BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10250
(387 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KTN|A Chain A, Structural Genomics, Protein Ec1535
pdb|1KTN|B Chain B, Structural Genomics, Protein Ec1535
Length = 250
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 120/243 (49%), Gaps = 19/243 (7%)
Query: 131 IEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVI 190
++ +DLTTL+ DDT+ V L +A P+ +TAA+C+YP R + +
Sbjct: 12 LKLMDLTTLNDDDTDEKVIALCHQAKTPVG--------------NTAAICIYP-RFIPIA 56
Query: 191 KVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQ-RSLVLNNQ 249
+ +E ++++A+V FP G ++ L E DEVD+V R+L+ N+
Sbjct: 57 RKTLKEQGTPEIRIATVT-NFPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALMAGNE 115
Query: 250 WPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKT 309
+ + +K I+ GELK I AS ++ AG+DFIKTSTGK
Sbjct: 116 QVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKVAV 175
Query: 310 NATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLF 369
NAT + IM I+ K +G KPAGG+ T ED+ +++ + + G DW + +
Sbjct: 176 NATPESARIMMEVIRDMG--VEKTVGFKPAGGVRTAEDAQKYLAIADELFGADWADARHY 233
Query: 370 RIG 372
R G
Sbjct: 234 RFG 236
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 2 FPSGQYLLETRLHEIELLAKQKVDEVDIVIQ-RSLVLNNQWPELFSEVKQMKEKCEEKIH 60
FP G ++ L E DEVD+V R+L+ N+ + +
Sbjct: 76 FPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVL 135
Query: 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNAT 103
+K I+ GELK I AS ++ AG+DFIKTSTGK NAT
Sbjct: 136 LKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKVAVNAT 178
>pdb|1JCL|A Chain A, Observation Of Covalent Intermediates In An Enzyme
Mechanism At Atomic Resolution
pdb|1JCL|B Chain B, Observation Of Covalent Intermediates In An Enzyme
Mechanism At Atomic Resolution
pdb|1P1X|A Chain A, Comparison Of Class I Aldolase Binding Site Architecture
Based On The Crystal Structure Of
2-Deoxyribose-5-Phosphate Aldolase Determined At 0.99
Angstrom Resolution
pdb|1P1X|B Chain B, Comparison Of Class I Aldolase Binding Site Architecture
Based On The Crystal Structure Of
2-Deoxyribose-5-Phosphate Aldolase Determined At 0.99
Angstrom Resolution
Length = 260
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 120/243 (49%), Gaps = 19/243 (7%)
Query: 131 IEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVI 190
++ +DLTTL+ DDT+ V L +A P+ +TAA+C+YP R + +
Sbjct: 13 LKLMDLTTLNDDDTDEKVIALCHQAKTPVG--------------NTAAICIYP-RFIPIA 57
Query: 191 KVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQ-RSLVLNNQ 249
+ +E ++++A+V FP G ++ L E DEVD+V R+L+ N+
Sbjct: 58 RKTLKEQGTPEIRIATVT-NFPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALMAGNE 116
Query: 250 WPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKT 309
+ + +K I+ GELK I AS ++ AG+DFIKTSTGK
Sbjct: 117 QVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKVAV 176
Query: 310 NATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLF 369
NAT + IM I+ K +G KPAGG+ T ED+ +++ + + G DW + +
Sbjct: 177 NATPESARIMMEVIRDMG--VEKTVGFKPAGGVRTAEDAQKYLAIADELFGADWADARHY 234
Query: 370 RIG 372
R G
Sbjct: 235 RFG 237
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 2 FPSGQYLLETRLHEIELLAKQKVDEVDIVIQ-RSLVLNNQWPELFSEVKQMKEKCEEKIH 60
FP G ++ L E DEVD+V R+L+ N+ + +
Sbjct: 77 FPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVL 136
Query: 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNAT 103
+K I+ GELK I AS ++ AG+DFIKTSTGK NAT
Sbjct: 137 LKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKVAVNAT 179
>pdb|1JCJ|A Chain A, Observation Of Covalent Intermediates In An Enzyme
Mechanism At Atomic Resolution
pdb|1JCJ|B Chain B, Observation Of Covalent Intermediates In An Enzyme
Mechanism At Atomic Resolution
Length = 260
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 119/243 (48%), Gaps = 19/243 (7%)
Query: 131 IEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVI 190
++ +DLTTL+ DDT+ V L +A P+ +TAA+C+YP R + +
Sbjct: 13 LKLMDLTTLNDDDTDEKVIALCHQAKTPVG--------------NTAAICIYP-RFIPIA 57
Query: 191 KVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQ-RSLVLNNQ 249
+ +E ++++A+V FP G ++ L E DEVD+V R+L+ N+
Sbjct: 58 RKTLKEQGTPEIRIATVT-NFPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALMAGNE 116
Query: 250 WPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKT 309
+ + +K I+ GELK I AS ++ AG+DFIKTSTGK
Sbjct: 117 QVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKVAV 176
Query: 310 NATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLF 369
NAT + IM I+ K +G PAGG+ T ED+ +++ + + G DW + +
Sbjct: 177 NATPESARIMMEVIRDMG--VEKTVGFLPAGGVRTAEDAQKYLAIADELFGADWADARHY 234
Query: 370 RIG 372
R G
Sbjct: 235 RFG 237
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 2 FPSGQYLLETRLHEIELLAKQKVDEVDIVIQ-RSLVLNNQWPELFSEVKQMKEKCEEKIH 60
FP G ++ L E DEVD+V R+L+ N+ + +
