RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10249
         (91 letters)



>gnl|CDD|212002 TIGR04279, TIGR04279, TIGR04279 methanogen extracellular domain.
           This domain, with length just over 300 amino acids,
           occurs in predicted extracellular proteins in a number
           of methanogens, in one to three proteins per genome. The
           aromatic residue tyrosine, comprising about five percent
           of the amino acid composition, is overrepresented among
           the most highly conserved columns of the multiple
           sequence alignment. The three members of this family in
           Methanosarcina barkeri occur all within a six-gene
           region.
          Length = 316

 Score = 27.4 bits (61), Expect = 1.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 2   GDMNYTYDRLDAANYAA 18
           GD++ TY  LDA +Y  
Sbjct: 128 GDLSITYGSLDAGSYGI 144


>gnl|CDD|99980 cd03808, GT1_cap1E_like, This family is most closely related to the
           GT1 family of glycosyltransferases. cap1E in
           Streptococcus pneumoniae is required for the synthesis
           of type 1 capsular polysaccharides.
          Length = 359

 Score = 27.1 bits (61), Expect = 1.3
 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 32  IFLSYTGNAGFLGRLASWKVFLVCTRISYTF 62
           I  ++T   G LGRLA+        ++ YT 
Sbjct: 83  IVHTHTPKPGILGRLAARLAG--VPKVIYTV 111


>gnl|CDD|151320 pfam10871, DUF2748, Protein of unknown function (DUF2748).  This is
           a bacterial family of proteins with unknown function.
          Length = 452

 Score = 26.5 bits (58), Expect = 2.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 22  ITWCLVFMWVIFLSYTGNAGFLGRLASWK 50
           I W L+    +F+SY+ N G +  +ASWK
Sbjct: 133 IHWLLLEKTEVFISYSHNIGDMMDIASWK 161


>gnl|CDD|237528 PRK13840, PRK13840, sucrose phosphorylase; Provisional.
          Length = 495

 Score = 25.8 bits (57), Expect = 3.3
 Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 2/25 (8%)

Query: 5   NYTYDRLDAANYAAFAPITWCLVFM 29
           + T  RLDAA YA     T C  FM
Sbjct: 186 HVTLIRLDAAGYAIKKAGTSC--FM 208


>gnl|CDD|224748 COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].
          Length = 386

 Score = 25.5 bits (56), Expect = 3.8
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 19  FAPITWCLVFMWVIFLSYTGNAGFLGRLASWKVFLVCTRISYTFYLTQFPLF 70
              +   L    ++        G   RL S +  +    ISY+ YL  +P+ 
Sbjct: 266 DLLLVPSLGAALLVLAVAALVGG--SRLLSSRPLVFLGDISYSLYLWHWPVL 315


>gnl|CDD|178613 PLN03055, PLN03055, AMP deaminase; Provisional.
          Length = 602

 Score = 25.6 bits (56), Expect = 4.7
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 14/49 (28%)

Query: 33  FLSYTGNAGFLGRLASWKVFLVCTRIS------------YTFYLTQFPL 69
           F  + G AG +  LA+   FL+   I+            Y +YL Q  L
Sbjct: 419 FRPHAGEAGDIDHLAA--AFLLAHNIAHGNNLRKSPGLQYLYYLAQIGL 465


>gnl|CDD|238644 cd01319, AMPD, AMP deaminase (AMPD) catalyzes the hydrolytic
           deamination of adensosine monophosphate (AMP) at
           position 6 of the adenine nucleotide ring. AMPD is a
           diverse and highly regulated eukaryotic key enzyme of
           the adenylate catabolic pathway.
          Length = 496

 Score = 25.0 bits (55), Expect = 6.9
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 14/44 (31%)

Query: 38  GNAGFLGRLASWKVFLVCTRIS------------YTFYLTQFPL 69
           G AG +  LAS   FL+   IS            Y +YLTQ  +
Sbjct: 334 GEAGDIDHLAS--AFLLAHGISHGINLRKVPVLQYLYYLTQIGI 375


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.333    0.143    0.490 

Gapped
Lambda     K      H
   0.267   0.0757    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,742,063
Number of extensions: 382658
Number of successful extensions: 589
Number of sequences better than 10.0: 1
Number of HSP's gapped: 587
Number of HSP's successfully gapped: 34
Length of query: 91
Length of database: 10,937,602
Length adjustment: 58
Effective length of query: 33
Effective length of database: 8,365,070
Effective search space: 276047310
Effective search space used: 276047310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 53 (24.1 bits)