score = 160 bits (404), Expect = 6e-39, Method: Composition-based stats.
Identities = 84/175 (48%), Positives = 111/175 (63%), Gaps = 6/175 (3%)
Query: 23 DEHPVVRNCYPAM-RHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVS 81
+ P +R Y A+ RH G+ I+ RD +LLKSG RK P++AK+ ALWENPE GE+M+S
Sbjct: 607 EPEPAIRKSYQAVERH--GETIRVRDTVLLKSGPRKTSTPYVAKISALWENPESGELMMS 664
Query: 82 LLWYYRPEHTEQGTS---YRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMR 138
LLWYYRPEH + G S + ++E+FASRH+D NSVACIE+KCYVLT+ EYCR+ +
Sbjct: 665 LLWYYRPEHLQGGRSPSMHEPLQNEVFASRHQDQNSVACIEEKCYVLTFAEYCRFCAMAK 724
Query: 139 SIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNP 193
+ + + K + P R P P+ VF C VYDFR R+LKNP
Sbjct: 725 RRGEGLPSRKTALVPPSADYSTPPHRTVPEDTDPELVFLCRHVYDFRHGRILKNP 779
>sp|Q497V6|BAHD1_MOUSE Bromo adjacent homology domain-containing 1 protein OS=Mus musculus
GN=Bahd1 PE=2 SV=1
Length = 772
Score = 159 bits (402), Expect = 1e-38, Method: Composition-based stats.
Identities = 84/175 (48%), Positives = 111/175 (63%), Gaps = 6/175 (3%)
Query: 23 DEHPVVRNCYPAM-RHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVS 81
+ P +R Y A+ RH G+ I+ RD +LLKSG RK P++AK+ ALWENPE GE+M+S
Sbjct: 599 EPEPAIRKSYQAVERH--GETIRVRDTVLLKSGPRKTSTPYVAKISALWENPESGELMMS 656
Query: 82 LLWYYRPEHTEQGTS---YRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMR 138
LLWYYRPEH + G S + ++E+FASRH+D NSVACIE+KCYVLT+ EYCR+ +
Sbjct: 657 LLWYYRPEHLQGGRSPSMHEPLQNEVFASRHQDQNSVACIEEKCYVLTFAEYCRFCAMAK 716
Query: 139 SIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNP 193
+ + + K + P R P P+ VF C VYDFR R+LKNP
Sbjct: 717 RRGEGLPSRKTALVPPSADYSTPPHRTVPEDTDPELVFLCRHVYDFRHGRILKNP 771
>sp|Q3UHR0|BAHC1_MOUSE BAH and coiled-coil domain-containing protein 1 OS=Mus musculus
GN=Bahcc1 PE=2 SV=2
Length = 2643
Score = 59.7 bits (143), Expect = 1e-08, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 32/144 (22%)
Query: 47 DCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFA 106
DC + S R +LP+I ++ +LWE+ M+V + W+Y PE T+ G D K+ ++
Sbjct: 2523 DCAVFLSAGRP-NLPYIGRIESLWES-WGSNMVVKVKWFYHPEETKLGKRQSDGKNALYQ 2580
Query: 107 SRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQP 166
S H D N V I KC V +G QYE+++R
Sbjct: 2581 SCHEDENDVQTISHKCQV-----------------------------VGREQYEQMMRGR 2611
Query: 167 PGQVSPDRVFYCHKVYDFRTKRLL 190
Q D ++Y YD T RL+
Sbjct: 2612 KYQDQQD-LYYLAGTYDPTTGRLV 2634
>sp|Q9P281|BAHC1_HUMAN BAH and coiled-coil domain-containing protein 1 OS=Homo sapiens
GN=BAHCC1 PE=1 SV=3
Length = 2608
Score = 58.5 bits (140), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 47 DCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFA 106
DC + S R +LP+I ++ ++WE+ M+V + W+Y PE T+ G D K+ ++
Sbjct: 2488 DCAVFLSAGRP-NLPYIGRIESMWES-WGSNMVVKVKWFYHPEETKLGKRQCDGKNALYQ 2545
Query: 107 SRHRDINSVACIEDKCYVLT---YREYCRYRK 135
S H D N V I KC V+ Y + R RK