Sbjct: 77 FPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVL 136
Query: 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNAT 103
+K I+ GELK I AS ++ AG+DFIKTSTGK NAT
Sbjct: 137 LKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKVAVNAT 179
>pdb|2A4A|A Chain A, Deoxyribose-Phosphate Aldolase From P. Yoelii
pdb|2A4A|B Chain B, Deoxyribose-Phosphate Aldolase From P. Yoelii
Length = 281
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 106/207 (51%), Gaps = 8/207 (3%)
Query: 177 AAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEV 236
AAVCVYP V + + + +E K+A V FP G +E L++ E DE+
Sbjct: 65 AAVCVYPKFVKFINEKIKQEINPFKPKIACVI-NFPYGTDSMEKVLNDTEKALDDGADEI 123
Query: 237 DIVIQRSLVLNNQWPELFSEVK---QMKEKCGEKIHMKTILAVGELKTSENIYCASMTAM 293
D+VI ++ N L K +K+ KI +K I+ VGELKT + I ++ +
Sbjct: 124 DLVINYKKIIENTDEGLKEATKLTQSVKKLLTNKI-LKVIIEVGELKTEDLIIKTTLAVL 182
Query: 294 FAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLS---GKKIGLKPAGGISTFEDSVR 350
+DFIKTSTGK + NAT + + AIK + K + KIGLK +GGIS +
Sbjct: 183 NGNADFIKTSTGKVQINATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASH 242
Query: 351 WIYLVLIMLGPDWLNKDLFRIGASSLL 377
+I L L + D FRIG+SSL+
Sbjct: 243 YILLARRFLSSLACHPDNFRIGSSSLV 269
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVK---QMKEKCEE 57
FP G +E L++ E DE+D+VI ++ N L K +K+
Sbjct: 97 NFPYGTDSMEKVLNDTEKALDDGADEIDLVINYKKIIENTDEGLKEATKLTQSVKKLLTN 156
Query: 58 KIHMKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNAT 103
KI +K I+ VGELKT + I ++ + +DFIKTSTGK + NAT
Sbjct: 157 KI-LKVIIEVGELKTEDLIIKTTLAVLNGNADFIKTSTGKVQINAT 201
>pdb|3R12|A Chain A, Crystal Structure Of A Deoxyribose-Phosphate Aldolase
(Tm_1559) From Thermotoga Maritima At 1.75 A Resolution
pdb|3R12|B Chain B, Crystal Structure Of A Deoxyribose-Phosphate Aldolase
(Tm_1559) From Thermotoga Maritima At 1.75 A Resolution
pdb|3R13|A Chain A, Crystal Structure Of A Deoxyribose-Phosphate Aldolase
(Tm_1559) From Thermotoga Maritima At 1.83 A Resolution
pdb|3R13|B Chain B, Crystal Structure Of A Deoxyribose-Phosphate Aldolase
(Tm_1559) From Thermotoga Maritima At 1.83 A Resolution
Length = 260
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 107/241 (44%), Gaps = 42/241 (17%)
Query: 142 DDTEAVVETLTLKA------IQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDR 195
+D ++ +E LK I+ L E +E H VCV P V K+
Sbjct: 41 EDVKSAIEHTNLKPFATPDDIKKLCLEARENRFH--------GVCVNPCYV----KLARE 88
Query: 196 ENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFS 255
E DVKV +V GFP G T+ HE + DE+D VI + +W ++
Sbjct: 89 ELEGTDVKVVTVV-GFPLGANETRTKAHEAIFAVESGADEIDXVINVGXLKAKEWEYVYE 147
Query: 256 EVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPA 315
+++ + E K+ +K I+ L T E I A + + AG+ F+KTSTG AT
Sbjct: 148 DIRSVVESVKGKV-VKVIIETCYLDTEEKI-AACVISKLAGAHFVKTSTGFGTGGAT--- 202
Query: 316 GIIMCSAIKHFHK-LSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 374
+ H K + G + G+K +GGI TFED+V+ I G D RIG S
Sbjct: 203 -----AEDVHLXKWIVGDEXGVKASGGIRTFEDAVK-----XIXYGAD-------RIGTS 245
Query: 375 S 375
S
Sbjct: 246 S 246
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIH 60
GFP G T+ HE + DE+D VI + +W ++ +++ + E + K+
Sbjct: 102 GFPLGANETRTKAHEAIFAVESGADEIDXVINVGXLKAKEWEYVYEDIRSVVESVKGKV- 160
Query: 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNAT 103
+K I+ L T E I A + + AG+ F+KTSTG AT
Sbjct: 161 VKVIIETCYLDTEEKI-AACVISKLAGAHFVKTSTGFGTGGAT 202
>pdb|3NPX|A Chain A, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution
pdb|3NPX|B Chain B, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution
Length = 264
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 106/243 (43%), Gaps = 19/243 (7%)
Query: 131 IEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVI 190
++ + L T +GDDT+ V L +A P+ T A+ +YP R + +
Sbjct: 13 LKLMHLATANGDDTDEKVIALCHQAKTPVGT--------------TDAIFIYP-RFIPIA 57
Query: 191 KVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQ-RSLVLNNQ 249
+ +E ++++ + + FP G ++ L E D V +V R+L+ N+
Sbjct: 58 RKTLKEQGTPEIRIWT-STNFPHGNDDIDIALAETRAAIAYGADGVAVVFPYRALMAGNE 116
Query: 250 WPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKT 309
+ + + I+ GELK I AS ++ AG+D I TSTGK
Sbjct: 117 QVGFDLVKACKEACAAANVLLSVIIETGELKDEALIRKASEISIKAGADHIVTSTGKVAV 176
Query: 310 NATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLF 369
AT + IM I+ K +G PAGG+ T E++ +++ + + G DW + +
Sbjct: 177 GATPESARIMMEVIRDMGVE--KTVGFIPAGGVRTAEEAQKYLAIADELFGADWADARHY 234
Query: 370 RIG 372
G
Sbjct: 235 AFG 237
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Query: 2 FPSGQYLLETRLHEIELLAKQKVDEVDIVIQ-RSLVLNNQWPELFSEVKQMKEKCEEKIH 60
FP G ++ L E D V +V R+L+ N+ + +
Sbjct: 77 FPHGNDDIDIALAETRAAIAYGADGVAVVFPYRALMAGNEQVGFDLVKACKEACAAANVL 136
Query: 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNAT 103
+ I+ GELK I AS ++ AG+D I TSTGK AT
