Query psy10248
Match_columns 194
No_of_seqs 209 out of 676
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 21:38:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10248.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10248hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04717 BAH_polybromo BAH, or 100.0 4.5E-33 9.7E-38 212.9 12.0 119 40-192 1-119 (121)
2 cd04713 BAH_plant_3 BAH, or Br 100.0 9.2E-33 2E-37 218.1 12.5 130 25-192 4-136 (146)
3 cd04714 BAH_BAHCC1 BAH, or Bro 100.0 3.1E-32 6.7E-37 208.8 10.5 119 40-189 1-119 (121)
4 cd04715 BAH_Orc1p_like BAH, or 100.0 1.2E-31 2.6E-36 214.3 12.7 144 14-185 1-153 (159)
5 cd04721 BAH_plant_1 BAH, or Br 100.0 5E-31 1.1E-35 204.6 11.5 115 38-186 3-118 (130)
6 cd04716 BAH_plantDCM_I BAH, or 100.0 4.4E-30 9.5E-35 197.3 10.7 121 40-194 1-122 (122)
7 PF01426 BAH: BAH domain; Int 100.0 9.2E-30 2E-34 191.6 11.2 118 41-193 1-119 (119)
8 cd04370 BAH BAH, or Bromo Adja 100.0 1.7E-29 3.7E-34 189.9 11.4 121 40-192 1-122 (123)
9 cd04709 BAH_MTA BAH, or Bromo 100.0 4.8E-29 1E-33 200.2 12.3 116 41-192 2-139 (164)
10 smart00439 BAH Bromo adjacent 100.0 5.9E-29 1.3E-33 187.2 11.6 119 42-193 1-120 (120)
11 cd04710 BAH_fungalPHD BAH, or 99.9 9E-27 1.9E-31 181.8 11.4 116 38-189 7-133 (135)
12 cd04720 BAH_Orc1p_Yeast BAH, o 99.9 2.6E-26 5.7E-31 186.9 12.1 117 39-189 49-174 (179)
13 cd04708 BAH_plantDCM_II BAH, o 99.9 4.2E-26 9.1E-31 187.9 11.1 124 38-194 3-147 (202)
14 cd04718 BAH_plant_2 BAH, or Br 99.9 4.5E-27 9.8E-32 184.7 1.5 98 58-192 50-147 (148)
15 cd04712 BAH_DCM_I BAH, or Brom 99.9 6.9E-23 1.5E-27 159.0 12.8 114 39-193 2-129 (130)
16 cd04760 BAH_Dnmt1_I BAH, or Br 99.9 5E-23 1.1E-27 158.1 10.8 123 40-189 1-123 (124)
17 cd04719 BAH_Orc1p_animal BAH, 99.9 4.1E-22 8.9E-27 154.1 8.6 90 41-133 2-101 (128)
18 cd04711 BAH_Dnmt1_II BAH, or B 99.8 5.1E-20 1.1E-24 142.7 9.1 100 57-194 23-137 (137)
19 KOG1886|consensus 99.7 1.5E-17 3.3E-22 150.6 6.9 130 28-192 36-168 (464)
20 KOG1827|consensus 99.6 3.1E-15 6.8E-20 140.0 7.1 131 26-191 174-305 (629)
21 KOG3554|consensus 99.2 9.6E-13 2.1E-17 119.1 -2.0 116 41-192 4-163 (693)
22 COG5076 Transcription factor i 92.8 0.018 3.9E-07 51.7 -1.5 93 38-132 272-364 (371)
23 PF09926 DUF2158: Uncharacteri 92.0 0.27 5.9E-06 32.4 3.7 42 43-90 1-42 (53)
24 PRK13251 transcription attenua 86.7 2.7 5.9E-05 29.3 5.6 48 80-127 19-66 (75)
25 COG5475 Uncharacterized small 86.6 2.9 6.3E-05 27.9 5.4 50 41-105 3-52 (60)
26 PF02081 TrpBP: Tryptophan RNA 84.5 2 4.4E-05 30.0 4.1 48 80-127 19-66 (75)
27 PTZ00112 origin recognition co 80.5 3.4 7.3E-05 42.1 5.5 66 25-91 436-522 (1164)
28 cd05835 Dnmt3b_related The PWW 79.7 2.9 6.2E-05 29.9 3.7 42 43-87 1-44 (87)
29 cd06080 MUM1_like Mutated mela 79.7 4.1 8.8E-05 29.0 4.4 39 43-88 1-39 (80)
30 cd05834 HDGF_related The PWWP 76.8 5.6 0.00012 28.3 4.4 43 42-88 2-44 (83)
31 PF09871 DUF2098: Uncharacteri 72.3 8 0.00017 28.3 4.3 42 42-92 2-47 (91)
32 smart00293 PWWP domain with co 70.8 8.5 0.00018 25.6 3.9 42 43-87 1-48 (63)
33 PF15057 DUF4537: Domain of un 70.7 11 0.00023 28.9 5.0 44 41-86 54-98 (124)
34 PF11717 Tudor-knot: RNA bindi 70.7 12 0.00027 24.2 4.6 36 43-83 1-36 (55)
35 cd05162 PWWP The PWWP domain, 69.9 8.3 0.00018 27.1 4.0 41 43-86 1-46 (87)
36 PF11302 DUF3104: Protein of u 66.2 22 0.00048 25.1 5.3 31 42-72 5-39 (75)
37 smart00739 KOW KOW (Kyprides, 63.6 14 0.00031 19.8 3.3 25 43-70 2-26 (28)
38 PF00467 KOW: KOW motif; Inte 63.0 14 0.0003 21.2 3.3 25 45-72 1-25 (32)
39 cd05840 SPBC215_ISWI_like The 60.3 12 0.00026 27.2 3.3 41 43-86 1-49 (93)
40 PF08940 DUF1918: Domain of un 58.4 16 0.00034 24.6 3.3 39 44-85 4-42 (58)
41 PRK10708 hypothetical protein; 57.7 47 0.001 22.3 5.4 45 44-92 2-53 (62)
42 PF10781 DSRB: Dextransucrase 57.6 48 0.001 22.2 5.4 46 44-93 2-54 (62)
43 KOG1568|consensus 56.9 47 0.001 27.0 6.4 102 15-125 35-147 (174)
44 PF00855 PWWP: PWWP domain; I 55.0 15 0.00033 25.3 3.0 41 43-86 1-43 (86)
45 PF10383 Clr2: Transcription-s 53.8 73 0.0016 24.7 7.0 42 31-73 2-52 (139)
46 KOG2133|consensus 48.4 16 0.00034 37.3 2.9 85 39-125 142-245 (1229)
47 cd05836 N_Pac_NP60 The PWWP do 46.8 25 0.00054 25.0 3.1 43 43-88 1-46 (86)
48 PRK12281 rplX 50S ribosomal pr 44.7 58 0.0013 22.8 4.6 28 42-72 6-33 (76)
49 CHL00141 rpl24 ribosomal prote 39.7 72 0.0016 22.7 4.5 29 41-72 7-35 (83)
50 PRK00004 rplX 50S ribosomal pr 37.7 74 0.0016 23.6 4.5 28 42-72 4-31 (105)
51 PRK01191 rpl24p 50S ribosomal 32.3 1.3E+02 0.0027 23.2 5.0 30 40-72 43-72 (120)
52 TIGR02754 sod_Ni_protease nick 31.3 1.8E+02 0.0038 20.0 5.5 12 111-122 77-88 (90)
53 TIGR01079 rplX_bact ribosomal 31.0 1.1E+02 0.0023 22.8 4.4 28 42-72 3-30 (104)
54 COG0250 NusG Transcription ant 28.1 1.4E+02 0.0031 24.2 5.1 47 40-91 121-167 (178)
55 cd05837 MSH6_like The PWWP dom 27.5 1E+02 0.0022 22.8 3.8 44 42-88 2-53 (110)
56 PF01079 Hint: Hint module; I 27.0 69 0.0015 26.8 3.1 28 42-71 105-132 (217)
57 PF09345 DUF1987: Domain of un 27.0 44 0.00095 24.6 1.7 42 47-92 50-91 (99)
58 PF03144 GTP_EFTU_D2: Elongati 26.1 1.1E+02 0.0024 20.0 3.6 32 40-72 10-41 (74)
59 COG4014 Uncharacterized protei 25.0 1.8E+02 0.0039 21.3 4.5 41 43-91 9-53 (97)
60 TIGR00922 nusG transcription t 24.5 1.8E+02 0.004 22.7 5.0 46 41-91 118-163 (172)
61 PF08921 DUF1904: Domain of un 24.0 29 0.00062 26.0 0.3 18 76-93 54-71 (108)
62 cd03703 aeIF5B_II aeIF5B_II: T 23.9 1.2E+02 0.0027 22.8 3.7 29 40-72 24-52 (110)
63 PF11132 SplA: Transcriptional 23.7 61 0.0013 22.8 1.8 26 41-68 4-29 (75)
64 TIGR00405 L26e_arch ribosomal 23.7 2.6E+02 0.0056 21.3 5.6 42 42-90 86-127 (145)
65 TIGR01956 NusG_myco NusG famil 23.4 1.9E+02 0.004 25.2 5.1 45 42-91 205-249 (258)
66 PTZ00194 60S ribosomal protein 23.0 2E+02 0.0043 22.8 4.8 30 40-72 44-73 (143)
67 cd04466 S1_YloQ_GTPase S1_YloQ 22.6 1.1E+02 0.0023 19.9 2.9 25 42-71 37-61 (68)
68 PF07154 DUF1392: Protein of u 22.2 2.7E+02 0.0059 22.1 5.4 43 39-92 84-126 (150)
69 PF09378 HAS-barrel: HAS barre 21.3 95 0.002 21.3 2.5 30 39-71 19-48 (91)
70 cd06530 S26_SPase_I The S26 Ty 21.3 1.5E+02 0.0032 20.1 3.5 28 42-70 31-58 (85)
71 smart00743 Agenet Tudor-like d 20.6 1.4E+02 0.0031 19.1 3.1 27 42-70 2-28 (61)
72 COG3257 GlxB Uncharacterized p 20.5 4.5E+02 0.0098 22.6 6.7 72 11-95 62-144 (264)
73 cd05793 S1_IF1A S1_IF1A: Trans 20.3 2E+02 0.0043 20.0 4.0 29 40-71 36-64 (77)
No 1
>cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2. The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional regulation. Saccharomyces cerevisiae RSC1 and RSC2 are part of the 15-subunit nucleosome remodeling RSC complex. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=100.00 E-value=4.5e-33 Score=212.91 Aligned_cols=119 Identities=28% Similarity=0.522 Sum_probs=106.7
Q ss_pred CEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCCCCCCCCceEEeCCccccccceec
Q psy10248 40 GDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIE 119 (194)
Q Consensus 40 g~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~~~~~~~ELF~S~~~D~~~v~~I~ 119 (194)
|.+|++||+|||.+++ .+.++|||+|.+||++. +|.++++++|||||+||.+++...+++||||+|++.|++|+++|.
T Consensus 1 g~~~~vGD~V~v~~~~-~~~~~~i~~I~~i~~~~-~g~~~~~~~Wf~rP~et~~~~~~~~~~~Evfls~~~d~~~~~~I~ 78 (121)
T cd04717 1 GLQYRVGDCVYVANPE-DPSKPIIFRIERLWKDE-DGEKFFFGCWFYRPEETFHEPTRKFYKNEVFKSPLYETVPVEEIV 78 (121)
T ss_pred CCEEECCCEEEEeCCC-CCCCCEEEEEeEEEECC-CCCEEEEEEEEeChHHccCCCccccccCceEEcCccccccHHHhc
Confidence 5789999999999987 24789999999999995 689999999999999999988889999999999999999999999
Q ss_pred ceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceecccCCceeccC
Q psy10248 120 DKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKN 192 (194)
Q Consensus 120 gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~~~~l~k~ 192 (194)
|||.||+.++|.+.++ . +...++||+||+.||..++.+.|.
T Consensus 79 ~kc~Vl~~~~y~~~~p-----------------~---------------~~~~~dvy~ce~~y~~~~~~~~~~ 119 (121)
T cd04717 79 GKCAVMDVKDYIKGRP-----------------T---------------EISEEDVYVCESRYNESAKSFKKI 119 (121)
T ss_pred CeeEEEehHHHhcCCC-----------------C---------------CCCCCCEEEEeEEECcccccEecc
Confidence 9999999999988642 1 224568999999999999998764
No 2
>cd04713 BAH_plant_3 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=100.00 E-value=9.2e-33 Score=218.12 Aligned_cols=130 Identities=25% Similarity=0.455 Sum_probs=110.4
Q ss_pred CcccccccccEEeeCCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCC---CCCCC
Q psy10248 25 HPVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTS---YRDNK 101 (194)
Q Consensus 25 ~~~~~~~Y~~~~~~dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~---~~~~~ 101 (194)
+...+.+|+++.. +|.+|++||+|||++++ ..+||||+|.+||++. ++.++|+|+|||||+||...+. ..+++
T Consensus 4 ~~~~~~~y~s~~~-dg~~y~vgD~Vlv~~~~--~~~pyI~~I~~i~~~~-~~~~~v~V~WFyRpeEi~~~~~~~~~~~~~ 79 (146)
T cd04713 4 GKKKKCHYTSFEK-DGNKYRLEDCVLLVPED--DQKPYIAIIKDIYKQE-EGSLKLEVQWLYRPEEIEKKKGGNWKAEDP 79 (146)
T ss_pred CccceeeeeeEEE-CCEEEECCCEEEEeCCC--CCCCEEEEEEEEEEcC-CCCEEEEEEeeECHHHhccccccccccCCC
Confidence 3567889999995 99999999999999986 4899999999999985 6899999999999999986432 34478
Q ss_pred CceEEeCCccccccceecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEcee
Q psy10248 102 DEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKV 181 (194)
Q Consensus 102 ~ELF~S~~~D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~ 181 (194)
||||+|.+.|.||+++|+|||+|++.+++.+ +|- ...+++||||++
T Consensus 80 ~ElF~S~~~d~~~~~~I~gkc~V~~~~~~~~------------------~~~----------------~~~~~~F~cr~~ 125 (146)
T cd04713 80 RELFYSFHRDEVPAESVLHPCKVAFVPKGKQ------------------IPL----------------RKGHSGFIVRRV 125 (146)
T ss_pred CeEEEeCCCCcCCHHHCcceeEEEECCcccc------------------CCc----------------cCCCCeEEEEEE
Confidence 9999999999999999999999998755443 121 124568999999
Q ss_pred cccCCceeccC
Q psy10248 182 YDFRTKRLLKN 192 (194)
Q Consensus 182 YD~~~~~l~k~ 192 (194)
||...+++.++
T Consensus 126 yD~~~~~~~~~ 136 (146)
T cd04713 126 YDNVNKKLWKL 136 (146)
T ss_pred EcCCCCcEeec
Confidence 99999999875
No 3
>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.98 E-value=3.1e-32 Score=208.81 Aligned_cols=119 Identities=42% Similarity=0.823 Sum_probs=104.1
Q ss_pred CEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCCCCCCCCceEEeCCccccccceec
Q psy10248 40 GDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIE 119 (194)
Q Consensus 40 g~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~~~~~~~ELF~S~~~D~~~v~~I~ 119 (194)
|++|++||+|+|++++ .+++||||+|++||++. +|+++++|+|||||+||.+++++.++++|||+|++.|++|+++|.