Sbjct: 2546 SCHEDENDVQTISHKCQVVAREQYEQMARSRK 2577
>sp|Q3LHL9|WGE_DROME Protein winged eye OS=Drosophila melanogaster GN=wge PE=1 SV=1
Length = 1658
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 55 TRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINS 114
T + D P+I ++ ++WE G +V + W+Y PE T G +F S H D N
Sbjct: 1523 TGRPDRPYIGRIESMWET-TTGNKVVRVAWFYHPEET-TGCPKLKFPGALFESPHEDEND 1580
Query: 115 VACIEDKCYVLTYREYCRY----RKKMRSIEDN 143
V I +C VL + Y K+ +SI DN
Sbjct: 1581 VQTISHRCEVLQFGSYFEKFGADSKQYQSIYDN 1613
>sp|O74964|RSC1_SCHPO Chromatin structure-remodeling complex subunit rsc1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rsc1 PE=1 SV=1
Length = 803
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 4/135 (2%)
Query: 3 LQLLSRSLDPYYFKYGTSTSDEHPVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPF 62
L+L + LD +F Y T + + +N I G ++ D +L+++ P
Sbjct: 313 LRLEAGKLDSEFFNYETDSRASPQLPKNDIQPAVSIDGTLLNVGDWVLIRNPADSSK-PI 371
Query: 63 IAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIF-ASRHRDINSVACIEDK 121
++++ +W++ +D V++ WY RPE T ++E+F S +RD + V+ I +
Sbjct: 372 VSQIYRIWKS-DDDINYVTVCWYLRPEQTVHRADAVFYENEVFKTSLYRD-HPVSEIVGR 429
Query: 122 CYVLTYREYCRYRKK 136
C+V+ Y R R K
Sbjct: 430 CFVMYITRYIRGRPK 444
>sp|Q06488|RSC2_YEAST Chromatin structure-remodeling complex subunit RSC2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RSC2 PE=1 SV=1
Length = 889
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 61 PFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIED 120
P + ++ LW+ P DG+ ++ WYYRPE T K+E+ + + V+ +
Sbjct: 427 PIVGQIFRLWKTP-DGKQWLNACWYYRPEQTVHRVDRLFYKNEVMKTGQYRDHLVSNLVG 485
Query: 121 KCYVLTYREYCRYRKKMR 138
KCYV+ + Y R M+
Sbjct: 486 KCYVIHFTRYQRGNPDMK 503
>sp|O15417|TNC18_HUMAN Trinucleotide repeat-containing gene 18 protein OS=Homo sapiens
GN=TNRC18 PE=1 SV=3
Length = 2968
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 27/115 (23%)
Query: 41 DIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYR-- 98
++I+ DC + S R +LP+I ++ ++WE+ + M+V + W+Y PE T G +
Sbjct: 2817 EMIRIGDCAVFLSAGRP-NLPYIGRIQSMWESWGN-NMVVRVKWFYHPEETSPGKQFHQG 2874
Query: 99 ---DNKDE--------------------IFASRHRDINSVACIEDKCYVLTYREY 130
D K ++ S H D N V + KC V+ +Y
Sbjct: 2875 QHWDQKSSRSLPAALRVSSQRKDFMERALYQSSHVDENDVQTVSHKCLVVGLEQY 2929
>sp|Q80WC3|TNC18_MOUSE Trinucleotide repeat-containing gene 18 protein OS=Mus musculus
GN=Tnrc18 PE=1 SV=2
Length = 2878
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 27/115 (23%)
Query: 41 DIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDN 100
++I+ DC + S R +LP+I ++ ++WE+ + M+V + W+Y PE T G + +
Sbjct: 2727 EMIRIGDCAVFLSAGRP-NLPYIGRIQSMWESWGN-NMVVRVKWFYHPEETSPGKQFHEG 2784
Query: 101 KD-------------------------EIFASRHRDINSVACIEDKCYVLTYREY 130
+ ++ S H D N V + KC V+ +Y
Sbjct: 2785 QHWDQKSGHSLPAALRASSQRKDFMERALYQSSHVDENDVQTVSHKCLVVGLEQY 2839
