Query psy10248
Match_columns 194
No_of_seqs 209 out of 676
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 21:39:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10248.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10248hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w4s_A Polybromo, polybromo 1 100.0 5.3E-35 1.8E-39 235.3 9.4 133 26-193 11-143 (174)
2 3swr_A DNA (cytosine-5)-methyl 99.9 1.8E-24 6.1E-29 211.6 15.8 147 19-193 134-282 (1002)
3 3av4_A DNA (cytosine-5)-methyl 99.9 1.6E-24 5.4E-29 216.4 11.5 155 12-194 439-595 (1330)
4 4dov_A ORC1, origin recognitio 99.9 4.1E-22 1.4E-26 157.8 14.9 126 28-188 20-158 (163)
5 3swr_A DNA (cytosine-5)-methyl 99.8 8.4E-21 2.9E-25 185.7 12.9 135 28-194 321-503 (1002)
6 4ft4_B DNA (cytosine-5)-methyl 99.8 2.5E-19 8.5E-24 171.1 11.4 98 27-128 43-147 (784)
7 3av4_A DNA (cytosine-5)-methyl 99.8 1.1E-18 3.6E-23 174.6 10.6 134 28-193 633-813 (1330)
8 1m4z_A Origin recognition comp 99.6 5.4E-15 1.8E-19 123.6 9.6 115 38-187 48-185 (238)
9 2fl7_A Regulatory protein SIR3 99.6 4.9E-15 1.7E-19 123.4 7.4 114 39-187 49-185 (232)
10 3zzs_A Transcription attenuati 88.9 0.9 3.1E-05 29.9 5.1 48 80-127 13-60 (65)
11 3zte_A Tryptophan operon RNA-b 84.6 1.5 5.1E-05 29.8 4.5 62 44-127 7-68 (78)
12 1gtf_A Trp RNA-binding attenua 79.2 3.2 0.00011 27.8 4.5 48 80-127 17-64 (74)
13 2eqj_A Metal-response element- 68.9 7.6 0.00026 25.8 4.3 28 42-72 13-40 (66)
14 4hcz_A PHD finger protein 1; p 66.9 11 0.00036 24.4 4.6 28 42-72 3-30 (58)
15 3llr_A DNA (cytosine-5)-methyl 63.9 5.4 0.00018 30.7 3.3 48 38-88 12-61 (154)
16 2m0o_A PHD finger protein 1; t 63.0 9.2 0.00031 26.1 3.9 29 41-72 25-53 (79)
17 2gfu_A DNA mismatch repair pro 59.7 7.3 0.00025 28.9 3.3 47 39-88 19-70 (134)
18 3p8d_A Medulloblastoma antigen 56.6 18 0.00061 23.9 4.4 37 42-86 6-42 (67)
19 1khc_A DNA cytosine-5 methyltr 55.1 6.4 0.00022 29.9 2.3 46 39-87 8-55 (147)
20 2l8d_A Lamin-B receptor; DNA b 51.8 13 0.00043 24.7 3.0 29 40-70 7-35 (66)
21 1nz9_A Transcription antitermi 48.9 14 0.00049 23.0 2.9 43 42-89 4-46 (58)
22 4fu6_A PC4 and SFRS1-interacti 48.5 12 0.00042 28.2 3.0 44 41-87 21-65 (153)
23 3qby_A Hepatoma-derived growth 47.8 14 0.00047 25.7 2.9 41 42-85 5-46 (94)
24 1ri0_A Hepatoma-derived growth 47.4 8 0.00028 27.8 1.7 45 39-86 16-61 (110)
25 2e6z_A Transcription elongatio 46.5 19 0.00064 22.9 3.2 40 41-87 6-45 (59)
26 2dig_A Lamin-B receptor; tudor 46.3 18 0.00061 24.0 3.1 29 40-70 10-38 (68)
27 2a7y_A Hypothetical protein RV 44.5 20 0.00068 24.8 3.2 39 44-85 7-45 (83)
28 2daq_A WHSC1L1 protein, isofor 44.5 4.6 0.00016 28.8 -0.0 45 39-86 5-55 (110)
29 2xk0_A Polycomb protein PCL; t 44.1 43 0.0015 22.2 4.7 26 41-69 14-39 (69)
30 3qii_A PHD finger protein 20; 42.8 37 0.0013 23.5 4.4 37 41-85 20-56 (85)
31 2e5p_A Protein PHF1, PHD finge 42.1 41 0.0014 22.3 4.3 30 40-72 7-36 (68)
32 1wgs_A MYST histone acetyltran 39.0 41 0.0014 24.9 4.5 35 41-78 11-45 (133)
33 2e5q_A PHD finger protein 19; 36.0 38 0.0013 22.1 3.4 30 40-72 5-34 (63)
34 2l89_A PWWP domain-containing 34.1 20 0.00067 25.5 2.0 44 40-86 3-52 (108)
35 2lcc_A AT-rich interactive dom 31.9 36 0.0012 22.7 2.9 32 41-72 4-35 (76)
36 3p8b_B Transcription antitermi 31.7 38 0.0013 25.1 3.4 43 41-88 90-132 (152)
37 2f5k_A MORF-related gene 15 is 29.2 1.1E+02 0.0036 21.7 5.2 28 41-72 21-48 (102)
38 4a4f_A SurviVal of motor neuro 26.6 93 0.0032 19.6 4.1 30 40-71 6-35 (64)
39 2ro0_A Histone acetyltransfera 26.3 89 0.003 21.7 4.2 28 41-72 22-49 (92)
40 1vq8_T 50S ribosomal protein L 24.3 81 0.0028 23.1 3.9 29 41-72 41-69 (120)
41 2rnz_A Histone acetyltransfera 22.1 1E+02 0.0035 21.6 3.9 28 41-72 24-51 (94)
42 1fry_A Myeloid antimicrobial p 21.7 20 0.00069 19.3 0.1 19 2-20 2-20 (29)
43 2equ_A PHD finger protein 20-l 20.8 81 0.0028 20.9 3.0 27 41-70 8-34 (74)
No 1
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=100.00 E-value=5.3e-35 Score=235.35 Aligned_cols=133 Identities=23% Similarity=0.405 Sum_probs=104.6
Q ss_pred cccccccccEEeeCCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCCCCCCCCceE
Q psy10248 26 PVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIF 105 (194)
Q Consensus 26 ~~~~~~Y~~~~~~dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~~~~~~~ELF 105 (194)
...+.+|+++.+ +|.+|++||+|||++++ .++++|||+|++||++. +|+++++|+|||||+||.++....+.+||||
T Consensus 11 ~~~r~~y~~~~~-~g~~~~vGD~V~v~~~~-~~~~p~I~rI~~i~~~~-~g~~~v~v~WfyRPeet~~~~~~~~~~~EvF 87 (174)
T 1w4s_A 11 SLHRTYSQDCSF-KNSMYHVGDYVYVEPAE-ANLQPHIVCIERLWEDS-AGEKWLYGCWFYRPNETFHLATRKFLEKEVF 87 (174)
T ss_dssp ----------------CCCTTCEEEECCSS-TTSCCEEEEEEEEEECT-TCCEEEEEEEEECGGGSCCCTTCEEETTEEE
T ss_pred CCCcEEeEEEEE-CCEEEECCCEEEEeCCC-CCCCCEEEEEEEEEEcC-CCCEEEEEEEecCHHHcccccCCcCCCCeeE
Confidence 356778999984 99999999999999986 35789999999999985 7899999999999999998776777899999
Q ss_pred EeCCccccccceecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceecccC
Q psy10248 106 ASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFR 185 (194)
Q Consensus 106 ~S~~~D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~ 185 (194)
+|++.|++|+++|.|||.|++.++|.+.++ .+ ...++|||||+.||..