T Consensus 1 ~~~~~vGD~V~v~~~~-~~~~pyIgrI~~i~e~~-~g~~~~~v~WfyrPeEt~~~~~~~~~~~EvF~S~~~d~~~~~~I~ 78 (121)
T cd04714 1 KEIIRVGDCVLFKSPG-RPSLPYVARIESLWEDP-EGNMVVRVKWYYRPEETKGGRKPNHGEKELFASDHQDENSVQTIE 78 (121)
T ss_pred CCEEEcCCEEEEeCCC-CCCCCEEEEEEEEEEcC-CCCEEEEEEEEEcHHHccCcccccCCCCceEecCCcccccHHHhC
Confidence 5789999999999986 24789999999999985 689999999999999999998888999999999999999999999
Q ss_pred ceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceecccCCcee
Q psy10248 120 DKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRL 189 (194)
Q Consensus 120 gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~~~~l 189 (194)
|||+|++.++|.++++..+ . .....+||+|+..||+.+..|
T Consensus 79 gkc~V~~~~ey~~~~~~~~--------------~---------------~~~~~d~~~Ce~~yn~~~~~~ 119 (121)
T cd04714 79 HKCYVLTFAEYERLARVKK--------------K---------------PQDGVDFYYCAGTYNPDTGML 119 (121)
T ss_pred cccEEEehhHheecccccC--------------C---------------CCcCCCEEEEeccCCCCcCcc
Confidence 9999999999999764211 0 013557999999999998765
No 4
>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins. Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.97 E-value=1.2e-31 Score=214.34 Aligned_cols=144 Identities=20% Similarity=0.361 Sum_probs=117.0
Q ss_pred eeeecCCCCCCCc-ccccccccEEeeCCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecC-CCCceEEEEEEeeccCcC
Q psy10248 14 YFKYGTSTSDEHP-VVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENP-EDGEMMVSLLWYYRPEHT 91 (194)
Q Consensus 14 ~~~~g~~~~~~~~-~~~~~Y~~~~~~dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~-~~g~~~v~v~WfyRpeE~ 91 (194)
+|+||.|.+++.. ...++|+++. ++|.+|++||+|||++++ +++|||+|.+||++. +++.++++|+|||||+||
T Consensus 1 ~~~~~~~~g~~~~~~~~~~Y~s~~-~~g~~y~lGD~Vlv~s~~---~~~yIgkI~~iwe~~~~~g~~~~~v~WfyRp~E~ 76 (159)
T cd04715 1 EFKWGVKRGEGGKKKDGQFYRSFT-YDGVEYRLYDDVYVHNGD---SEPYIGKIIKIYETAIDSGKKKVKVIWFFRPSEI 76 (159)
T ss_pred CcccceecccccccCCceEEEEEE-ECCEEEeCCCEEEEeCCC---CCCEEEEEEEEEEcCCcCCceEEEEEeeeCHHHh
Confidence 4899999999985 4567999999 599999999999999865 899999999999974 138999999999999999
Q ss_pred CCCCC--CCCCCCceEEeCCc-----cccccceecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccC
Q psy10248 92 EQGTS--YRDNKDEIFASRHR-----DINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLR 164 (194)
Q Consensus 92 ~~~~~--~~~~~~ELF~S~~~-----D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~ 164 (194)
..+.. +.+++||||+|.|. ++||+++|.|||.|++.++|.+- ++. +.. .|+
T Consensus 77 ~~~~~~~~~~~~nEvFlS~~~d~~~~~~n~l~sI~gKC~Vl~~~ey~~~------~~~---s~~--~~~----------- 134 (159)
T cd04715 77 RMELKGEPKRHINEVFLACGRGEGLANINLLESIIGKCNVVCISEDFRN------PQP---SDG--IPT----------- 134 (159)
T ss_pred ccccccCcccCCCcEEEecCcCccccccCcHHHccceeEEEEehHhhhC------CCC---cCC--ccc-----------
Confidence 86432 56899999999885 66899999999999999999862 111 001 122
Q ss_pred CCCCCCCCCeEEEEceecccC
Q psy10248 165 QPPGQVSPDRVFYCHKVYDFR 185 (194)
Q Consensus 165 ~~~~~~~~~~vf~Cr~~YD~~ 185 (194)
.++..+..+|.|||+.+.+
T Consensus 135 --~~~~~f~~~f~~~~~~~~~ 153 (159)
T cd04715 135 --SADFLFPCNFDVGRCVIVD 153 (159)
T ss_pred --cCcceeeeEEEecCceecc
Confidence 1233678899999998876
No 5
>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.97 E-value=5e-31 Score=204.56 Aligned_cols=115 Identities=26% Similarity=0.437 Sum_probs=100.3
Q ss_pred eCCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCCCC-CCCCceEEeCCccccccc
Q psy10248 38 IQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYR-DNKDEIFASRHRDINSVA 116 (194)
Q Consensus 38 ~dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~~~-~~~~ELF~S~~~D~~~v~ 116 (194)
.||.+|++||+|||++++ +.+|||+|++||++. +|.++|+|+||+||+|+.++.++. +.+||||+|++.|+||++
T Consensus 3 r~~~~i~vGD~V~v~~~~---~~~~va~Ie~i~ed~-~g~~~v~v~WF~~p~E~~~~~~~~~~~~~EvFlS~~~d~i~~~ 78 (130)
T cd04721 3 RNGVTISVHDFVYVLSEE---EDRYVAYIEDLYEDK-KGSKMVKVRWFHTTDEVGAALSPDSVNPREIFLSPNLQVISVE 78 (130)
T ss_pred cCCEEEECCCEEEEeCCC---CCcEEEEEEEEEEcC-CCCEEEEEEEecCHHHhccccCCCCCCCCeEEEcCCccccchH
Confidence 389999999999999875 678999999999995 789999999999999999976656 999999999999999999
Q ss_pred eecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceecccCC
Q psy10248 117 CIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRT 186 (194)
Q Consensus 117 ~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~~ 186 (194)
||+|||+||+.++|.++.+ +++. .....+||||+.||-..
T Consensus 79 ~I~gk~~Vls~~~y~k~~~---------------~~~~---------------~~~~~~f~C~~~~d~~~ 118 (130)
T cd04721 79 CIDGLATVLTREHYEKFQS---------------VPKN---------------SSELQAYFCYRQIDNNK 118 (130)
T ss_pred HeeeeeEECCHHHHhhhhc---------------cccC---------------ccccccEEEEEEecCCC
Confidence 9999999999999999764 1221 12356899999999753
No 6
>cd04716 BAH_plantDCM_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.97 E-value=4.4e-30 Score=197.25 Aligned_cols=121 Identities=21% Similarity=0.345 Sum_probs=103.5
Q ss_pred CEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCC-CCCCCCCceEEeCCcccccccee
Q psy10248 40 GDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGT-SYRDNKDEIFASRHRDINSVACI 118 (194)
Q Consensus 40 g~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~-~~~~~~~ELF~S~~~D~~~v~~I 118 (194)
|.+|++||+|+|.+++ ..++|||||++||++. +|..+++|+|||||+||..++ ...++++|||+|++.|+||++||
T Consensus 1 g~~~~lgD~V~v~~~~--~~~~yi~rI~~i~e~~-~g~~~~~v~WyyRpeet~~~r~~~~~~~rEvFlS~~~D~~pl~~I 77 (122)
T cd04716 1 GITYNLGDDAYVQGGE--GEEPFICKITEFFEGT-DGKTYFTAQWFYRAEDTVIERQATNHDKKRVFYSEIKNDNPLDCL 77 (122)
T ss_pred CcEEEcCCEEEEECCC--CCCCEEEEEEEEEEcC-CCceEEEEEEEEcHHHhccccccccCCCceEEEecccCccchhhe
Confidence 6789999999999997 4899999999999984 788999999999999999887 56788999999999999999999
Q ss_pred cceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceecccCCceeccCCC
Q psy10248 119 EDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNPC 194 (194)
Q Consensus 119 ~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~~~~l~k~p~ 194 (194)
.|||+|++.+++..... . .....+..|||+..|+....+...+|+
T Consensus 78 ~~Kc~V~~~~~~~~~~~------------------~-------------~~~~~~~df~c~~~Y~~~~~tF~~~~~ 122 (122)
T cd04716 78 ISKVKILQVPPNVGTKR------------------K-------------KPNSEKCDYYYDMEYCVPYSTFQTLRN 122 (122)
T ss_pred eeeeEEEEeCCCCCccc------------------c-------------cccCCCceEEEeeEeccchhheEeCCC
Confidence 99999999866544210 0 011345789999999999999988885
No 7
>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation. The BAH domain appears to act as a protein-protein interaction module specialised in gene silencing, as suggested for example by its interaction within yeast Orc1p with the silent information regulator Sir1p. The BAH module might therefore play an important role by linking DNA methylation, replication and transcriptional regulation [].; GO: 0003677 DNA binding; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 3SWR_A 3PTA_A 1M4Z_A 1ZBX_A ....
Probab=99.96 E-value=9.2e-30 Score=191.56 Aligned_cols=118 Identities=31% Similarity=0.568 Sum_probs=99.2
Q ss_pred EEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCC-ceEEEEEEeeccCcCCCCCCCCCCCCceEEeCCccccccceec
Q psy10248 41 DIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDG-EMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIE 119 (194)
Q Consensus 41 ~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g-~~~v~v~WfyRpeE~~~~~~~~~~~~ELF~S~~~D~~~v~~I~ 119 (194)
++|++||+|||++++ ...+++||+|.+||++.+++ ..+++|+|||||+|| .......+||||+|++.|.+|+++|.
T Consensus 1 ~~~~vGD~V~v~~~~-~~~~~~v~~I~~i~~~~~~~~~~~~~v~Wf~rp~d~--~~~~~~~~~Elf~s~~~~~~~~~~I~ 77 (119)
T PF01426_consen 1 VTYKVGDFVYVKPDD-PPEPPYVARIEEIWEDKDGNKEKMVKVRWFYRPEDT--SLGKTFSPRELFLSDHCDDIPVESIR 77 (119)
T ss_dssp EEEETTSEEEEECTS-TTSEEEEEEEEEEEEETTTSEEEEEEEEEEEEGGGS--TTGGHSCTTEEEEEEEEEEEEGGGEE
T ss_pred CEEeCCCEEEEeCCC-CCCCCEEEEEEEEEcCCCCCEEEEEEEEEeECcccc--cccccCCCCEEEEECcEeEEehhhEE
Confidence 479999999999987 46899999999999996433 499999999999999 33344566999999999999999999
Q ss_pred ceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceecccCCceeccCC
Q psy10248 120 DKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNP 193 (194)
Q Consensus 120 gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~~~~l~k~p 193 (194)
|||.|++.++|.+..+... . .+++||||+.||+.++++.++|
T Consensus 78 gkc~V~~~~~~~~~~~~~~-------------------------------~-~~~~F~cr~~yd~~~~~f~~~~ 119 (119)
T PF01426_consen 78 GKCNVLHLEDYEQARPYGK-------------------------------E-EPDTFFCRYAYDPQKKRFKKLP 119 (119)
T ss_dssp EEEEEEEHHHHTTGCCHCH-------------------------------H-TTTEEEEEEEEETTTTEEEE-S
T ss_pred eeeEEEECCcccccccccc-------------------------------C-CCCEEEEEEEEeCCcCEEeCCC
Confidence 9999999999988543100 1 4578999999999999999887
No 8
>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.
Probab=99.96 E-value=1.7e-29 Score=189.85 Aligned_cols=121 Identities=32% Similarity=0.561 Sum_probs=104.8
Q ss_pred CEEEecCCEEEEEcCCC-CCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCCCCCCCCceEEeCCcccccccee
Q psy10248 40 GDIIQPRDCILLKSGTR-KKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACI 118 (194)
Q Consensus 40 g~~~~vGD~Vlv~~~~~-~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~~~~~~~ELF~S~~~D~~~v~~I 118 (194)
|.+|++||+|+|++++. ..+++|||+|.+||++. ++.++++|+|||||+||..+....+++||||+|++.|++++++|
T Consensus 1 g~~y~vgd~V~v~~~~~~~~~~~~i~~I~~i~~~~-~~~~~~~v~wf~rp~e~~~~~~~~~~~~Elf~s~~~~~i~v~~I 79 (123)
T cd04370 1 GITYEVGDSVYVEPDDSIKSDPPYIARIEELWEDT-NGSKQVKVRWFYRPEETPKGLSPFALRRELFLSDHLDEIPVESI 79 (123)
T ss_pred CCEEecCCEEEEecCCcCCCCCCEEEEEeeeeECC-CCCEEEEEEEEEchhHhccccccccccceeEEecCccccCHHHh
Confidence 57899999999999861 13789999999999985 68999999999999999998877899999999999999999999
Q ss_pred cceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceecccCCceeccC
Q psy10248 119 EDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKN 192 (194)
Q Consensus 119 ~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~~~~l~k~ 192 (194)
.|||.|++.++|.+..+ +. ....+++||||++||..+++.++.
T Consensus 80 ~gkc~V~~~~~~~~~~~----------------~~---------------~~~~~~~f~~r~~yd~~~~~fk~~ 122 (123)
T cd04370 80 IGKCKVLFVSEFEGLKQ----------------RP---------------NKIDTDDFFCRLAYDPTTKEFKAL 122 (123)
T ss_pred ccccEEEechHhhcccc----------------cc---------------ccCCCCeEEEEEEECcCcceEEeC
Confidence 99999999999987542 00 114457899999999999988764
No 9
>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.96 E-value=4.8e-29 Score=200.17 Aligned_cols=116 Identities=21% Similarity=0.352 Sum_probs=99.7
Q ss_pred EEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCC----------------------CCC
Q psy10248 41 DIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGT----------------------SYR 98 (194)
Q Consensus 41 ~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~----------------------~~~ 98 (194)
.+|++||+|||.+++ +.+++|++|++||++. ++..+|+|+|||||+||+... +..