>sp|P53236|RSC1_YEAST Chromatin structure-remodeling complex subunit RSC1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RSC1 PE=1 SV=1
Length = 928
Score = 38.1 bits (87), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 61 PFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIED 120
P + ++ LW DG ++ WY+RPE T K+E+ + + + I+
Sbjct: 387 PIVGQIFRLWST-TDGNKWLNACWYFRPEQTVHRVDRLFYKNEVMKTGQYRDHPIQDIKG 445
Query: 121 KCYVLTYREYCR 132
KCYV+ + + R
Sbjct: 446 KCYVIHFTRFQR 457
>sp|Q90941|PB1_CHICK Protein polybromo-1 OS=Gallus gallus GN=PBRM1 PE=1 SV=1
Length = 1633
Score = 37.0 bits (84), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 47 DCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFA 106
DC+ +KS + P + ++ +W DG + PE TE + K E+F
Sbjct: 1161 DCVFIKSHGLVR--PRVGRIEKMW--VRDGAAYFFGPIFIHPEETEHEPTKMFYKKEVFL 1216
Query: 107 SRHRDINSVACIEDKCYVLTYREY--CR 132
S + ++CI KC VL+++++ CR
Sbjct: 1217 SNLEETCPMSCILGKCAVLSFKDFLCCR 1244
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 61 PFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIED 120
P I + LWE+ GE + W+YRP T + + + E+F S + + V+ I
Sbjct: 973 PHIVCIERLWEDSA-GEKWLYGCWFYRPNETFHLATRKFLEKEVFKSDYYNKVPVSKILG 1031
Query: 121 KCYVLTYREYCR 132
KC V+ +EY +
Sbjct: 1032 KCVVMFVKEYFK 1043
>sp|Q8BSQ9|PB1_MOUSE Protein polybromo-1 OS=Mus musculus GN=Pbrm1 PE=1 SV=4
Length = 1634
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 47 DCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFA 106
DC+ +KS + P + ++ +W DG + PE TE + K E+F
Sbjct: 1162 DCVFIKSHGLVR--PRVGRIEKVW--VRDGAAYFYGPIFIHPEETEHEPTKMFYKKEVFL 1217
Query: 107 SRHRDINSVACIEDKCYVLTYREY--CR 132
S + ++CI KC VL+++++ CR
Sbjct: 1218 SNLEETCPMSCILGKCAVLSFKDFLSCR 1245
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 61 PFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIED 120
P I + LWE+ GE + W+YRP T + + + E+F S + + V+ I
Sbjct: 975 PHIVCIERLWEDSA-GEKWLYGCWFYRPNETFHLATRKFLEKEVFKSDYYNKVPVSKILG 1033
Query: 121 KCYVLTYREYCR 132
KC V+ +EY +
Sbjct: 1034 KCVVMFVKEYFK 1045
>sp|Q86U86|PB1_HUMAN Protein polybromo-1 OS=Homo sapiens GN=PBRM1 PE=1 SV=1
Length = 1689
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 61 PFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIED 120
P I + LWE+ GE + W+YRP T + + + E+F S + + V+ I
Sbjct: 975 PHIVCIERLWEDSA-GEKWLYGCWFYRPNETFHLATRKFLEKEVFKSDYYNKVPVSKILG 1033
Query: 121 KCYVLTYREYCR 132
KC V+ +EY +
Sbjct: 1034 KCVVMFVKEYFK 1045
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 47 DCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFA 106
DC+ +KS + P + ++ +W DG + PE TE + K E+F
Sbjct: 1162 DCVFIKSHGLVR--PRVGRIEKVW--VRDGAAYFYGPIFIHPEETEHEPTKMFYKKEVFL 1217
Query: 107 SRHRDINSVACIEDKCYVLTYREY--CR 132
S + + CI KC VL+++++ CR
Sbjct: 1218 SNLEETCPMTCILGKCAVLSFKDFLSCR 1245
>sp|Q10077|SNT2_SCHPO Lid2 complex component snt2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=snt2 PE=4 SV=1
