RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10248
(194 letters)
>gnl|CDD|240065 cd04714, BAH_BAHCC1, BAH, or Bromo Adjacent Homology domain, as
present in mammalian BAHCC1 and similar proteins. BAHCC1
stands for BAH domain and coiled-coil containing 1. BAH
domains are found in a variety of proteins playing roles
in transcriptional silencing and the remodeling of
chromatin. It is assumed that in most or all of these
instances the BAH domain mediates protein-protein
interactions.
Length = 121
Score = 139 bits (351), Expect = 8e-43
Identities = 49/106 (46%), Positives = 68/106 (64%), Gaps = 2/106 (1%)
Query: 40 GDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRD 99
+II+ DC+L KS R LP++A++ +LWE+PE G M+V + WYYRPE T+ G
Sbjct: 1 KEIIRVGDCVLFKSPGRPS-LPYVARIESLWEDPE-GNMVVRVKWYYRPEETKGGRKPNH 58
Query: 100 NKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVV 145
+ E+FAS H+D NSV IE KCYVLT+ EY R + + +D V
Sbjct: 59 GEKELFASDHQDENSVQTIEHKCYVLTFAEYERLARVKKKPQDGVD 104
>gnl|CDD|239835 cd04370, BAH, BAH, or Bromo Adjacent Homology domain (also called
ELM1 and BAM for Bromo Adjacent Motif). BAH domains have
first been described as domains found in the polybromo
protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure
of Chromatin). They also occur in mammalian DNA
methyltransferases and the MTA1 subunits of histone
deacetylase complexes. A BAH domain is also found in
Yeast Sir3p and in the origin receptor complex protein 1
(Orc1p), where it was found to interact with the
N-terminal lobe of the silence information regulator 1
protein (Sir1p), confirming the initial hypothesis that
BAH plays a role in protein-protein interactions.
Length = 123
Score = 66.3 bits (162), Expect = 2e-14
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 40 GDIIQPRDCILLKSG-TRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYR 98
G + D + ++ + K D P+IA++ LWE+ G V + W+YRPE T +G S
Sbjct: 1 GITYEVGDSVYVEPDDSIKSDPPYIARIEELWEDTN-GSKQVKVRWFYRPEETPKGLSPF 59
Query: 99 DNKDEIFASRHRDINSVACIEDKCYVLTYREYCR 132
+ E+F S H D V I KC VL E+
Sbjct: 60 ALRRELFLSDHLDEIPVESIIGKCKVLFVSEFEG 93
>gnl|CDD|216495 pfam01426, BAH, BAH domain. This domain has been called BAH (Bromo
adjacent homology) domain and has also been called ELM1
and BAM (Bromo adjacent motif) domain. The function of
this domain is unknown but may be involved in
protein-protein interaction.
Length = 120
Score = 63.1 bits (154), Expect = 3e-13
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Query: 42 IIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNK 101
D +L++ + P++ ++ ++E+ DG MV + W+YRPE T NK
Sbjct: 2 TYSVGDFVLVEPDDAGE-PPYVGRIEEIFEDK-DGSKMVHVRWFYRPEETVHRLGRAFNK 59
Query: 102 DEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNV 144
DE+F S D + I KC V+ + + + + E +V
Sbjct: 60 DEVFLSDECDDVPLEDIIGKCNVIIKSDPESLQPRKINGEPDV 102
>gnl|CDD|214664 smart00439, BAH, Bromo adjacent homology domain.
Length = 121
Score = 61.2 bits (149), Expect = 2e-12
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 42 IIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGE-MMVSLLWYYRPEHTEQGTSYRDN 100
I D +L++ + +I ++ ++E ++ E MV + W+YRPE T + +
Sbjct: 1 TISVGDFVLVEPDDADE-PYYIGRIEEIFETKKNSESKMVRVRWFYRPEETVLEKAALFD 59
Query: 101 KDEIFASRHRDINSVACIEDKCYVLTYREY--CRYRKKMRSIEDNVVNFKI 149
K+E+F S D ++ I KC VL +Y R + +
Sbjct: 60 KNEVFLSDEYDTVPLSDIIGKCNVLYKSDYPGLRPEGSIGEPDVFFCESAY 110
>gnl|CDD|240068 cd04717, BAH_polybromo, BAH, or Bromo Adjacent Homology domain, as
present in polybromo and yeast RSC1/2. The human
polybromo protein (BAF180) is a component of the SWI/SNF
chromatin-remodeling complex PBAF. It is thought that
polybromo participates in transcriptional regulation.
