RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10249
         (91 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.9 bits (64), Expect = 0.22
 Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 35/103 (33%)

Query: 15  NYAAFAPITWCLVFM-----WVIFLSYTG---------NAGFLGRLA------------S 48
           +Y    PI+  L+ +     +V+     G           G  G               S
Sbjct: 229 DYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS 288

Query: 49  WKVFLVCTRISYTFYLTQFPLFFYNVGTMRGAQQYSFGLLCAS 91
           W+ F V  R + T       LFF  +G  R  + Y    L  S
Sbjct: 289 WESFFVSVRKAITV------LFF--IGV-RCYEAYPNTSLPPS 322


>1n93_X P40 nucleoprotein; RNA virus nucleoprotein tetramer, viral
          protein; 1.76A {Borna disease virus} SCOP: a.206.1.1
          PDB: 1pp1_X*
          Length = 375

 Score = 25.7 bits (55), Expect = 2.8
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 11 LDAANYAAFAPITWCLVFMWVIF 33
          LD +    F  +T  LVF+ ++ 
Sbjct: 66 LDQSRRDMFHTVTPSLVFLCLLI 88


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.333    0.143    0.490 

Gapped
Lambda     K      H
   0.267   0.0541    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,417,747
Number of extensions: 67169
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 4
Length of query: 91
Length of database: 6,701,793
Length adjustment: 58
Effective length of query: 33
Effective length of database: 5,082,375
Effective search space: 167718375
Effective search space used: 167718375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 51 (23.9 bits)