Length = 1131
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Query: 39 QGDIIQPRDCILLKSGTRKKDLPF-IAKVGALWEN----PEDGEMMVSLLWYYRPEHTEQ 93
G++IQP D +L+ S + PF IA++ + ++ + V L WY+RP ++
Sbjct: 101 NGELIQPNDFVLVNSPFPGE--PFQIARIISFEKSRPCVSTNLYDSVRLNWYFRPRDIQR 158
Query: 94 GTSYRDNKDEIFASRHRDINSVACIEDKCYV 124
+ + +FAS H DI ++ +++KC V
Sbjct: 159 ---HLTDTRLLFASMHSDIYNIGSVQEKCTV 186
>sp|Q9NR48|ASH1L_HUMAN Histone-lysine N-methyltransferase ASH1L OS=Homo sapiens GN=ASH1L
PE=1 SV=2
Length = 2969
Score = 34.7 bits (78), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 46/124 (37%), Gaps = 20/124 (16%)
Query: 13 YYFKYGTSTSDEHPVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWEN 72
Y + T D HPV R Y + HI D + I ++ LW+N
Sbjct: 2670 YLMRDSRRTPDGHPV-RQSYRLLSHINRDKLD------------------IFRIEKLWKN 2710
Query: 73 PEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCR 132
E E Y+RP T S R +E+F +I + + C VL YC+
Sbjct: 2711 -EKEERFAFGHHYFRPHETHHSPSRRFYHNELFRVPLYEIIPLEAVVGTCCVLDLYTYCK 2769
Query: 133 YRKK 136
R K
Sbjct: 2770 GRPK 2773
>sp|Q99MY8|ASH1L_MOUSE Histone-lysine N-methyltransferase ASH1L OS=Mus musculus GN=Ash1l
PE=1 SV=3
Length = 2958
Score = 34.7 bits (78), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 46/124 (37%), Gaps = 20/124 (16%)
Query: 13 YYFKYGTSTSDEHPVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWEN 72
Y + T D HPV R Y + HI D + I ++ LW+N
Sbjct: 2659 YLMRDSRRTPDGHPV-RQSYRLLSHINRDKLD------------------IFRIEKLWKN 2699
Query: 73 PEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCR 132
E E Y+RP T S R +E+F +I + + C VL YC+
Sbjct: 2700 -EKEERFAFGHHYFRPHETHHSPSRRFYHNELFRVPLYEIIPLEAVVGTCCVLDLYTYCK 2758
Query: 133 YRKK 136
R K
Sbjct: 2759 GRPK 2762
>sp|O49139|CMT1_ARATH Putative DNA (cytosine-5)-methyltransferase CMT1 OS=Arabidopsis
thaliana GN=CMT1 PE=5 SV=2
Length = 791
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 60 LPFIAKVGALWENPEDGEMMVSLLWYYRPEHTE-QGTSYRDNKDEIFASRHRDINSVACI 118
L FIAKV L+E +DG WYYRPE T + S+ +F S + N + CI
Sbjct: 96 LKFIAKVIELFE-ADDGVPYCRFRWYYRPEDTLIERFSHLVQPKRVFLSNDENDNPLTCI 154
Query: 119 EDKCYV 124
K +
Sbjct: 155 WSKVNI 160
>sp|Q94F88|CMT3_ARATH DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana
GN=CMT3 PE=1 SV=2
Length = 839
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 42 IIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHT-EQGTSYRDN 100
I + D ++SG K PFI K+ ++E +G++ + W+YRP T +
Sbjct: 109 IYELNDDAYVQSGEGKD--PFICKIIEMFEGA-NGKLYFTARWFYRPSDTVMKEFEILIK 165
Query: 101 KDEIFASRHRDINSVACIEDKCYVL 125
K +F S +D N + +E K +L
Sbjct: 166 KKRVFFSEIQDTNELGLLEKKLNIL 190
>sp|Q5ZJ69|ARI5B_CHICK AT-rich interactive domain-containing protein 5B OS=Gallus gallus
GN=ARID5B PE=2 SV=1
Length = 1185
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 63 IAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFA 106
IA++ LWE +++ S Y+ PE T QG + +DE+ A
