RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10249
         (91 letters)



>d1n93x_ a.206.1.1 (X:) P40 nucleoprotein {Borna disease virus
          [TaxId: 12455]}
          Length = 343

 Score = 25.7 bits (56), Expect = 0.91
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 11 LDAANYAAFAPITWCLVFMWVIF 33
          LD +    F  +T  LVF+ ++ 
Sbjct: 34 LDQSRRDMFHTVTPSLVFLCLLI 56


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.333    0.143    0.490 

Gapped
Lambda     K      H
   0.267   0.0644    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 353,330
Number of extensions: 13510
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 3
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 47 (22.1 bits)