Sbjct: 137 LSVIIETGELKDEALIRKASEISIKAGADHIVTSTGKVAVGAT 179
>pdb|3NGJ|A Chain A, Crystal Structure Of A Putative Deoxyribose-Phosphate
Aldolase From Entamoeba Histolytica
pdb|3NGJ|B Chain B, Crystal Structure Of A Putative Deoxyribose-Phosphate
Aldolase From Entamoeba Histolytica
pdb|3NGJ|C Chain C, Crystal Structure Of A Putative Deoxyribose-Phosphate
Aldolase From Entamoeba Histolytica
pdb|3NGJ|D Chain D, Crystal Structure Of A Putative Deoxyribose-Phosphate
Aldolase From Entamoeba Histolytica
Length = 239
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 117/255 (45%), Gaps = 47/255 (18%)
Query: 130 IIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDV 189
+ ++ID T L D TE E+++ K+ + A A+VCV P V
Sbjct: 27 LAKYIDHTLLKADATE---------------EQIR-KLCSEAAEYKFASVCVNPTWVPLC 70
Query: 190 IKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQ 249
++L VKV +V GFP G E + +E ++ +Q +EVD+VI +V +
Sbjct: 71 AELLKGTG----VKVCTVI-GFPLGATPSEVKAYETKVAVEQGAEEVDMVINIGMVKAKK 125
Query: 250 WPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENI-YCASMTAMFAGSDFIKTSTGKEK 308
+ ++ +VK + + G+ + K I+ L E + C A AG++++KTSTG
Sbjct: 126 YDDVEKDVKAVVDASGKAL-TKVIIECCYLTNEEKVEVCKRCVA--AGAEYVKTSTGFGT 182
Query: 309 TNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDL 368
AT P +K G K +K AGGI TF+D+++ I N
Sbjct: 183 HGAT-P------EDVKLMKDTVGDKALVKAAGGIRTFDDAMKMI------------NNGA 223
Query: 369 FRIGAS---SLLNNI 380
RIGAS ++LN I
Sbjct: 224 SRIGASAGIAILNGI 238
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIH 60
GFP G E + +E ++ +Q +EVD+VI +V ++ ++ +VK + + K
Sbjct: 86 GFPLGATPSEVKAYETKVAVEQGAEEVDMVINIGMVKAKKYDDVEKDVKAVVDA-SGKAL 144
Query: 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPADL 108
K I+ L E + + AG++++KTSTG AT P D+
Sbjct: 145 TKVIIECCYLTNEEKVEVCKR-CVAAGAEYVKTSTGFGTHGAT-PEDV 190
>pdb|3NQ8|A Chain A, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution R4 85A
Length = 269
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 104/240 (43%), Gaps = 19/240 (7%)
Query: 137 TTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRE 196
T+ + DDT+ V L +A P+ T A+ +YP R + + + +E
Sbjct: 20 TSANDDDTDENVIALCHQAKTPVGT--------------TDAIFIYP-RFIPIARKTLKE 64
Query: 197 NARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQ-RSLVLNNQWPELFS 255
++++ + + FP G ++ L E D V +V R+L+ N+
Sbjct: 65 QGTPEIRICT-STNFPHGNDDIDIALAETRAAIAYGADGVAVVFPYRALMAGNEQVGFDL 123
Query: 256 EVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPA 315
+ + + I+ GELK I AS ++ AG+D+I TSTGK AT +
Sbjct: 124 VKACKEACAAANVLLSVIIETGELKDEALIRKASEISIKAGADYIVTSTGKVAVGATPES 183
Query: 316 GIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS 375
IM I+ + +G P GG+ T ED+ +++ + + G DW + + GAS
Sbjct: 184 ARIMMEVIRDMGVEN--TVGFIPVGGVRTAEDAQKYLAIADELFGADWADARHYAFGASG 241
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Query: 2 FPSGQYLLETRLHEIELLAKQKVDEVDIVIQ-RSLVLNNQWPELFSEVKQMKEKCEEKIH 60
FP G ++ L E D V +V R+L+ N+ + +
Sbjct: 78 FPHGNDDIDIALAETRAAIAYGADGVAVVFPYRALMAGNEQVGFDLVKACKEACAAANVL 137
Query: 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNAT 103
+ I+ GELK I AS ++ AG+D+I TSTGK AT
Sbjct: 138 LSVIIETGELKDEALIRKASEISIKAGADYIVTSTGKVAVGAT 180
>pdb|3NPU|A Chain A, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution
pdb|3NPU|B Chain B, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution
pdb|3NPV|B Chain B, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution
pdb|3NPV|A Chain A, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution
Length = 263
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 105/243 (43%), Gaps = 19/243 (7%)
Query: 131 IEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVI 190
++ + L T + DDT+ V L +A P+ T A+ +YP R + +
Sbjct: 12 LKLMHLATANDDDTDEKVIALCHQAKTPVGT--------------TDAIYIYP-RFIPIA 56
Query: 191 KVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQ-RSLVLNNQ 249
+ +E ++++ + + FP G ++ L E D V +V R+L+ N+
Sbjct: 57 RKTLKEQGTPEIRIWT-STNFPHGNDDIDIALAETRAAIAYGADGVAVVFPYRALMAGNE 115
Query: 250 WPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKT 309
+ + + I+ GELK I AS ++ AG+D I TSTGK
Sbjct: 116 QVGFDLVKACKEACAAANVLLSVIIETGELKDEALIRKASEISIKAGADHIVTSTGKVAV 175
Query: 310 NATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLF 369
AT + IM I+ K +G PAGG+ T ED+ +++ + + G DW + +
Sbjct: 176 GATPESARIMMEVIRDMGVE--KTVGFIPAGGVRTAEDAQKYLAIADELFGADWADARHY 233
Query: 370 RIG 372
G
Sbjct: 234 AFG 236
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Query: 2 FPSGQYLLETRLHEIELLAKQKVDEVDIVIQ-RSLVLNNQWPELFSEVKQMKEKCEEKIH 60
FP G ++ L E D V +V R+L+ N+ + +
Sbjct: 76 FPHGNDDIDIALAETRAAIAYGADGVAVVFPYRALMAGNEQVGFDLVKACKEACAAANVL 135
Query: 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNAT 103
+ I+ GELK I AS ++ AG+D I TSTGK AT
Sbjct: 136 LSVIIETGELKDEALIRKASEISIKAGADHIVTSTGKVAVGAT 178