Saccharomyces cerevisiae RSC1 and RSC2 are part of the
15-subunit nucleosome remodeling RSC complex. BAH
domains are found in a variety of proteins playing roles
in transcriptional silencing and the remodeling of
chromatin. It is assumed that in most or all of these
instances the BAH domain mediates protein-protein
interactions.
Length = 121
Score = 60.3 bits (147), Expect = 3e-12
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 40 GDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRD 99
G + DC+ + + P I ++ LW++ EDGE W+YRPE T + +
Sbjct: 1 GLQYRVGDCVYVAN-PEDPSKPIIFRIERLWKD-EDGEKFFFGCWFYRPEETFHEPTRKF 58
Query: 100 NKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIED 142
K+E+F S + V I KC V+ ++Y + R S ED
Sbjct: 59 YKNEVFKSPLYETVPVEEIVGKCAVMDVKDYIKGRPTEISEED 101
>gnl|CDD|240072 cd04721, BAH_plant_1, BAH, or Bromo Adjacent Homology domain,
plant-specific sub-family with unknown function. BAH
domains are found in a variety of proteins playing roles
in transcriptional silencing and the remodeling of
chromatin. It is assumed that in most or all of these
instances the BAH domain mediates protein-protein
interactions.
Length = 130
Score = 42.0 bits (99), Expect = 2e-05
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 62 FIAKVGALWENPEDGEMMVSLLWY-YRPEHTEQGTSYRDNKDEIFASRHRDINSVACIED 120
++A + L+E+ + G MV + W+ E + N EIF S + + SV CI+
Sbjct: 24 YVAYIEDLYED-KKGSKMVKVRWFHTTDEVGAALSPDSVNPREIFLSPNLQVISVECIDG 82
Query: 121 KCYVLTYREYCRYRKKMRSIEDNVVN 146
VLT Y +K +S+ N
Sbjct: 83 LATVLTREHY----EKFQSVPKNSSE 104
>gnl|CDD|240064 cd04713, BAH_plant_3, BAH, or Bromo Adjacent Homology domain,
plant-specific sub-family with unknown function. BAH
domains are found in a variety of proteins playing roles
in transcriptional silencing and the remodeling of
chromatin. It is assumed that in most or all of these
instances the BAH domain mediates protein-protein
interactions.
Length = 146
Score = 41.7 bits (98), Expect = 3e-05
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 47 DCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQ--GTSYR-DNKDE 103
DC+LL +K P+IA + +++ E+G + + + W YRPE E+ G +++ ++ E
Sbjct: 25 DCVLLVPEDDQK--PYIAIIKDIYKQ-EEGSLKLEVQWLYRPEEIEKKKGGNWKAEDPRE 81
Query: 104 IFASRHRDINSVACIEDKCYV 124
+F S HRD + C V
Sbjct: 82 LFYSFHRDEVPAESVLHPCKV 102
>gnl|CDD|240066 cd04715, BAH_Orc1p_like, BAH, or Bromo Adjacent Homology domain, as
present in the Schizosaccharomyces pombe homolog of
Saccharomyces cerevisiae Orc1p and similar proteins.
Orc1 is part of the Yeast Sir1-origin recognition
complex, the Orc1p BAH doman functions in epigenetic
silencing. BAH domains are found in a variety of
proteins playing roles in transcriptional silencing and
the remodeling of chromatin. It is assumed that in most
or all of these instances the BAH domain mediates
protein-protein interactions.
