Query psy10250
Match_columns 387
No_of_seqs 249 out of 2133
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 21:42:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10250.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10250hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05283 deoxyribose-phosphate 100.0 1.4E-75 3.1E-80 559.4 27.3 241 125-386 5-248 (257)
2 COG0274 DeoC Deoxyribose-phosp 100.0 6.6E-73 1.4E-77 527.1 23.1 216 128-383 6-221 (228)
3 TIGR00126 deoC deoxyribose-pho 100.0 7.3E-66 1.6E-70 482.1 22.0 209 130-380 2-210 (211)
4 PRK00507 deoxyribose-phosphate 100.0 6E-64 1.3E-68 472.4 24.3 213 128-382 4-216 (221)
5 KOG3981|consensus 100.0 1E-62 2.2E-67 457.9 18.2 279 103-385 15-310 (326)
6 cd00959 DeoC 2-deoxyribose-5-p 100.0 5.5E-54 1.2E-58 399.3 22.8 203 130-374 1-203 (203)
7 PF01791 DeoC: DeoC/LacD famil 100.0 1.2E-44 2.6E-49 343.1 14.3 214 130-381 2-235 (236)
8 COG0274 DeoC Deoxyribose-phosp 100.0 5E-36 1.1E-40 279.9 11.7 113 1-115 68-180 (228)
9 PRK05283 deoxyribose-phosphate 100.0 1.1E-34 2.4E-39 277.9 11.9 110 1-110 74-183 (257)
10 TIGR00126 deoC deoxyribose-pho 100.0 5.6E-32 1.2E-36 253.6 12.2 113 1-116 61-173 (211)
11 PRK00507 deoxyribose-phosphate 100.0 1.1E-29 2.5E-34 239.6 11.6 108 1-110 65-172 (221)
12 PRK07226 fructose-bisphosphate 100.0 6.1E-29 1.3E-33 240.4 14.0 199 130-382 22-237 (267)
13 TIGR01949 AroFGH_arch predicte 99.9 2.5E-27 5.5E-32 227.8 14.4 201 130-380 19-231 (258)
14 cd00959 DeoC 2-deoxyribose-5-p 99.9 2.2E-27 4.8E-32 220.8 12.1 113 1-116 60-172 (203)
15 cd00958 DhnA Class I fructose- 99.9 5.3E-23 1.2E-27 194.4 15.5 187 133-361 5-208 (235)
16 KOG3981|consensus 99.8 8E-22 1.7E-26 184.6 6.8 109 1-110 136-244 (326)
17 PF01791 DeoC: DeoC/LacD famil 99.8 2.6E-21 5.7E-26 183.5 8.9 107 1-110 62-181 (236)
18 cd00945 Aldolase_Class_I Class 99.7 7.1E-16 1.5E-20 139.5 23.6 195 134-361 1-195 (201)
19 PRK07226 fructose-bisphosphate 99.2 1.3E-11 2.7E-16 119.8 7.9 85 3-94 88-180 (267)
20 TIGR01949 AroFGH_arch predicte 99.2 5.3E-11 1.2E-15 114.7 7.7 90 1-94 80-176 (258)
21 cd00958 DhnA Class I fructose- 99.0 1.1E-09 2.4E-14 103.6 8.1 87 1-94 69-163 (235)
22 cd00945 Aldolase_Class_I Class 98.5 3E-06 6.4E-11 76.5 13.2 99 4-102 59-157 (201)
23 cd02803 OYE_like_FMN_family Ol 98.5 4.6E-06 9.9E-11 82.6 15.3 138 223-375 145-312 (327)
24 cd04738 DHOD_2_like Dihydrooro 98.4 6.9E-06 1.5E-10 82.1 15.2 123 231-362 159-304 (327)
25 cd02940 DHPD_FMN Dihydropyrimi 98.3 8.3E-05 1.8E-09 73.4 19.1 157 203-383 102-295 (299)
26 cd02810 DHOD_DHPD_FMN Dihydroo 98.2 8.6E-05 1.9E-09 72.3 18.5 137 217-362 109-267 (289)
27 PRK05286 dihydroorotate dehydr 98.1 0.00016 3.4E-09 73.0 17.2 134 219-362 157-313 (344)
28 cd04729 NanE N-acetylmannosami 97.9 0.0013 2.9E-08 61.7 18.8 178 140-362 21-201 (219)
29 PRK08227 autoinducer 2 aldolas 97.9 0.0003 6.5E-09 68.7 14.7 187 131-361 26-220 (264)
30 PRK09250 fructose-bisphosphate 97.8 0.00014 3E-09 73.3 11.1 181 144-355 89-304 (348)
