Query psy10249
Match_columns 91
No_of_seqs 111 out of 808
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 21:40:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10249.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10249hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3700|consensus 99.8 1.5E-19 3.2E-24 144.0 5.7 79 9-87 557-635 (705)
2 COG1835 Predicted acyltransfer 98.3 1.5E-06 3.2E-11 64.9 5.8 51 25-77 272-322 (386)
3 PF01757 Acyl_transf_3: Acyltr 97.3 0.0011 2.3E-08 45.8 6.2 27 50-76 284-310 (340)
4 PRK03854 opgC glucans biosynth 96.3 0.0071 1.5E-07 45.0 4.5 26 49-74 303-328 (375)
5 PF04235 DUF418: Protein of un 90.0 1.9 4.1E-05 28.4 6.4 26 49-74 84-109 (163)
6 COG3936 Protein involved in po 89.3 0.48 1E-05 35.3 3.3 29 44-72 265-293 (349)
7 COG3594 NolL Fucose 4-O-acetyl 66.4 12 0.00026 28.4 4.3 56 14-75 232-287 (343)
8 PRK10835 hypothetical protein; 59.4 19 0.00041 27.2 4.2 23 50-72 293-315 (373)
9 PF07786 DUF1624: Protein of u 44.9 11 0.00023 25.9 0.9 21 48-68 203-223 (223)
10 COG2311 Predicted membrane pro 43.5 33 0.00072 26.6 3.4 27 48-74 304-330 (394)
11 PF03134 TB2_DP1_HVA22: TB2/DP 42.5 15 0.00032 22.0 1.2 40 28-67 38-77 (94)
12 TIGR00327 secE_euk_arch protei 30.2 68 0.0015 18.3 2.5 19 52-70 39-57 (61)
13 PF00858 ASC: Amiloride-sensit 28.1 31 0.00068 25.4 1.1 34 18-51 20-53 (439)
No 1
>KOG3700|consensus
Probab=99.78 E-value=1.5e-19 Score=144.02 Aligned_cols=79 Identities=32% Similarity=0.568 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhHhhhccccchhhcccccchhhhhhhHHHHHHHHHHHHHHHHhhccccceeeeeee
Q psy10249 9 DRLDAANYAAFAPITWCLVFMWVIFLSYTGNAGFLGRLASWKVFLVCTRISYTFYLTQFPLFFYNVGTMRGAQQYSFGL 87 (91)
Q Consensus 9 ~~~~~a~y~~l~R~~w~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~lgrlSY~~YL~h~~vi~~~~~~~~~~~~~~~~~ 87 (91)
+.+..|+|.+++|..|+++++|++++|.+|.+|++++||+||+|||+||+|||+|++|++|+..+.+..+...|.++..
T Consensus 557 ~~~~~a~y~~~~R~~W~lal~wvI~a~~~g~gg~i~~fls~p~wqplsrLSy~aYlvH~~v~~~~~~~~~~~~~~s~~~ 635 (705)
T KOG3700|consen 557 SLFSEALYYAFSRIAWSLALSWVIFACHTGYGGPINAFLSHPLWQPLSRLSYCAYLVHMPVLYYFLGSGRPHFYSSNQV 635 (705)
T ss_pred hHhhhHHhheeHHHHHHHHHHHHHHHhhCCCccchhhhccCcccceehhhhhHHHHHHHHHHHHHhcCCCCcccccchh
Confidence 4467889999999999999999999999999999999999999999999999999999999999999999555554443
No 2
>COG1835 Predicted acyltransferases [Lipid metabolism]
Probab=98.31 E-value=1.5e-06 Score=64.86 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=38.5
Q ss_pred HHHHHHhhHhhhccccchhhcccccchhhhhhhHHHHHHHHHHHHHHHHhhcc
Q psy10249 25 CLVFMWVIFLSYTGNAGFLGRLASWKVFLVCTRISYTFYLTQFPLFFYNVGTM 77 (91)
Q Consensus 25 ~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~lgrlSY~~YL~h~~vi~~~~~~~ 77 (91)
+++...++.++....++ ++++++|+++.+|++||++||+|+|++.......