Length = 159
Score = 37.9 bits (88), Expect = 8e-04
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 11/101 (10%)
Query: 40 GDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPED-GEMMVSLLWYYRP-EHTEQGTSY 97
G + D + + +G + P+I K+ ++E D G+ V ++W++RP E +
Sbjct: 27 GVEYRLYDDVYVHNGDSE---PYIGKIIKIYETAIDSGKKKVKVIWFFRPSEIRMELKGE 83
Query: 98 RD-NKDEIFASRHRD-----INSVACIEDKCYVLTYREYCR 132
+ +E+F + R IN + I KC V+ E R
Sbjct: 84 PKRHINEVFLACGRGEGLANINLLESIIGKCNVVCISEDFR 124
>gnl|CDD|240067 cd04716, BAH_plantDCM_I, BAH, or Bromo Adjacent Homology domain,
first copy present in DNA
(Cytosine-5)-methyltransferases (DCM) from plants. DNA
methylation, or the covalent addition of a methyl group
to cytosine within the context of the CpG dinucleotide,
has profound effects on the genome. These effects
include transcriptional repression via inhibition of
transcription factor binding, the recruitment of
methyl-binding proteins and their associated chromatin
remodeling factors, X chromosome inactivation,
imprinting, and the suppression of parasitic DNA
sequences. DNA methylation is also essential for proper
embryonic development and is an important player in both
DNA repair and genome stability. BAH domains are found
in a variety of proteins playing roles in
transcriptional silencing and the remodeling of
chromatin. It is assumed that in most or all of these
instances the BAH domain mediates protein-protein
interactions.
Length = 122
Score = 35.9 bits (83), Expect = 0.003
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 60 LPFIAKVGALWENPEDGEMMVSLLWYYRPEHT--EQGTSYRDNKDEIFASRHRDINSVAC 117
PFI K+ +E DG+ + W+YR E T E+ + D K +F S ++ N + C
Sbjct: 19 EPFICKITEFFEG-TDGKTYFTAQWFYRAEDTVIERQATNHDKK-RVFYSEIKNDNPLDC 76
Query: 118 IEDKCYVL 125
+ K +L
Sbjct: 77 LISKVKIL 84
>gnl|CDD|240107 cd04760, BAH_Dnmt1_I, BAH, or Bromo Adjacent Homology domain, first
copy present in DNA (Cytosine-5)-methyltransferases from
Bilateria, Dnmt1 and similar proteins. DNA methylation,
or the covalent addition of a methyl group to cytosine
within the context of the CpG dinucleotide, has profound
effects on the genome. These effects include
transcriptional repression via inhibition of
transcription factor binding, the recruitment of
methyl-binding proteins and their associated chromatin
remodeling factors, X chromosome inactivation,
imprinting, and the suppression of parasitic DNA
sequences. DNA methylation is also essential for proper
embryonic development and is an important player in both
DNA repair and genome stability. BAH domains are found
in a variety of proteins playing roles in
transcriptional silencing and the remodeling of
chromatin. It is assumed that in most or all of these
instances the BAH domain mediates protein-protein
interactions.
Length = 124
Score = 34.7 bits (80), Expect = 0.009
Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 40 GDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRD 99
G+ ++ DC+ +K +IA+V +W++ G M W+ R T G +
Sbjct: 1 GEELEAGDCVSVKP-DDPTKPLYIARVTYMWKD-SIGGKMFHAHWFCRGSDTVLGET--S 56
Query: 100 NKDEIFASRHRDINSVACIEDKCYVLTYRE 129
+ E+F + +++ I K V+ Y+
Sbjct: 57 DPLELFLVDECEDMALSSIHGKVNVI-YKA 85
>gnl|CDD|240069 cd04718, BAH_plant_2, BAH, or Bromo Adjacent Homology domain,
plant-specific sub-family with unknown function. BAH
domains are found in a variety of proteins playing roles
in transcriptional silencing and the remodeling of
chromatin. It is assumed that in most or all of these
instances the BAH domain mediates protein-protein
interactions.
Length = 148
Score = 31.8 bits (72), Expect = 0.11
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 63 IAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKC 122
+A++ LWE E+G + WY PE T G + + E++ + + CI C
Sbjct: 55 LARIEKLWE--ENGTYWYAARWYTLPEETHMGRQPHNLRRELYLTNDFADIEMECILRHC 112
Query: 123 YVLTYREY 130
V +E+
Sbjct: 113 SVKCPKEF 120
>gnl|CDD|184548 PRK14165, PRK14165, winged helix-turn-helix domain-containing
protein/riboflavin kinase; Provisional.
Length = 217
Score = 31.6 bits (72), Expect = 0.16
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 118 IEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQY 159
I +K + Y EY Y + + SI+DN+ +V LGEG+Y
Sbjct: 64 ITEKGLDVLYNEYADYSR-IFSIKDNLELEGNVVKGLGEGKY 104
>gnl|CDD|200413 TIGR04162, exo_VPEID, exosortase E/protease, VPEID-CTERM system.