T Consensus 88 ~S~~~d~~~~~~I~gkC~V~~~~~~~~~~p------~~--------------------------~~~~dvF~c~~~Yd~~ 135 (174)
T 1w4s_A 88 KSDYYNKVPVSKILGKCVVMFVKEYFKLCP------EN--------------------------FRDEDVYVCESRYSAK 135 (174)
T ss_dssp EEEEEEEEEGGGEEEEEEEEEHHHHTTEEE------TT--------------------------CCGGGEEEEEEEEETT
T ss_pred EeCCcceecHHHeeeeEEEEECchhhhcCc------CC--------------------------CCCCCEEEEeEEEccc
Confidence 999999999999999999999999987532 11 1345799999999999
Q ss_pred CceeccCC
Q psy10248 186 TKRLLKNP 193 (194)
Q Consensus 186 ~~~l~k~p 193 (194)
++++.+.|
T Consensus 136 ~~~f~~i~ 143 (174)
T 1w4s_A 136 TKSFKKIK 143 (174)
T ss_dssp TTEEEECS
T ss_pred cCeEccCc
Confidence 99998876
No 2
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.92 E-value=1.8e-24 Score=211.61 Aligned_cols=147 Identities=16% Similarity=0.271 Sum_probs=117.0
Q ss_pred CCCCCCC--cccccccccEEeeCCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCC
Q psy10248 19 TSTSDEH--PVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTS 96 (194)
Q Consensus 19 ~~~~~~~--~~~~~~Y~~~~~~dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~ 96 (194)
+|.+++. ...+.+|+++. ++|.+|+|||||||.+++ +..++|||+|++||++. +|++||+|+|||||+||.++++
T Consensus 134 ~W~G~p~k~~~~~~~Y~s~~-v~g~~i~VGD~V~v~~~d-~~~ppyIarIe~m~ed~-~g~k~~~v~Wf~rp~ET~lg~~ 210 (1002)
T 3swr_A 134 SWVGEAVKTDGKKSYYKKVC-IDAETLEVGDCVSVIPDD-SSKPLYLARVTALWEDS-SNGQMFHAHWFCAGTDTVLGAT 210 (1002)
T ss_dssp EEESCCCCCBTTEEECSEEE-ETTEEEETTCEEEECBSS-TTSCCEEEEEEEEEEET-TTEEEEEEEEEEEGGGSTTGGG
T ss_pred cccCcccccccCceeeeEEE-ECCEEEecCCEEEEecCC-CCCCceEEEEEEEeecC-CCCeEEEEEEEecchhcccccC
Confidence 4444444 34688999999 599999999999999987 46778999999999995 7899999999999999999876
Q ss_pred CCCCCCceEEeCCccccccceecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEE
Q psy10248 97 YRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVF 176 (194)
Q Consensus 97 ~~~~~~ELF~S~~~D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf 176 (194)
++++|||+|+++|++++++|.|||.|+..+.+.....+ .+.... .+. ..+..++|
T Consensus 211 --~~~~ElFlsd~cd~~~l~~I~gkc~V~~~~~~~~w~~~-----~~~~~~---~~~---------------~~~~~~~f 265 (1002)
T 3swr_A 211 --SDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAME-----GGMDPE---SLL---------------EGDDGKTY 265 (1002)
T ss_dssp --SCTTEEEEEEEEEEEEGGGEEEEECEEECCCCTTGGGC-----TTCCCC---CSC---------------CCCCCTSE
T ss_pred --CCCCceEeeccccCCcHHHhceeeEEEEccCCcchhhh-----cccccc---ccc---------------ccCCCCeE
Confidence 89999999999999999999999999986443332211 111000 011 11346899
Q ss_pred EEceecccCCceeccCC
Q psy10248 177 YCHKVYDFRTKRLLKNP 193 (194)
Q Consensus 177 ~Cr~~YD~~~~~l~k~p 193 (194)
||+..||+.+|+..+.|
T Consensus 266 fc~~~Y~~~~~~F~~lp 282 (1002)
T 3swr_A 266 FYQLWYDQDYARFESPP 282 (1002)
T ss_dssp EEEEEEETTTTEEECCC
T ss_pred EEEEEECCCCCcccCCC
Confidence 99999999999999887
No 3
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.91 E-value=1.6e-24 Score=216.44 Aligned_cols=155 Identities=17% Similarity=0.319 Sum_probs=114.5
Q ss_pred ceeeeecCCCCCCC--cccccccccEEeeCCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccC
Q psy10248 12 PYYFKYGTSTSDEH--PVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPE 89 (194)
Q Consensus 12 ~~~~~~g~~~~~~~--~~~~~~Y~~~~~~dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpe 89 (194)
+...++ .|.+++. ...+.+|+++. ++|.+|++||||||.+++ +..++|||+|++||++. +|++||+++|||||+
T Consensus 439 ~~~~~i-~W~G~p~k~~~~~~~Y~~~~-v~g~~~~vGD~V~v~~~d-~~~p~yiarIe~iwe~~-dg~~~~~~~WfyRp~ 514 (1330)
T 3av4_A 439 QNKDRI-SWLGQPMKIEENRTYYQKVS-IDEEMLEVGDCVSVIPDD-SSKPLYLARVTALWEDK-NGQMMFHAHWFCAGT 514 (1330)
T ss_dssp CCCSCE-EEESSCSCCC--CEEECSEE-EESSEEETTCEEEECBCC-SSCCCEEEEEEEEEEET-TCCEEEEEEEEEEGG
T ss_pred cccCCc-eEccCceeccCCceeeeEEE-ECCEEEecCCEEEEeCCC-CCCCCEEEEEeeeeecC-CCCEEEEEEEEEchH
Confidence 334445 5566654 35688999999 599999999999998876 34578999999999995 789999999999999
Q ss_pred cCCCCCCCCCCCCceEEeCCccccccceecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCC
Q psy10248 90 HTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQ 169 (194)
Q Consensus 90 E~~~~~~~~~~~~ELF~S~~~D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~ 169 (194)
||..++. ++++|||+|+++|++|+++|.|||.|++.+++..+-.+ .+.. |.. .. + .
T Consensus 515 ETvlg~~--~~~rElFlS~~~d~~~l~~I~gKC~V~~~~~~~~~~~~-----~~~~------~~~---------~~-~-~ 570 (1330)
T 3av4_A 515 DTVLGAT--SDPLELFLVGECENMQLSYIHSKVKVIYKAPSENWAME-----GGTD------PET---------TL-P-G 570 (1330)
T ss_dssp GSTTGGG--SCTTEEEEEEEEEEEEGGGEEEEECEEECCCCTTSTTC-----CC--------------------------
T ss_pred Hcccccc--cCCCeEEEecccccCcHHHhcceeEEEEeccchhhhhh-----cccC------ccc---------cc-c-c
Confidence 9988764 89999999999999999999999999986552221100 0110 000 00 0 0
Q ss_pred CCCCeEEEEceecccCCceeccCCC
Q psy10248 170 VSPDRVFYCHKVYDFRTKRLLKNPC 194 (194)
Q Consensus 170 ~~~~~vf~Cr~~YD~~~~~l~k~p~ 194 (194)
.....+|||+..||+.+++..+.|.
T Consensus 571 ~~~~~~F~C~~~Yd~~~~~F~~lp~ 595 (1330)
T 3av4_A 571 AEDGKTYFFQLWYNQEYARFESPPK 595 (1330)
T ss_dssp ----CCEEEEEEEETTTTEEECCCC
T ss_pred cccCCceEEEeEECCccCccCCcCc
Confidence 0223469999999999999988773
No 4
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=99.88 E-value=4.1e-22 Score=157.77 Aligned_cols=126 Identities=14% Similarity=0.198 Sum_probs=100.3
Q ss_pred cccccccEEee-CC---EEEecCCEEEEEcCCCCCCCCeEEEEeeEeecC--CCCceEEEEEEeeccCcCCCCCCC----
Q psy10248 28 VRNCYPAMRHI-QG---DIIQPRDCILLKSGTRKKDLPFIAKVGALWENP--EDGEMMVSLLWYYRPEHTEQGTSY---- 97 (194)
Q Consensus 28 ~~~~Y~~~~~~-dg---~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~--~~g~~~v~v~WfyRpeE~~~~~~~---- 97 (194)
....|++|... +| .++++||+|||++++ ...||||+|.+|+++. ....+.+.|+||+||+|++.++..
T Consensus 20 ~~~~Y~~~~v~~~~~~~~~i~vGd~VLI~~~D--~~~PyVAki~~lye~~~e~~~~k~A~VQWy~R~~EiP~~k~~l~g~ 97 (163)
T 4dov_A 20 FQQMYREICMKINDGSEIHIKVGQFVLIQGED--NKKPYVAKLIELFQNGAEVPPKKCARVQWFVRFLEIPVSKRHLLGR 97 (163)
T ss_dssp TEEEESEEEEECTTSCEEEEETTCEEEECCSS--SSCCEEEEEEEEEEETTSSSCEEEEEEEEEEEGGGSCTTTGGGGCS
T ss_pred cceeeeEEEEecCCCCCeEEeeCCEEEEeCCc--ccCChhHHHHHHHhccccCCCceEEEEEeeechhhccccchhhccC
Confidence 35688999842 45 899999999999987 4788999999999962 245789999999999999988643
Q ss_pred CCCCCceEEeCCcc---ccccceecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCe
Q psy10248 98 RDNKDEIFASRHRD---INSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDR 174 (194)
Q Consensus 98 ~~~~~ELF~S~~~D---~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
..+.+|||+++|.+ .+++++|.|+|+|++.+.++. +|. +...+.