>pdb|3NPW|A Chain A, In Silico Designed Of An Improved Kemp Eliminase Ke70
Mutant By Computational Design And Directed Evolution
pdb|3NPW|B Chain B, In Silico Designed Of An Improved Kemp Eliminase Ke70
Mutant By Computational Design And Directed Evolution
Length = 264
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 105/243 (43%), Gaps = 19/243 (7%)
Query: 131 IEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVI 190
++ + L T + DDT+ V L +A P+ T A+ +YP R + +
Sbjct: 13 LKLMHLATANDDDTDEKVIALCHQAKTPVGT--------------TDAIFIYP-RFIPIA 57
Query: 191 KVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQ-RSLVLNNQ 249
+ +E ++++ + + FP G ++ L E D V +V R+L+ N+
Sbjct: 58 RKTLKEQGTPEIRIWT-STNFPHGNDDIDIALAETRAAIAYGADGVAVVFPYRALMAGNE 116
Query: 250 WPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKT 309
+ + + I+ GELK I AS ++ AG+D I TSTGK
Sbjct: 117 QVGFDLVKACKEACAAANVLLSVIIETGELKDEALIRKASEISIKAGADHIVTSTGKVAV 176
Query: 310 NATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLF 369
AT + IM I+ K +G PAGG+ T E++ +++ + + G DW + +
Sbjct: 177 GATPESARIMMEVIRDMGVE--KTVGFIPAGGVRTAEEAQKYLAIADELFGADWADARHY 234
Query: 370 RIG 372
G
Sbjct: 235 AFG 237
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Query: 2 FPSGQYLLETRLHEIELLAKQKVDEVDIVIQ-RSLVLNNQWPELFSEVKQMKEKCEEKIH 60
FP G ++ L E D V +V R+L+ N+ + +
Sbjct: 77 FPHGNDDIDIALAETRAAIAYGADGVAVVFPYRALMAGNEQVGFDLVKACKEACAAANVL 136
Query: 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNAT 103
+ I+ GELK I AS ++ AG+D I TSTGK AT
Sbjct: 137 LSVIIETGELKDEALIRKASEISIKAGADHIVTSTGKVAVGAT 179
>pdb|3Q2D|A Chain A, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution
pdb|3Q2D|B Chain B, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution
Length = 272
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 102/237 (43%), Gaps = 19/237 (8%)
Query: 137 TTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRE 196
T+ + DDT+ V L +A P+ +T A+ +YP R + + + +E
Sbjct: 20 TSANDDDTDENVIALCHQAKTPVG--------------NTDAIFIYP-RFIPIARKTLKE 64
Query: 197 NARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQ-RSLVLNNQWPELFS 255
++++ + + FP G ++ L E D V +V R+L+ N+
Sbjct: 65 QGTPEIRICT-STNFPHGNDDIDIALAETRAAIAYGADSVAVVFPYRALMAGNEQVGFDL 123
Query: 256 EVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPA 315
+ + + I+ GELK I AS ++ AG+D I TSTGK AT +
Sbjct: 124 VKACKEACAAANVLLAVIIETGELKDEALIRKASEISIKAGADNIVTSTGKVAVGATPES 183
Query: 316 GIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIG 372
IM I+ K +G P GG+ T ED+ +++ + + G DW + + G
Sbjct: 184 ARIMMEVIRDMGVE--KTVGFIPVGGVRTAEDAQKYLAIADELFGADWADARHYAFG 238
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Query: 2 FPSGQYLLETRLHEIELLAKQKVDEVDIVIQ-RSLVLNNQWPELFSEVKQMKEKCEEKIH 60
FP G ++ L E D V +V R+L+ N+ + +
Sbjct: 78 FPHGNDDIDIALAETRAAIAYGADSVAVVFPYRALMAGNEQVGFDLVKACKEACAAANVL 137
Query: 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNAT 103
+ I+ GELK I AS ++ AG+D I TSTGK AT
Sbjct: 138 LAVIIETGELKDEALIRKASEISIKAGADNIVTSTGKVAVGAT 180
>pdb|3NR0|A Chain A, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution R6 610A
pdb|3NR0|B Chain B, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution R6 610A
Length = 271
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 102/237 (43%), Gaps = 19/237 (8%)
Query: 137 TTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRE 196
T+ + DDT+ V L +A P+ +T A+ +YP R + + + +E
Sbjct: 19 TSANDDDTDENVIALCHQAKTPVG--------------NTDAIFIYP-RFIPIARKTLKE 63
Query: 197 NARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQ-RSLVLNNQWPELFS 255
++++ + + FP G ++ L E D V +V R+L+ N+
Sbjct: 64 QGTPEIRICT-STNFPHGNDDIDIALAETRAAIAYGADSVAVVFPYRALMAGNEQVGFDL 122
Query: 256 EVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPA 315
+ + + I+ GELK I AS ++ AG+D I TSTGK AT +
Sbjct: 123 VKACKEACAAANVLLAVIIETGELKDEALIRKASEISIKAGADNIVTSTGKVAVGATPES 182
Query: 316 GIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIG 372
IM I+ K +G P GG+ T ED+ +++ + + G DW + + G
Sbjct: 183 ARIMMEVIRDMGVE--KTVGFIPVGGVRTAEDAQKYLAIADELFGADWADARHYAFG 237
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Query: 2 FPSGQYLLETRLHEIELLAKQKVDEVDIVIQ-RSLVLNNQWPELFSEVKQMKEKCEEKIH 60
FP G ++ L E D V +V R+L+ N+ + +
Sbjct: 77 FPHGNDDIDIALAETRAAIAYGADSVAVVFPYRALMAGNEQVGFDLVKACKEACAAANVL 136
Query: 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNAT 103
+ I+ GELK I AS ++ AG+D I TSTGK AT
Sbjct: 137 LAVIIETGELKDEALIRKASEISIKAGADNIVTSTGKVAVGAT 179
>pdb|3NQ2|A Chain A, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution R2 35G
pdb|3NQ2|B Chain B, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution R2 35G
Length = 264
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 19/243 (7%)
Query: 131 IEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVI 190
++ + L T + DDT+ V L +A P+ T A+ +YP R + +