31 cd00452 KDPG_aldolase KDPG and 97.8 0.0011 2.4E-08 61.1 16.0 160 143-378 13-175 (190)
32 cd04741 DHOD_1A_like Dihydroor 97.8 0.0015 3.3E-08 64.4 17.7 142 219-374 103-274 (294)
33 TIGR00736 nifR3_rel_arch TIM-b 97.7 0.0023 5E-08 61.3 17.4 199 122-362 5-215 (231)
34 PRK07259 dihydroorotate dehydr 97.7 0.0023 5E-08 62.9 17.6 132 218-362 103-258 (301)
35 cd02801 DUS_like_FMN Dihydrour 97.7 0.0037 8E-08 58.5 17.3 137 200-353 53-203 (231)
36 PRK01130 N-acetylmannosamine-6 97.6 0.0049 1.1E-07 57.9 17.8 181 141-374 18-204 (221)
37 PRK07565 dihydroorotate dehydr 97.6 0.0039 8.6E-08 62.5 18.0 132 218-362 113-263 (334)
38 PRK06852 aldolase; Validated 97.6 0.0016 3.5E-08 64.8 14.9 184 142-361 55-259 (304)
39 cd02809 alpha_hydroxyacid_oxid 97.5 0.0019 4.2E-08 63.7 14.0 116 222-362 132-251 (299)
40 cd04740 DHOD_1B_like Dihydroor 97.5 0.0084 1.8E-07 58.7 18.3 132 218-362 101-255 (296)
41 TIGR03128 RuMP_HxlA 3-hexulose 97.5 0.003 6.6E-08 58.4 13.6 113 224-362 68-181 (206)
42 cd04739 DHOD_like Dihydroorota 97.4 0.0094 2E-07 59.7 17.9 136 219-374 112-268 (325)
43 TIGR01037 pyrD_sub1_fam dihydr 97.4 0.012 2.5E-07 57.9 18.2 118 232-362 118-258 (300)
44 PTZ00314 inosine-5'-monophosph 97.4 0.014 3.1E-07 61.8 19.6 135 200-364 228-370 (495)
45 TIGR00737 nifR3_yhdG putative 97.4 0.0058 1.2E-07 60.8 15.9 132 215-362 71-217 (319)
46 TIGR01036 pyrD_sub2 dihydrooro 97.4 0.01 2.2E-07 59.8 17.7 128 232-375 166-320 (335)
47 PRK08318 dihydropyrimidine deh 97.3 0.019 4.1E-07 59.3 18.6 143 214-374 108-284 (420)
48 TIGR02151 IPP_isom_2 isopenten 97.2 0.0078 1.7E-07 60.5 14.8 126 222-362 133-278 (333)
49 PRK10415 tRNA-dihydrouridine s 97.2 0.013 2.7E-07 58.7 16.1 133 213-362 72-219 (321)
50 COG1830 FbaB DhnA-type fructos 97.2 0.016 3.4E-07 56.5 16.1 184 134-362 29-232 (265)
51 cd02911 arch_FMN Archeal FMN-b 97.2 0.02 4.3E-07 54.8 16.0 122 218-362 84-215 (233)
52 cd02811 IDI-2_FMN Isopentenyl- 97.2 0.014 3.1E-07 58.4 15.7 117 232-362 140-279 (326)
53 PRK02506 dihydroorotate dehydr 97.1 0.012 2.5E-07 58.7 14.4 153 202-374 94-272 (310)
54 cd07948 DRE_TIM_HCS Saccharomy 97.0 0.057 1.2E-06 52.6 18.1 199 142-381 18-230 (262)
55 PRK05437 isopentenyl pyrophosp 97.0 0.04 8.6E-07 56.0 17.5 118 232-362 148-285 (352)
56 PRK06843 inosine 5-monophospha 97.0 0.037 8E-07 57.3 16.8 119 221-364 154-282 (404)
57 PRK12858 tagatose 1,6-diphosph 97.0 0.055 1.2E-06 54.8 17.6 188 143-361 46-268 (340)
58 PRK10550 tRNA-dihydrouridine s 96.9 0.047 1E-06 54.5 16.6 131 216-353 72-214 (312)
59 PRK09140 2-dehydro-3-deoxy-6-p 96.9 0.11 2.3E-06 49.0 17.8 160 142-377 18-182 (206)
60 PF01180 DHO_dh: Dihydroorotat 96.9 0.016 3.4E-07 56.9 12.8 146 204-362 100-268 (295)
61 TIGR01302 IMP_dehydrog inosine 96.8 0.025 5.4E-07 59.2 14.1 120 220-362 224-351 (450)
62 PRK04302 triosephosphate isome 96.8 0.13 2.7E-06 48.7 17.4 181 141-375 14-205 (223)