T Consensus 98 ~~~~qEIF~~d~~~~d~~I~aeTIi~~c~V~~~~~~e~------------------~p~---------------~~~~e~ 144 (163)
T 4dov_A 98 SPPAQEIFWYDCSDWDNKINVETIIGPVQVVALAPEEV------------------IPV---------------DQKSEE 144 (163)
T ss_dssp CCCTTEEEEECCSCSCCEEEGGGEEEEEEEEECCTTCC------------------CCS---------------SCCCCS
T ss_pred CCCCCeEEEecCCCCcccccHHHeeeceEEEEcCCccc------------------cCC---------------Ccccce
Confidence 35678999998874 899999999999998855443 122 235667
Q ss_pred EEEEceecccCCce
Q psy10248 175 VFYCHKVYDFRTKR 188 (194)
Q Consensus 175 vf~Cr~~YD~~~~~ 188 (194)
+||-|...|-+.=+
T Consensus 145 t~FvklsWd~k~f~ 158 (163)
T 4dov_A 145 TLFVKLSWNKKDFA 158 (163)
T ss_dssp EEEEEEEECSSCEE
T ss_pred EEEEEEEecCCcce
Confidence 99999999976533
No 5
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.84 E-value=8.4e-21 Score=185.74 Aligned_cols=135 Identities=17% Similarity=0.343 Sum_probs=106.3
Q ss_pred cccccccEEeeCCEEEecCCEEEEEcCCC----------------------------------------CCCCCeEEEEe
Q psy10248 28 VRNCYPAMRHIQGDIIQPRDCILLKSGTR----------------------------------------KKDLPFIAKVG 67 (194)
Q Consensus 28 ~~~~Y~~~~~~dg~~~~vGD~Vlv~~~~~----------------------------------------~~~~p~IarI~ 67 (194)
.+.+|.++.+ +|.+|++||+|||.++.- ...|++||+|.
T Consensus 321 ~~~~~~~~~~-~g~~y~vgD~Vyl~p~~~~f~~~~~~~~~~~~~~~vd~~~ype~yrk~~~~~kg~n~~~~~P~~IgrI~ 399 (1002)
T 3swr_A 321 SRVLYYSATK-NGILYRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIK 399 (1002)
T ss_dssp SCEEESEEEE-TTEEEETTCEEEECTTSCCCSSCCCCCCCCSCSCCCCTTTCTTSGGGHHHHHTCCCCCCCCCCEEEEEE
T ss_pred CcEEEEEEEE-CCEEEecCCEEEECCcccccccccccccccccccccccccchhhhhccchhccccccCCCCCceeeEEe
Confidence 4678999995 999999999999998321 12367899999
Q ss_pred eEeecCC------CCceEEEEEEeeccCcCCCCC--CCCCCCCceEEeCCccccccceecceeEEecchhHhHhhhhhcc
Q psy10248 68 ALWENPE------DGEMMVSLLWYYRPEHTEQGT--SYRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRS 139 (194)
Q Consensus 68 ~i~ed~~------~g~~~v~v~WfyRpeE~~~~~--~~~~~~~ELF~S~~~D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~ 139 (194)
+||.+.. ....+++|+|||||+||..+. ....+.||||+|++.+++|+++|.|||.|+..+++......
T Consensus 400 ~i~~~~~~~~~~~~~~~~v~v~~fyRPed~~~~~~~~~~~D~~elf~S~~~~~~~~~~i~GkC~V~~~~d~~~~~~~--- 476 (1002)
T 3swr_A 400 EIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQV--- 476 (1002)
T ss_dssp EEEECCCSSSSCCSSCCEEEEEECBCGGGSTTCGGGGSSSCTTEEEECCCEEEEEGGGCCEEEEEEEGGGCSSCHHH---
T ss_pred EEEecCCccccCCCccEEEEEEEEECcccccccccccccCCcceEEEecceeccCHHHcceEEEEEEeccccccchh---
Confidence 9997532 123999999999999997543 35568899999999999999999999999999777542210
Q ss_pred cccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceecccCCceeccCCC
Q psy10248 140 IEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNPC 194 (194)
Q Consensus 140 ~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~~~~l~k~p~ 194 (194)
|. ...++++||| ..||..+|++.+.|.
T Consensus 477 -------------------~~--------~~~p~~fyf~-~~Yd~~~~~f~~~p~ 503 (1002)
T 3swr_A 477 -------------------YS--------MGGPNRFYFL-EAYNAKSKSFEDPPN 503 (1002)
T ss_dssp -------------------HH--------HTSSSEEEEE-EEEETTTTEEECCCS
T ss_pred -------------------hc--------cCCCCeEEEE-EEEeCCCCeeecCcc
Confidence 00 0145788888 999999999988774
No 6
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=99.79 E-value=2.5e-19 Score=171.11 Aligned_cols=98 Identities=18% Similarity=0.409 Sum_probs=87.0
Q ss_pred ccccccccEEeeCCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCC-------CCCC
Q psy10248 27 VVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGT-------SYRD 99 (194)
Q Consensus 27 ~~~~~Y~~~~~~dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~-------~~~~ 99 (194)
..+.+|+++. +||.+|++||+|||++++ ..+.+||+|.+||++. +|..+++|+|||||+||..+. ...+
T Consensus 43 ~~~~~~~~~~-~~~~~~~~~d~~~v~~~~--~~~~~i~~i~~~~~~~-~~~~~~~~~~~~r~~d~~~~~~~~~~~~~~~~ 118 (784)
T 4ft4_B 43 KARCHYRSAK-VDNVVYCLGDDVYVKAGE--NEADYIGRITEFFEGT-DQCHYFTCRWFFRAEDTVINSLVSISVDGHKH 118 (784)
T ss_dssp CEEEECSEEE-ETTEEEETTCEEEECCST--TSCCEEEEEEEEEEET-TSCEEEEEEEEEEGGGSTTGGGGGCCBTTBCC
T ss_pred ccceeeeeee-ECCEEEeCCCeEEEeCCC--CCCCEEEEEEEEEEcC-CCCEEEEEEEeeChhhhccccccccccccccc
Confidence 4577899999 699999999999999975 5788999999999985 799999999999999997542 3567
Q ss_pred CCCceEEeCCccccccceecceeEEecch
Q psy10248 100 NKDEIFASRHRDINSVACIEDKCYVLTYR 128 (194)
Q Consensus 100 ~~~ELF~S~~~D~~~v~~I~gKc~Vl~~~ 128 (194)
+++|||+|++.++|+++||.|||+|+...
T Consensus 119 d~~~~~~s~~~~~~~~~~i~~k~~v~~~~ 147 (784)
T 4ft4_B 119 DPRRVFLSEEKNDNVLDCIISKVKIVHVD 147 (784)
T ss_dssp CTTBEEEEEEEEEEEGGGEEEECCEEECC
T ss_pred ccceEEEeCcEEEechHHeeeeEEEEeeC
Confidence 89999999999999999999999998753
No 7
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.76 E-value=1.1e-18 Score=174.63 Aligned_cols=134 Identities=16% Similarity=0.282 Sum_probs=105.1
Q ss_pred cccccccEEeeCCEEEecCCEEEEEcCCC----------------------------------------CCCCCeEEEEe
Q psy10248 28 VRNCYPAMRHIQGDIIQPRDCILLKSGTR----------------------------------------KKDLPFIAKVG 67 (194)
Q Consensus 28 ~~~~Y~~~~~~dg~~~~vGD~Vlv~~~~~----------------------------------------~~~~p~IarI~ 67 (194)
...+|.++.+ +|.+|++||+|||.++.- ...+.+||+|.