Sbjct: 13 LKLMHLATANDDDTDEKVIALCHQAKTPVGT--------------TDAIFIYP-RFIPIA 57
Query: 191 KVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQ-RSLVLNNQ 249
+ +E ++++ + + FP G ++ L E D V +V R+L+ N+
Sbjct: 58 RKTLKEQGTPEIRIWT-STNFPHGNDDIDIALAETRAAIAYGADGVAVVFPYRALMAGNE 116
Query: 250 WPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKT 309
+ + + I+ GELK I AS ++ AG+D I TSTGK
Sbjct: 117 QVGFDLVKACKEACAAANVLLSVIIETGELKDEALIRKASEISIKAGADHIVTSTGKVAE 176
Query: 310 NATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLF 369
AT + IM I+ K +G P GG+ T ED+ +++ + + G DW + +
Sbjct: 177 GATPESARIMMEVIRDMGVE--KTVGFIPVGGVRTAEDAQKYLAIADELFGADWADARHY 234
Query: 370 RIG 372
G
Sbjct: 235 AFG 237
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Query: 2 FPSGQYLLETRLHEIELLAKQKVDEVDIVIQ-RSLVLNNQWPELFSEVKQMKEKCEEKIH 60
FP G ++ L E D V +V R+L+ N+ + +
Sbjct: 77 FPHGNDDIDIALAETRAAIAYGADGVAVVFPYRALMAGNEQVGFDLVKACKEACAAANVL 136
Query: 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNAT 103
+ I+ GELK I AS ++ AG+D I TSTGK AT
Sbjct: 137 LSVIIETGELKDEALIRKASEISIKAGADHIVTSTGKVAEGAT 179
>pdb|3NQV|A Chain A, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution R5 74A
Length = 272
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 105/244 (43%), Gaps = 20/244 (8%)
Query: 131 IEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVI 190
++ + L T + DDT+ V L +A P+ +T A+ +YP R + +
Sbjct: 13 LKLMHLATANDDDTDENVIALCHQAKTPVG--------------NTDAIFIYP-RFIPIA 57
Query: 191 KVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQ-RSLVLNNQ 249
+ +E ++++ + + FP G ++ L E D V +V R+L+ N+
Sbjct: 58 RKTLKEQGTPEIRICT-STNFPHGNDDIDIALAETRAAIAYGADSVAVVFPYRALMAGNE 116
Query: 250 WPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTST-GKEK 308
+ + + I+ GELK I AS ++ AG+D I TST GK
Sbjct: 117 QVGFDLVKACKEACAAANVLLAVIIETGELKDEALIRKASEISIKAGADNIVTSTPGKVA 176
Query: 309 TNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDL 368
AT + IM I+ K +G P GG+ T ED+ +++ + + G DW +
Sbjct: 177 EGATPESARIMMEVIRDMGVE--KTVGFIPVGGVRTAEDAQKYLAIADELFGADWADSRH 234
Query: 369 FRIG 372
+ G
Sbjct: 235 YAFG 238
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
Query: 2 FPSGQYLLETRLHEIELLAKQKVDEVDIVIQ-RSLVLNNQWPELFSEVKQMKEKCEEKIH 60
FP G ++ L E D V +V R+L+ N+ + +
Sbjct: 77 FPHGNDDIDIALAETRAAIAYGADSVAVVFPYRALMAGNEQVGFDLVKACKEACAAANVL 136
Query: 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTST-GKEKTNAT 103
+ I+ GELK I AS ++ AG+D I TST GK AT
Sbjct: 137 LAVIIETGELKDEALIRKASEISIKAGADNIVTSTPGKVAEGAT 180
>pdb|3NG3|A Chain A, Crystal Structure Of Deoxyribose Phosphate Aldolase From
Mycobacterium Avium 104 In A Schiff Base With An Unknown
Aldehyde
pdb|3NG3|B Chain B, Crystal Structure Of Deoxyribose Phosphate Aldolase From
Mycobacterium Avium 104 In A Schiff Base With An Unknown
Aldehyde
pdb|3NG3|C Chain C, Crystal Structure Of Deoxyribose Phosphate Aldolase From
Mycobacterium Avium 104 In A Schiff Base With An Unknown
Aldehyde
pdb|3NG3|D Chain D, Crystal Structure Of Deoxyribose Phosphate Aldolase From
Mycobacterium Avium 104 In A Schiff Base With An Unknown
Aldehyde
Length = 227
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 17/170 (10%)
Query: 178 AVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVD 237
AVCV P V ++ A V+VASVA GFPSG+++ + HE L E+D
Sbjct: 44 AVCVSPPMVPAAVQ------AGAGVRVASVA-GFPSGKHVSAVKAHEAALAVASGAAEID 96
Query: 238 IVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTIL---AVGELKTSENIYCASMTAMF 294
+VI L + +++ ++ G + +K I+ A+ L + A
Sbjct: 97 MVIDVGAALAGDLDGVRADIAAVRGAVGGAV-LKVIVESSALLALADEHTLVRVCRAAED 155
Query: 295 AGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGIST 344
AG+DF+KTSTG P+G A+ + G ++G+K +GGI T
Sbjct: 156 AGADFVKTSTGFH------PSGGASVRAVALMAEAVGGRLGVKASGGIRT 199
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIH 60
GFPSG+++ + HE L E+D+VI L + +++ ++ +
Sbjct: 69 GFPSGKHVSAVKAHEAALAVASGAAEIDMVIDVGAALAGDLDGVRADIAAVRGAVGGAV- 127
Query: 61 MKTIL---AVGELKTSENIYYASMTAMFAGSDFIKTSTG 96
+K I+ A+ L + A AG+DF+KTSTG
Sbjct: 128 LKVIVESSALLALADEHTLVRVCRAAEDAGADFVKTSTG 166
>pdb|3OA3|A Chain A, Crystal Structure Of A Putative Deoxyribose-Phosphate
Aldolase From Coccidioides Immitis
pdb|3OA3|B Chain B, Crystal Structure Of A Putative Deoxyribose-Phosphate
Aldolase From Coccidioides Immitis
Length = 288
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 11/176 (6%)
Query: 177 AAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEV 236
A VCV P V ++ L V V V GF G Y + ++ E + + E+
Sbjct: 89 ATVCVRPDYVSRAVQYLQGTQ----VGVTCVI-GFHEGTYSTDQKVSEAKRAMQNGASEL 143
Query: 237 DIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAG 296
D+V+ + ++ ++F +++ ++ + I +K IL +L T++ I + + AG
Sbjct: 144 DMVMNYPWLSEKRYTDVFQDIRAVRLAAKDAI-LKVILETSQL-TADEIIAGCVLSSLAG 201
Query: 297 SDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWI 352