T Consensus 272 ~l~~~~li~~~~~~~~~--~~~l~~~~~~~lG~~SYslYL~H~pv~~~~~~~~ 322 (386)
T COG1835 272 SLGAALLVLAVAALVGG--SRLLSSRPLVFLGDISYSLYLWHWPVLVFLLYLV 322 (386)
T ss_pred HHHHHHHHHhhcccccc--ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444554444444 8999999999999999999999999988765543
No 3
>PF01757 Acyl_transf_3: Acyltransferase family; InterPro: IPR002656 This entry contains a range of acyltransferase enzymes as well as yet uncharacterised proteins from Caenorhabditis elegans. It also includes the protein OatA. The pathogenic bacteria, Staphylococcus aureus, is able to cause persistent infections due to its ability to resist the immune defence system. Lysozyme, a cell wall-lytic enzyme, is one of the first defence compounds induced in serum and tissues after the onset of infection. S. aureus has complete resistance to lysozyme action by O-acetylating its peptidoglycan (PG) by O-acetyltransferase (OatA) [, ]. Staphylococcus bacteria are one of the only bacterial genera that are resistant to lysozyme and tend to colonise the skin and mucosa of humans and animals []. OatA is an integral membrane protein. This entry also includes NolL proteins. NolL-dependent acetylation is specific for the fucosyl penta-N-acetylglucosamine species. In addition, the NolL protein caused elevated production of lipo-chitin oligosaccharides (LCOs). The NolL protein obtained from Rhizobium loti (Mesorhizobium loti) functions as an acetyl transferase [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=97.27 E-value=0.0011 Score=45.84 Aligned_cols=27 Identities=33% Similarity=0.572 Sum_probs=23.3
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhhc
Q psy10249 50 KVFLVCTRISYTFYLTQFPLFFYNVGT 76 (91)
Q Consensus 50 ~~~~~lgrlSY~~YL~h~~vi~~~~~~ 76 (91)
|.++.+||.||++||+|.+++......
T Consensus 284 ~~l~~lg~~S~~iYl~H~~v~~~~~~~ 310 (340)
T PF01757_consen 284 KILSFLGRYSYGIYLIHFPVIFILRKL 310 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999987765443
No 4
>PRK03854 opgC glucans biosynthesis protein; Provisional
Probab=96.29 E-value=0.0071 Score=44.96 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=22.2
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHh
Q psy10249 49 WKVFLVCTRISYTFYLTQFPLFFYNV 74 (91)
Q Consensus 49 ~~~~~~lgrlSY~~YL~h~~vi~~~~ 74 (91)
.|.++.+|+.||++||+|.+++....
T Consensus 303 ~~~l~~lg~~Sy~iYL~H~pv~~~~~ 328 (375)
T PRK03854 303 SPRVTYLVNASLFIYLVHHPLTLFFG 328 (375)
T ss_pred cHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 56789999999999999988877643
No 5
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=89.97 E-value=1.9 Score=28.41 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=22.3
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHh
Q psy10249 49 WKVFLVCTRISYTFYLTQFPLFFYNV 74 (91)
Q Consensus 49 ~~~~~~lgrlSY~~YL~h~~vi~~~~ 74 (91)
.+++.++||+|.+.|+.|-++....+
T Consensus 84 ~~~l~~~GrmaLT~Yi~qsii~~~lf 109 (163)
T PF04235_consen 84 LRPLAAVGRMALTNYILQSIIGTLLF 109 (163)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 46789999999999999998876644
No 6
>COG3936 Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]
Probab=89.33 E-value=0.48 Score=35.34 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=24.9
Q ss_pred hcccccchhhhhhhHHHHHHHHHHHHHHH
Q psy10249 44 GRLASWKVFLVCTRISYTFYLTQFPLFFY 72 (91)
Q Consensus 44 ~~~l~~~~~~~lgrlSY~~YL~h~~vi~~ 72 (91)
+.-+++++.+.+|..||.+||+|+-++..
