Query psy10249
Match_columns 91
No_of_seqs 111 out of 808
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 21:40:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10249.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10249hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ww9_B Protein transport prote 37.2 39 0.0013 19.5 3.2 22 51-72 57-78 (80)
2 2wwb_B SEC61gamma, protein tra 26.9 29 0.001 19.4 1.5 20 51-70 43-62 (68)
3 1kf6_C Fumarate reductase 15 k 25.8 1.1E+02 0.0036 19.3 4.0 47 25-71 39-87 (130)
4 1rh5_B Preprotein translocase 23.2 73 0.0025 18.0 2.7 23 52-74 45-67 (74)
5 1q02_A Sequestosome 1; helical 11.2 70 0.0024 17.0 0.5 19 32-50 18-36 (52)
6 2akh_X Protein-export membrane 10.6 2.2E+02 0.0076 15.8 2.6 22 15-36 48-69 (77)
7 3mp7_B Preprotein translocase 10.4 2.4E+02 0.0082 15.1 2.7 18 52-69 41-58 (61)
8 2qts_A Acid-sensing ION channe 10.2 84 0.0029 22.5 0.8 19 19-37 17-35 (438)
9 2ou2_A Histone acetyltransfera 9.2 1.1E+02 0.0039 21.6 1.1 23 49-71 177-199 (280)
10 2lbf_A 60S acidic ribosomal pr 9.1 1.4E+02 0.0048 16.4 1.3 10 58-67 9-18 (69)
No 1
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=37.23 E-value=39 Score=19.54 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=17.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHH
Q psy10249 51 VFLVCTRISYTFYLTQFPLFFY 72 (91)
Q Consensus 51 ~~~~lgrlSY~~YL~h~~vi~~ 72 (91)
.+..+|-+.|-++|+|.|+-..
T Consensus 57 G~~imG~IGfiIkLI~iPInnI 78 (80)
T 2ww9_B 57 GFIAVGIIGYAIKLIHIPIRYV 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhh
Confidence 3667899999999999998543
No 2
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=26.92 E-value=29 Score=19.39 Aligned_cols=20 Identities=20% Similarity=0.311 Sum_probs=16.8
Q ss_pred hhhhhhhHHHHHHHHHHHHH
Q psy10249 51 VFLVCTRISYTFYLTQFPLF 70 (91)
Q Consensus 51 ~~~~lgrlSY~~YL~h~~vi 70 (91)
.+..+|-+.|-++|+|.|+-
T Consensus 43 G~~i~G~IGf~IklI~ipin 62 (68)
T 2wwb_B 43 GFAIMGFIGFFVKLIHIPIN 62 (68)
T ss_dssp HHHHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999998874
No 3
>1kf6_C Fumarate reductase 15 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_C* 1l0v_C* 2b76_C* 3cir_C* 3p4p_C* 3p4q_C* 3p4r_C* 3p4s_C*
Probab=25.81 E-value=1.1e+02 Score=19.33 Aligned_cols=47 Identities=13% Similarity=0.244 Sum_probs=34.0
Q ss_pred HHHHHHhhHhhhccccch--hhcccccchhhhhhhHHHHHHHHHHHHHH
Q psy10249 25 CLVFMWVIFLSYTGNAGF--LGRLASWKVFLVCTRISYTFYLTQFPLFF 71 (91)
Q Consensus 25 ~~~~~~~i~~~~~~~~~~--l~~~l~~~~~~~lgrlSY~~YL~h~~vi~ 71 (91)
++.+.+.+++...|..++ .-.++++|....+.=++-.+=|.|-.=.+
T Consensus 39 ~l~Ll~Gl~~L~~G~~aw~~fv~fl~nPivvilniiaLaa~L~Ha~TwF 87 (130)
T 1kf6_C 39 SIELIFGLFALKNGPEAWAGFVDFLQNPVIVIINLITLAAALLHTKTWF 87 (130)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666555554443 45899999999999999988888865443
No 4
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=23.24 E-value=73 Score=18.01 Aligned_cols=23 Identities=9% Similarity=-0.122 Sum_probs=18.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHh
Q psy10249 52 FLVCTRISYTFYLTQFPLFFYNV 74 (91)
Q Consensus 52 ~~~lgrlSY~~YL~h~~vi~~~~ 74 (91)
+..+|-+.|-++|+|.++.....