Members of this protein family are fusion proteins of
exosortase (N-terminal) and a CAAX prenyl protease
domain (C-terminal). Members are restricted to the alpha
Proteobacteria. The variant C-terminal protein sequence
VPEID-CTERM occurs only in these species, often
adjacent.
Length = 519
Score = 31.7 bits (72), Expect = 0.23
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 11/40 (27%)
Query: 60 LPFI------AKVGALWENPEDG-----EMMVSLLWYYRP 88
+PFI V +LW NP G M + LW + P
Sbjct: 332 VPFILFMLSGVLVQSLWANPAQGYPLRAAFMAAGLWLFWP 371
>gnl|CDD|152611 pfam12176, MtaB, Methanol-cobalamin methyltransferase B subunit.
This family of proteins is found in bacteria and
archaea. Proteins in this family are approximately 460
amino acids in length. MtaB folds as a TIM barrel and
contains a novel zinc-binding motif. Zinc(II) lies at
the bottom of a funnel formed at the C-terminal
beta-barrel end and ligates to two cysteinyl sulfurs
(Cys-220 and Cys-269) and one carboxylate oxygen
(Glu-164). The function of this protein is to catalyze
the cleavage of the C O bond in methanol by an SN2
mechanism. It complexes with MtaA and MtaC to perform
this function.
Length = 460
Score = 29.0 bits (65), Expect = 1.8
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 12/47 (25%)
Query: 10 LDPYYFKYGTSTSDEHPVVRNCYPAMRHIQGDIIQPRDCILLKSGTR 56
++ Y+ KYG A+RH DI + R+ + L+ G +
Sbjct: 108 MEEYHDKYGIKC------------ALRHTIADIREEREFLGLRRGDK 142
>gnl|CDD|240061 cd04710, BAH_fungalPHD, BAH, or Bromo Adjacent Homology domain, as
present in fungal proteins containing PHD domains. BAH
domains are found in a variety of proteins playing roles
in transcriptional silencing and the remodeling of
chromatin. It is assumed that in most or all of these
instances the BAH domain mediates protein-protein
interactions.
Length = 135
Score = 27.7 bits (62), Expect = 2.0
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 79 MVSLLWYYRPEHTEQGTSYRDNKDE--IFASRHRDINSVACIEDKCYV 124
V L WYYRP + S R D ++AS H DI + + KC V
Sbjct: 58 QVRLNWYYRP----RDISRRVVADSRLLYASMHSDICPIGSVRGKCTV 101
>gnl|CDD|216762 pfam01883, DUF59, Domain of unknown function DUF59. This family
has an alpha/beta topology, with 13 conserved
hydrophobic residues at its core and a putative active
site containing a highly conserved cysteine. Members of
this family are involved in a range of physiological
functions. The family includes PaaJ (PhaH) from
Pseudomonas putida. PaaJ forms a complex with PaaG
(PhaF), PaaI (PhaG) and PaaK (PhaI), which hydroxylates
phenylacetic acid to 2-hydroxyphenylacetic acid. It also
includes PaaD from Escherichia coli, a member of a
multicomponent oxygenase involved in phenylacetyl-CoA
hydroxylation. It is found near the N-terminus of the
chloroplast scaffold protein HCF101, involved in the
assembly of [4Fe-4S] clusters and their transfer to
apoproteins.
Length = 72
Score = 26.8 bits (60), Expect = 2.1
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 139 SIEDNVVNFKIIVPPLGEGQYERLLRQ 165
+IE V F I + Q E + +
Sbjct: 30 TIEGGKVRFDIELTYPACPQMEPIRKA 56
>gnl|CDD|238552 cd01132, F1_ATPase_alpha, F1 ATP synthase alpha, central domain.
The F-ATPase is found in bacterial plasma membranes,
mitochondrial inner membranes and in chloroplast
thylakoid membranes. It has also been found in the
archaea Methanosarcina barkeri. It uses a proton
gradient to drive ATP synthesis and hydrolyzes ATP to
build the proton gradient. The extrinisic membrane
domain, F1, is composed of alpha, beta, gamma, delta and
epsilon subunits with a stoichiometry of 3:3:1:1:1. The
alpha subunit of the F1 ATP synthase can bind
nucleotides, but is non-catalytic.
Length = 274
Score = 28.4 bits (64), Expect = 2.5
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 162 LLRQPPG-QVSPDRVFYCH 179
LLR+PPG + P VFY H
Sbjct: 183 LLRRPPGREAYPGDVFYLH 201
>gnl|CDD|183987 PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.