T Consensus 265 k~~l~~~pl~fisn~sf~IYLlH~~ilv~ 293 (349)
T COG3936 265 KFRLSSKPLLFISNISFEIYLLHMKILVA 293 (349)
T ss_pred HHHHcCCchhHhHhhHHHHHHHHHHHHHH
Confidence 44588899999999999999999977655
No 7
>COG3594 NolL Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]
Probab=66.43 E-value=12 Score=28.41 Aligned_cols=56 Identities=7% Similarity=-0.177 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhhccccchhhcccccchhhhhhhHHHHHHHHHHHHHHHHhh
Q psy10249 14 ANYAAFAPITWCLVFMWVIFLSYTGNAGFLGRLASWKVFLVCTRISYTFYLTQFPLFFYNVG 75 (91)
Q Consensus 14 a~y~~l~R~~w~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~lgrlSY~~YL~h~~vi~~~~~ 75 (91)
..+.++.|..+..-.++.+..+...-.. ..++.+.+||-|--+|++|-.++....+
T Consensus 232 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~lG~~TL~I~~lHg~v~~~~~~ 287 (343)
T COG3594 232 IFVGGLLRALVLGLALNALVRFAAKIPQ------LRKLVTKLGKNTLYIYLLHGFVFKVLRL 287 (343)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhccH------HHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444442222 3567899999999999999999887664
No 8
>PRK10835 hypothetical protein; Provisional
Probab=59.37 E-value=19 Score=27.17 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=20.2
Q ss_pred chhhhhhhHHHHHHHHHHHHHHH
Q psy10249 50 KVFLVCTRISYTFYLTQFPLFFY 72 (91)
Q Consensus 50 ~~~~~lgrlSY~~YL~h~~vi~~ 72 (91)
+++.+.||+|.+-|+.|-++...
T Consensus 293 ~~la~~GrmaLTnYl~QSii~~~ 315 (373)
T PRK10835 293 LAIACVGRMALTNYLLQTLICTT 315 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999988443
No 9
>PF07786 DUF1624: Protein of unknown function (DUF1624); InterPro: IPR012429 These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.
Probab=44.86 E-value=11 Score=25.91 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=18.1
Q ss_pred ccchhhhhhhHHHHHHHHHHH
Q psy10249 48 SWKVFLVCTRISYTFYLTQFP 68 (91)
Q Consensus 48 ~~~~~~~lgrlSY~~YL~h~~ 68 (91)
..+..+.+||-|--+|++|.|
T Consensus 203 ~~~~l~~~G~~sL~iY~~hqp 223 (223)
T PF07786_consen 203 LIRPLAFLGRHSLLIYLIHQP 223 (223)
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 456789999999999999964
No 10
>COG2311 Predicted membrane protein [Function unknown]
Probab=43.54 E-value=33 Score=26.56 Aligned_cols=27 Identities=22% Similarity=0.181 Sum_probs=22.6
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHh
Q psy10249 48 SWKVFLVCTRISYTFYLTQFPLFFYNV 74 (91)
Q Consensus 48 ~~~~~~~lgrlSY~~YL~h~~vi~~~~ 74 (91)
-++++..+||++.+-||.|-+|....+
T Consensus 304 ~~~~~A~vGRmALTNYLlQSiv~T~iF 330 (394)
T COG2311 304 LLRAFAAVGRMALTNYLLQSIVCTTIF 330 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999998865543
No 11
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.