T Consensus 2 ~~yrvGD~Vy~~~~~--~~Py~I~rI~e~~~~~-~~~~~vkV~wfYRp~DI~~~~~~l~~~~r~~~~~~~~~~~~~~~~~ 78 (164)
T cd04709 2 NMYRVGDYVYFESSP--NNPYLIRRIEELNKTA-RGHVEAKVVCYYRRRDIPDSLYQLADQHRRELEEKSDDLTPKQRHQ 78 (164)
T ss_pred cEEecCCEEEEECCC--CCCCEEEEEEEEEeCC-CCCEEEEEEEEEChhHccchhhhhcccccccccccccccchhhhhc
Confidence 579999999999985 5678899999999985 789999999999999996531 234
Q ss_pred CCCCceEEeCCccccccceecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEE
Q psy10248 99 DNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYC 178 (194)
Q Consensus 99 ~~~~ELF~S~~~D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~C 178 (194)
++.+|||+|+|.|.+|+++|.|||.|+..++|.++.. + ...+++|||
T Consensus 79 ~~~rELF~S~~~d~~p~~~IrGKC~V~~~~d~~~l~~----------------~-----------------~~~~d~Ff~ 125 (164)
T cd04709 79 LRHRELFLSRQVETLPATHIRGKCSVTLLNDTESARS----------------Y-----------------LAREDTFFY 125 (164)
T ss_pred cCcceeEEecccccccHHHeeeeEEEEEehhhhhhhh----------------c-----------------cCCCCEEEE
Confidence 6899999999999999999999999999999987532 0 145689999
Q ss_pred ceecccCCceeccC
Q psy10248 179 HKVYDFRTKRLLKN 192 (194)
Q Consensus 179 r~~YD~~~~~l~k~ 192 (194)
+.+||+.+++|+..
T Consensus 126 ~~~YDP~~k~l~~~ 139 (164)
T cd04709 126 SLVYDPEQKTLLAD 139 (164)
T ss_pred EEEECCCCCeeccc
Confidence 99999999999864
No 10
>smart00439 BAH Bromo adjacent homology domain.
Probab=99.96 E-value=5.9e-29 Score=187.18 Aligned_cols=119 Identities=27% Similarity=0.505 Sum_probs=102.7
Q ss_pred EEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCc-eEEEEEEeeccCcCCCCCCCCCCCCceEEeCCccccccceecc
Q psy10248 42 IIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGE-MMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIED 120 (194)
Q Consensus 42 ~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~-~~v~v~WfyRpeE~~~~~~~~~~~~ELF~S~~~D~~~v~~I~g 120 (194)
.|++||+|||++++ ..+++|||+|.+||++. ++. .+++|+|||||+||.+++...+++||||+|++.|++++++|.|
T Consensus 1 ~~~vgd~V~v~~~~-~~~~~~i~~I~~i~~~~-~~~~~~~~v~Wf~rp~e~~~~~~~~~~~~Elf~s~~~~~i~~~~I~~ 78 (120)
T smart00439 1 TIRVGDFVLVEPDD-ADEPYYIGRIEEIFETK-KNSEKMVRVRWFYRPEETVLEKAALFDKNEVFLSDEYDTVPLSDIIG 78 (120)
T ss_pred CcccCCEEEEeCCC-CCCCCEEEEEEEEEECC-CCCEEEEEEEEEEChhhccccccccCCCcceEEEccCccCChHHeee
Confidence 37899999999986 34689999999999995 566 8999999999999999888788999999999999999999999
Q ss_pred eeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceecccCCceeccCC
Q psy10248 121 KCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNP 193 (194)
Q Consensus 121 Kc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~~~~l~k~p 193 (194)
||.|++.++|.+..+. +. ...+++||||+.||..++++.+.|
T Consensus 79 kc~V~~~~~~~~~~~~------~~-------------------------~~~~~~f~cr~~yd~~~~~f~~~~ 120 (120)
T smart00439 79 KCNVLSKSDYPGLRPE------GK-------------------------IGEPDVFFCESLYDPEKGAFKKLP 120 (120)
T ss_pred EEEEEEcchhcccccc------cC-------------------------CCCCCeEEEEEEEccccCcccCCC
Confidence 9999999999773320 00 024579999999999999998765
No 11
>cd04710 BAH_fungalPHD BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.94 E-value=9e-27 Score=181.78 Aligned_cols=116 Identities=22% Similarity=0.394 Sum_probs=95.9
Q ss_pred eCCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCC-----------CCceEEEEEEeeccCcCCCCCCCCCCCCceEE
Q psy10248 38 IQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPE-----------DGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFA 106 (194)
Q Consensus 38 ~dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~-----------~g~~~v~v~WfyRpeE~~~~~~~~~~~~ELF~ 106 (194)
.+|.+|++||+|||.+++ +.+|.|||||.+|+...+ .+..+++|+|||||+||.... .++.+|||+
T Consensus 7 ~~g~~~~vgD~Vyv~~~~-~~ePyyIgrI~e~~~~~~~~~~~~~~~~~~~~~~vrV~wfYRp~Di~~~~--~~d~relf~ 83 (135)
T cd04710 7 KNGELLKVNDHIYMSSEP-PGEPYYIGRIMEFVPKHEFPSGIHARVFPASYFQVRLNWYYRPRDISRRV--VADSRLLYA 83 (135)
T ss_pred cCCeEEeCCCEEEEecCC-CCCCCEEEEEEEEEecCCCCccccccccCCCcEEEEEEEEeCHHHcCCcc--cCCceEEEE
Confidence 589999999999999986 468899999999998531 234789999999999996544 679999999
Q ss_pred eCCccccccceecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceecccCC
Q psy10248 107 SRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRT 186 (194)
Q Consensus 107 S~~~D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~~ 186 (194)
|+|.|++|+++|.|||+|...+++..... +. ..++.|||.+.||+-+
T Consensus 84 S~h~d~~p~~si~gKC~V~~~~di~~l~~----------------~~-----------------~~~~~Fyf~~lyD~~~ 130 (135)
T cd04710 84 SMHSDICPIGSVRGKCTVRHRDQIPDLEE----------------YK-----------------KRPNHFYFDQLFDRYI 130 (135)
T ss_pred EeeEeeechHHEEeEEEEEEecccchhhh----------------hc-----------------cCCCEEEEEeeeCcch
Confidence 99999999999999999999876533111 11 3468999999999998
Q ss_pred cee
Q psy10248 187 KRL 189 (194)
Q Consensus 187 ~~l 189 (194)
+|.
T Consensus 131 ~r~ 133 (135)
T cd04710 131 LRY 133 (135)
T ss_pred hhc
Confidence 875
No 12
>cd04720 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p. The Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.94 E-value=2.6e-26 Score=186.89 Aligned_cols=117 Identities=19% Similarity=0.295 Sum_probs=99.3
Q ss_pred CCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCC-CCC--------CCCceEEeCC
Q psy10248 39 QGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTS-YRD--------NKDEIFASRH 109 (194)
Q Consensus 39 dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~-~~~--------~~~ELF~S~~ 109 (194)
+|.+|++||+|+|++++ .+++|||+|.+|+++..++.+.+.|+|||||.|+..++. ..+ .+||||+|.|
T Consensus 49 d~~~~~vGD~Vlik~~~--~~~~~V~iI~ei~~~~~~~~v~i~v~Wy~r~~Ei~~~~~~~~~~~~~~~~~~~nElflT~~ 126 (179)
T cd04720 49 DGLELSVGDTILVKDDV--ANSPSVYLIHEIRLNTLNNEVELWVMWFLRWFEINPARYYKQFDPEFRSESNKNELYLTAE 126 (179)
T ss_pred CCeEEeCCCEEEEeCCC--CCCCEEEEEEEEEeCCCCCEEEEEEEEcCCHHHcccccccccccchhcccCCCceEEEecc
Confidence 89999999999999986 489999999999988544668999999999999987653 123 3799999999
Q ss_pred ccccccceecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceecccCCcee
Q psy10248 110 RDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRL 189 (194)
Q Consensus 110 ~D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~~~~l 189 (194)
.|.+++.+|+|||+||+.++|.+.... +...+.+||||++||+.+|..
T Consensus 127 ~d~i~l~~Ii~k~~Vls~~ef~~~~~~--------------------------------~~~~~~~F~cR~~~d~~~~~F 174 (179)
T cd04720 127 LSEIKLKDIIDKANVLSESEFNDLSTD--------------------------------DKNGERTFFCRYACEPDGEEF 174 (179)
T ss_pred cceEEhhheeeeEEEecHHHhhhhccc--------------------------------ccCCCceEEEEEEEeCCCCeE
Confidence 999999999999999999999874321 114567999999999998854
No 13
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.93 E-value=4.2e-26 Score=187.85 Aligned_cols=124 Identities=21% Similarity=0.310 Sum_probs=102.1
Q ss_pred eCCEEEecCCEEEEEcCC--------------C--CCCCCeEEEEeeEeecCC-----CCceEEEEEEeeccCcCCCCCC
Q psy10248 38 IQGDIIQPRDCILLKSGT--------------R--KKDLPFIAKVGALWENPE-----DGEMMVSLLWYYRPEHTEQGTS 96 (194)
Q Consensus 38 ~dg~~~~vGD~Vlv~~~~--------------~--~~~~p~IarI~~i~ed~~-----~g~~~v~v~WfyRpeE~~~~~~ 96 (194)
.+|.+|++||+|||.++- + ...+.+|++|.+|++..+ ....+++|+||||||||....+
T Consensus 3 ~~Gv~Y~vgD~VYv~p~~f~~~~~~~~~~~~G~N~~~~p~~I~qI~ei~~~k~~~~~~~~~~~vrVrwFYRPEdt~~~~~ 82 (202)
T cd04708 3 YDGVTYSVGDFLYVSPDAFAEEERERATFKAGRNVGLKAFVVCQVLEIVVEKESKQADVASTQVKVRRFYRPEDVSPEKA 82 (202)
T ss_pred CCCEEEecCCeEEECcccccccccccccccccccCCCCCcEEEEEEEEEecccCCCCCCcceEEEEEEEechhhcCcccc
Confidence 379999999999999980 0 135789999999997532 2378999999999999976556
Q ss_pred CCCCCCceEEeCCccccccceecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEE
Q psy10248 97 YRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVF 176 (194)
Q Consensus 97 ~~~~~~ELF~S~~~D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf 176 (194)
...+.+|||+|++.+++|+++|.|||+|+..+++..... |. ..+++|
T Consensus 83 y~sd~rely~Sde~~~~~~~~I~GKC~V~~~~d~~~~~~----------------~~-----------------~~~~~F 129 (202)
T cd04708 83 YASDIREVYYSEDTLTVPVEAVEGKCEVRKKSDLPDSDA----------------PV-----------------IFEHVF 129 (202)
T ss_pred eecCceeEEEeccceeechhHcceEEEEEecCcchhhhc----------------cc-----------------cCCCce
Confidence 677999999999999999999999999998866544211 11 346899
Q ss_pred EEceecccCCceeccCCC
Q psy10248 177 YCHKVYDFRTKRLLKNPC 194 (194)
Q Consensus 177 ~Cr~~YD~~~~~l~k~p~ 194 (194)
||+..||+.||.+.++|.
T Consensus 130 fc~~~Yd~~tg~f~~lP~ 147 (202)
T cd04708 130 FCELLYDPAKGSLKQLPP 147 (202)
T ss_pred EEEEEEcCCCCccCCCCc
Confidence 999999999999999984
No 14
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.93 E-value=4.5e-27 Score=184.65 Aligned_cols=98 Identities=23% Similarity=0.450 Sum_probs=89.4
Q ss_pred CCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCCCCCCCCceEEeCCccccccceecceeEEecchhHhHhhhhh
Q psy10248 58 KDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKM 137 (194)
Q Consensus 58 ~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~~~~~~~ELF~S~~~D~~~v~~I~gKc~Vl~~~ey~~~~~~~ 137 (194)
+..+|||+|++||++. |+.++.++|||||+||.+|+++.++.+|||+|++.|++++++|+|||.|+++++|.+...
T Consensus 50 ~~~~~vArIekiW~~~--G~~~~~grWy~rPEET~~gr~~~~~~kEvFlS~~~d~~~~~~I~gkC~V~~~keY~k~e~-- 125 (148)
T cd04718 50 SGDLWLARIEKLWEEN--GTYWYAARWYTLPEETHMGRQPHNLRRELYLTNDFADIEMECILRHCSVKCPKEFRDASN-- 125 (148)
T ss_pred cCchHHHHHHHHHhcc--CceEEEEEEEeCchhccCccccccccceeeeccccccccHHHHhcccEEcCHHHcccccC--
Confidence 4678999999999973 899999999999999999999999999999999999999999999999999999986321
Q ss_pred cccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceecccCCceeccC
Q psy10248 138 RSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKN 192 (194)
Q Consensus 138 ~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~~~~l~k~ 192 (194)
..++||+|+..||.++|+.++.