63 cd00381 IMPDH IMPDH: The catal 96.8 0.042 9.1E-07 55.1 14.9 119 222-363 96-222 (325)
64 cd04735 OYE_like_4_FMN Old yel 96.7 0.055 1.2E-06 54.8 15.0 127 224-353 149-304 (353)
65 PRK05848 nicotinate-nucleotide 96.6 0.018 3.9E-07 56.6 10.9 93 252-376 167-259 (273)
66 TIGR03217 4OH_2_O_val_ald 4-hy 96.6 0.59 1.3E-05 47.2 21.6 205 72-315 22-235 (333)
67 COG0042 tRNA-dihydrouridine sy 96.5 0.058 1.2E-06 54.2 14.1 129 214-353 74-218 (323)
68 cd04726 KGPDC_HPS 3-Keto-L-gul 96.5 0.22 4.7E-06 45.6 16.9 114 223-362 68-181 (202)
69 cd04734 OYE_like_3_FMN Old yel 96.5 0.071 1.5E-06 53.8 14.8 126 224-353 146-305 (343)
70 cd02930 DCR_FMN 2,4-dienoyl-Co 96.5 0.056 1.2E-06 54.6 14.1 127 223-353 141-296 (353)
71 cd04722 TIM_phosphate_binding 96.5 0.11 2.4E-06 45.9 14.3 118 225-362 77-194 (200)
72 cd07938 DRE_TIM_HMGL 3-hydroxy 96.5 0.6 1.3E-05 45.7 20.6 94 205-307 135-230 (274)
73 cd02932 OYE_YqiM_FMN Old yello 96.5 0.088 1.9E-06 52.8 15.0 128 222-353 157-310 (336)
74 PRK07107 inosine 5-monophospha 96.5 0.054 1.2E-06 57.6 14.1 125 222-364 244-378 (502)
75 COG0167 PyrD Dihydroorotate de 96.5 0.094 2E-06 52.5 14.9 110 249-374 145-272 (310)
76 PRK05458 guanosine 5'-monophos 96.5 0.063 1.4E-06 54.1 13.8 122 218-363 95-226 (326)
77 TIGR01769 GGGP geranylgeranylg 96.4 0.23 5E-06 46.9 16.2 173 136-362 2-200 (205)
78 PLN02274 inosine-5'-monophosph 96.3 0.043 9.4E-07 58.3 12.5 134 201-363 236-376 (505)
79 PRK05567 inosine 5'-monophosph 96.3 0.065 1.4E-06 56.6 13.6 131 201-363 216-356 (486)
80 PLN02746 hydroxymethylglutaryl 96.3 0.66 1.4E-05 47.2 20.2 135 204-361 182-326 (347)
81 TIGR00742 yjbN tRNA dihydrouri 96.3 0.15 3.2E-06 51.1 15.3 134 215-352 63-214 (318)
82 cd07943 DRE_TIM_HOA 4-hydroxy- 96.3 0.56 1.2E-05 45.3 18.9 129 223-375 89-225 (263)
83 PLN02495 oxidoreductase, actin 96.3 0.54 1.2E-05 48.5 19.6 143 216-374 124-301 (385)
84 PRK08227 autoinducer 2 aldolas 96.3 0.018 3.9E-07 56.4 8.4 82 10-94 94-178 (264)
85 cd03332 LMO_FMN L-Lactate 2-mo 96.3 0.023 4.9E-07 58.5 9.5 91 255-363 243-333 (383)
86 TIGR01182 eda Entner-Doudoroff 96.2 0.14 2.9E-06 48.4 13.5 158 143-377 17-179 (204)
87 PRK08195 4-hyroxy-2-oxovalerat 96.1 1.5 3.3E-05 44.3 21.8 206 72-315 23-236 (337)
88 cd04736 MDH_FMN Mandelate dehy 96.1 0.027 5.9E-07 57.4 9.2 91 253-363 224-314 (361)
89 cd02803 OYE_like_FMN_family Ol 96.1 0.032 6.9E-07 55.3 9.5 84 14-98 145-252 (327)
90 PRK12330 oxaloacetate decarbox 96.1 0.53 1.2E-05 50.1 18.9 207 73-315 26-247 (499)
91 TIGR01303 IMP_DH_rel_1 IMP deh 96.1 0.12 2.6E-06 54.6 14.1 118 223-363 228-353 (475)
92 TIGR00262 trpA tryptophan synt 96.0 0.12 2.7E-06 50.1 12.9 128 225-382 108-236 (256)
93 PRK07807 inosine 5-monophospha 96.0 0.082 1.8E-06 55.9 12.5 122 222-368 229-360 (479)
94 TIGR01306 GMP_reduct_2 guanosi 96.0 0.71 1.5E-05 46.5 18.4 121 223-363 97-223 (321)
95 cd03174 DRE_TIM_metallolyase D 96.0 1.2 2.7E-05 42.2 19.4 152 201-375 66-230 (265)
96 PF04131 NanE: Putative N-acet 96.0 0.23 4.9E-06 46.5 13.7 159 179-374 14-175 (192)