Length = 502
Score = 28.3 bits (64), Expect = 2.6
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 162 LLRQPPG-QVSPDRVFYCH 179
LLR+PPG + P +FY H
Sbjct: 276 LLRRPPGREAYPGDIFYLH 294
>gnl|CDD|240063 cd04712, BAH_DCM_I, BAH, or Bromo Adjacent Homology domain, as
present in DNA (Cytosine-5)-methyltransferases (DCM) 1.
DNA methylation, or the covalent addition of a methyl
group to cytosine within the context of the CpG
dinucleotide, has profound effects on the genome. These
effects include transcriptional repression via
inhibition of transcription factor binding, the
recruitment of methyl-binding proteins and their
associated chromatin remodeling factors, X chromosome
inactivation, imprinting, and the suppression of
parasitic DNA sequences. DNA methylation is also
essential for proper embryonic development and is an
important player in both DNA repair and genome
stability. BAH domains are found in a variety of
proteins playing roles in transcriptional silencing and
the remodeling of chromatin. It is assumed that in most
or all of these instances the BAH domain mediates
protein-protein interactions.
Length = 130
Score = 27.0 bits (60), Expect = 4.5
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 10/63 (15%)
Query: 38 IQGDIIQPRDCILL-----KSGTRKKD----LPFIAKVGALWENPEDGEMMVSLLWYYRP 88
I G I+ D + + S T+ D LP + V + DG M W YR
Sbjct: 1 IHGLTIRVGDVVSVERDDADSTTKWNDDHRWLPLVQFV-EYMKKGSDGSKMFHGRWLYRG 59
Query: 89 EHT 91
T
Sbjct: 60 CDT 62
>gnl|CDD|176999 CHL00059, atpA, ATP synthase CF1 alpha subunit.
Length = 485
Score = 27.2 bits (61), Expect = 5.4
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 8/30 (26%)
Query: 162 LLRQPPG-QVSPDRVFYCHKVYDFRTKRLL 190
LLR+PPG + P VFY H RLL
Sbjct: 255 LLRRPPGREAYPGDVFYLH-------SRLL 277
>gnl|CDD|177537 PHA03134, PHA03134, thymidine kinase; Provisional.
Length = 340
Score = 27.1 bits (60), Expect = 6.4
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 23 DEHPVVRN-CYPAMRHIQGDI 42
D HPV C+P R++ GD+
Sbjct: 126 DRHPVASCVCFPLARYLLGDM 146
>gnl|CDD|188640 cd00953, KDG_aldolase, KDG (2-keto-3-deoxygluconate) aldolases
found in archaea. KDG (2-keto-3-deoxygluconate)
aldolases found in archaea. This subfamily of enzymes is
adapted for high thermostability and shows specificity
for non-phosphorylated substrates. The enzyme catalyses
the reversible aldol cleavage of 2-keto-3-dexoygluconate
to pyruvate and glyceraldehyde, the third step of a
modified non-phosphorylated Entner-Doudoroff pathway of
glucose oxidation. KDG aldolase shows no significant
sequence similarity to microbial
2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the
enzyme shows no activity with glyceraldehyde 3-phosphate
as substrate. The enzyme is a tetramer and a member of
the DHDPS family of Schiff-base-dependent class I
aldolases.
Length = 279
Score = 27.0 bits (60), Expect = 7.2
Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 9/36 (25%)
Query: 9 SLDPYYF---------KYGTSTSDEHPVVRNCYPAM 35
SL PYYF KY T S +P YP
Sbjct: 97 SLPPYYFPGIPEEWLIKYFTDISSPYPTFIYNYPKA 132
>gnl|CDD|216065 pfam00693, Herpes_TK, Thymidine kinase from herpesvirus.
Length = 279
Score = 26.5 bits (59), Expect = 8.5
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 22 SDEHPVVRN-CYPAMRHIQGDI 42
D HPV C+P R++ GD+
Sbjct: 106 FDRHPVAATLCFPLARYLLGDM 127
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.141 0.446
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,208,401
Number of extensions: 946052
Number of successful extensions: 658
Number of sequences better than 10.0: 1
Number of HSP's gapped: 650
Number of HSP's successfully gapped: 31
Length of query: 194
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 102
Effective length of database: 6,857,034
Effective search space: 699417468
Effective search space used: 699417468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)