T Consensus 126 ---------------------------------~g~Dvy~Ce~~Yd~~~~~Fkr~ 147 (148)
T cd04718 126 ---------------------------------DGDDVFLCEYEYDVHWQSFKRL 147 (148)
T ss_pred ---------------------------------CCCceEEEEEEEhhhcCceeec
Confidence 4567999999999999998874
No 15
>cd04712 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.90 E-value=6.9e-23 Score=158.98 Aligned_cols=114 Identities=18% Similarity=0.159 Sum_probs=97.4
Q ss_pred CCEEEecCCEEEEEcCCCCC----------CCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCCCCCCCCceEEeC
Q psy10248 39 QGDIIQPRDCILLKSGTRKK----------DLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASR 108 (194)
Q Consensus 39 dg~~~~vGD~Vlv~~~~~~~----------~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~~~~~~~ELF~S~ 108 (194)
.|..|++||+|+|..++. + .+++|++|+.||++. +|++|++++|||||+||..+. .+.++|||+|+
T Consensus 2 ~~~~i~vGD~V~v~~d~~-~~~~~~~~~~~~~~~i~~V~~~~e~~-~g~~~~h~~W~yrp~eTv~g~--~~~~~ElFLSd 77 (130)
T cd04712 2 HGLTIRVGDVVSVERDDA-DSTTKWNDDHRWLPLVQFVEYMKKGS-DGSKMFHGRWLYRGCDTVLGN--YANERELFLTN 77 (130)
T ss_pred CCCEEeCCCEEEEcCCCC-CccccccccccccceEEEEEEeeecC-CCceEEEEEEEEcchhccccc--cCCCceEEEec
Confidence 478899999999999872 3 489999999999995 889999999999999999987 78999999999
Q ss_pred Cccccccc----eecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceeccc
Q psy10248 109 HRDINSVA----CIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDF 184 (194)
Q Consensus 109 ~~D~~~v~----~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~ 184 (194)
+++.++++ .|.+||.|.....+. + ......|+|+-.|++
T Consensus 78 ~c~~~~~~~~~~~I~~k~~V~~~~~~~-----------~--------------------------~~~~~~F~r~syy~~ 120 (130)
T cd04712 78 ECTCLELDLLSTEIKGVHKVDWSGTPW-----------G--------------------------KGLPEFFVRQSYYWP 120 (130)
T ss_pred cccccccccccceeEEEEEEEEecCcC-----------C--------------------------cCCCCEEEEEEEECc
Confidence 99999999 999999998652211 1 133457888888898
Q ss_pred CCceeccCC
Q psy10248 185 RTKRLLKNP 193 (194)
Q Consensus 185 ~~~~l~k~p 193 (194)
.+|....+|
T Consensus 121 e~~~F~~l~ 129 (130)
T cd04712 121 ERGAFTSLK 129 (130)
T ss_pred cCCceEcCC
Confidence 999998877
No 16
>cd04760 BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.89 E-value=5e-23 Score=158.09 Aligned_cols=123 Identities=20% Similarity=0.362 Sum_probs=96.1
Q ss_pred CEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCCCCCCCCceEEeCCccccccceec
Q psy10248 40 GDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIE 119 (194)
Q Consensus 40 g~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~~~~~~~ELF~S~~~D~~~v~~I~ 119 (194)
|.+|.+||+|+|++++ +..++|||+|+.||++. ++.+|++++||+||+||..+++ ++++|||+|++++.+++++|.
T Consensus 1 g~~i~vGD~V~v~~~~-~~~p~~I~rV~~mfe~~-~g~k~~h~rWf~Rg~dTVlG~~--~~~kEvFlsd~c~d~~l~~I~ 76 (124)
T cd04760 1 GEELEAGDCVSVKPDD-PTKPLYIARVTYMWKDS-IGGKMFHAHWFCRGSDTVLGET--SDPLELFLVDECEDMALSSIH 76 (124)
T ss_pred CCEEecCCEEEEecCC-CCCCcEEEEEhhheecC-CCCcEEEEEEEEECCccccccc--CCCcEEEeecccCCcchHHhe
Confidence 5789999999999875 47899999999999995 7899999999999999999874 899999999999999999999
Q ss_pred ceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceecccCCcee
Q psy10248 120 DKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRL 189 (194)
Q Consensus 120 gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~~~~l 189 (194)
+||.|+..+.=...-. ..|.+. |. . ...+..+.|||..-||+...|.
T Consensus 77 ~Kv~V~~~~p~~~w~~-----~~g~~~-----~~----------~---~~~ddg~tffyq~~yd~~~arf 123 (124)
T cd04760 77 GKVNVIYKAPSENWSM-----EGGMDE-----ED----------E---IFEDDGKTFFYQKWYDPECARF 123 (124)
T ss_pred eeeEEEEeCCCcchhh-----hcCCCC-----cc----------c---cccCCCCeEEEEEeeChhhhcc
Confidence 9999986421100000 011110 10 0 1226779999999999987663
No 17
>cd04719 BAH_Orc1p_animal BAH, or Bromo Adjacent Homology domain, as present in animal homologs of Saccharomyces cerevisiae Orc1p. Orc1 is part of the Yeast Sir1-origin recognition complex. The Orc1p BAH doman functions in epigenetic silencing. In vertebrates, a similar ORC protein complex exists, which has been shown essential for DNA replication in Xenopus laevis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.87 E-value=4.1e-22 Score=154.12 Aligned_cols=90 Identities=18% Similarity=0.252 Sum_probs=77.9
Q ss_pred EEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCC---ceEEEEEEeeccCcCCCCC----CCCCCCCceEEeCCc---
Q psy10248 41 DIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDG---EMMVSLLWYYRPEHTEQGT----SYRDNKDEIFASRHR--- 110 (194)
Q Consensus 41 ~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g---~~~v~v~WfyRpeE~~~~~----~~~~~~~ELF~S~~~--- 110 (194)
.+|+|||||+|++++ ++++|||+|++||++. ++ ...++|+|||||+|++... .+..+++|||+|++.
T Consensus 2 ~~i~vGd~VlI~~~d--~~~~yVAkI~~i~e~~-~~~~~~~~~~VqWy~R~~Ev~~~~~~~~~~~~~~~EvF~~~~~~~~ 78 (128)
T cd04719 2 LTIEVGDFVLIEGED--ADGPDVARILHLYEDG-NEDDDPKRAIVQWFSRPSEVPKNKRKLLGREPHSQEVFFYSRSSCD 78 (128)
T ss_pred eEEecCCEEEEECCC--CCCCcEeeehhhhccc-cCCcccceEEEEcccChHHccccchhhccCCCCCcEEEEecCcccc
Confidence 479999999999997 3788999999999984 43 5799999999999997533 245689999999987
Q ss_pred cccccceecceeEEecchhHhHh
Q psy10248 111 DINSVACIEDKCYVLTYREYCRY 133 (194)
Q Consensus 111 D~~~v~~I~gKc~Vl~~~ey~~~ 133 (194)
|.++++||.|||.|++.++|..+
T Consensus 79 ~~i~~etI~gkc~V~~~~~y~~l 101 (128)
T cd04719 79 NDIDAETIIGKVRVEPVEPKTDL 101 (128)
T ss_pred CcEeHHHcccEEEEEEcCCccch
Confidence 48999999999999999998764
No 18
>cd04711 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.82 E-value=5.1e-20 Score=142.70 Aligned_cols=100 Identities=19% Similarity=0.391 Sum_probs=79.8
Q ss_pred CCCCCeEEEEeeEeecCCCC------ceEEEEEEeeccCcCCCCCC--CCCCCCceEEeCCccccccceecceeEEec--
Q psy10248 57 KKDLPFIAKVGALWENPEDG------EMMVSLLWYYRPEHTEQGTS--YRDNKDEIFASRHRDINSVACIEDKCYVLT-- 126 (194)
Q Consensus 57 ~~~~p~IarI~~i~ed~~~g------~~~v~v~WfyRpeE~~~~~~--~~~~~~ELF~S~~~D~~~v~~I~gKc~Vl~-- 126 (194)
.+.|++||||.+|....+.. ..+++|+|||||+||..+.. ...+.+|||+|+|.|++|+++|.|||+|..
T Consensus 23 ~~ePy~VgrI~eI~~~k~~~~k~~~~~ikvrV~~fYRPEdi~~g~~~ayhsDirevy~Sd~~~~~~~~~I~GKC~V~~~~ 102 (137)
T cd04711 23 APEPFRIGRIKEIFCAKRSNGKPNESDIKLRINKFYRPENTHKGFKATYHADINMLYWSDEEATVDFSAVQGRCTVEYGE 102 (137)
T ss_pred CCCCcEEEEEEEEecCCCCCCCCCccceEEEEEEEecccccccccccccccceeeEEeecceeecChhhccceEEEEecc
Confidence 46889999999998764333 57899999999999998753 455679999999999999999999999994
Q ss_pred -----chhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceecccCCceeccCCC
Q psy10248 127 -----YREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNPC 194 (194)
Q Consensus 127 -----~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~~~~l~k~p~ 194 (194)
+++|.. -..+-|||+..||.+||...-.|+
T Consensus 103 di~~s~~~y~~--------------------------------------~gpd~Fyf~~~Y~a~t~~F~d~p~ 137 (137)
T cd04711 103 DLPESVQEYSG--------------------------------------GGPDRFYFLEAYNAKTKSFEDPPN 137 (137)
T ss_pred ccchhHHHHhc--------------------------------------CCCcceEEhhhhccccCcccCCCC
Confidence 444411 011359999999999999876663
No 19
>KOG1886|consensus
Probab=99.70 E-value=1.5e-17 Score=150.60 Aligned_cols=130 Identities=26% Similarity=0.441 Sum_probs=104.5
Q ss_pred cccccccEEeeCCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCCCC---CCCCce
Q psy10248 28 VRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYR---DNKDEI 104 (194)
Q Consensus 28 ~~~~Y~~~~~~dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~~~---~~~~EL 104 (194)
.+.+|.++.+.+|..+..||.|++.+++ +..+||||+|..||.+...+...+.|+|||||+|+..+.... -.++||
T Consensus 36 k~~h~~t~~~~~g~~~~~~d~vllvped-~~~pPyvaii~~i~a~~~g~~~k~ev~W~YrPee~~~~~~~~~~a~~~rel 114 (464)
T KOG1886|consen 36 KSLHFETFIYRGGRYINYGDSVLLVPED-PGKPPYVAIIEDIYAQERGGNVKVEVQWFYRPEESEGGGSGKWGAKQPREL 114 (464)
T ss_pred ccccccceeeccCcccccCcceeecCCC-CCCCCeeEEEeeeeccccCCCcceecccccCCCccCCCCCCCcccCCCccc
Confidence 3556777776455555559999999987 578999999999999875579999999999999998876433 356699
Q ss_pred EEeCCccccccceecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceeccc
Q psy10248 105 FASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDF 184 (194)
Q Consensus 105 F~S~~~D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~ 184 (194)
|+|.|.|.+++++|.++|.|.++..|.+... + ....-|+||++||.
T Consensus 115 F~SfH~De~~A~ti~~rC~V~fvp~~kqlp~-------~---------------------------~~~~~f~~r~vYd~ 160 (464)
T KOG1886|consen 115 FLSFHEDEAFAETILHRCKVHFVPAYKQLPN-------R---------------------------VGHESFICRRVYDA 160 (464)
T ss_pred cccccccchhhhhhcccceeeeccccccccc-------c---------------------------CCCCCccccccccc
Confidence 9999999999999999999999987766321 1 12234999999999
Q ss_pred CCceeccC
Q psy10248 185 RTKRLLKN 192 (194)
Q Consensus 185 ~~~~l~k~ 192 (194)
-++++.+.
T Consensus 161 ~~~~~~~~ 168 (464)
T KOG1886|consen 161 VTSKLRKL 168 (464)
T ss_pred ccccccCc
Confidence 99988663
No 20
>KOG1827|consensus
Probab=99.57 E-value=3.1e-15 Score=139.98 Aligned_cols=131 Identities=27% Similarity=0.451 Sum_probs=112.9
Q ss_pred ccccccccc-EEeeCCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCCCCCCCCce
Q psy10248 26 PVVRNCYPA-MRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEI 104 (194)
Q Consensus 26 ~~~~~~Y~~-~~~~dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~~~~~~~EL 104 (194)
...+..+.. +. +||..+.+||.||+.+.. ....+.|+.|.++|+++ +|+.+..+.|||||++|.+...+.|..+||
T Consensus 174 ~~l~~~~~~~~~-i~~~~~~~gd~vlv~~~~-d~~~p~v~~Ier~w~~~-dg~k~~~~~w~~rP~~T~H~a~r~F~k~Ev 250 (629)
T KOG1827|consen 174 GGLHYHELGPVE-IDGTKYIVGDYVLVQNPA-DNLKPIVAQIERLWKLP-DGEKWPQGCWIYRPEETVHRADRKFYKQEV 250 (629)
T ss_pred CCCCcccCCCcc-ccCcccccCceeeecCcc-cccCCceeeecccccCc-ccccccceeEeeCCccCccccccchhcccc
Confidence 344555555 55 699999999999999986 34899999999999996 899999999999999999988899999999
Q ss_pred EEeCCccccccceecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceeccc
Q psy10248 105 FASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDF 184 (194)
Q Consensus 105 F~S~~~D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~ 184 (194)
|-+......++..|.|+|.|+.+.+|.+.++ ++ .....||+|.+-||.
T Consensus 251 fkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p------~~--------------------------ls~~dv~lcesRyn~ 298 (629)
T KOG1827|consen 251 FKTSLYRDDLVQRLLGKCYVMKPTEYISGDP------EN--------------------------LSEEDVFLCESRYNE 298 (629)
T ss_pred eecccccccHHHHhhcceEEeehhHhhhcCc------cc--------------------------ccccceeeEEeeecc
Confidence 9999999999999999999999999988543 22 245579999999999
Q ss_pred CCceecc
Q psy10248 185 RTKRLLK 191 (194)
Q Consensus 185 ~~~~l~k 191 (194)
..+..-|
T Consensus 299 ~~K~f~k 305 (629)
T KOG1827|consen 299 QLKKFNK 305 (629)
T ss_pred chhhhcc
Confidence 8876643
No 21
>KOG3554|consensus
Probab=99.21 E-value=9.6e-13 Score=119.08 Aligned_cols=116 Identities=20% Similarity=0.353 Sum_probs=95.5
Q ss_pred EEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCC---------C----------------
Q psy10248 41 DIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQG---------T---------------- 95 (194)
Q Consensus 41 ~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~---------~---------------- 95 (194)
.+|+|||+||+..++ +++..|-||+++-++. +|+..++|..|||..||+.. +
T Consensus 4 n~y~vgd~vYf~~ss--s~PYliRrIEELnKTa-~GnVeAkvVc~~RRRDIs~~L~~lAD~~ar~~~~y~a~~~a~~~~e 80 (693)
T KOG3554|consen 4 NMYRVGDYVYFENSS--SNPYLIRRIEELNKTA-NGNVEAKVVCYLRRRDISSHLLKLADKHARRFDNYAAPEAAPEATE 80 (693)
T ss_pred ccceecceEEEecCC--CChHHHHHHHHHhccc-cCCcceEEEEEEEccchHHHHHHHHHHHhhhcccccCcccCcccch
Confidence 379999999999986 6788899999999984 89999999999999998742 0
Q ss_pred --------C-----------CCCCCCceEEeCCccccccceecceeEEecchhHhHhhhhhcccccccccccccCCCCCC
Q psy10248 96 --------S-----------YRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGE 156 (194)
Q Consensus 96 --------~-----------~~~~~~ELF~S~~~D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~ 156 (194)
. ...-.+|||+|.+.+..|...|.|||.|.-+.|-+...