97 PRK11815 tRNA-dihydrouridine s 96.0 0.28 6.1E-06 49.3 15.6 135 215-353 73-225 (333)
98 PRK05742 nicotinate-nucleotide 95.9 0.062 1.4E-06 52.9 10.5 87 254-376 177-263 (277)
99 cd07937 DRE_TIM_PC_TC_5S Pyruv 95.9 1.3 2.7E-05 43.4 19.6 129 175-314 106-238 (275)
100 PF01645 Glu_synthase: Conserv 95.9 0.1 2.2E-06 53.4 12.3 151 210-377 146-308 (368)
101 PF04481 DUF561: Protein of un 95.9 0.89 1.9E-05 43.5 17.5 192 142-384 23-224 (242)
102 cd00331 IGPS Indole-3-glycerol 95.9 0.36 7.9E-06 45.0 15.1 117 223-374 85-203 (217)
103 cd04737 LOX_like_FMN L-Lactate 95.8 0.071 1.5E-06 54.2 10.6 90 255-362 211-300 (351)
104 PRK05692 hydroxymethylglutaryl 95.8 0.59 1.3E-05 46.2 16.9 140 221-373 81-237 (287)
105 COG1891 Uncharacterized protei 95.8 0.057 1.2E-06 50.0 8.7 113 221-340 9-121 (235)
106 PLN02826 dihydroorotate dehydr 95.8 0.15 3.3E-06 52.9 13.0 86 278-374 272-372 (409)
107 PRK13523 NADPH dehydrogenase N 95.7 0.2 4.3E-06 50.6 13.4 125 224-353 147-295 (337)
108 PRK14041 oxaloacetate decarbox 95.7 1.3 2.8E-05 46.8 19.7 198 73-308 24-234 (467)
109 PF01070 FMN_dh: FMN-dependent 95.6 0.09 1.9E-06 53.5 10.5 86 255-362 215-304 (356)
110 PF00682 HMGL-like: HMGL-like 95.6 2 4.3E-05 40.5 19.0 221 3-318 7-231 (237)
111 PRK07428 nicotinate-nucleotide 95.6 0.14 3E-06 50.8 11.3 93 253-377 182-274 (288)
112 cd04733 OYE_like_2_FMN Old yel 95.5 0.53 1.2E-05 47.2 15.6 128 223-353 153-312 (338)
113 PRK11197 lldD L-lactate dehydr 95.5 0.099 2.1E-06 53.8 10.5 90 255-362 235-324 (381)
114 PRK11858 aksA trans-homoaconit 95.5 1 2.3E-05 46.1 17.9 142 221-375 77-228 (378)
115 PRK09250 fructose-bisphosphate 95.5 0.04 8.6E-07 55.8 7.4 77 12-94 148-237 (348)
116 TIGR03217 4OH_2_O_val_ald 4-hy 95.5 3.3 7.1E-05 41.9 21.1 131 222-375 90-228 (333)
117 PRK08385 nicotinate-nucleotide 95.5 0.14 3E-06 50.6 10.8 92 253-376 169-261 (278)
118 TIGR02090 LEU1_arch isopropylm 95.4 1.2 2.6E-05 45.4 17.7 142 221-375 73-224 (363)
119 TIGR02660 nifV_homocitr homoci 95.4 1.8 4E-05 44.0 19.0 195 142-375 19-225 (365)
120 cd07938 DRE_TIM_HMGL 3-hydroxy 95.3 2.4 5.3E-05 41.5 19.1 140 222-372 76-230 (274)
121 cd03174 DRE_TIM_metallolyase D 95.3 2.8 6.1E-05 39.8 20.1 202 69-315 15-237 (265)
122 PRK07028 bifunctional hexulose 95.2 0.26 5.6E-06 51.1 12.6 114 224-363 73-186 (430)
123 cd07939 DRE_TIM_NifV Streptomy 95.2 1.9 4.1E-05 41.6 17.7 192 140-375 14-222 (259)
124 PLN02746 hydroxymethylglutaryl 95.2 2.1 4.5E-05 43.7 18.6 138 221-372 123-278 (347)
125 cd02808 GltS_FMN Glutamate syn 95.2 0.22 4.8E-06 51.3 11.8 102 250-364 198-311 (392)
126 TIGR02708 L_lactate_ox L-lacta 95.2 0.19 4E-06 51.5 11.0 86 255-362 218-307 (367)
127 PRK07455 keto-hydroxyglutarate 95.1 1.3 2.7E-05 41.0 15.6 160 142-377 20-183 (187)
128 PRK00278 trpC indole-3-glycero 95.1 0.53 1.1E-05 45.8 13.6 118 224-374 125-242 (260)
129 cd04727 pdxS PdxS is a subunit 95.1 0.31 6.7E-06 48.1 11.9 114 222-362 77-220 (283)