Probab=42.55 E-value=15 Score=22.05 Aligned_cols=40 Identities=20% Similarity=0.416 Sum_probs=33.3
Q ss_pred HHHhhHhhhccccchhhcccccchhhhhhhHHHHHHHHHH
Q psy10249 28 FMWVIFLSYTGNAGFLGRLASWKVFLVCTRISYTFYLTQF 67 (91)
Q Consensus 28 ~~~~i~~~~~~~~~~l~~~l~~~~~~~lgrlSY~~YL~h~ 67 (91)
.-|++++...--...+..++++-++-..-|+-..++|.|+
T Consensus 38 ~YWiv~~~~~~~e~~~~~~l~~iP~y~~~K~~~~~wL~~p 77 (94)
T PF03134_consen 38 TYWIVYGLFTLFESFLDFILSWIPFYYEFKLLFLVWLQLP 77 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHcC
Confidence 4677777777666778888899999999999999999876
No 12
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=30.19 E-value=68 Score=18.29 Aligned_cols=19 Identities=16% Similarity=0.424 Sum_probs=15.8
Q ss_pred hhhhhhHHHHHHHHHHHHH
Q psy10249 52 FLVCTRISYTFYLTQFPLF 70 (91)
Q Consensus 52 ~~~lgrlSY~~YL~h~~vi 70 (91)
+..+|-+.|-++|+|.|+-
T Consensus 39 ~~i~G~IGf~Ikli~~pi~ 57 (61)
T TIGR00327 39 IIIVGIIGYIIKIIAIPIR 57 (61)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5678889999999998874
No 13
>PF00858 ASC: Amiloride-sensitive sodium channel; InterPro: IPR001873 The apical membrane of many tight epithelia contains sodium channels that are primarily characterised by their high affinity to the diuretic blocker amiloride [, , , ]. These channels mediate the first step of active sodium reabsorption essential for the maintenance of body salt and water homeostasis []. In vertebrates, the channels control reabsorption of sodium in kidney, colon, lung and sweat glands; they also play a role in taste perception. Members of the epithelial Na+ channel (ENaC) family fall into four subfamilies, termed alpha, beta, gamma and delta []. The proteins exhibit the same apparent topology, each with two transmembrane (TM) spanning segments, separated by a large extracellular loop. In most ENaC proteins studied to date, the extracellular domains are highly conserved and contain numerous cysteine residues, with flanking C-terminal amphipathic TM regions, postulated to contribute to the formation of the hydrophilic pores of the oligomeric channel protein complexes. It is thought that the well-conserved extracellular domains serve as receptors to control the activities of the channels. Vertebrate ENaC proteins are similar to degenerins of Caenorhabditis elegans []: deg-1, del-1, mec-4, mec-10 and unc-8. These proteins can be mutated to cause neuronal degradation, and are also thought to form sodium channels. Structurally, the proteins that belong to this family consist of about 510 to 920 amino acid residues. They are made of an intracellular N terminus region followed by a transmembrane domain, a large extracellular loop, a second transmembrane segment and a C-terminal intracellular tail [].; GO: 0005272 sodium channel activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 2QTS_B 3S3W_C 3IJ4_A 3S3X_A 3HGC_A 2K2B_A.
Probab=28.06 E-value=31 Score=25.42 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhhHhhhccccchhhcccccch
Q psy10249 18 AFAPITWCLVFMWVIFLSYTGNAGFLGRLASWKV 51 (91)
Q Consensus 18 ~l~R~~w~~~~~~~i~~~~~~~~~~l~~~l~~~~ 51 (91)
.+.|.+|.+.+...++++.......+.+++++|.
T Consensus 20 ~~~R~~W~~~~~~~~~~~~~~~~~~~~~y~~~p~ 53 (439)
T PF00858_consen 20 WFERLFWLLVVVVSFILFIYQIYLLIERYLSYPT 53 (439)
T ss_dssp -HCHHHHHHHHHHHHHHHHHHHHHHHHHHTT--E
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCE
Confidence 4669999998887777777766677777777765
Done!