T Consensus 81 ~e~EEe~e~p~~vdlt~~qrhqLrhrElFlsRQ~EsLPAthIRGKCsV~LLnete~~~---------------------- 138 (693)
T KOG3554|consen 81 AEIEEESECPAPVDLTEKQRHQLRHRELFLSRQSESLPATHIRGKCSVTLLNETESLQ---------------------- 138 (693)
T ss_pred hhhhhhccCCCcCCCCHHHHHHHHHHHHHHhhhhccCchhhhccceeEEEecChHHHH----------------------
Confidence 0 01246899999999999999999999998775554432
Q ss_pred CccccccCCCCCCCCCCeEEEEceecccCCceeccC
Q psy10248 157 GQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKN 192 (194)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~~~~l~k~ 192 (194)
.|. +.++.||...|||+.+++||.+
T Consensus 139 -~YL----------~~eDtFfySLVyDP~~kTLLAD 163 (693)
T KOG3554|consen 139 -SYL----------EKEDTFFYSLVYDPNQKTLLAD 163 (693)
T ss_pred -hhc----------cccceeEEEeeeccchhhhhcc
Confidence 122 6678899999999999999875
No 22
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=92.79 E-value=0.018 Score=51.74 Aligned_cols=93 Identities=13% Similarity=-0.016 Sum_probs=80.3
Q ss_pred eCCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCCCCCCCCceEEeCCccccccce
Q psy10248 38 IQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVAC 117 (194)
Q Consensus 38 ~dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~~~~~~~ELF~S~~~D~~~v~~ 117 (194)
+++....+|+.+.+...+ ....|.++.+...|.+. +...+.-+.|||+|+++...-.+.+..+++......+...+..
T Consensus 272 i~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (371)
T COG5076 272 ITNSQAHVGAWPFLRPVS-DEEVPDYYKDIRDPMDL-STKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNA 349 (371)
T ss_pred ccccccccccccccccCC-cccccchhhhhhccccc-ccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhc
Confidence 466688999999999886 47899999999999985 5666669999999998777777889999999999999999999
Q ss_pred ecceeEEecchhHhH
Q psy10248 118 IEDKCYVLTYREYCR 132 (194)
Q Consensus 118 I~gKc~Vl~~~ey~~ 132 (194)
+.+.|.|.....+.+
T Consensus 350 ~~~~~~~~~~~~~~~ 364 (371)
T COG5076 350 NVLEDFVIKKTRLIR 364 (371)
T ss_pred cchhhhHhhhhhhhh
Confidence 999999987766655
No 23
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=92.02 E-value=0.27 Score=32.40 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=29.6
Q ss_pred EecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCc
Q psy10248 43 IQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEH 90 (194)
Q Consensus 43 ~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE 90 (194)
+++||.|.+++++ ...-|..|..- ......++.++||---.+
T Consensus 1 f~~GDvV~LKSGG---p~MTV~~v~~~---~~~~~~~v~C~WFd~~~~ 42 (53)
T PF09926_consen 1 FKIGDVVQLKSGG---PRMTVTEVGPN---AGASGGWVECQWFDGHGE 42 (53)
T ss_pred CCCCCEEEEccCC---CCeEEEEcccc---ccCCCCeEEEEeCCCCCc
Confidence 5799999999997 45556555443 124568999999975443
No 24
>PRK13251 transcription attenuation protein MtrB; Provisional
Probab=86.72 E-value=2.7 Score=29.31 Aligned_cols=48 Identities=19% Similarity=0.189 Sum_probs=38.1
Q ss_pred EEEEEeeccCcCCCCCCCCCCCCceEEeCCccccccceecceeEEecc
Q psy10248 80 VSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTY 127 (194)
Q Consensus 80 v~v~WfyRpeE~~~~~~~~~~~~ELF~S~~~D~~~v~~I~gKc~Vl~~ 127 (194)
|.|.=.-|-.|+.-.-....+..||.+...++-.+.-.|.|||.|++.
T Consensus 19 V~vIgltrg~dtkfhhtEkLDkGEVmiaqftehtsaiKirGkA~I~t~ 66 (75)
T PRK13251 19 VNVIGLTRGKDTKFHHTEKLDKGEVMIAQFTEHTSAIKIRGKAEIQTK 66 (75)
T ss_pred eEEEEEecCCCccchhhhhcCCCcEEEEEeecceeEEEEeceEEEEee
Confidence 555566677777544445678899999999999999999999999874
No 25
>COG5475 Uncharacterized small protein [Function unknown]
Probab=86.59 E-value=2.9 Score=27.93 Aligned_cols=50 Identities=18% Similarity=0.147 Sum_probs=32.0
Q ss_pred EEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCCCCCCCCceE
Q psy10248 41 DIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIF 105 (194)
Q Consensus 41 ~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~~~~~~~ELF 105 (194)
..+++||.|-+++++ | ++.-..-...-|+.++||-+-. .+..-|.++||.
T Consensus 3 ~~FstgdvV~lKsGG----P-------~Mtvs~~ss~Gmy~C~Wf~g~g----~~~~~F~ed~Lv 52 (60)
T COG5475 3 MSFSTGDVVTLKSGG----P-------RMTVSGYSSDGMYECRWFDGYG----VKREAFHEDELV 52 (60)
T ss_pred ceeecCcEEEeecCC----c-------eEEEeccccCCeEEEEEecCCC----ccccccccccee
Confidence 468999999999987 1 1211111233689999998754 223446666664
No 26
>PF02081 TrpBP: Tryptophan RNA-binding attenuator protein; InterPro: IPR023558 The tryptophan RNA-binding attenuation protein (TRAP) regulates expression of the tryptophan biosynthetic genes in Bacillus sp. by binding to the leader region of the nascent trp operon mRNA []. The crystal structure of the Trp RNA-binding attenuation protein of Bacillus subtilis has been solved []. TRAP forms an oligomeric ring consisting of 11 single-domain subunits, where each subunit adopts a double-stranded beta-helix structure with the appearance of a beta-sandwich of distinct architecture and jelly-roll fold. The 11 subunits are stabilised by 11 inter-subunit strands, forming a beta-wheel with a large central hole. TRAP is activated by binding to tryptophan in clefts between adjacent beta-strands, which induces conformational changes in the protein. Activated TRAP binds an mRNA target sequence consisting of 11 (G/U)AG repeats, separated by 2-3 spacer nucleotides. The spacer nucleotides do not make direct contact with the TRAP protein, but they do influence the conformation of the RNA, which might influence the specificity of TRAP []. This entry represents the structural domain in the TRAP family of proteins.; PDB: 3ZTE_U 1GTN_H 1UTD_D 1GTF_D 1UTF_F 2ZP9_K 1C9S_Q 2EXT_A 3AQD_T 1QAW_C ....
Probab=84.50 E-value=2 Score=29.98 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=34.6
Q ss_pred EEEEEeeccCcCCCCCCCCCCCCceEEeCCccccccceecceeEEecc
Q psy10248 80 VSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTY 127 (194)
Q Consensus 80 v~v~WfyRpeE~~~~~~~~~~~~ELF~S~~~D~~~v~~I~gKc~Vl~~ 127 (194)
|.|.=.-|-.||.-.-....+..||.+...++-.+.--|.||+.|++.
T Consensus 19 V~ViGlTRG~dtkfhHtEkLDkGEVmIaQFTehtsaiKiRGkA~I~t~ 66 (75)
T PF02081_consen 19 VTVIGLTRGTDTKFHHTEKLDKGEVMIAQFTEHTSAIKIRGKAEILTK 66 (75)
T ss_dssp EEEEEEESSSSSSEEEEEEE-TT-EEEEE-BSSEEEEEEESSEEEEET
T ss_pred eEEEEEecCCcccchhhhccCCCcEEEEEeecceEEEEEeeeEEEEec
Confidence 555556666666543334567899999999999999999999999874
No 27
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=80.47 E-value=3.4 Score=42.09 Aligned_cols=66 Identities=12% Similarity=0.165 Sum_probs=50.6
Q ss_pred CcccccccccEEeeCCEEEecCCEEEEEcCCCCC------------------CCC---eEEEEeeEeecCCCCceEEEEE
Q psy10248 25 HPVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKK------------------DLP---FIAKVGALWENPEDGEMMVSLL 83 (194)
Q Consensus 25 ~~~~~~~Y~~~~~~dg~~~~vGD~Vlv~~~~~~~------------------~~p---~IarI~~i~ed~~~g~~~v~v~ 83 (194)
.-.....|.++. ++++.|.+||.|+|...+... ... -=|+|..|+++..+....+.|.
T Consensus 436 ~y~~g~iye~~~-in~~~ys~g~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~kg~is~fy~~~~~~~~~~e~c 514 (1164)
T PTZ00112 436 QYEDGVIYESIQ-INDVEYSIGDDVLIFCTGNGNTYNGKSGTKKNQNNKNIKENIYQLRKGKISSFYKNTNSNQVEAEVC 514 (1164)
T ss_pred cccCceEEEEEE-EcceeeccCCcEEEEEcCCCCccccccCccccccccchhhhhheecccccchhhhcCCCceeeEEEE
Confidence 345677899999 699999999999987654110 011 2389999999866678999999
Q ss_pred EeeccCcC
Q psy10248 84 WYYRPEHT 91 (194)
Q Consensus 84 WfyRpeE~ 91 (194)
.||-..|.
T Consensus 515 ~y~d~~d~ 522 (1164)
T PTZ00112 515 IYYDQHDA 522 (1164)
T ss_pred EEEccccH
Confidence 99988774
No 28
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=79.67 E-value=2.9 Score=29.93 Aligned_cols=42 Identities=12% Similarity=-0.016 Sum_probs=32.4
Q ss_pred EecCCEEEEEcCCCCCCCCeEEEEeeEeecCC--CCceEEEEEEeec
Q psy10248 43 IQPRDCILLKSGTRKKDLPFIAKVGALWENPE--DGEMMVSLLWYYR 87 (194)
Q Consensus 43 ~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~--~g~~~v~v~WfyR 87 (194)
+.+||-|..+-.+ -+.|-|+|.+...+.. ....++.|+||-.
T Consensus 1 f~vGDlVWaK~kg---~pwWP~~V~~~~~~~~~~~~~~~~~V~fFGs 44 (87)
T cd05835 1 FNVGDLVWGKIKG---FPWWPGRVVSITVTSKRPPVVGMRWVTWFGS 44 (87)
T ss_pred CCCCCEEEEecCC---CCCCCeEEechhhcccccCCCCeEEEEEeCC
Confidence 4689999999876 7899999999865431 2246788888873
No 29
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=79.67 E-value=4.1 Score=29.04 Aligned_cols=39 Identities=8% Similarity=-0.048 Sum_probs=32.2
Q ss_pred EecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeecc
Q psy10248 43 IQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRP 88 (194)
Q Consensus 43 ~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRp 88 (194)
+.+||.|.-+-.+ -|.|-|+|.++- ++...+.|.||=..
T Consensus 1 f~~gdlVWaK~~g---~P~WPa~I~~~~----~~~~k~~V~FfG~~ 39 (80)
T cd06080 1 FEKNDLVWAKIQG---YPWWPAVIKSIS----RKKQKARVNFIGDN 39 (80)
T ss_pred CCCCCEEEEeCCC---CCCCCEEEeeec----CCCCEEEEEEeCCC
Confidence 4689999999876 799999999983 34678999999776
No 30
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=76.77 E-value=5.6 Score=28.28 Aligned_cols=43 Identities=9% Similarity=0.034 Sum_probs=34.5
Q ss_pred EEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeecc
Q psy10248 42 IIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRP 88 (194)
Q Consensus 42 ~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRp 88 (194)
.+++||.|.-+-.+ -++|-|+|.+.-+. ......+.|+||-..
T Consensus 2 ~f~~GdlVwaK~kG---yp~WPa~I~~~~~~-~~~~~~~~V~FfGt~ 44 (83)
T cd05834 2 QFKAGDLVFAKVKG---YPAWPARVDEPEDW-KPPGKKYPVYFFGTH 44 (83)
T ss_pred CCCCCCEEEEecCC---CCCCCEEEeccccc-CCCCCEEEEEEeCCC
Confidence 36899999999875 89999999998654 234577999999864
No 31
>PF09871 DUF2098: Uncharacterized protein conserved in archaea (DUF2098); InterPro: IPR019209 This family of proteins have no known function.
Probab=72.29 E-value=8 Score=28.27 Aligned_cols=42 Identities=36% Similarity=0.538 Sum_probs=31.2
Q ss_pred EEecCCEE-EEEcCCCCCCCCeEEEEeeEeecCCCCceEEEE---EEeeccCcCC
Q psy10248 42 IIQPRDCI-LLKSGTRKKDLPFIAKVGALWENPEDGEMMVSL---LWYYRPEHTE 92 (194)
Q Consensus 42 ~~~vGD~V-lv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v---~WfyRpeE~~ 92 (194)
.|.+|++| |+.++ -+|+|.+|-++ ++..+|.+ .-||||+-+.
T Consensus 2 ~I~vGs~VRY~~TG-------T~G~V~diK~e--d~~~wv~LD~t~L~Yr~~~Le 47 (91)
T PF09871_consen 2 PIKVGSYVRYINTG-------TVGKVVDIKEE--DGETWVLLDSTDLYYRPDYLE 47 (91)
T ss_pred cceeCCEEEECCCC-------eEEEEEEEEEe--CCCeEEEEccCCceeecceeE
Confidence 47899998 56665 69999999554 67788877 5677776654
No 32
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=70.79 E-value=8.5 Score=25.63 Aligned_cols=42 Identities=21% Similarity=0.154 Sum_probs=31.1
Q ss_pred EecCCEEEEEcCCCCCCCCeEEEEeeEeecC------CCCceEEEEEEeec
Q psy10248 43 IQPRDCILLKSGTRKKDLPFIAKVGALWENP------EDGEMMVSLLWYYR 87 (194)
Q Consensus 43 ~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~------~~g~~~v~v~WfyR 87 (194)
|++||.|..+-.+ -+.|-|+|..-.... ...+..+.|++|-.
T Consensus 1 f~~GdlVwaK~~G---~p~WPa~V~~~~~~~~~~~~~~~~~~~~~V~Ffg~ 48 (63)
T smart00293 1 FKPGDLVWAKMKG---FPWWPALVVSPKETPDNIRKRKRFENLYPVLFFGD 48 (63)
T ss_pred CCCCCEEEEECCC---CCCCCeEEcCcccCChhHhhccCCCCEEEEEEeCC
Confidence 4789999999986 789999999886532 12245677777753
No 33
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=70.75 E-value=11 Score=28.87 Aligned_cols=44 Identities=18% Similarity=0.096 Sum_probs=30.2
Q ss_pred EEEecCCEEEEEcCCCCCCCCeE-EEEeeEeecCCCCceEEEEEEee
Q psy10248 41 DIIQPRDCILLKSGTRKKDLPFI-AKVGALWENPEDGEMMVSLLWYY 86 (194)
Q Consensus 41 ~~~~vGD~Vlv~~~~~~~~~p~I-arI~~i~ed~~~g~~~v~v~Wfy 86 (194)
-.+++||+|+...+. .+..|+ |+|....+........+.|..|.