130 PF01207 Dus: Dihydrouridine s 95.1 0.18 4E-06 50.1 10.6 128 215-353 62-203 (309)
131 PLN02535 glycolate oxidase 95.1 0.13 2.8E-06 52.6 9.7 89 255-362 213-302 (364)
132 PRK12331 oxaloacetate decarbox 95.1 3.6 7.9E-05 43.3 20.6 198 73-308 25-235 (448)
133 cd07940 DRE_TIM_IPMS 2-isoprop 95.1 2.2 4.8E-05 41.3 17.9 190 142-375 16-229 (268)
134 PF00682 HMGL-like: HMGL-like 95.0 1.5 3.2E-05 41.3 16.2 197 143-375 11-221 (237)
135 PRK04180 pyridoxal biosynthesi 95.0 0.12 2.6E-06 51.2 8.7 114 222-362 86-229 (293)
136 PF00478 IMPDH: IMP dehydrogen 94.9 0.64 1.4E-05 47.4 13.9 176 127-363 54-236 (352)
137 cd07939 DRE_TIM_NifV Streptomy 94.9 3.3 7.2E-05 39.9 18.4 99 209-316 128-230 (259)
138 PRK08195 4-hyroxy-2-oxovalerat 94.8 5.1 0.00011 40.5 21.2 147 200-376 76-230 (337)
139 COG1830 FbaB DhnA-type fructos 94.8 0.41 8.8E-06 46.9 11.8 196 74-326 43-256 (265)
140 COG0069 GltB Glutamate synthas 94.8 0.25 5.4E-06 52.2 10.8 158 201-378 239-409 (485)
141 PLN02321 2-isopropylmalate syn 94.7 4.1 8.8E-05 44.8 20.3 228 6-320 104-339 (632)
142 cd04732 HisA HisA. Phosphorib 94.7 2.6 5.5E-05 39.5 16.7 145 182-362 58-214 (234)
143 PRK02227 hypothetical protein; 94.7 0.36 7.8E-06 46.6 10.9 76 222-303 10-87 (238)
144 KOG2335|consensus 94.7 0.86 1.9E-05 46.4 14.0 132 213-362 80-228 (358)
145 PRK12581 oxaloacetate decarbox 94.6 4.3 9.2E-05 43.1 19.7 198 73-308 34-244 (468)
146 TIGR01305 GMP_reduct_1 guanosi 94.6 0.8 1.7E-05 46.4 13.5 118 223-363 110-237 (343)
147 cd02931 ER_like_FMN Enoate red 94.6 1.5 3.2E-05 45.0 15.8 126 224-353 155-325 (382)
148 COG1646 Predicted phosphate-bi 94.5 0.3 6.4E-06 47.0 9.9 175 132-362 15-215 (240)
149 cd04731 HisF The cyclase subun 94.5 1.6 3.5E-05 41.4 15.1 145 182-353 56-213 (243)
150 cd02922 FCB2_FMN Flavocytochro 94.5 0.46 9.9E-06 48.3 11.9 93 253-362 201-295 (344)
151 PF01729 QRPTase_C: Quinolinat 94.5 0.32 7E-06 44.5 9.8 92 253-376 66-157 (169)
152 PRK06852 aldolase; Validated 94.5 0.11 2.3E-06 52.0 7.0 78 11-94 116-208 (304)
153 TIGR00078 nadC nicotinate-nucl 94.4 0.43 9.3E-06 46.7 11.1 89 253-376 164-252 (265)
154 TIGR00343 pyridoxal 5'-phospha 94.4 0.79 1.7E-05 45.4 12.8 114 222-362 79-223 (287)
155 PRK08649 inosine 5-monophospha 94.4 1.1 2.3E-05 46.1 14.3 126 223-367 145-285 (368)
156 cd01571 NAPRTase_B Nicotinate 94.4 0.41 8.8E-06 47.7 10.9 103 253-376 170-275 (302)
157 cd07941 DRE_TIM_LeuA3 Desulfob 94.3 5.6 0.00012 38.8 19.7 202 141-375 15-235 (273)
158 cd02812 PcrB_like PcrB_like pr 94.3 2.1 4.5E-05 40.9 15.1 151 175-362 25-199 (219)
159 cd07943 DRE_TIM_HOA 4-hydroxy- 94.3 5.4 0.00012 38.5 21.1 130 175-315 100-232 (263)
160 cd04747 OYE_like_5_FMN Old yel 94.2 0.97 2.1E-05 46.2 13.6 121 223-353 148-318 (361)
161 TIGR01768 GGGP-family geranylg 94.2 2.4 5.1E-05 40.7 15.2 151 173-362 25-203 (223)
162 cd01572 QPRTase Quinolinate ph 94.1 0.54 1.2E-05 46.1 11.1 88 254-376 169-256 (268)
163 cd02933 OYE_like_FMN Old yello 94.1 0.92 2E-05 45.8 13.0 122 224-353 157-304 (338)