Sbjct: 56 IAELQLLWEERTSRQLLSSAKLYFLPEDTPQGRTSDHGEDEVIA 99
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 124 VLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYD 183
+L+Y +YCRYR ++ I+D + L G + P ++FYC +D
Sbjct: 180 ILSYPQYCRYRSMLKRIQDKPSSILTDQFVLALGGIAVTSKNP-------QIFYCRDTFD 232
Query: 184 FRT 186
T
Sbjct: 233 HPT 235
>sp|Q14865|ARI5B_HUMAN AT-rich interactive domain-containing protein 5B OS=Homo sapiens
GN=ARID5B PE=1 SV=3
Length = 1188
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 119 EDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYC 178
E VL+Y +YCRYR ++ I+D + L G + R P ++ YC
Sbjct: 173 ETNVIVLSYPQYCRYRSMLKRIQDKPSSILTDQFALALGGIAVVSRNP-------QILYC 225
Query: 179 HKVYDFRT 186
+D T
Sbjct: 226 RDTFDHPT 233
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 58 KDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDI 112
KD IA++ LWE +++ S Y+ PE T QG + +DE+ A + I
Sbjct: 49 KDPICIAELQLLWEERTSRQLLSSSKLYFLPEDTPQGRNSDHGEDEVIAVSEKVI 103
>sp|Q97BD7|RIFK_THEVO Riboflavin kinase OS=Thermoplasma volcanium (strain ATCC 51530 /
DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=ribK PE=3
SV=1
Length = 220
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 117 CIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQY 159
I +K L Y E+ ++ SI+ N+V I+VP +GEG+Y
Sbjct: 67 TITEKGLDLLYTEFAEL-SRILSIKSNIVMTGIVVPGMGEGKY 108
>sp|A6RDW5|JIP5_AJECN WD repeat-containing protein JIP5 OS=Ajellomyces capsulata (strain
NAm1 / WU24) GN=JIP5 PE=3 SV=1
Length = 413
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 136 KMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPG---QVSPDRVFYC 178
K E VVN KI VP LGEG ++R+ PP +SP+ +
Sbjct: 93 KAAKAETGVVNLKIAVPRLGEGTHDRI--DPPTVIHAISPETIILS 136
>sp|E1BLP6|ARI5B_BOVIN AT-rich interactive domain-containing protein 5B OS=Bos taurus
GN=ARID5B PE=3 SV=1
Length = 1173
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 58 KDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDI 112
KD IA++ LWE +++ S Y+ PE T QG + +DE+ A + I
Sbjct: 49 KDPICIAELQLLWEERTSRQLLSSSKLYFLPEDTPQGRNSDHGEDEVIAVSEKVI 103
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 119 EDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYC 178
E VL+Y +YCRYR ++ I+D + L G + + P ++ YC
Sbjct: 176 ETNVIVLSYPQYCRYRSMLKRIQDKPSSILTDQFALALGGIAVVSKNP-------QILYC 228
Query: 179 HKVYDFRT 186
+D T
Sbjct: 229 RDTFDHPT 236
>sp|Q8BM75|ARI5B_MOUSE AT-rich interactive domain-containing protein 5B OS=Mus musculus
GN=Arid5b PE=1 SV=3
Length = 1188
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 58 KDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDI 112
KD IA++ LWE +++ S Y+ PE T QG + +DE+ A + I
Sbjct: 49 KDPICIAELQLLWEERTSRQLLSSSKLYFLPEDTPQGRNSDHGEDEVIAVSEKVI 103
Score = 32.0 bits (71), Expect = 2.4, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 119 EDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYC 178
