RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10248
         (194 letters)



>d1m4za_ b.34.12.1 (A:) Origin-recognition complex protein 120kDa
           subunit, Orc1p {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 217

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 11/118 (9%), Positives = 26/118 (22%), Gaps = 34/118 (28%)

Query: 73  PEDGEMMVSLLWYYRPEHTEQGTSYRD-NKDEIFASRHRDINSVACIEDKCYVLTYREYC 131
               +         RP +          NK+E++ +       +        V+   ++ 
Sbjct: 103 AHYRQFNPDANILNRPLNYYNKLFSETANKNELYLTAELAELQLFNFIRVANVMDGSKW- 161

Query: 132 RYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRL 189
                                               G V P+R F    + +   ++ 
Sbjct: 162 --------------------------------EVLKGNVDPERDFTVRYICEPTGEKF 187


>d1foea2 b.55.1.1 (A:1240-1401) GEF of TIAM1 (T-Lymphoma invasion
           and metastasis inducing protein 1) {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 162

 Score = 24.4 bits (53), Expect = 9.1
 Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 7/50 (14%)

Query: 110 RDINSVACIEDKCYVLTYREYCRYRKKM-------RSIEDNVVNFKIIVP 152
           ++    A +     VL Y++  + +KK+          E +   F+ ++P
Sbjct: 48  KEPELAAFVFKTAVVLVYKDGSKQKKKLVGSHRLSIYEEWDPFRFRHMIP 97


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.141    0.446 

Gapped
Lambda     K      H
   0.267   0.0585    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 797,363
Number of extensions: 37890
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 3
Length of query: 194
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 113
Effective length of database: 1,295,466
Effective search space: 146387658
Effective search space used: 146387658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.4 bits)