164 PRK07896 nicotinate-nucleotide 94.1 0.46 9.9E-06 47.2 10.6 92 252-376 185-276 (289)
165 PRK08072 nicotinate-nucleotide 94.1 0.58 1.3E-05 46.1 11.2 89 253-376 174-262 (277)
166 COG1902 NemA NADH:flavin oxido 94.0 2.2 4.7E-05 43.7 15.5 128 224-353 154-308 (363)
167 PLN02979 glycolate oxidase 94.0 0.34 7.4E-06 49.6 9.6 90 255-362 213-302 (366)
168 cd07945 DRE_TIM_CMS Leptospira 93.9 0.55 1.2E-05 46.2 10.8 139 224-375 79-231 (280)
169 PRK09389 (R)-citramalate synth 93.9 4.2 9E-05 43.3 18.1 140 222-374 76-225 (488)
170 PRK09016 quinolinate phosphori 93.9 0.55 1.2E-05 46.8 10.7 88 253-376 195-282 (296)
171 cd02929 TMADH_HD_FMN Trimethyl 93.9 1.7 3.6E-05 44.5 14.5 126 223-353 154-309 (370)
172 PRK06106 nicotinate-nucleotide 93.8 0.63 1.4E-05 46.1 10.9 89 253-376 180-268 (281)
173 CHL00200 trpA tryptophan synth 93.8 1.6 3.4E-05 42.7 13.6 127 225-381 112-239 (263)
174 COG3010 NanE Putative N-acetyl 93.8 3.4 7.4E-05 39.3 15.1 162 178-373 47-210 (229)
175 PRK14040 oxaloacetate decarbox 93.8 12 0.00027 40.8 21.6 203 72-314 25-244 (593)
176 TIGR01108 oadA oxaloacetate de 93.8 9.1 0.0002 41.7 20.6 205 72-314 19-238 (582)
177 PRK06559 nicotinate-nucleotide 93.7 0.67 1.4E-05 46.1 10.9 89 252-375 182-270 (290)
178 PRK06543 nicotinate-nucleotide 93.6 0.76 1.7E-05 45.5 11.1 91 250-375 176-266 (281)
179 PRK05692 hydroxymethylglutaryl 93.5 8.4 0.00018 38.1 23.2 90 210-307 145-236 (287)
180 PF04476 DUF556: Protein of un 93.5 0.73 1.6E-05 44.4 10.4 107 222-338 10-119 (235)
181 PRK05718 keto-hydroxyglutarate 93.5 3.2 7E-05 39.3 14.8 116 218-353 26-174 (212)
182 TIGR01304 IMP_DH_rel_2 IMP deh 93.5 0.47 1E-05 48.6 9.7 121 223-362 146-279 (369)
183 cd01573 modD_like ModD; Quinol 93.5 0.8 1.7E-05 45.0 10.9 90 254-376 171-260 (272)
184 PRK06096 molybdenum transport 93.4 0.73 1.6E-05 45.7 10.5 89 248-362 171-259 (284)
185 TIGR00007 phosphoribosylformim 93.2 3.2 6.9E-05 38.9 14.3 125 222-374 84-220 (230)
186 PRK12331 oxaloacetate decarbox 93.2 11 0.00024 39.8 19.5 138 214-373 91-235 (448)
187 COG0502 BioB Biotin synthase a 93.1 0.79 1.7E-05 46.4 10.4 119 216-352 84-214 (335)
188 PRK12655 fructose-6-phosphate 93.1 5.3 0.00011 38.2 15.5 118 217-362 64-182 (220)
189 PRK06552 keto-hydroxyglutarate 93.0 5.7 0.00012 37.7 15.6 62 292-377 125-186 (213)
190 PLN03228 methylthioalkylmalate 93.0 15 0.00032 39.4 21.0 106 209-319 228-337 (503)
191 cd07947 DRE_TIM_Re_CS Clostrid 93.0 9.8 0.00021 37.5 17.8 143 222-375 77-243 (279)
192 PLN02493 probable peroxisomal 92.9 0.93 2E-05 46.5 10.8 90 255-362 214-303 (367)
193 PRK12653 fructose-6-phosphate 92.9 5.9 0.00013 37.8 15.6 155 174-362 20-182 (220)
194 TIGR00693 thiE thiamine-phosph 92.8 5 0.00011 36.5 14.7 62 291-362 111-175 (196)
195 cd02810 DHOD_DHPD_FMN Dihydroo 92.8 1.7 3.6E-05 42.3 12.1 125 235-365 67-194 (289)
196 cd03316 MR_like Mandelate race 92.6 7.6 0.00016 38.9 16.9 146 217-382 139-286 (357)