T Consensus 633 ~~~~Y~~~~~-~g~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~~~~~ype~yrk~~~~~kg~~~~~~~Py~IgqI~ 711 (1330)
T 3av4_A 633 GRVYCSSITK-NGVVYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGRIK 711 (1330)
T ss_dssp SSEEEEEEEE-TTEEEETTCEEEECTTSCCCCCCC-------CCCCCCTTTCSSGGGGGC-------CCCCCCCEEEEEE
T ss_pred CceeeeEEEE-CCEEEecCCEEEECcccccccccccccccccccccccccccchhhhcccccccccccCCCCCceEEEEE
Confidence 4668888885 999999999999976510 02456899999
Q ss_pred eEeecCCC-----CceEEEEEEeeccCcCCCCC--CCCCCCCceEEeCCccccccceecceeEEecchhHhHhhhhhccc
Q psy10248 68 ALWENPED-----GEMMVSLLWYYRPEHTEQGT--SYRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSI 140 (194)
Q Consensus 68 ~i~ed~~~-----g~~~v~v~WfyRpeE~~~~~--~~~~~~~ELF~S~~~D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~ 140 (194)
+||.+.+. +..+++|+|||||+||.++. ...++.||||+|++.+++|+++|.|||.|+..+++.+...
T Consensus 712 eI~~~~~s~~~~~~~~~vrV~wFyRPedt~~~~~~~~~~D~nELf~S~~~~~vp~~~I~GKC~V~~~~d~~~~i~----- 786 (1330)
T 3av4_A 712 EIHCGKKKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQ----- 786 (1330)
T ss_dssp ECCCCEETTEECSSCCEEEEEEEECTTTSTTGGGTTTTSCTTBCEEEEEEEEEEGGGCCEEEEEEESTTCSSCHH-----
T ss_pred EEEecCCccccCCCceEEEEEEeeChhhcccccccccccCcceEEeeccceecCHHHcCceEEEEeccccccccc-----
Confidence 99986422 57999999999999998753 3467999999999999999999999999998866544110
Q ss_pred ccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceecccCCceeccCC
Q psy10248 141 EDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNP 193 (194)
Q Consensus 141 ~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~~~~l~k~p 193 (194)
|. .....++|||+..||..+|++.+.|
T Consensus 787 -----------~y---------------~~~g~d~Fy~~~~Yd~~~k~~~~~P 813 (1330)
T 3av4_A 787 -----------DY---------------SQGGPDRFYFLEAYNSKTKNFEDPP 813 (1330)
T ss_dssp -----------HH---------------HHTSTTEEEESCEEETTTTEEECCC
T ss_pred -----------cc---------------ccCCCCeEEEEEEecccCCeeccCc
Confidence 00 0022358999999999999987655
No 8
>1m4z_A Origin recognition complex subunit 1; DNA replication, transcriptional silencing, chromatin, BAH D gene regulation; 2.20A {Saccharomyces cerevisiae} SCOP: b.34.12.1 PDB: 1zhi_A 1zbx_A
Probab=99.58 E-value=5.4e-15 Score=123.56 Aligned_cols=115 Identities=13% Similarity=0.118 Sum_probs=90.5
Q ss_pred eCCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCC-------CCC--------CC----
Q psy10248 38 IQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQ-------GTS--------YR---- 98 (194)
Q Consensus 38 ~dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~-------~~~--------~~---- 98 (194)
.||.++++||+|+|+.+. .+...++.|..|--...+.-..+.|.||+|..|+.. .+. ..
T Consensus 48 ~Dg~~~~~GDsVlv~~~~--~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~~~~ 125 (238)
T 1m4z_A 48 SDGIKLGRGDSVVMHNEA--AGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVNPLAHYRQFNPDANILNRPLNYYNKL 125 (238)
T ss_dssp TTCCEECTTCEEEEEETT--TTEEEEEEEEEEEEETTTTEEEEEEEEEECGGGSCHHHHHHHHCHHHHHSCCCHHHHHHH
T ss_pred cCCcEEeCCCEEEEecCC--CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhhhhhh
Confidence 389999999999998874 345556667666544324578899999999999976 221 23
Q ss_pred ----CCCCceEEeCCccccccceecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCe
Q psy10248 99 ----DNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDR 174 (194)
Q Consensus 99 ----~~~~ELF~S~~~D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
...||||+|.+.+.|-+.+|+++|.|++.++|..... +...+.
T Consensus 126 ~~~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~i~~---------------------------------d~~~~~ 172 (238)
T 1m4z_A 126 FSETANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLKG---------------------------------NVDPER 172 (238)
T ss_dssp HHHHSCTTEEEEEEEEEEECGGGEEEEEEEECHHHHHHHGG---------------------------------GCCTTT
T ss_pred hhcccccceEEEeccHHHHhHHhhhhheEeccHHHHhhhcc---------------------------------ccccCc
Confidence 6899999999999999999999999999999987421 113457
Q ss_pred EEEEceecccCCc
Q psy10248 175 VFYCHKVYDFRTK 187 (194)
Q Consensus 175 vf~Cr~~YD~~~~ 187 (194)
+||||++||+...
T Consensus 173 tFf~R~~cd~~~~ 185 (238)
T 1m4z_A 173 DFTVRYICEPTGE 185 (238)
T ss_dssp EEEEEEECCTTSC
T ss_pred eEEEEEEEcCCcC
Confidence 9999999999643
No 9
>2fl7_A Regulatory protein SIR3; ORC, silencing, chromatin, transcription; 1.85A {Saccharomyces cerevisiae} PDB: 2fvu_A 3tu4_K*
Probab=99.56 E-value=4.9e-15 Score=123.37 Aligned_cols=114 Identities=10% Similarity=0.047 Sum_probs=85.1
Q ss_pred CCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCC-------CCC--------CC-----
Q psy10248 39 QGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQ-------GTS--------YR----- 98 (194)
Q Consensus 39 dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~-------~~~--------~~----- 98 (194)
||.++++||+|+|+.+. .+...++.|..|--...+.-..+.|.||+|..|+.. .+. ..
T Consensus 49 Dg~~~~~GDsVlv~~~~--~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~~~~~ 126 (232)
T 2fl7_A 49 DGLSFGKGESVIFNDNV--TETYSVYLIHEIRLNTLNNVVEIWVFSYLRWFELKPKLYYEQFRPDLIKEDHPLEFYKDKF 126 (232)
T ss_dssp TCCEECTTCEEEEEETT--TTEEEEEEEEEEEC-----CCEEEEEEEECGGGSCHHHHHHHHCHHHHHTTCCHHHHHHHH
T ss_pred CCcEEeCCCEEEEecCC--CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhhhhhhh
Confidence 89999999999998874 344556666666444223468999999999999976 221 23
Q ss_pred ---CCCCceEEeCCccccccceecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeE
Q psy10248 99 ---DNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRV 175 (194)
Q Consensus 99 ---~~~~ELF~S~~~D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~v 175 (194)
...||||+|.+.+.|-+.+|+++|.|++.++|....- +...+.+
T Consensus 127 ~~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~l~~---------------------------------d~~~~~t 173 (232)
T 2fl7_A 127 FNEVNKSELYLTAELSEIWLKDFIAVGQILPESQWNDSSI---------------------------------DKIEDRD 173 (232)
T ss_dssp HHHSCTTEEEEEEEEEEECGGGEEEECEEECTTTC----------------------------------------CTTTE
T ss_pred hcccccceEEEeccHHHHHHHhhhhheEeccHHHHHHhcc---------------------------------cccCCce
Confidence 6899999999999999999999999999999976321 1144579
Q ss_pred EEEceecccCCc
Q psy10248 176 FYCHKVYDFRTK 187 (194)
Q Consensus 176 f~Cr~~YD~~~~ 187 (194)
||||++||+...
T Consensus 174 Ff~R~~cd~~~~ 185 (232)
T 2fl7_A 174 FLVRYACEPTAE 185 (232)
T ss_dssp EEEEEECCTTSC
T ss_pred EEEEEEEcCCcC
Confidence 999999999643
No 10
>3zzs_A Transcription attenuation protein MTRB; transcription regulation, protein engineering; HET: TRP; 1.49A {Geobacillus stearothermophilus} SCOP: b.82.5.1 PDB: 3zzq_A* 3zzl_A*
Probab=88.88 E-value=0.9 Score=29.89 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=37.6
Q ss_pred EEEEEeeccCcCCCCCCCCCCCCceEEeCCccccccceecceeEEecc
Q psy10248 80 VSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTY 127 (194)
Q Consensus 80 v~v~WfyRpeE~~~~~~~~~~~~ELF~S~~~D~~~v~~I~gKc~Vl~~ 127 (194)
|.|.=.-|-.|+.-.-....+..||.+...++-.+.-.|.||+.|++.