T Consensus 45 ~~imG~IGfiIkli~ipIn~ii~ 67 (74)
T 1rh5_B 45 ISLLGIIGYIIHVPATYIKGILK 67 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcccC
Confidence 55778899999999998865543
No 5
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=11.22 E-value=70 Score=16.99 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=13.3
Q ss_pred hHhhhccccchhhcccccc
Q psy10249 32 IFLSYTGNAGFLGRLASWK 50 (91)
Q Consensus 32 i~~~~~~~~~~l~~~l~~~ 50 (91)
.-.-+...+||+.++|+.+
T Consensus 18 l~MGF~negGWLt~LL~~k 36 (52)
T 1q02_A 18 LSMGFSDEGGWLTRLLQTK 36 (52)
T ss_dssp HTTTCCCTTSHHHHHHHHT
T ss_pred HHcCCCccccHHHHHHHHc
Confidence 3344567889999988654
No 6
>2akh_X Protein-export membrane protein SECG; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_X
Probab=10.65 E-value=2.2e+02 Score=15.76 Aligned_cols=22 Identities=14% Similarity=0.057 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhhHhhh
Q psy10249 15 NYAAFAPITWCLVFMWVIFLSY 36 (91)
Q Consensus 15 ~y~~l~R~~w~~~~~~~i~~~~ 36 (91)
.-..+.|..|.+++.|++.+..
T Consensus 48 ~~~~L~k~T~~la~~F~v~sl~ 69 (77)
T 2akh_X 48 SGNFMTRMTALLATLFFIISLV 69 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999888776544
No 7
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=10.37 E-value=2.4e+02 Score=15.12 Aligned_cols=18 Identities=6% Similarity=0.124 Sum_probs=13.3
Q ss_pred hhhhhhHHHHHHHHHHHH
Q psy10249 52 FLVCTRISYTFYLTQFPL 69 (91)
Q Consensus 52 ~~~lgrlSY~~YL~h~~v 69 (91)
+..+|-+.|-++|+|..+
T Consensus 41 ~~i~G~iGf~Ikli~~~l 58 (61)
T 3mp7_B 41 IILIGLIGMLIRIVGILI 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456778888888888654
No 8
>2qts_A Acid-sensing ION channel; trimer, membrane protein; HET: MAL NAG; 1.90A {Gallus gallus} PDB: 3hgc_A 3ij4_A
Probab=10.24 E-value=84 Score=22.54 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhhHhhhc
Q psy10249 19 FAPITWCLVFMWVIFLSYT 37 (91)
Q Consensus 19 l~R~~w~~~~~~~i~~~~~ 37 (91)
+.|..|.+.+...+..+..
T Consensus 17 ~eR~~W~~~~l~s~~~~~~ 35 (438)
T 2qts_A 17 LKRVVWALCFMGSLALLAL 35 (438)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4578887765544444443
No 9
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=9.15 E-value=1.1e+02 Score=21.61 Aligned_cols=23 Identities=26% Similarity=0.099 Sum_probs=17.7
Q ss_pred cchhhhhhhHHHHHHHHHHHHHH
Q psy10249 49 WKVFLVCTRISYTFYLTQFPLFF 71 (91)
Q Consensus 49 ~~~~~~lgrlSY~~YL~h~~vi~ 71 (91)
-|++-.||++||-.|=-.-++-.
T Consensus 177 EkPLSdLG~~sYr~YW~~~i~~~ 199 (280)
T 2ou2_A 177 EKPLSDLGLLSYRSYWSQTILEI 199 (280)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Confidence 56788999999999976555533
No 10
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=9.06 E-value=1.4e+02 Score=16.38 Aligned_cols=10 Identities=10% Similarity=0.079 Sum_probs=7.5
Q ss_pred HHHHHHHHHH
Q psy10249 58 ISYTFYLTQF 67 (91)
Q Consensus 58 lSY~~YL~h~ 67 (91)
.+|++||+|-
T Consensus 9 ~~YAAllL~~ 18 (69)
T 2lbf_A 9 CIYSALILHD 18 (69)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 4788888774
Done!