197 TIGR03151 enACPred_II putative 92.6 3.9 8.4E-05 40.8 14.6 82 270-373 110-191 (307)
198 PRK13307 bifunctional formalde 92.6 2.2 4.7E-05 44.2 13.1 125 225-376 243-367 (391)
199 PRK09427 bifunctional indole-3 92.6 4.5 9.8E-05 42.7 15.7 201 14-301 123-334 (454)
200 cd04730 NPD_like 2-Nitropropan 92.6 2 4.4E-05 40.2 12.0 110 223-362 71-180 (236)
201 PRK13813 orotidine 5'-phosphat 92.6 4 8.7E-05 38.0 13.9 127 224-379 72-204 (215)
202 PRK00915 2-isopropylmalate syn 92.5 7 0.00015 41.8 17.3 140 223-375 79-236 (513)
203 PRK08255 salicylyl-CoA 5-hydro 92.5 3.2 6.9E-05 46.4 15.3 127 223-353 555-707 (765)
204 TIGR03572 WbuZ glycosyl amidat 92.5 4.8 0.0001 37.9 14.5 64 285-362 155-222 (232)
205 PRK09282 pyruvate carboxylase 92.5 16 0.00035 39.9 20.1 198 73-308 25-235 (592)
206 PRK14040 oxaloacetate decarbox 92.4 9.3 0.0002 41.7 18.2 195 6-249 23-240 (593)
207 cd01568 QPRTase_NadC Quinolina 92.1 1.9 4E-05 42.3 11.4 87 255-376 169-257 (269)
208 PRK02227 hypothetical protein; 92.1 0.66 1.4E-05 44.8 8.0 75 13-93 10-86 (238)
209 cd00564 TMP_TenI Thiamine mono 92.0 5.5 0.00012 35.5 13.7 61 290-362 109-173 (196)
210 cd04728 ThiG Thiazole synthase 91.9 1.9 4.2E-05 41.9 11.0 124 213-362 70-199 (248)
211 TIGR01334 modD putative molybd 91.9 1.5 3.2E-05 43.3 10.5 89 248-362 170-258 (277)
212 COG0159 TrpA Tryptophan syntha 91.8 14 0.0003 36.4 16.9 86 282-382 133-242 (265)
213 PRK12858 tagatose 1,6-diphosph 91.6 2.1 4.6E-05 43.5 11.5 132 14-156 110-264 (340)
214 PRK12581 oxaloacetate decarbox 91.6 9.7 0.00021 40.4 16.7 232 8-299 33-286 (468)
215 PRK11750 gltB glutamate syntha 91.4 0.94 2E-05 53.6 9.8 95 257-363 987-1092(1485)
216 PRK06978 nicotinate-nucleotide 91.4 1.9 4.1E-05 43.0 10.6 86 254-375 193-278 (294)
217 cd07937 DRE_TIM_PC_TC_5S Pyruv 91.4 10 0.00022 37.1 15.7 141 213-376 85-233 (275)
218 PRK06015 keto-hydroxyglutarate 91.2 7.6 0.00017 36.6 14.0 151 143-361 13-166 (201)
219 PF00218 IGPS: Indole-3-glycer 91.2 0.85 1.8E-05 44.5 7.8 176 139-374 64-240 (254)
220 PF04476 DUF556: Protein of un 91.1 1 2.3E-05 43.4 8.2 76 12-93 9-86 (235)
221 TIGR00875 fsa_talC_mipB fructo 91.0 11 0.00025 35.7 15.1 120 216-363 61-181 (213)
222 COG1891 Uncharacterized protei 91.0 0.74 1.6E-05 42.8 6.7 78 12-94 9-87 (235)
223 COG0157 NadC Nicotinate-nucleo 91.0 1.9 4.1E-05 42.6 10.0 86 252-363 173-258 (280)
224 cd03319 L-Ala-DL-Glu_epimerase 90.9 11 0.00025 37.1 15.8 140 216-381 133-273 (316)
225 PRK13957 indole-3-glycerol-pho 90.9 1.8 3.9E-05 42.1 9.7 118 221-374 113-232 (247)
226 TIGR00735 hisF imidazoleglycer 90.8 6.9 0.00015 37.6 13.8 114 222-353 86-219 (254)
227 PRK00748 1-(5-phosphoribosyl)- 90.8 3.9 8.6E-05 38.3 11.9 139 184-353 61-210 (233)
228 cd02932 OYE_YqiM_FMN Old yello 90.5 1.6 3.4E-05 43.8 9.3 78 286-365 157-259 (336)
229 PRK13585 1-(5-phosphoribosyl)- 90.3 11 0.00024 35.6 14.5 62 286-362 152-217 (241)
230 PRK12344 putative alpha-isopro 90.2 27 0.00059 37.5 18.8 203 141-375 22-241 (524)