T Consensus 13 V~VigltRg~dtkfhhtEkLdkGEVmiaQftehtsaiKiRGkA~i~t~ 60 (65)
T 3zzs_A 13 VNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTR 60 (65)
T ss_dssp EEEEC-CCSSSCCCCCEEEECTTCEEEEECCSSCSEEEEESSEEEEET
T ss_pred eEEEEeeccCCccchhhhccCCCcEEEEEeecceeEEEEeceEEEEee
Confidence 555556677777554445568899999999999999999999999874
No 11
>3zte_A Tryptophan operon RNA-binding attenuation protein; RNA-binding protein, transcription factors, trinucleotide RE; HET: TRP; 2.41A {Bacillus licheniformis} SCOP: b.82.5.1
Probab=84.60 E-value=1.5 Score=29.83 Aligned_cols=62 Identities=21% Similarity=0.279 Sum_probs=43.8
Q ss_pred ecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCCCCCCCCceEEeCCccccccceecceeE
Q psy10248 44 QPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCY 123 (194)
Q Consensus 44 ~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~~~~~~~ELF~S~~~D~~~v~~I~gKc~ 123 (194)
..||+|.|++.. +| |.|.=.-|-.|+.-.-....+..||.+...++-.+.--|.||+.
T Consensus 7 ~~~dYivIkA~e-------------------ng---V~VIGltRG~dtkfhHtEkLdkGEVmIaQFTehtsaiKiRGkA~ 64 (78)
T 3zte_A 7 QSNDFVVIKAVE-------------------DG---VNVIGLTRGTDTRFHHSEKLDKGEVMICQFTEHTSAIKVRGEAL 64 (78)
T ss_dssp ---CEEEEEESS-------------------SS---EEEEEEECSSSCCEEEEEEECTTCEEEEECCSSEEEEEEESSEE
T ss_pred cccCEEEEEEec-------------------CC---eEEEEeeccCCcccceehccCCCcEEEEEeecceeEEEEeeeEE
Confidence 356777777764 23 44555556666643333446789999999999999999999999
Q ss_pred Eecc
Q psy10248 124 VLTY 127 (194)
Q Consensus 124 Vl~~ 127 (194)
|++.
T Consensus 65 I~t~ 68 (78)
T 3zte_A 65 IQTA 68 (78)
T ss_dssp EEET
T ss_pred EEec
Confidence 9975
No 12
>1gtf_A Trp RNA-binding attenuation protein (trap); RNA binding protein-RNA complex, transcription attenuation, RNA-binding protein, Trp RNA; HET: TRP; 1.75A {Bacillus stearothermophilus} SCOP: b.82.5.1 PDB: 1c9s_A* 1gtn_A* 1qaw_A* 1utd_A* 1utf_A* 1utv_A* 2zp8_A* 3aqd_A 2zcz_A* 2zp9_A* 2zd0_A* 2ext_A* 2exs_A* 1wap_A*
Probab=79.24 E-value=3.2 Score=27.77 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=37.5
Q ss_pred EEEEEeeccCcCCCCCCCCCCCCceEEeCCccccccceecceeEEecc
Q psy10248 80 VSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTY 127 (194)
Q Consensus 80 v~v~WfyRpeE~~~~~~~~~~~~ELF~S~~~D~~~v~~I~gKc~Vl~~ 127 (194)
|.|.=.-|-.|+.-.-....+..||.+...++-.++-.|.||+.|++.
T Consensus 17 V~viGLTRG~dTkFhHtEKLDkGEVmiaQFTehTSAiKiRGka~i~t~ 64 (74)
T 1gtf_A 17 VNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTR 64 (74)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTCEEEEECCSSEEEEEEESSEEEEET
T ss_pred eEEEEeccCCcccccchhhcCCCcEEEEEeccceeeEEEeccEEEEee
Confidence 555566677776543344567899999999999999999999999875
No 13
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=68.94 E-value=7.6 Score=25.78 Aligned_cols=28 Identities=7% Similarity=0.078 Sum_probs=24.0
Q ss_pred EEecCCEEEEEcCCCCCCCCeEEEEeeEeec
Q psy10248 42 IIQPRDCILLKSGTRKKDLPFIAKVGALWEN 72 (194)
Q Consensus 42 ~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed 72 (194)
.+++||.|+..=.+ ...|.|.|.+|.++
T Consensus 13 ~f~vGddVLA~wtD---Gl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 13 KFEEGQDVLARWSD---GLFYLGTIKKINIL 40 (66)
T ss_dssp CSCTTCEEEEECTT---SCEEEEEEEEEETT
T ss_pred cccCCCEEEEEEcc---CcEEEeEEEEEccC
Confidence 58999999998655 68999999999765
No 14
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=66.86 E-value=11 Score=24.43 Aligned_cols=28 Identities=7% Similarity=0.080 Sum_probs=24.0
Q ss_pred EEecCCEEEEEcCCCCCCCCeEEEEeeEeec
Q psy10248 42 IIQPRDCILLKSGTRKKDLPFIAKVGALWEN 72 (194)
Q Consensus 42 ~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed 72 (194)
.+++||.||++-.+ ...|.|.|+++-..
T Consensus 3 ~f~~GedVLarwsD---G~fYlGtI~~V~~~ 30 (58)
T 4hcz_A 3 RLWEGQDVLARWTD---GLLYLGTIKKVDSA 30 (58)
T ss_dssp SCCTTCEEEEECTT---SCEEEEEEEEEETT
T ss_pred ccccCCEEEEEecC---CCEEeEEEEEEecC
Confidence 36799999999887 78999999999654
No 15
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=63.88 E-value=5.4 Score=30.70 Aligned_cols=48 Identities=10% Similarity=0.081 Sum_probs=35.6
Q ss_pred eCCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCC--CCceEEEEEEeecc
Q psy10248 38 IQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPE--DGEMMVSLLWYYRP 88 (194)
Q Consensus 38 ~dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~--~g~~~v~v~WfyRp 88 (194)
.||..+++||.|..+-.+ -+.|-|+|...-.... .....+.|+||=..
T Consensus 12 ~dg~~f~~GDLVWaKvkG---~PwWPa~V~~~~~~~k~~~~~~~~~V~FFG~~ 61 (154)
T 3llr_A 12 EDGRGFGIGELVWGKLRG---FSWWPGRIVSWWMTGRSRAAEGTRWVMWFGDG 61 (154)
T ss_dssp CSSCCCCTTCEEEECCTT---SCCEEEEEECGGGTTSCCCCTTEEEEEETTTC
T ss_pred ccCCCCccCCEEEEecCC---CCCCCEEEecccccccccCCCCEEEEEEeCCC
Confidence 377889999999999875 7999999999753211 12346778888654
No 16
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=63.01 E-value=9.2 Score=26.14 Aligned_cols=29 Identities=7% Similarity=0.069 Sum_probs=25.2
Q ss_pred EEEecCCEEEEEcCCCCCCCCeEEEEeeEeec
Q psy10248 41 DIIQPRDCILLKSGTRKKDLPFIAKVGALWEN 72 (194)
Q Consensus 41 ~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed 72 (194)
..|.+||.||++-.+ ...|.|.|.++-+.
T Consensus 25 ~~f~eGeDVLarwsD---GlfYLGTI~kV~~~ 53 (79)
T 2m0o_A 25 PRLWEGQDVLARWTD---GLLYLGTIKKVDSA 53 (79)
T ss_dssp CCCCTTCEEEBCCTT---SCCCEEEEEEEETT
T ss_pred ceeccCCEEEEEecC---CCEEeEEEEEeccC
Confidence 468999999999887 78999999999654
No 17
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=59.68 E-value=7.3 Score=28.86 Aligned_cols=47 Identities=11% Similarity=-0.023 Sum_probs=35.0
Q ss_pred CCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCC-----CCceEEEEEEeecc
Q psy10248 39 QGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPE-----DGEMMVSLLWYYRP 88 (194)
Q Consensus 39 dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~-----~g~~~v~v~WfyRp 88 (194)
++..+++||.|..+-.+ -+.|-|+|...-.... .....+.|+||-..