T Consensus 54 ~~L~~GD~VLA~~~~--~~~~Y~Pg~V~~~~~~~~~~~~~~~V~f~n 98 (124)
T PF15057_consen 54 HSLQVGDKVLAPWEP--DDCRYGPGTVIAGPERRASEDKEYTVRFYN 98 (124)
T ss_pred CcCCCCCEEEEecCc--CCCEEeCEEEEECccccccCCceEEEEEEC
Confidence 468999999999664 344566 99998776543445556665443
No 34
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=70.74 E-value=12 Score=24.19 Aligned_cols=36 Identities=19% Similarity=0.150 Sum_probs=25.7
Q ss_pred EecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEE
Q psy10248 43 IQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLL 83 (194)
Q Consensus 43 ~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~ 83 (194)
+.+|+.|++.-.+ ...|-|+|.++... .+....-|.
T Consensus 1 ~~vG~~v~~~~~~---~~~y~A~I~~~r~~--~~~~~YyVH 36 (55)
T PF11717_consen 1 FEVGEKVLCKYKD---GQWYEAKILDIREK--NGEPEYYVH 36 (55)
T ss_dssp --TTEEEEEEETT---TEEEEEEEEEEEEC--TTCEEEEEE
T ss_pred CCcCCEEEEEECC---CcEEEEEEEEEEec--CCCEEEEEE
Confidence 4689999998843 68899999999885 444444443
No 35
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=69.93 E-value=8.3 Score=27.08 Aligned_cols=41 Identities=20% Similarity=0.091 Sum_probs=31.6
Q ss_pred EecCCEEEEEcCCCCCCCCeEEEEeeEeecCC-----CCceEEEEEEee
Q psy10248 43 IQPRDCILLKSGTRKKDLPFIAKVGALWENPE-----DGEMMVSLLWYY 86 (194)
Q Consensus 43 ~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~-----~g~~~v~v~Wfy 86 (194)
+++||.|..+-.+ -+.|-|+|.+..+... .....+.|++|-
T Consensus 1 f~~GdlVwaK~~g---~pwWPa~V~~~~~~~~~~~~~~~~~~~~V~Ffg 46 (87)
T cd05162 1 FRPGDLVWAKMKG---YPWWPALVVDPPKDSKKAKKKAKEGKVLVLFFG 46 (87)
T ss_pred CCCCCEEEEeCCC---CCCCCEEEccccccchhhhccCCCCEEEEEEeC
Confidence 4789999999986 7899999999876521 224577888885
No 36
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=66.18 E-value=22 Score=25.07 Aligned_cols=31 Identities=10% Similarity=0.178 Sum_probs=23.5
Q ss_pred EEecCCEEEEEcCCC----CCCCCeEEEEeeEeec
Q psy10248 42 IIQPRDCILLKSGTR----KKDLPFIAKVGALWEN 72 (194)
Q Consensus 42 ~~~vGD~Vlv~~~~~----~~~~p~IarI~~i~ed 72 (194)
-++.||+|+|+.+++ .+..-|+|.|+..-..
T Consensus 5 ~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~Vi~~~gg 39 (75)
T PF11302_consen 5 SVKPGDTVIVQDEQEVGQKQDKDWWMGQVIHCEGG 39 (75)
T ss_pred ccCCCCEEEEecCccccccCCCCcEEEEEEEEecc
Confidence 368999999998752 2345689999988654
No 37
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=63.56 E-value=14 Score=19.83 Aligned_cols=25 Identities=16% Similarity=0.048 Sum_probs=20.3
Q ss_pred EecCCEEEEEcCCCCCCCCeEEEEeeEe
Q psy10248 43 IQPRDCILLKSGTRKKDLPFIAKVGALW 70 (194)
Q Consensus 43 ~~vGD~Vlv~~~~~~~~~p~IarI~~i~ 70 (194)
+++||.|.|..+. ..-.+|.|.++.
T Consensus 2 ~~~G~~V~I~~G~---~~g~~g~i~~i~ 26 (28)
T smart00739 2 FEVGDTVRVIAGP---FKGKVGKVLEVD 26 (28)
T ss_pred CCCCCEEEEeECC---CCCcEEEEEEEc
Confidence 5689999999986 566788888874
No 38
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and the bacterial transcription antitermination proteins NusG []. ; PDB: 3BBO_W 2HGJ_X 2HGQ_X 2HGU_X 1NPP_B 1M1G_D 1NPR_A 2XHC_A 2KVQ_G 2JVV_A ....
Probab=62.99 E-value=14 Score=21.23 Aligned_cols=25 Identities=20% Similarity=0.081 Sum_probs=21.4
Q ss_pred cCCEEEEEcCCCCCCCCeEEEEeeEeec
Q psy10248 45 PRDCILLKSGTRKKDLPFIAKVGALWEN 72 (194)
Q Consensus 45 vGD~Vlv~~~~~~~~~p~IarI~~i~ed 72 (194)
+||.|.|.++. ..-.+|+|.++..+
T Consensus 1 ~Gd~V~V~~G~---~~G~~G~I~~i~~~ 25 (32)
T PF00467_consen 1 VGDTVKVISGP---FKGKIGKIVEIDRS 25 (32)
T ss_dssp TTSEEEESSST---TTTEEEEEEEEETT
T ss_pred CCCEEEEeEcC---CCCceEEEEEEECC
Confidence 59999999996 67799999999654
No 39
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=60.25 E-value=12 Score=27.15 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=30.2
Q ss_pred EecCCEEEEEcCCCCCCCCeEEEEeeEe--e------cCCCCceEEEEEEee
Q psy10248 43 IQPRDCILLKSGTRKKDLPFIAKVGALW--E------NPEDGEMMVSLLWYY 86 (194)
Q Consensus 43 ~~vGD~Vlv~~~~~~~~~p~IarI~~i~--e------d~~~g~~~v~v~Wfy 86 (194)
+++||.|+.+-.+ -++|-|+|+.-- . ..+.....+-|+||-
T Consensus 1 f~~GDlVwaK~~G---yPwWPA~V~~~~~~p~~~l~~~~~~~~~~~~V~FFg 49 (93)
T cd05840 1 FQPGDRVLAKVKG---FPAWPAIVVPEEMLPDSVLKGKKKKNKRTYPVMFFP 49 (93)
T ss_pred CCCCCEEEEeCCC---CCCCCEEECChHHCCHHHHhcccCCCCCeEEEEEeC
Confidence 4789999999986 899999998621 1 112345778888884
No 40
>PF08940 DUF1918: Domain of unknown function (DUF1918); InterPro: IPR015035 This domain is found in various hypothetical bacterial proteins, and has no known function. ; PDB: 2A7Y_A.
Probab=58.44 E-value=16 Score=24.57 Aligned_cols=39 Identities=13% Similarity=0.113 Sum_probs=25.3
Q ss_pred ecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEe
Q psy10248 44 QPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWY 85 (194)
Q Consensus 44 ~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~Wf 85 (194)
++||.+.+.+.. -..+...|.|.++--. +|..=..|+|-
T Consensus 4 ~vGD~lvv~g~~-vg~~~r~GeIveV~g~--dG~PPY~VRw~ 42 (58)
T PF08940_consen 4 SVGDRLVVHGRT-VGQPDRHGEIVEVRGP--DGSPPYLVRWD 42 (58)
T ss_dssp -TTEEEEES-TT-TS--EEEEEEEE-S-S--SS-S-EEEEET
T ss_pred CCCCEEEEcCCc-CCCCCcEeEEEEEECC--CCCCCEEEEec
Confidence 589999998864 3578899999999764 67888889995
No 41
>PRK10708 hypothetical protein; Provisional
Probab=57.69 E-value=47 Score=22.26 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=28.7
Q ss_pred ecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEE-------EEEEeeccCcCC
Q psy10248 44 QPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMV-------SLLWYYRPEHTE 92 (194)
Q Consensus 44 ~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v-------~v~WfyRpeE~~ 92 (194)
+++|.|.|++.+ .+.-.+.|..+-.- ..|.+++ ...||+...+-.
T Consensus 2 kvnD~VtVKTDG---~~rR~G~iLavE~F-~EG~MyLvaL~dYP~GiWFFNE~~~~ 53 (62)
T PRK10708 2 KVNDRVTVKTDG---GPRRPGVVLAVEEF-SEGTMYLVSLEDYPLGIWFFNEAGHQ 53 (62)
T ss_pred ccccEEEEecCC---CccccceEEEEeec-cCcEEEEEEcCcCCCceEEEeccCCC
Confidence 689999999987 45555666555332 2455544 357998755443
No 42
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=57.55 E-value=48 Score=22.22 Aligned_cols=46 Identities=13% Similarity=0.276 Sum_probs=28.5
Q ss_pred ecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEE-------EEEEeeccCcCCC
Q psy10248 44 QPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMV-------SLLWYYRPEHTEQ 93 (194)
Q Consensus 44 ~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v-------~v~WfyRpeE~~~ 93 (194)
+++|.|.|++.+ .+.--|.|..+-+- ..|.+++ ...||+...+-..
T Consensus 2 kvnD~VtVKTDG---~~rR~G~ilavE~F-~EG~MYLvaL~dYP~GiWFFNE~~~~d 54 (62)
T PF10781_consen 2 KVNDRVTVKTDG---GPRREGVILAVEPF-NEGTMYLVALEDYPAGIWFFNEKDSPD 54 (62)
T ss_pred ccccEEEEecCC---cccccceEEEEeec-cCcEEEEEEcCcCCcceEEEecCCCCC
Confidence 689999999987 44455555554332 2455444 3579987555443
No 43
>KOG1568|consensus
Probab=56.94 E-value=47 Score=27.02 Aligned_cols=102 Identities=22% Similarity=0.231 Sum_probs=59.6
Q ss_pred eeecCCCCCCCcccccccc-cEEe-----eCCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeecc
Q psy10248 15 FKYGTSTSDEHPVVRNCYP-AMRH-----IQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRP 88 (194)
Q Consensus 15 ~~~g~~~~~~~~~~~~~Y~-~~~~-----~dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRp 88 (194)
.-||+.....-......+. .... ..+..+..||.|.+++.. .++..+|-||..+ .|..+.. +-++
T Consensus 35 ~v~G~smqPtlnP~~~~~~~d~Vll~k~~v~n~~~~rGDiVvl~sP~-~p~~~~iKRv~al-----egd~~~t---~~~k 105 (174)
T KOG1568|consen 35 QVYGSSMQPTLNPTMNTNEKDTVLLRKWNVKNRKVSRGDIVVLKSPN-DPDKVIIKRVAAL-----EGDIMVT---EDEK 105 (174)
T ss_pred EEecCcCCCccCCCcccccccEEEEEeeccccceeccCCEEEEeCCC-Chhheeeeeeecc-----cccEecc---CCCC
Confidence 3467666665533333332 1111 134667899999999876 4678899999998 3444444 4445
Q ss_pred CcCCCCCC-C----CCCCCceEEeCCccccccceecceeEEe
Q psy10248 89 EHTEQGTS-Y----RDNKDEIFASRHRDINSVACIEDKCYVL 125 (194)
Q Consensus 89 eE~~~~~~-~----~~~~~ELF~S~~~D~~~v~~I~gKc~Vl 125 (194)
+++-.-.. . --...+=|=|+.+--++..-|.|++.=.
T Consensus 106 ~~~v~vpkghcWVegDn~~hs~DSntFGPVS~gli~grai~i 147 (174)
T KOG1568|consen 106 EEPVVVPKGHCWVEGDNQKHSYDSNTFGPVSTGLIVGRAIYI 147 (174)
T ss_pred CCceecCCCcEEEecCCcccccccCccCCcchhheeeeEEEE
Confidence 55432111 0 0122345556667778899999997543
No 44
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=55.03 E-value=15 Score=25.27 Aligned_cols=41 Identities=17% Similarity=0.084 Sum_probs=29.2
Q ss_pred EecCCEEEEEcCCCCCCCCeEEEEeeEeecC--CCCceEEEEEEee
Q psy10248 43 IQPRDCILLKSGTRKKDLPFIAKVGALWENP--EDGEMMVSLLWYY 86 (194)
Q Consensus 43 ~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~--~~g~~~v~v~Wfy 86 (194)
|++||.|..+-.+ -+.|-|+|....+.. ......+.|.||-
T Consensus 1 f~~GdlVWaK~~g---~pwWPa~V~~~~~~~~~~~~~~~~~V~Ffg 43 (86)
T PF00855_consen 1 FRPGDLVWAKLKG---YPWWPARVCDPDEKSKKKRKDGHVLVRFFG 43 (86)
T ss_dssp -STTEEEEEEETT---SEEEEEEEEECCHCTSCSSSSTEEEEEETT
T ss_pred CCCCCEEEEEeCC---CCCCceEEeecccccccCCCCCEEEEEecC
Confidence 5789999999976 789999999986431 1234566666664
No 45
>PF10383 Clr2: Transcription-silencing protein Clr2 ; InterPro: IPR018839 Clr2 (cryptic loci regulator) is a chromatin silencing protein, one of a quartet of proteins forming the core of SHREC, a multienzyme effector complex that mediates hetero-chromatic transcriptional gene silencing in fission yeast []. Clr2 does not have any obvious well-conserved domains but, along with the other core proteins, binds to the histone deacetylase Clr3, and on its own might also have a role in chromatin organisation at the cnt domain, the site of kinetochore assembly.
Probab=53.84 E-value=73 Score=24.72 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=29.9
Q ss_pred ccccEEeeCCEEEecCCEEEEEcCCC---------CCCCCeEEEEeeEeecC
Q psy10248 31 CYPAMRHIQGDIIQPRDCILLKSGTR---------KKDLPFIAKVGALWENP 73 (194)
Q Consensus 31 ~Y~~~~~~dg~~~~vGD~Vlv~~~~~---------~~~~p~IarI~~i~ed~ 73 (194)
+|+.+=. +-+.|.+||.|-|++.+. ..+...|..|.+|..+.
T Consensus 2 ~y~Gifl-GAE~I~vGD~VRl~~~~~~~~~~~~~~~~~~tdvMvI~~I~~~~ 52 (139)
T PF10383_consen 2 YYRGIFL-GAEMIWVGDAVRLKPLNASPSPNQSDGNPDVTDVMVIDEIQLRL 52 (139)
T ss_pred eECeEEE-eeEEEEeCCEEEECccCCCcccccccCCCCceeEEEEeEEEEec
Confidence 6777774 679999999999954321 23455788888887653
No 46
>KOG2133|consensus
Probab=48.36 E-value=16 Score=37.28 Aligned_cols=85 Identities=18% Similarity=0.319 Sum_probs=62.0
Q ss_pred CCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCC-C--------C---------CCCCC
Q psy10248 39 QGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQ-G--------T---------SYRDN 100 (194)
Q Consensus 39 dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~-~--------~---------~~~~~ 100 (194)
++..|.++|.|.++... ..+..||.|..+-....+....++.-.++|++++.. + + ...-.