+D++KTSTG A+I +M + + +K +GGI T ED V+ +
Sbjct: 202 ADYVKTSTGFNGPGASIENVSLMSAVCDSLQ----SETRVKASGGIRTIEDCVKMV 253
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 56/104 (53%), Gaps = 2/104 (1%)
Query: 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIH 60
GF G Y + ++ E + + E+D+V+ + ++ ++F +++ ++ ++ I
Sbjct: 117 GFHEGTYSTDQKVSEAKRAMQNGASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAKDAI- 175
Query: 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATI 104
+K IL +L T++ I + + AG+D++KTSTG A+I
Sbjct: 176 LKVILETSQL-TADEIIAGCVLSSLAGADYVKTSTGFNGPGASI 218
>pdb|3NDO|A Chain A, Crystal Structure Of Deoxyribose Phosphate Aldolase From
Mycobacterium Smegmatis
pdb|3NDO|B Chain B, Crystal Structure Of Deoxyribose Phosphate Aldolase From
Mycobacterium Smegmatis
Length = 231
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 16/197 (8%)
Query: 167 VLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIE 226
++ + A++ AVCV P V V A + +A+VA GFPSG+++ + E E
Sbjct: 34 LVDEAADLGVFAVCVSPPLVSVAAGV-----APSGLAIAAVA-GFPSGKHVPGIKATEAE 87
Query: 227 LLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTIL---AVGELKTSE 283
L E+D+VI L + +++ ++ K +K I+ A+ E
Sbjct: 88 LAVAAGATEIDMVIDVGAALAGDLDAVSADITAVR-KAVRAATLKVIVESAALLEFSGEP 146
Query: 284 NIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGIS 343
+ A AG+DF+KTSTG P+G A++ + G+++G+K +GGI
Sbjct: 147 LLADVCRVARDAGADFVKTSTGFH------PSGGASVQAVEIMARTVGERLGVKASGGIR 200
Query: 344 TFEDSVRWIYLVLIMLG 360
T E + + LG
Sbjct: 201 TAEQAAAMLDAGATRLG 217
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIH 60
GFPSG+++ + E EL E+D+VI L + +++ ++ K
Sbjct: 71 GFPSGKHVPGIKATEAELAVAAGATEIDMVIDVGAALAGDLDAVSADITAVR-KAVRAAT 129
Query: 61 MKTIL---AVGELKTSENIYYASMTAMFAGSDFIKTSTG 96
+K I+ A+ E + A AG+DF+KTSTG
Sbjct: 130 LKVIVESAALLEFSGEPLLADVCRVARDAGADFVKTSTG 168
>pdb|1VCV|A Chain A, Structure Of 2-Deoxyribose-5-Phosphate Aldolase From
Pyrobaculum Aerophilum
pdb|1VCV|B Chain B, Structure Of 2-Deoxyribose-5-Phosphate Aldolase From
Pyrobaculum Aerophilum
Length = 226
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 22/187 (11%)
Query: 177 AAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEV 236
AA CV P V++ L R+ VK+ V A FP G +R+ + LA + DE+
Sbjct: 32 AAYCVNPI-YAPVVRPLLRK-----VKL-CVVADFPFGALPTASRIALVSRLA-EVADEI 83
Query: 237 DIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAG 296
D+V LV + +W E+ ++ + G ++ +K I L+ E + A AG
Sbjct: 84 DVVAPIGLVKSRRWAEVRRDLISVVGAAGGRV-VKVITEEPYLRDEERYTLYDIIAE-AG 141
Query: 297 SDFIKTSTG-KEKTNATIPAGII-----MCSAIKHFHKLSGKKIGLKPAGGISTFE---- 346
+ FIK+STG E+ A + +AI + K G ++G+K AGGI T E
Sbjct: 142 AHFIKSSTGFAEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKA 201
Query: 347 --DSVRW 351
D++ W
Sbjct: 202 IVDAIGW 208
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 2 FPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHM 61
FP G +R+ + LA + DE+D+V LV + +W E+ ++ + ++ +
Sbjct: 59 FPFGALPTASRIALVSRLA-EVADEIDVVAPIGLVKSRRWAEVRRDLISVVGAAGGRV-V 116
Query: 62 KTILAVGELKTSENIYYASMTAMFAGSDFIKTSTG 96
K I L+ E + A AG+ FIK+STG
Sbjct: 117 KVITEEPYLRDEERYTLYDIIAE-AGAHFIKSSTG 150
>pdb|4EIV|A Chain A, 1.37 Angstrom Resolution Crystal Structure Of Apo-Form Of
A Putative Deoxyribose-Phosphate Aldolase From
Toxoplasma Gondii Me49
pdb|4EIV|B Chain B, 1.37 Angstrom Resolution Crystal Structure Of Apo-Form Of
A Putative Deoxyribose-Phosphate Aldolase From
Toxoplasma Gondii Me49
Length = 297
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 115/248 (46%), Gaps = 41/248 (16%)
Query: 171 QANVHTAAVCVYPAR---VVDV------IKVLDRENARDDVKVASV----AAGFPSGQYL 217
+ N AAVC A+ +V V ++ + +E + +VA + A FP G
Sbjct: 39 ETNESVAAVCKIAAKDPAIVGVSVRPAFVRFIRQELVKSAPEVAGIKVCAAVNFPEGTGT 98
Query: 218 LETRLHEIELLAKQKVDEVDIVIQ-RSLVLNNQWPE-----LFSEVKQMKEKCGEKIHMK 271
+T E K DE++ +I R + N E L SEVK++ G K +K
Sbjct: 99 PDTVSLEAVGALKDGADEIECLIDWRRMNENVADGESRIRLLVSEVKKV---VGPKT-LK 154
Query: 272 TILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFH---- 327
+L+ GEL+ + I A++ A+ G+DF++TS+G T+AT+ ++ A++ +
Sbjct: 155 VVLSGGELQGGDIISRAAVAALEGGADFLQTSSGLGATHATMFTVHLISIALREYMVREN 214
Query: 328 ---KLSG--------KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL 376
++ G + IG+K G ++ ++ ++ GP + +D FR+G
Sbjct: 215 ERIRVEGINREGAAVRCIGIKIEVGDVHMAETADFLMQMIFENGPRSIVRDKFRVGGGF- 273
Query: 377 LNNILQEL 384
N+L+EL
Sbjct: 274 --NLLKEL 279
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 2 FPSGQYLLETRLHEIELLAKQKVDEVDIVIQ-RSLVLNNQWPE-----LFSEVKQMKEKC 55
FP G +T E K DE++ +I R + N E L SEVK K
Sbjct: 92 FPEGTGTPDTVSLEAVGALKDGADEIECLIDWRRMNENVADGESRIRLLVSEVK----KV 147
Query: 56 EEKIHMKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATI 104
+K +L+ GEL+ + I A++ A+ G+DF++TS+G T+AT+
Sbjct: 148 VGPKTLKVVLSGGELQGGDIISRAAVAALEGGADFLQTSSGLGATHATM 196