T Consensus 19 ~~~~~~~GdlVwaK~~g---~P~WPa~V~~~~~~~~~~~~~~~~~~~~V~FFg~~ 70 (134)
T 2gfu_A 19 TSSDFSPGDLVWAKMEG---YPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFDDS 70 (134)
T ss_dssp SSCCCCTTSEEEECCTT---SCCEEEECCCCSSTTCCEEESSSCEEEEEEECSSS
T ss_pred cCCCCCCCCEEEEeecC---CCCCCeeecchhhhhhhhhccCCCceEEEEECCCC
Confidence 57789999999999886 7999999988643210 11357889888653
No 18
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=56.61 E-value=18 Score=23.93 Aligned_cols=37 Identities=19% Similarity=0.083 Sum_probs=28.4
Q ss_pred EEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEee
Q psy10248 42 IIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYY 86 (194)
Q Consensus 42 ~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~Wfy 86 (194)
.+++||-|+.+=++ ...|=|+|.++-.+ ....|.++-
T Consensus 6 ~~~vGd~vmArW~D---~~yYpA~I~si~~~-----~~Y~V~F~d 42 (67)
T 3p8d_A 6 EFQINEQVLACWSD---CRFYPAKVTAVNKD-----GTYTVKFYD 42 (67)
T ss_dssp CCCTTCEEEEECTT---SCEEEEEEEEECTT-----SEEEEEETT
T ss_pred ccccCCEEEEEcCC---CCEeeEEEEEECCC-----CeEEEEEeC
Confidence 58899999999864 78899999999443 346676653
No 19
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=55.08 E-value=6.4 Score=29.91 Aligned_cols=46 Identities=13% Similarity=-0.059 Sum_probs=34.1
Q ss_pred CCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCC--CCceEEEEEEeec
Q psy10248 39 QGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPE--DGEMMVSLLWYYR 87 (194)
Q Consensus 39 dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~--~g~~~v~v~WfyR 87 (194)
++..+++||.|..+-.+ -+.|-|+|.+.-.... .....+.|+||-.
T Consensus 8 ~~~~~~~GDlVWaKvkG---yPwWPa~V~~~~~~~~~~~~~~~~~V~FFG~ 55 (147)
T 1khc_A 8 DDKEFGIGDLVWGKIKG---FSWWPAMVVSWKATSKRQAMPGMRWVQWFGD 55 (147)
T ss_dssp SSSSCCTTCEEEEEETT---TEEEEEEEECGGGTTSCCCCTTEEEEEETTT
T ss_pred CCccCcCCCEEEEecCC---cCCCCEEeccchhhhcccCCCCeEEEEEecC
Confidence 57789999999999875 7999999998754311 1234678888763
No 20
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=51.78 E-value=13 Score=24.65 Aligned_cols=29 Identities=7% Similarity=-0.036 Sum_probs=24.7
Q ss_pred CEEEecCCEEEEEcCCCCCCCCeEEEEeeEe
Q psy10248 40 GDIIQPRDCILLKSGTRKKDLPFIAKVGALW 70 (194)
Q Consensus 40 g~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ 70 (194)
...|.+||.|+-+=.+ ++..|-|+|.+|-
T Consensus 7 ~~~~~vgd~VmaRW~G--d~~yYparI~Si~ 35 (66)
T 2l8d_A 7 NRKYADGEVVMGRWPG--SVLYYEVQVTSYD 35 (66)
T ss_dssp SSSSCSSCEEEEECTT--SSCEEEEEEEEEE
T ss_pred ceEeecCCEEEEEcCC--CccceEEEEEEec
Confidence 4568999999998754 5889999999996
No 21
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=48.91 E-value=14 Score=23.01 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=32.5
Q ss_pred EEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccC
Q psy10248 42 IIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPE 89 (194)
Q Consensus 42 ~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpe 89 (194)
.+++||.|.|..++ -.-+.|.|.++..+ .+...+.+..|-|.-
T Consensus 4 ~~~~Gd~V~V~~Gp---f~g~~g~v~~v~~~--k~~v~V~v~~~Gr~t 46 (58)
T 1nz9_A 4 AFREGDQVRVVSGP---FADFTGTVTEINPE--RGKVKVMVTIFGRET 46 (58)
T ss_dssp SCCTTCEEEECSGG---GTTCEEEEEEEETT--TTEEEEEEESSSSEE
T ss_pred ccCCCCEEEEeecC---CCCcEEEEEEEcCC--CCEEEEEEEeCCCEE
Confidence 36799999999996 56689999999433 456777777776643
No 22
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=48.50 E-value=12 Score=28.19 Aligned_cols=44 Identities=14% Similarity=0.152 Sum_probs=29.8
Q ss_pred EEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCC-CCceEEEEEEeec
Q psy10248 41 DIIQPRDCILLKSGTRKKDLPFIAKVGALWENPE-DGEMMVSLLWYYR 87 (194)
Q Consensus 41 ~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~-~g~~~v~v~WfyR 87 (194)
..|++||.|..+-.+ -+.|-|+|...-+... .....+-|+||-.
T Consensus 21 ~~f~~GdlVwaK~~g---~p~WPa~V~~~~~~~~~~~~~~~~V~FfG~ 65 (153)
T 4fu6_A 21 RDFKPGDLIFAKMKG---YPHWPARVDEVPDGAVKPPTNKLPIFFFGT 65 (153)
T ss_dssp GGCCTTCEEEECCTT---SCCEEEEECCCC---CCCCTTCEEEEETTT
T ss_pred cCCCCCCEEEEeCCC---CCCCCEEEeEchhhccCCCCCEEEEEecCC
Confidence 348999999999986 7999999987643211 1234566777643
No 23
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=47.79 E-value=14 Score=25.72 Aligned_cols=41 Identities=10% Similarity=0.229 Sum_probs=28.0
Q ss_pred EEecCCEEEEEcCCCCCCCCeEEEEeeEeecC-CCCceEEEEEEe
Q psy10248 42 IIQPRDCILLKSGTRKKDLPFIAKVGALWENP-EDGEMMVSLLWY 85 (194)
Q Consensus 42 ~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~-~~g~~~v~v~Wf 85 (194)
.+++||.|..+-.+ -+.|-|+|.++-+.. +.....+.|+||
T Consensus 5 ~f~~GdlVwaK~~g---~p~WPa~V~~~~~~~~k~~~~~~~V~FF 46 (94)
T 3qby_A 5 AFKPGDLVFAKMKG---YPHWPARIDDIADGAVKPPPNKYPIFFF 46 (94)
T ss_dssp CCCTTCEEEECCTT---SCCEEEEECCCCTTSBCCCTTCEEEEET
T ss_pred cCccCCEEEEecCC---CCCCCEEEeecccccccCCCCEEEEEEE
Confidence 47899999999976 899999999863210 011234556665
No 24
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=47.37 E-value=8 Score=27.81 Aligned_cols=45 Identities=9% Similarity=0.082 Sum_probs=32.2
Q ss_pred CCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecC-CCCceEEEEEEee
Q psy10248 39 QGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENP-EDGEMMVSLLWYY 86 (194)
Q Consensus 39 dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~-~~g~~~v~v~Wfy 86 (194)
++..+++||.|..+-.+ -+.|-|+|.++-+.. +.....+-|+||-
T Consensus 16 ~~~~~~~GdlVwaK~kG---yP~WPa~V~~~p~~~~k~~~~~~~V~FFG 61 (110)
T 1ri0_A 16 RQKEYKCGDLVFAKMKG---YPHWPARIDEMPEAAVKSTANKYQVFFFG 61 (110)
T ss_dssp CSSSCCTTCEEEEEETT---EEEEEEEEECCCSSSSCCCSSCEEEEETT
T ss_pred ccCCCCCCCEEEEEeCC---CCCCCEEEecccHhhcCCCCCEEEEEEec
Confidence 46789999999999876 799999998753221 1123556777773
No 25
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.52 E-value=19 Score=22.86 Aligned_cols=40 Identities=13% Similarity=0.043 Sum_probs=29.9
Q ss_pred EEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeec
Q psy10248 41 DIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYR 87 (194)
Q Consensus 41 ~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyR 87 (194)
..+.+||.|.|..++ -.-+.|+|+++-. ....+.+.-|-|
T Consensus 6 ~~f~~GD~V~V~~Gp---f~g~~G~V~evd~----e~v~V~v~~fg~ 45 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGE---LINLQGKILSVDG----NKITIMPKHEDL 45 (59)
T ss_dssp SSCCTTSEEEECSST---TTTCEEEECCCBT----TEEEEEECCSSC
T ss_pred ccCCCCCEEEEeecC---CCCCEEEEEEEeC----CEEEEEEEecCC
Confidence 458899999999997 6779999999832 255566654555
No 26
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=46.34 E-value=18 Score=24.02 Aligned_cols=29 Identities=3% Similarity=-0.102 Sum_probs=24.8