T Consensus 142 ~e~~y~~~~~l~~~v~~--~~p~lia~~~~~~~~Kr~~~~~~k~s~~~r~~d~Pet~y~~~m~pe~Ar~e~~P~~~pq~~ 219 (1229)
T KOG2133|consen 142 DETLYDLRDSLFVEVSQ--PEPYLIAAICGFKYTKRDDRQVVKLSFYFRADDIPETGYLNLMKPERARLEINPHLCPQPL 219 (1229)
T ss_pred cchhhhhhhhhhhhhcc--CCccccccccCccccccccccccccccccccccCcccccccccCchhhhhccCCccCCCcc
Confidence 56789999999999886 356667777666444212356778889999999982 2 0 11235
Q ss_pred CCceEEeCCcc-ccccceecceeEEe
Q psy10248 101 KDEIFASRHRD-INSVACIEDKCYVL 125 (194)
Q Consensus 101 ~~ELF~S~~~D-~~~v~~I~gKc~Vl 125 (194)
.+|+|.+.-.+ .-|..|-.|||.+.
T Consensus 220 sq~l~~s~l~~i~qppscp~gk~~~~ 245 (1229)
T KOG2133|consen 220 SQELFNSELQGITQPPSCPRGKGIAE 245 (1229)
T ss_pred hhhhhcccccCCCCCCcCCCCCceEE
Confidence 67888888774 47999999999997
No 47
>cd05836 N_Pac_NP60 The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha. In a variety of cell lines, NP60 has been shown to localize to the nucleus. In addition to the PWWP domain, NP60 also contains an AT-hook and a C-terminal NAD-binding domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=46.78 E-value=25 Score=25.03 Aligned_cols=43 Identities=7% Similarity=0.050 Sum_probs=30.7
Q ss_pred EecCCEEEEEcCCCCCCCCeEEEEeeEeecCC---CCceEEEEEEeecc
Q psy10248 43 IQPRDCILLKSGTRKKDLPFIAKVGALWENPE---DGEMMVSLLWYYRP 88 (194)
Q Consensus 43 ~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~---~g~~~v~v~WfyRp 88 (194)
+++||.|.-+-.+ -++|-|+|.+-..+.. .....+-|+||=.+
T Consensus 1 f~~GDlVwaK~~g---~P~WPa~V~~~~~~~~~~~~~~~~~~V~FFG~~ 46 (86)
T cd05836 1 LKLGDLVWAKMKG---FPPWPGRIVKPPKDLKKPRGKAKCFFVFFFGSE 46 (86)
T ss_pred CCCCCEEEEeCCC---CCCCCEEEechhhhcccccCCCCeEEEEEeCCC
Confidence 4789999999886 8999999998654311 11355777777644
No 48
>PRK12281 rplX 50S ribosomal protein L24; Reviewed
Probab=44.71 E-value=58 Score=22.81 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=23.9
Q ss_pred EEecCCEEEEEcCCCCCCCCeEEEEeeEeec
Q psy10248 42 IIQPRDCILLKSGTRKKDLPFIAKVGALWEN 72 (194)
Q Consensus 42 ~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed 72 (194)
.++.||.|.|-++. +.--+|+|.++...
T Consensus 6 ~I~kGD~V~Vi~G~---dKGK~G~V~~V~~~ 33 (76)
T PRK12281 6 KVKKGDMVKVIAGD---DKGKTGKVLAVLPK 33 (76)
T ss_pred cccCCCEEEEeEcC---CCCcEEEEEEEEcC
Confidence 58999999999986 66788999999765
No 49
>CHL00141 rpl24 ribosomal protein L24; Validated
Probab=39.68 E-value=72 Score=22.68 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=24.2
Q ss_pred EEEecCCEEEEEcCCCCCCCCeEEEEeeEeec
Q psy10248 41 DIIQPRDCILLKSGTRKKDLPFIAKVGALWEN 72 (194)
Q Consensus 41 ~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed 72 (194)
..++.||.|.|-++. +.--+|+|.++..+
T Consensus 7 ~~I~~GD~V~Vi~G~---dKGK~G~V~~V~~~ 35 (83)
T CHL00141 7 MHVKIGDTVKIISGS---DKGKIGEVLKIIKK 35 (83)
T ss_pred CcccCCCEEEEeEcC---CCCcEEEEEEEEcC
Confidence 368999999999986 56688999999765
No 50
>PRK00004 rplX 50S ribosomal protein L24; Reviewed
Probab=37.74 E-value=74 Score=23.58 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=24.0
Q ss_pred EEecCCEEEEEcCCCCCCCCeEEEEeeEeec
Q psy10248 42 IIQPRDCILLKSGTRKKDLPFIAKVGALWEN 72 (194)
Q Consensus 42 ~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed 72 (194)
.|+.||.|.|-++. +.--+|+|.++...
T Consensus 4 ~i~kGD~V~Vi~G~---dKGk~G~V~~V~~~ 31 (105)
T PRK00004 4 KIKKGDTVIVIAGK---DKGKRGKVLKVLPK 31 (105)
T ss_pred cccCCCEEEEeEcC---CCCcEEEEEEEEcC
Confidence 48899999999986 67789999999765
No 51
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated
Probab=32.31 E-value=1.3e+02 Score=23.17 Aligned_cols=30 Identities=13% Similarity=-0.082 Sum_probs=24.5
Q ss_pred CEEEecCCEEEEEcCCCCCCCCeEEEEeeEeec
Q psy10248 40 GDIIQPRDCILLKSGTRKKDLPFIAKVGALWEN 72 (194)
Q Consensus 40 g~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed 72 (194)
...|+.||.|.|-++. ..--.|+|.++...
T Consensus 43 ~~~IkkGD~V~VisG~---~KGk~GkV~~V~~~ 72 (120)
T PRK01191 43 SLPVRKGDTVKVMRGD---FKGEEGKVVEVDLK 72 (120)
T ss_pred cceEeCCCEEEEeecC---CCCceEEEEEEEcC
Confidence 4579999999999996 45577999999654
No 52
>TIGR02754 sod_Ni_protease nickel-type superoxide dismutase maturation protease. Members of this protein family are apparent proteases encoded adjacent to the genes for a nickel-type superoxide dismutase. This family belongs to the same larger family (see Pfam model pfam00717) as signal peptidase I, an unusual serine protease suggested to have a Ser/Lys catalytic dyad.
Probab=31.35 E-value=1.8e+02 Score=20.04 Aligned_cols=12 Identities=8% Similarity=-0.092 Sum_probs=7.9
Q ss_pred cccccceeccee
Q psy10248 111 DINSVACIEDKC 122 (194)
Q Consensus 111 D~~~v~~I~gKc 122 (194)
..++...|.|++
T Consensus 77 g~v~~~~I~G~v 88 (90)
T TIGR02754 77 GPVPRSLLLGKV 88 (90)
T ss_pred CCCcHHHEEEEE
Confidence 345667777775
No 53
>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle. This model recognizes bacterial and organellar forms of ribosomal protein L24. It excludes eukaryotic and archaeal forms, designated L26 in eukaryotes.
Probab=31.04 E-value=1.1e+02 Score=22.78 Aligned_cols=28 Identities=25% Similarity=0.176 Sum_probs=23.7
Q ss_pred EEecCCEEEEEcCCCCCCCCeEEEEeeEeec
Q psy10248 42 IIQPRDCILLKSGTRKKDLPFIAKVGALWEN 72 (194)
Q Consensus 42 ~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed 72 (194)
.++.||.|.|-++. +.--+|+|.++...
T Consensus 3 ~ikkGD~V~Vi~G~---dKGK~G~V~~V~~~ 30 (104)
T TIGR01079 3 KIKKGDTVKVISGK---DKGKRGKVLKVLPK 30 (104)
T ss_pred cccCCCEEEEeEcC---CCCcEEEEEEEEcC
Confidence 47899999999986 67789999999765
No 54
>COG0250 NusG Transcription antiterminator [Transcription]
Probab=28.08 E-value=1.4e+02 Score=24.19 Aligned_cols=47 Identities=26% Similarity=0.323 Sum_probs=37.1
Q ss_pred CEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcC
Q psy10248 40 GDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHT 91 (194)
Q Consensus 40 g~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~ 91 (194)
...+.+||.|-|.+++ -..+.|+|+++-.+ .+...+.+.=|-|+--+
T Consensus 121 ~~~~e~Gd~VrI~~Gp---Fa~f~g~V~evd~e--k~~~~v~v~ifgr~tPV 167 (178)
T COG0250 121 KVDFEPGDVVRIIDGP---FAGFKAKVEEVDEE--KGKLKVEVSIFGRPTPV 167 (178)
T ss_pred cccCCCCCEEEEeccC---CCCccEEEEEEcCc--CcEEEEEEEEeCCceEE
Confidence 4679999999999997 66799999999654 46677788777776544
No 55
>cd05837 MSH6_like The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS. The PWWP domain of histone-lysine N-methyltransferase, also known as Nuclear SET domain-containing protein 3, is also included. Mutations in MSH6 have been linked to increased cancer susceptibility, particularly in hereditary nonpolyposis colorectal cancer in humans. The role of the PWWP domain in MSH6 is not clear; MSH6 orthologs found in S. cerevisiae, Caenorhabditis elegans and Arabidopsis thaliana lack the PWWP domain. Histone methyltransferases (HMTases) induce the posttranslational methylation of lysine residues in histones and play a role in apoptosis. In the HMTase Whistle, the PWWP domain is necessary for HMTase activity. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain pro
Probab=27.47 E-value=1e+02 Score=22.82 Aligned_cols=44 Identities=9% Similarity=-0.158 Sum_probs=31.8
Q ss_pred EEecCCEEEEEcCCCCCCCCeEEEEeeEeec--------CCCCceEEEEEEeecc
Q psy10248 42 IIQPRDCILLKSGTRKKDLPFIAKVGALWEN--------PEDGEMMVSLLWYYRP 88 (194)
Q Consensus 42 ~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed--------~~~g~~~v~v~WfyRp 88 (194)
.|.+||-|..+-.+ -+.|-|+|..--.. .......+.|+||-..
T Consensus 2 ~~~~GdlVWaK~~g---~PwWPa~V~~~~~~~~~~~~~~~~~~~~~~~V~FFG~~ 53 (110)
T cd05837 2 KYQVGDLVWAKVSG---YPWWPCMVCSDPLLGTYTKTKRNKRKPRQYHVQFFGDN 53 (110)
T ss_pred CCCCCCEEEEeCCC---CCCCCEEEecccccchhhhhhhccCCCCeEEEEEcCCC
Confidence 47899999999986 78999999852110 1123577888888754
No 56
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=27.02 E-value=69 Score=26.85 Aligned_cols=28 Identities=14% Similarity=0.148 Sum_probs=16.0
Q ss_pred EEecCCEEEEEcCCCCCCCCeEEEEeeEee
Q psy10248 42 IIQPRDCILLKSGTRKKDLPFIAKVGALWE 71 (194)
Q Consensus 42 ~~~vGD~Vlv~~~~~~~~~p~IarI~~i~e 71 (194)
.+++||||++...+ ......++|.++-.
T Consensus 105 ~V~~Gd~v~~~~~~--~~~~~~~~V~~v~~ 132 (217)
T PF01079_consen 105 DVRVGDCVLVSDEG--GGKLRPSRVVRVST 132 (217)
T ss_dssp G--TT-EEEEE-TT--T--EEEEEEEEEEE
T ss_pred hCCCCCEEEEEEcC--CCcEEEEEEEEEEE
Confidence 47999999995443 46677788887754
No 57
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=26.97 E-value=44 Score=24.63 Aligned_cols=42 Identities=14% Similarity=0.332 Sum_probs=25.2
Q ss_pred CEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCC
Q psy10248 47 DCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTE 92 (194)
Q Consensus 47 D~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~ 92 (194)
.-.|+.++. .. .+-.|.++.++-......|+|.|||.++|-.
T Consensus 50 ~L~YfNTSS---sk-~l~~i~~~Le~~~~~g~~V~v~Wyyd~dD~~ 91 (99)
T PF09345_consen 50 KLSYFNTSS---SK-ALMDIFDLLEDAAQKGGKVTVNWYYDEDDED 91 (99)
T ss_pred EEEEEecHh---HH-HHHHHHHHHHHHHhcCCcEEEEEEECCCCch
Confidence 456777764 22 3333333333323456889999999988754
No 58
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=26.07 E-value=1.1e+02 Score=20.02 Aligned_cols=32 Identities=6% Similarity=0.096 Sum_probs=23.0
Q ss_pred CEEEecCCEEEEEcCCCCCCCCeEEEEeeEeec
Q psy10248 40 GDIIQPRDCILLKSGTRKKDLPFIAKVGALWEN 72 (194)
Q Consensus 40 g~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed 72 (194)
.-+++.||.|++.+ ......+..++|.+|+..
T Consensus 10 sG~l~~gd~v~~~~-~~~~~~~~~~~I~~i~~~ 41 (74)
T PF03144_consen 10 SGTLKKGDKVRVLP-NGTGKKGQVVKIKSIFMF 41 (74)
T ss_dssp ESEEETTEEEEEES-TTTTEECEEEEEEEEEET
T ss_pred EeEEcCCCEEEECc-cCCcceeeeeeccccccc
Confidence 35699999999977 312234578888888764
No 59
>COG4014 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.05 E-value=1.8e+02 Score=21.33 Aligned_cols=41 Identities=22% Similarity=0.409 Sum_probs=29.1
Q ss_pred EecCCEE-EEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEE---EeeccCcC
Q psy10248 43 IQPRDCI-LLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLL---WYYRPEHT 91 (194)
Q Consensus 43 ~~vGD~V-lv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~---WfyRpeE~ 91 (194)
..|||.| |+.++ -+++|.+|-++. +|+.+|.+- -+||++=+
T Consensus 9 ~~VG~avrYvnTg-------TvgrV~dIkkdE-dG~~WV~LdstdLwYre~~l 53 (97)
T COG4014 9 DKVGDAVRYVNTG-------TVGRVVDIKKDE-DGDIWVVLDSTDLWYREHYL 53 (97)
T ss_pred hhhcceEEEeecC-------ceeeEEEEEeec-CCceEEEEecCCceecccce
Confidence 3489987 56665 689999999884 888888762 35555433
No 60
>TIGR00922 nusG transcription termination/antitermination factor NusG. Archaeal proteins once termed NusG share the KOW domain but are actually a ribosomal protein corresponding to L24p in bacterial and L26e in eukaryotes (TIGR00405).