>pdb|3QYQ|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of A Putative
Deoxyribose- Phosphate Aldolase From Toxoplasma Gondii
Me49
pdb|3QYQ|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of A Putative
Deoxyribose- Phosphate Aldolase From Toxoplasma Gondii
Me49
pdb|3QYQ|C Chain C, 1.8 Angstrom Resolution Crystal Structure Of A Putative
Deoxyribose- Phosphate Aldolase From Toxoplasma Gondii
Me49
pdb|3QYQ|D Chain D, 1.8 Angstrom Resolution Crystal Structure Of A Putative
Deoxyribose- Phosphate Aldolase From Toxoplasma Gondii
Me49
Length = 293
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 115/248 (46%), Gaps = 41/248 (16%)
Query: 171 QANVHTAAVCVYPAR---VVDV------IKVLDRENARDDVKVASV----AAGFPSGQYL 217
+ N AAVC A+ +V V ++ + +E + +VA + A FP G
Sbjct: 40 ETNESVAAVCKIAAKDPAIVGVSVRPAFVRFIRQELVKSAPEVAGIKVCAAVNFPEGTGT 99
Query: 218 LETRLHEIELLAKQKVDEVDIVIQ-RSLVLNNQWPE-----LFSEVKQMKEKCGEKIHMK 271
+T E K DE++ +I R + N E L SEVK++ G K +K
Sbjct: 100 PDTVSLEAVGALKDGADEIECLIDWRRMNENVADGESRIRLLVSEVKKV---VGPKT-LK 155
Query: 272 TILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFH---- 327
+L+ GEL+ + I A++ A+ G+DF++TS+G T+AT+ ++ A++ +
Sbjct: 156 VVLSGGELQGGDIISRAAVAALEGGADFLQTSSGLGATHATMFTVHLISIALREYMVREN 215
Query: 328 ---KLSG--------KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL 376
++ G + IG+K G ++ ++ ++ GP + +D FR+G
Sbjct: 216 ERIRVEGINREGAAVRCIGIKIEVGDVHMAETADFLMQMIFENGPRSIVRDKFRVGGGF- 274
Query: 377 LNNILQEL 384
N+L+EL
Sbjct: 275 --NLLKEL 280
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 2 FPSGQYLLETRLHEIELLAKQKVDEVDIVIQ-RSLVLNNQWPE-----LFSEVKQMKEKC 55
FP G +T E K DE++ +I R + N E L SEVK K
Sbjct: 93 FPEGTGTPDTVSLEAVGALKDGADEIECLIDWRRMNENVADGESRIRLLVSEVK----KV 148
Query: 56 EEKIHMKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATI 104
+K +L+ GEL+ + I A++ A+ G+DF++TS+G T+AT+
Sbjct: 149 VGPKTLKVVLSGGELQGGDIISRAAVAALEGGADFLQTSSGLGATHATM 197
>pdb|1J2W|A Chain A, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|B Chain B, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|C Chain C, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|D Chain D, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1UB3|A Chain A, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|B Chain B, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|C Chain C, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|D Chain D, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
Length = 220
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 210 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIH 269
GFP G E + E L + DEVD+V+ L +EV+ ++E + +
Sbjct: 62 GFPLGYQEKEVKALEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAV- 120
Query: 270 MKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKL 329
+K IL G + E I + A+ G+DF+KTSTG A++ + ++
Sbjct: 121 LKVILETGYF-SPEEIARLAEAAIRGGADFLKTSTGFGPRGASL-------EDVALLVRV 172
Query: 330 SGKKIGLKPAGGISTFEDSVRWI 352
+ + +K AGGI E ++R +
Sbjct: 173 AQGRAQVKAAGGIRDRETALRML 195
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIH 60
GFP G E + E L + DEVD+V+ L +EV+ ++E + +
Sbjct: 62 GFPLGYQEKEVKALEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAV- 120
Query: 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATI 104
+K IL G + E I + A+ G+DF+KTSTG A++
Sbjct: 121 LKVILETGYF-SPEEIARLAEAAIRGGADFLKTSTGFGPRGASL 163
>pdb|1MZH|A Chain A, Qr15, An Aldolase
pdb|1MZH|B Chain B, Qr15, An Aldolase
Length = 225
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 97/222 (43%), Gaps = 29/222 (13%)
Query: 155 AIQP-LSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPS 213
A++P LSE+ E+ + + + AVCV P V + + VKV V GFP
Sbjct: 12 ALKPHLSEKEIEEFVLKSEELGIYAVCVNPYHVKLASSIAKK------VKVCCVI-GFPL 64
Query: 214 GQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTI 273
G ++ E + E+DIV S + ++ + E+K++ + +H K I
Sbjct: 65 GLNKTSVKVKEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVH-KVI 123
Query: 274 LAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKK 333
+ L E I A + AG+DFIKTSTG T+ ++ S+ K +
Sbjct: 124 VETPYL-NEEEIKKAVEICIEAGADFIKTSTGFAPRGTTLEEVRLIKSSAK-------GR 175
Query: 334 IGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS 375
I +K +GGI E ++ +I G D RIG SS
Sbjct: 176 IKVKASGGIRDLETAIS-----MIEAGAD-------RIGTSS 205
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIH 60
GFP G ++ E + E+DIV S + ++ + E+K++ + +H
Sbjct: 61 GFPLGLNKTSVKVKEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVH 120
Query: 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTG 96
K I+ L E I A + AG+DFIKTSTG
Sbjct: 121 -KVIVETPYL-NEEEIKKAVEICIEAGADFIKTSTG 154
>pdb|1N7K|A Chain A, Unique Tetrameric Structure Of Deoxyribose Phosphate
Aldolase From Aeropyrum Pernix
pdb|1N7K|B Chain B, Unique Tetrameric Structure Of Deoxyribose Phosphate
Aldolase From Aeropyrum Pernix
Length = 234