E VL+Y +YCRYR ++ I+D + L G + R P ++ YC
Sbjct: 173 ETNVIVLSYPQYCRYRSMLKRIQDKPSSILTDQFALALGGIAVVSRNP-------QILYC 225
Query: 179 HKVYDFRT 186
+D T
Sbjct: 226 RDTFDHPT 233
>sp|E2R9X2|ARI5B_CANFA AT-rich interactive domain-containing protein 5B OS=Canis
familiaris GN=ARID5B PE=3 SV=1
Length = 1187
Score = 32.0 bits (71), Expect = 2.4, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 58 KDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDI 112
KD IA++ LWE +++ S Y+ PE T QG + +DE+ A + I
Sbjct: 49 KDPICIAELQLLWEERTSRQLLSSSKLYFLPEDTPQGRNSDHGEDEVIAVSEKVI 103
Score = 30.0 bits (66), Expect = 9.6, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 119 EDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYC 178
E VL+Y +YCRYR ++ I+D + L G + + P ++ YC
Sbjct: 173 ETNVIVLSYPQYCRYRSMLKRIQDKPPSILTDQFALALGGIAVVSKNP-------QILYC 225
Query: 179 HKVYDFRT 186
+D T
Sbjct: 226 RDTFDHPT 233
>sp|Q0W2J3|PRIL_UNCMA Probable DNA primase large subunit OS=Uncultured methanogenic
archaeon RC-I GN=priB PE=3 SV=1
Length = 366
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 99 DNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIV 151
D D RD A +D+ +++ + +Y RY +R++E ++N K++
Sbjct: 103 DESDTGLMDVGRDFGITARAKDREFIIHFTDYLRYAAGLRNLEWKLINRKVVA 155
>sp|Q15386|UBE3C_HUMAN Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UBE3C PE=1 SV=3
Length = 1083
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 137 MRSIEDNV----VNFKIIVPPLGEGQYERLLRQPPGQ----VSPDRVFYCHKVYDFRTKR 188
++S ED+V +NF ++ LGE Q L + G+ S +R+ Y H V D+R R
Sbjct: 873 LKSYEDDVEELGLNFTVVNNDLGEAQVVEL--KFGGKDIPVTSANRIAYIHLVADYRLNR 930
Query: 189 LLKNPC 194
++ C
Sbjct: 931 QIRQHC 936
>sp|Q8VIJ8|NPRL3_MOUSE Nitrogen permease regulator 3-like protein OS=Mus musculus GN=Nprl3
PE=2 SV=1
Length = 569
Score = 30.0 bits (66), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 11/101 (10%)
Query: 8 RSLD-PYYFKYGTSTSDEHPVVRNCYPAMRHIQGDIIQPRDCIL-------LKSGTRKKD 59
RSL P +G+ TS + + + P+M + +++ D L L + + +
Sbjct: 437 RSLSTPNALSFGSPTSSDDMTLTS--PSMDNSSAELLPSGDSPLNKRMTENLLASLSEHE 494
Query: 60 LPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDN 100
I V A +NPED M LL Y+R H + Y +N
Sbjct: 495 RAAILNVPA-AQNPEDLRMFARLLHYFRGRHHLEEIMYNEN 534
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.141 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,858,836
Number of Sequences: 539616
Number of extensions: 3274847
Number of successful extensions: 5856
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 5815
Number of HSP's gapped (non-prelim): 38
length of query: 194
length of database: 191,569,459
effective HSP length: 111
effective length of query: 83
effective length of database: 131,672,083
effective search space: 10928782889
effective search space used: 10928782889
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)