Probab=24.53 E-value=1.8e+02 Score=22.70 Aligned_cols=46 Identities=13% Similarity=0.091 Sum_probs=35.3
Q ss_pred EEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcC
Q psy10248 41 DIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHT 91 (194)
Q Consensus 41 ~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~ 91 (194)
..+++||.|.|.+++ -.-+.|.|.++... .+...+.+.+|-+..-+
T Consensus 118 ~~~~~G~~V~I~~Gp---f~G~~g~v~~~~~~--~~r~~V~v~~~g~~~~v 163 (172)
T TIGR00922 118 IDFEVGEQVRVNDGP---FANFTGTVEEVDYE--KSKLKVSVSIFGRETPV 163 (172)
T ss_pred cCCCCCCEEEEeecC---CCCcEEEEEEEcCC--CCEEEEEEEECCCceEE
Confidence 347899999999986 56689999998432 46788888888776544
No 61
>PF08921 DUF1904: Domain of unknown function (DUF1904); InterPro: IPR015017 This entry represents a family of hypothetical bacterial proteins. ; PDB: 1U9D_B.
Probab=24.01 E-value=29 Score=26.02 Aligned_cols=18 Identities=28% Similarity=0.682 Sum_probs=10.8
Q ss_pred CceEEEEEEeeccCcCCC
Q psy10248 76 GEMMVSLLWYYRPEHTEQ 93 (194)
Q Consensus 76 g~~~v~v~WfyRpeE~~~ 93 (194)
+-.+|.|.||-|+.|+..
T Consensus 54 ~~pfVEV~WF~R~qe~qd 71 (108)
T PF08921_consen 54 GYPFVEVLWFDRGQEVQD 71 (108)
T ss_dssp ---EEEEEES---HHHHH
T ss_pred cceeEEEEEecCCHHHHH
Confidence 456899999999999874
No 62
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=23.87 E-value=1.2e+02 Score=22.76 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=24.1
Q ss_pred CEEEecCCEEEEEcCCCCCCCCeEEEEeeEeec
Q psy10248 40 GDIIQPRDCILLKSGTRKKDLPFIAKVGALWEN 72 (194)
Q Consensus 40 g~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed 72 (194)
+.++++||+|.+-+. +.|-+.+|..|...
T Consensus 24 ~GtL~~GD~Iv~g~~----~Gpi~tkVRaLl~~ 52 (110)
T cd03703 24 DGTLREGDTIVVCGL----NGPIVTKVRALLKP 52 (110)
T ss_pred CCeEecCCEEEEccC----CCCceEEEeEecCC
Confidence 345999999999776 46789999999876
No 63
>PF11132 SplA: Transcriptional regulator protein (SplA); InterPro: IPR022608 The SplA protein functions in trans as a negative regulator of the level of splB-lacZ expression in the developing forespore [].
Probab=23.74 E-value=61 Score=22.78 Aligned_cols=26 Identities=8% Similarity=0.052 Sum_probs=18.5
Q ss_pred EEEecCCEEEEEcCCCCCCCCeEEEEee
Q psy10248 41 DIIQPRDCILLKSGTRKKDLPFIAKVGA 68 (194)
Q Consensus 41 ~~~~vGD~Vlv~~~~~~~~~p~IarI~~ 68 (194)
..+++||.|||---+ +--+-||.|.+
T Consensus 4 ~~~~~GD~VyViYrN--PHt~~VanIqe 29 (75)
T PF11132_consen 4 KPYHAGDIVYVIYRN--PHTQDVANIQE 29 (75)
T ss_pred cccCCCCEEEEEEcC--CCCccccccch
Confidence 468999999986654 35667777754
No 64
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=23.65 E-value=2.6e+02 Score=21.31 Aligned_cols=42 Identities=24% Similarity=0.014 Sum_probs=30.7
Q ss_pred EEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCc
Q psy10248 42 IIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEH 90 (194)
Q Consensus 42 ~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE 90 (194)
.+++||.|.|.+++ -.-+.|+|.++-. ....+.+.+.-+.-.
T Consensus 86 ~~~~Gd~V~I~~GP---f~G~~g~v~~~d~----~k~~v~v~l~~~~~~ 127 (145)
T TIGR00405 86 SIKKGDIVEIISGP---FKGERAKVIRVDE----SKEEVTLELIEAAVP 127 (145)
T ss_pred ccCCCCEEEEeecC---CCCCeEEEEEEcC----CCCEEEEEEEEcCcc
Confidence 48999999999996 5678999999833 223666666665444
No 65
>TIGR01956 NusG_myco NusG family protein. This model represents a family of Mycoplasma proteins orthologous to the bacterial transcription termination/antitermination factor NusG. These sequences from Mycoplasma are notably diverged (long branches in a Neighbor-joining phylogenetic tree) from the bacterial species. And although NusA and ribosomal protein S10 (NusE) appear to be present, NusB may be absent in Mycoplasmas calling into question whether these species have a functional Nus system including this family as a member.
Probab=23.40 E-value=1.9e+02 Score=25.15 Aligned_cols=45 Identities=7% Similarity=0.080 Sum_probs=35.4
Q ss_pred EEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcC
Q psy10248 42 IIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHT 91 (194)
Q Consensus 42 ~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~ 91 (194)
.+.+||.|.|..++ -.-+.|.|.++-.+ .+...|.+.+|-|.--+
T Consensus 205 ~f~vGd~VrI~dGP---F~GfeG~I~eid~~--k~Rv~VlV~IfGR~TpV 249 (258)
T TIGR01956 205 KFRVGNFVKIVDGP---FKGIVGKIKKIDQE--KKKAIVEVEILGKSVDV 249 (258)
T ss_pred CCCCCCEEEEEecC---CCCcEEEEEEEeCC--CCEEEEEEEecCCcEEE
Confidence 37899999999996 56789999999543 46788888888875433
No 66
>PTZ00194 60S ribosomal protein L26; Provisional
Probab=23.03 E-value=2e+02 Score=22.75 Aligned_cols=30 Identities=17% Similarity=0.208 Sum_probs=23.8
Q ss_pred CEEEecCCEEEEEcCCCCCCCCeEEEEeeEeec
Q psy10248 40 GDIIQPRDCILLKSGTRKKDLPFIAKVGALWEN 72 (194)
Q Consensus 40 g~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed 72 (194)
...|+.||.|.|-++. ..--.|+|.++...
T Consensus 44 s~~IkkGD~V~Vi~Gk---~KGk~GkV~~V~~k 73 (143)
T PTZ00194 44 SMPVRKDDEVMVVRGH---HKGREGKVTAVYRK 73 (143)
T ss_pred cceeecCCEEEEecCC---CCCCceEEEEEEcC
Confidence 4579999999999997 44566999998654
No 67
>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.
Probab=22.63 E-value=1.1e+02 Score=19.86 Aligned_cols=25 Identities=4% Similarity=-0.025 Sum_probs=16.0
Q ss_pred EEecCCEEEEEcCCCCCCCCeEEEEeeEee
Q psy10248 42 IIQPRDCILLKSGTRKKDLPFIAKVGALWE 71 (194)
Q Consensus 42 ~~~vGD~Vlv~~~~~~~~~p~IarI~~i~e 71 (194)
..-+||.|.+...+ ++. +.|+++.+
T Consensus 37 ~~~VGD~V~~~~~~--~~~---~~I~~vl~ 61 (68)
T cd04466 37 PPAVGDRVEFEPED--DGE---GVIEEILP 61 (68)
T ss_pred CCCCCcEEEEEECC--CCc---EEEEEEec
Confidence 46799999997543 122 45666654
No 68
>PF07154 DUF1392: Protein of unknown function (DUF1392); InterPro: IPR009824 This family consists of several hypothetical cyanobacterial proteins of around 150 residues in length, which seem to be specific to Anabaena species. The function of this family is unknown.
Probab=22.20 E-value=2.7e+02 Score=22.14 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=27.9
Q ss_pred CCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCC
Q psy10248 39 QGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTE 92 (194)
Q Consensus 39 dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~ 92 (194)
..-.+++||-|.+...+ +.|-.-.|.-+ ..++-.|||-=|=.+
T Consensus 84 ~kp~F~LGd~V~~~f~~---~~pkqRlIlGv--------~lv~~~W~Y~VE~~S 126 (150)
T PF07154_consen 84 QKPAFRLGDRVEFRFYS---DGPKQRLILGV--------FLVNNSWFYAVEWRS 126 (150)
T ss_pred cCCceecCCEEEEEecC---CCCceEEEEEE--------EEecCceEEEEEEeC
Confidence 55679999999998864 34444455444 334456888766544
No 69
>PF09378 HAS-barrel: HAS barrel domain; InterPro: IPR018538 The HAS barrel is named after HerA-ATP Synthase. In ATP synthases, this domain is implicated in the assembly of the catalytic toroid and docking of accessory subunits, such as the subunit of the ATP synthase complex. Similar roles in docking of the functional partner, the NurA nuclease, and assembly of the HerA toroid complex appear likely for the HAS-barrel of the HerA family []. ; PDB: 3OAA_I.
Probab=21.33 E-value=95 Score=21.33 Aligned_cols=30 Identities=3% Similarity=0.113 Sum_probs=20.4
Q ss_pred CCEEEecCCEEEEEcCCCCCCCCeEEEEeeEee
Q psy10248 39 QGDIIQPRDCILLKSGTRKKDLPFIAKVGALWE 71 (194)
Q Consensus 39 dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~e 71 (194)
+....++||+|.+...+ ...-+|+|.++..
T Consensus 19 ~~~~v~~GeyV~i~~~~---~~~vlG~V~~i~~ 48 (91)
T PF09378_consen 19 PSKDVRVGEYVVIEYDD---GEKVLGMVTSISR 48 (91)
T ss_dssp E-TT-BTTEEEEES-------TTEEEEEEEEES
T ss_pred CCCCCCcCeEEEEEEec---hhhhhhhhheeEE
Confidence 34479999999999874 5678999999954
No 70
>cd06530 S26_SPase_I The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are translocated across biological membranes. The bacterial signal peptidase I, which is the most intensively studied, has two N-terminal transmembrane segments inserted in the plasma membrane and a hydrophilic, C-terminal catalytic region that is located in the periplasmic space. Although the bacterial signal peptidase I is monomeric, signal peptidases of eukaryotic cells commonly function as oligomeric complexes containing two divergent copies of the catalytic monomer. These are the IMP1 and IMP2 signal peptidases of the mitochondrial inner membrane that remove leader peptides from nuclear- and mitochondrial-encoded proteins. Also, two components of the endoplasmic reticulum signal peptidase in mammals (18-kDa and 21-kDa
Probab=21.31 E-value=1.5e+02 Score=20.09 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=19.6
Q ss_pred EEecCCEEEEEcCCCCCCCCeEEEEeeEe
Q psy10248 42 IIQPRDCILLKSGTRKKDLPFIAKVGALW 70 (194)
Q Consensus 42 ~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ 70 (194)
.++.||.|+++.... ....+|.||..+|
T Consensus 31 ~~~~GDiv~~~~~~~-~~~~~vkRv~~~~ 58 (85)
T cd06530 31 EPKRGDVVVFKSPGD-PGKPIIKRVIGYF 58 (85)
T ss_pred CCCCCCEEEEeCCCC-CCCEEEEEEEEEE
Confidence 477888888887651 2467888887744
No 71
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=20.65 E-value=1.4e+02 Score=19.05 Aligned_cols=27 Identities=19% Similarity=0.037 Sum_probs=20.9
Q ss_pred EEecCCEEEEEcCCCCCCCCeEEEEeeEe
Q psy10248 42 IIQPRDCILLKSGTRKKDLPFIAKVGALW 70 (194)
Q Consensus 42 ~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ 70 (194)
.+++||.|.+.... .+.-|-|+|+++-
T Consensus 2 ~~~~G~~Ve~~~~~--~~~W~~a~V~~~~ 28 (61)
T smart00743 2 DFKKGDRVEVFSKE--EDSWWEAVVTKVL 28 (61)
T ss_pred CcCCCCEEEEEECC--CCEEEEEEEEEEC
Confidence 37899999998854 3556779999984
No 72
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=20.49 E-value=4.5e+02 Score=22.60 Aligned_cols=72 Identities=11% Similarity=0.227 Sum_probs=42.8
Q ss_pred CceeeeecCCCCCCCcccccccccEEee---------CC--EEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceE
Q psy10248 11 DPYYFKYGTSTSDEHPVVRNCYPAMRHI---------QG--DIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMM 79 (194)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~~~Y~~~~~~---------dg--~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~ 79 (194)
-+|.-+..+..+.+.+....-++.+.++ +| -.++.|+++|+-++. .|.-.+....-
T Consensus 62 ~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~G~th~l~eggyaylPpgs-------------~~~~~N~~~~~ 128 (264)
T COG3257 62 VQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAEGKTHALREGGYAYLPPGS-------------GWTLRNAQKED 128 (264)
T ss_pred hhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEcCeEEEeccCCeEEeCCCC-------------cceEeeccCCc
Confidence 3455666555544444444444444332 33 357888999998874 23222234566
Q ss_pred EEEEEeeccCcCCCCC
Q psy10248 80 VSLLWYYRPEHTEQGT 95 (194)
Q Consensus 80 v~v~WfyRpeE~~~~~ 95 (194)
+++.||-++-+...|-
T Consensus 129 ~rfhw~rk~Y~~VdG~ 144 (264)
T COG3257 129 SRFHWIRKRYQPVEGV 144 (264)
T ss_pred eEEEEEeecceeecCc
Confidence 8899999988876653
No 73
>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=20.34 E-value=2e+02 Score=20.02 Aligned_cols=29 Identities=14% Similarity=-0.069 Sum_probs=20.6
Q ss_pred CEEEecCCEEEEEcCCCCCCCCeEEEEeeEee
Q psy10248 40 GDIIQPRDCILLKSGTRKKDLPFIAKVGALWE 71 (194)
Q Consensus 40 g~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~e 71 (194)
...++.||.|+|...+ ...-=|+|+..+.
T Consensus 36 ~iwI~~GD~V~Ve~~~---~d~~kg~Iv~r~~ 64 (77)
T cd05793 36 RVWINEGDIVLVAPWD---FQDDKADIIYKYT 64 (77)
T ss_pred cEEEcCCCEEEEEecc---ccCCEEEEEEEcC
Confidence 4779999999998765 3445666666554
Done!