Q ss_pred CEEEecCCEEEEEcCCCCCCCCeEEEEeeEe
Q psy10248 40 GDIIQPRDCILLKSGTRKKDLPFIAKVGALW 70 (194)
Q Consensus 40 g~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ 70 (194)
...|.+||.|+-+=.+ ++..|-|||.+|-
T Consensus 10 ~~~f~vgd~VmaRW~G--d~~yYparItSit 38 (68)
T 2dig_A 10 SRKFADGEVVRGRWPG--SSLYYEVEILSHD 38 (68)
T ss_dssp CCSSCSSCEEEEECTT--TCCEEEEEEEEEE
T ss_pred ceEeecCCEEEEEccC--CccceEEEEEEec
Confidence 4568999999998665 5899999999996
No 27
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=44.51 E-value=20 Score=24.78 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=32.0
Q ss_pred ecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEe
Q psy10248 44 QPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWY 85 (194)
Q Consensus 44 ~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~Wf 85 (194)
.+||.+.|.+.. -..+...|.|.++--. +|..=..|+|+
T Consensus 7 ~vGDrlvv~g~~-vg~~~R~GeIvEV~g~--dG~PPY~VRw~ 45 (83)
T 2a7y_A 7 KVGDYLVVKGTT-TERHDQHAEIIEVRSA--DGSPPYVVRWL 45 (83)
T ss_dssp CTTEEEEESCTT-TSCCEEEEEEEECSCS--SSCSCEEEEET
T ss_pred cCCCEEEEecCc-CCCCCcEEEEEEEECC--CCCCCEEEEec
Confidence 589999999875 3578899999999765 57788889995
No 28
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=44.51 E-value=4.6 Score=28.83 Aligned_cols=45 Identities=9% Similarity=0.098 Sum_probs=32.7
Q ss_pred CCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecC------CCCceEEEEEEee
Q psy10248 39 QGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENP------EDGEMMVSLLWYY 86 (194)
Q Consensus 39 dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~------~~g~~~v~v~Wfy 86 (194)
+|..+++||.|..+-.+ -+.|-|+|.+.-.-+ ......+-|+||-
T Consensus 5 ~g~~~~~GdlVwaK~~g---~p~WPa~V~~~~~~p~~~~~~~~~~~~~~V~FFg 55 (110)
T 2daq_A 5 SSGKLHYKQIVWVKLGN---YRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFG 55 (110)
T ss_dssp CCCSCCSSEEEEEECSS---SCEEEEEECCTTTSCHHHHTSCCCSSCEEEEETT
T ss_pred CCCCCCCCCEEEEEeCC---CCCCceeeCChhhCCHHHhhccCCCCcEEEEEec
Confidence 57788999999999886 799999998773211 1122457888885
No 29
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=44.06 E-value=43 Score=22.25 Aligned_cols=26 Identities=4% Similarity=0.069 Sum_probs=22.1
Q ss_pred EEEecCCEEEEEcCCCCCCCCeEEEEeeE
Q psy10248 41 DIIQPRDCILLKSGTRKKDLPFIAKVGAL 69 (194)
Q Consensus 41 ~~~~vGD~Vlv~~~~~~~~~p~IarI~~i 69 (194)
..|.+||.||++-.+ ...|.|.|++.
T Consensus 14 ~~~~~geDVL~rw~D---G~fYLGtIVd~ 39 (69)
T 2xk0_A 14 VTYALQEDVFIKCND---GRFYLGTIIDQ 39 (69)
T ss_dssp CCCCTTCEEEEECTT---SCEEEEEEEEE
T ss_pred cccccCCeEEEEecC---CCEEEEEEEec
Confidence 458899999999876 78999999664
No 30
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=42.79 E-value=37 Score=23.48 Aligned_cols=37 Identities=19% Similarity=0.113 Sum_probs=28.4
Q ss_pred EEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEe
Q psy10248 41 DIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWY 85 (194)
Q Consensus 41 ~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~Wf 85 (194)
..+++||-|+-+=++ ...|-|+|.++-++ ....|.++
T Consensus 20 ~~f~vGd~VlArW~D---~~yYPAkI~sV~~~-----~~YtV~F~ 56 (85)
T 3qii_A 20 SEFQINEQVLACWSD---CRFYPAKVTAVNKD-----GTYTVKFY 56 (85)
T ss_dssp -CCCTTCEEEEECTT---SCEEEEEEEEECTT-----SEEEEEET
T ss_pred cccccCCEEEEEeCC---CCEeeEEEEEECCC-----CeEEEEEe
Confidence 579999999999865 78899999999543 23666664
No 31
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.14 E-value=41 Score=22.29 Aligned_cols=30 Identities=10% Similarity=0.140 Sum_probs=25.5
Q ss_pred CEEEecCCEEEEEcCCCCCCCCeEEEEeeEeec
Q psy10248 40 GDIIQPRDCILLKSGTRKKDLPFIAKVGALWEN 72 (194)
Q Consensus 40 g~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed 72 (194)
+..+.+||.||.+=.+ ...|.|.|.++-..
T Consensus 7 ~~~f~eGqdVLarWsD---GlfYlGtV~kV~~~ 36 (68)
T 2e5p_A 7 GPRLWEGQDVLARWTD---GLLYLGTIKKVDSA 36 (68)
T ss_dssp CCCCCTTCEEEEECTT---SSEEEEEEEEEETT
T ss_pred CcccccCCEEEEEecC---CcEEEeEEEEEecC
Confidence 3568999999998886 68999999999754
No 32
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=39.03 E-value=41 Score=24.92 Aligned_cols=35 Identities=14% Similarity=0.042 Sum_probs=26.2
Q ss_pred EEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCce
Q psy10248 41 DIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEM 78 (194)
Q Consensus 41 ~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~ 78 (194)
..|.+|+.|++.-++ ...|-|+|.++......+..
T Consensus 11 ~~~~vGe~v~~~~~d---~~~y~AkIl~i~~~~~~~~~ 45 (133)
T 1wgs_A 11 VTVEIGETYLCRRPD---STWHSAEVIQSRVNDQEGRE 45 (133)
T ss_dssp CCCCTTSEEEEEETT---TEEEEEEEEEEEEETTTTEE
T ss_pred cccCCCCEEEEEeCC---CCEEEEEEEEEEeccCCCce
Confidence 358899999998764 57899999999875323443
No 33
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.02 E-value=38 Score=22.09 Aligned_cols=30 Identities=10% Similarity=0.175 Sum_probs=24.7
Q ss_pred CEEEecCCEEEEEcCCCCCCCCeEEEEeeEeec
Q psy10248 40 GDIIQPRDCILLKSGTRKKDLPFIAKVGALWEN 72 (194)
Q Consensus 40 g~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed 72 (194)
+..+.+||.||.+=.+ ...|.|.|.++-..
T Consensus 5 ~~~f~eGqdVLarWsD---GlfYlgtV~kV~~~ 34 (63)
T 2e5q_A 5 SSGLTEGQYVLCRWTD---GLYYLGKIKRVSSS 34 (63)
T ss_dssp CCCCCTTCEEEEECTT---SCEEEEEECCCCST
T ss_pred ccceecCCEEEEEecC---CCEEEEEEEEEecC
Confidence 4568999999999665 68999999999543
No 34
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=34.15 E-value=20 Score=25.54 Aligned_cols=44 Identities=18% Similarity=0.083 Sum_probs=31.2
Q ss_pred CEEEecCCEEEEEcCCCCCCCCeEEEEeeEee---cC---CCCceEEEEEEee
Q psy10248 40 GDIIQPRDCILLKSGTRKKDLPFIAKVGALWE---NP---EDGEMMVSLLWYY 86 (194)
Q Consensus 40 g~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~e---d~---~~g~~~v~v~Wfy 86 (194)
+..+++||.|..+-.+ -+.|-|+|..--. +. ..+...+-|++|-
T Consensus 3 ~~~~~~GdlVwaK~~g---yP~WPa~V~~~~~~p~~v~~~~~~~~~~~V~FFg 52 (108)
T 2l89_A 3 DDRLNFGDRILVKAPG---YPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFP 52 (108)
T ss_dssp SCCCCTTEEEEEECSS---SCEEEEEEEEEEEEESSSCSSSCEEEEEEEEETT
T ss_pred CCcccCCCEEEEEeCC---cCCCceEecCcccCcHHHhhccCCCCeEEEEECC
Confidence 5578999999999986 8999999976321 11 1224567777775
No 35
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=31.93 E-value=36 Score=22.75 Aligned_cols=32 Identities=13% Similarity=0.050 Sum_probs=23.6
Q ss_pred EEEecCCEEEEEcCCCCCCCCeEEEEeeEeec
Q psy10248 41 DIIQPRDCILLKSGTRKKDLPFIAKVGALWEN 72 (194)
Q Consensus 41 ~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed 72 (194)
..+.+|+.|++.-++......|-|+|.++-..