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 11/148 (7%)
Query: 202 VKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMK 261
VK+ SV GFP GQ LE +L E + + + E+D+V SL + E+ VK K
Sbjct: 72 VKLCSVI-GFPLGQAPLEVKLVEAQTVLEAGATELDVVPHLSLGPEAVYREVSGIVKLAK 130
Query: 262 EKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCS 321
+K IL L + + ++ AG+D +KTSTG T P + +
Sbjct: 131 SYGA---VVKVILEA-PLWDDKTLSLLVDSSRRAGADIVKTSTGV-YTKGGDPVTVFRLA 185
Query: 322 AIKHFHKLSGKKIGLKPAGGISTFEDSV 349
++ + G+K +GGI + D+V
Sbjct: 186 SLAKPLGM-----GVKASGGIRSGIDAV 208
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPE-LFSEVKQMKEKCEEKI 59
GFP GQ LE +L E + + + E+D+V SL PE ++ EV + + +
Sbjct: 79 GFPLGQAPLEVKLVEAQTVLEAGATELDVVPHLSL-----GPEAVYREVSGIVKLAKSYG 133
Query: 60 HMKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTG 96
+ ++ L + + ++ AG+D +KTSTG
Sbjct: 134 AVVKVILEAPLWDDKTLSLLVDSSRRAGADIVKTSTG 170
>pdb|1JT9|A Chain A, Structure Of The Mutant F174a T Form Of The
Glucosamine-6-Phosphate Deaminase From E.Coli
Length = 266
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 18 LLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEE--KIHMKTILAVGELKTSEN 75
+ + D VDI + +LN P++ +E +Q +EK KIH L +G + +
Sbjct: 88 FMHRNFFDHVDIPAENINLLNGNAPDIDAECRQYEEKIRSYGKIH----LFMGGVGNDGH 143
Query: 76 IYYASMTAMFAGSDFIKTST 95
I + + A IKT T
Sbjct: 144 IAFNEPASSLASRTRIKTLT 163
>pdb|1HOR|A Chain A, Structure And Catalytic Mechanism Of Glucosamine
6-phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1HOR|B Chain B, Structure And Catalytic Mechanism Of Glucosamine
6-phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1DEA|A Chain A, Structure And Catalytic Mechanism Of Glucosamine
6-Phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1DEA|B Chain B, Structure And Catalytic Mechanism Of Glucosamine
6-Phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1HOT|A Chain A, Glucosamine 6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucosamine-6-Phosphate
pdb|1HOT|B Chain B, Glucosamine 6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucosamine-6-Phosphate
pdb|1CD5|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, T Conformer
pdb|1FQO|A Chain A, Glucosamine 6-Phosphate Deaminase Complexed With The
Substrate Of The Reverse Reaction Fructose 6-Phosphate
(Open Form)
pdb|1FQO|B Chain B, Glucosamine 6-Phosphate Deaminase Complexed With The
Substrate Of The Reverse Reaction Fructose 6-Phosphate
(Open Form)
pdb|1FRZ|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, R
Conformer. Complexed With The Allosteric Activator
N-Acetyl-Glucosamine-6-Phosphate At 2.2 A Resolution
pdb|1FRZ|B Chain B, Glucosamine-6-Phosphate Deaminase From E.Coli, R
Conformer. Complexed With The Allosteric Activator
N-Acetyl-Glucosamine-6-Phosphate At 2.2 A Resolution
pdb|1FS5|A Chain A, A Discovery Of Three Alternate Conformations In The Active
Site Of Glucosamine-6-Phosphate Isomerase
pdb|1FS5|B Chain B, A Discovery Of Three Alternate Conformations In The Active
Site Of Glucosamine-6-Phosphate Isomerase
pdb|1FS6|A Chain A, Glucosamine-6-phosphate Deaminase From E.coli, T
Conformer, At 2.2a Resolution
pdb|1FSF|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, T
Conformer, At 1.9a Resolution
pdb|2WU1|A Chain A, Glucosamine-6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucoamine-6-Phosphate
Both In The Active And Allosteric Sites.
pdb|2WU1|B Chain B, Glucosamine-6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucoamine-6-Phosphate
Both In The Active And Allosteric Sites
Length = 266
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 18 LLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEE--KIHMKTILAVGELKTSEN 75
+ + D VDI + +LN P++ +E +Q +EK KIH L +G + +
Sbjct: 88 FMHRNFFDHVDIPAENINLLNGNAPDIDAECRQYEEKIRSYGKIH----LFMGGVGNDGH 143
Query: 76 IYYASMTAMFAGSDFIKTST 95
I + + A IKT T
Sbjct: 144 IAFNEPASSLASRTRIKTLT 163
>pdb|1WVR|A Chain A, Crystal Structure Of A Crisp Family Ca-Channel Blocker
Derived From Snake Venom
Length = 221
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 34 SLVLNNQW-PELFSEVKQMKEKCEEKIHMKTILAVGELKTSENIYYASMTAMFAGSDFIK 92
S +L +W PE + ++ +C E + +G +K ENIY A+ A + +D I
Sbjct: 34 SNMLKMEWYPEAAANAERWAYRCIESHSSRDSRVIGGIKCGENIYMATYPAKW--TDIIH 91
Query: 93 TSTGKEK 99
G+ K
Sbjct: 92 AWHGEYK 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,143,924
Number of Sequences: 62578
Number of extensions: 387989
Number of successful extensions: 1194
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1095
Number of HSP's gapped (non-prelim): 67
length of query: 387
length of database: 14,973,337
effective HSP length: 101
effective length of query: 286
effective length of database: 8,652,959
effective search space: 2474746274
effective search space used: 2474746274
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)