T Consensus 4 ~~~~vGekV~~~~~d~k~~~~y~AkIl~i~~~ 35 (76)
T 2lcc_A 4 EPCLTGTKVKVKYGRGKTQKIYEASIKSTEID 35 (76)
T ss_dssp CCSSTTCEEEEEEEETTEEEEEEEEEEEEEEE
T ss_pred cccCCCCEEEEEeCCCCCCCEEEEEEEEEEcc
Confidence 35789999999876311246799999998654
No 36
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=31.69 E-value=38 Score=25.14 Aligned_cols=43 Identities=23% Similarity=0.203 Sum_probs=33.7
Q ss_pred EEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeecc
Q psy10248 41 DIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRP 88 (194)
Q Consensus 41 ~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRp 88 (194)
..+.+||.|-|..++ -.-+.|.|.++-.+ .+...+.+.-|-|+
T Consensus 90 ~~~~~Gd~VrI~~Gp---f~g~~g~V~~vd~~--k~~v~V~v~~~gr~ 132 (152)
T 3p8b_B 90 SGLEPGDLVEVIAGP---FKGQKAKVVKIDES--KDEVVVQFIDAIVP 132 (152)
T ss_dssp TTCCTTCEEEECSST---TTTCEEEEEEEETT--TTEEEEEESSCSSC
T ss_pred ccCCCCCEEEEeeec---CCCCEEEEEEEeCC--CCEEEEEEEeccee
Confidence 458899999999986 56789999999654 45677777777664
No 37
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=29.23 E-value=1.1e+02 Score=21.73 Aligned_cols=28 Identities=21% Similarity=0.123 Sum_probs=23.2
Q ss_pred EEEecCCEEEEEcCCCCCCCCeEEEEeeEeec
Q psy10248 41 DIIQPRDCILLKSGTRKKDLPFIAKVGALWEN 72 (194)
Q Consensus 41 ~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed 72 (194)
..+.+|+.|++.-+ ...|-|+|.++...
T Consensus 21 ~~f~vGekVl~~~~----~~~YeAkIl~v~~~ 48 (102)
T 2f5k_A 21 PKFQEGERVLCFHG----PLLYEAKCVKVAIK 48 (102)
T ss_dssp CSCCTTCEEEEESS----SSEEEEEEEEEEEE
T ss_pred cccCCCCEEEEEEC----CEEEEEEEEEEEEc
Confidence 35789999999875 47899999999764
No 38
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=26.60 E-value=93 Score=19.63 Aligned_cols=30 Identities=10% Similarity=-0.025 Sum_probs=22.9
Q ss_pred CEEEecCCEEEEEcCCCCCCCCeEEEEeeEee
Q psy10248 40 GDIIQPRDCILLKSGTRKKDLPFIAKVGALWE 71 (194)
Q Consensus 40 g~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~e 71 (194)
+..+++||.++.+=.. ...-|=|+|.++-.
T Consensus 6 ~~~~~vGd~c~A~~s~--Dg~wYrA~I~~v~~ 35 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSE--DGQCYEAEIEEIDE 35 (64)
T ss_dssp SSCCCTTCEEEEECTT--TSSEEEEEEEEEET
T ss_pred CCCCCCCCEEEEEECC--CCCEEEEEEEEEcC
Confidence 3568999999988542 26788899999964
No 39
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=26.25 E-value=89 Score=21.65 Aligned_cols=28 Identities=14% Similarity=0.042 Sum_probs=22.9
Q ss_pred EEEecCCEEEEEcCCCCCCCCeEEEEeeEeec
Q psy10248 41 DIIQPRDCILLKSGTRKKDLPFIAKVGALWEN 72 (194)
Q Consensus 41 ~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed 72 (194)
..+.+|+.|++..+ ...|-|+|.++...
T Consensus 22 ~~~~vG~kv~v~~~----~~~y~AkIl~ir~~ 49 (92)
T 2ro0_A 22 DDIIIKCQCWVQKN----DEERLAEILSINTR 49 (92)
T ss_dssp TSCCTTCEEEEEET----TEEEEEEEEEEECS
T ss_pred ccccCCCEEEEEEC----CEEEEEEEEEEEEc
Confidence 45889999999864 47899999999764
No 40
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=24.33 E-value=81 Score=23.08 Aligned_cols=29 Identities=10% Similarity=-0.103 Sum_probs=24.7
Q ss_pred EEEecCCEEEEEcCCCCCCCCeEEEEeeEeec
Q psy10248 41 DIIQPRDCILLKSGTRKKDLPFIAKVGALWEN 72 (194)
Q Consensus 41 ~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed 72 (194)
..|+.||.|.|-++. +.--.|+|.++...
T Consensus 41 ~~IkkGD~V~Vi~G~---dKGk~GkV~~V~~k 69 (120)
T 1vq8_T 41 VRVNAGDTVEVLRGD---FAGEEGEVINVDLD 69 (120)
T ss_dssp EECCTTCEEEECSST---TTTCEEEEEEEETT
T ss_pred ccccCCCEEEEEecC---CCCCEEEEEEEECC
Confidence 579999999999986 56689999999754
No 41
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=22.09 E-value=1e+02 Score=21.56 Aligned_cols=28 Identities=14% Similarity=0.042 Sum_probs=22.6
Q ss_pred EEEecCCEEEEEcCCCCCCCCeEEEEeeEeec
Q psy10248 41 DIIQPRDCILLKSGTRKKDLPFIAKVGALWEN 72 (194)
Q Consensus 41 ~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed 72 (194)
..+.+|+.|++..+ ...|-|+|.++...
T Consensus 24 ~~~~vG~kv~v~~~----~~~yeAeIl~ir~~ 51 (94)
T 2rnz_A 24 DDIIIKCQCWVQKN----DEERLAEILSINTR 51 (94)
T ss_dssp GGCCTTEEEEEECS----SCEEEEEEEEEECS
T ss_pred ccccCCCEEEEEEC----CEEEEEEEEEEEEc
Confidence 34789999999864 47899999999764
No 42
>1fry_A Myeloid antimicrobial peptide; random-ordered coil-loop, antimicrobial protein; NMR {Synthetic} SCOP: j.93.1.1
Probab=21.65 E-value=20 Score=19.31 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=15.5
Q ss_pred ccccccccCCceeeeecCC
Q psy10248 2 GLQLLSRSLDPYYFKYGTS 20 (194)
Q Consensus 2 ~~~~~~~~~~~~~~~~g~~ 20 (194)
||.-|+|+.----++||+-
T Consensus 2 glrrlgrkiahgvkkygpt 20 (29)
T 1fry_A 2 GLRRLGRKIAHGVKKYGPT 20 (29)
T ss_dssp CCSSSSTTTSSSTTTTSSS
T ss_pred hHHHHhHHHhhhhhhcCCc
Confidence 7888999988777888764
No 43
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.82 E-value=81 Score=20.89 Aligned_cols=27 Identities=15% Similarity=0.014 Sum_probs=22.7
Q ss_pred EEEecCCEEEEEcCCCCCCCCeEEEEeeEe
Q psy10248 41 DIIQPRDCILLKSGTRKKDLPFIAKVGALW 70 (194)
Q Consensus 41 ~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ 70 (194)
..+++||.|+-+=.+ ..-|-|+|+++-
T Consensus 8 ~~~kvGd~clA~wsD---g~~Y~A~I~~v~ 34 (74)
T 2equ_A 8 FDFKAGEEVLARWTD---CRYYPAKIEAIN 34 (74)
T ss_dssp CCCCTTCEEEEECSS---SSEEEEEEEEES
T ss_pred CCCCCCCEEEEECCC---CCEEEEEEEEEC
Confidence 468999999988665 678999999994
Done!