231 COG5016 Pyruvate/oxaloacetate 90.1 10 0.00022 39.5 14.7 178 143-359 95-279 (472)
232 PRK01033 imidazole glycerol ph 90.1 9.6 0.00021 36.8 14.1 118 223-362 87-221 (258)
233 cd07944 DRE_TIM_HOA_like 4-hyd 90.0 20 0.00043 35.0 20.3 131 175-315 97-230 (266)
234 PLN02716 nicotinate-nucleotide 89.9 3.4 7.4E-05 41.5 11.0 74 269-362 203-285 (308)
235 cd07941 DRE_TIM_LeuA3 Desulfob 89.9 20 0.00044 34.9 16.6 98 209-314 140-241 (273)
236 PRK14042 pyruvate carboxylase 89.8 34 0.00075 37.4 20.5 194 74-305 26-231 (596)
237 TIGR03234 OH-pyruv-isom hydrox 89.8 9 0.0002 36.2 13.5 116 226-353 21-165 (254)
238 PRK12330 oxaloacetate decarbox 89.7 32 0.00069 36.9 20.4 164 186-374 67-239 (499)
239 PRK13802 bifunctional indole-3 89.6 2.9 6.3E-05 46.4 11.2 118 222-374 123-242 (695)
240 PRK07114 keto-hydroxyglutarate 89.5 12 0.00027 35.7 14.0 132 217-375 25-189 (222)
241 cd04724 Tryptophan_synthase_al 89.5 6.2 0.00013 37.8 12.2 128 225-382 97-224 (242)
242 TIGR01108 oadA oxaloacetate de 89.3 37 0.0008 37.1 20.2 154 200-375 69-232 (582)
243 COG2089 SpsE Sialic acid synth 89.1 19 0.00042 36.5 15.5 58 271-334 149-209 (347)
244 PRK00043 thiE thiamine-phospha 89.1 1.8 3.8E-05 39.8 7.9 108 224-362 73-183 (212)
245 PRK05096 guanosine 5'-monophos 89.1 5.3 0.00011 40.7 11.6 116 225-363 113-238 (346)
246 PRK00208 thiG thiazole synthas 88.7 4.8 0.0001 39.2 10.7 124 213-362 70-199 (250)
247 PRK12999 pyruvate carboxylase; 88.5 31 0.00068 40.6 19.0 197 73-307 554-771 (1146)
248 PRK05437 isopentenyl pyrophosp 88.4 3.7 8E-05 41.8 10.3 136 220-367 73-217 (352)
249 PRK13125 trpA tryptophan synth 88.3 5.5 0.00012 38.2 10.9 127 225-380 94-221 (244)
250 TIGR00736 nifR3_rel_arch TIM-b 88.2 8.7 0.00019 37.0 12.1 141 202-367 17-168 (231)
251 COG0119 LeuA Isopropylmalate/h 88.2 36 0.00078 35.5 21.8 218 3-317 17-240 (409)
252 TIGR00970 leuA_yeast 2-isoprop 88.1 43 0.00094 36.4 19.3 98 217-319 182-288 (564)
253 PRK14042 pyruvate carboxylase 87.9 13 0.00027 40.7 14.5 288 17-381 33-354 (596)
254 PRK07565 dihydroorotate dehydr 87.8 9.3 0.0002 38.3 12.6 114 240-364 76-194 (334)
255 PRK13587 1-(5-phosphoribosyl)- 87.8 18 0.00039 34.6 14.1 114 223-362 89-216 (234)
256 PRK01362 putative translaldola 87.6 26 0.00057 33.3 15.8 120 216-362 61-180 (214)
257 cd07940 DRE_TIM_IPMS 2-isoprop 87.2 30 0.00065 33.5 19.6 101 209-315 132-236 (268)
258 cd04731 HisF The cyclase subun 87.1 2.7 5.8E-05 39.9 7.9 64 285-362 29-95 (243)
259 cd03315 MLE_like Muconate lact 87.0 29 0.00063 33.2 18.9 151 200-381 73-225 (265)
260 PRK09485 mmuM homocysteine met 86.9 34 0.00074 33.9 18.1 66 268-342 184-251 (304)
261 PRK11572 copper homeostasis pr 86.9 9.2 0.0002 37.3 11.4 194 64-366 3-197 (248)
262 PRK13586 1-(5-phosphoribosyl)- 86.7 11 0.00024 36.1 11.9 70 285-374 148-220 (232)
263 PRK07259 dihydroorotate dehydr 86.7 7 0.00015 38.4 10.9 115 238-364 64-186 (301)
264 cd00452 KDPG_aldolase KDPG and 86.4 20 0.00043 32.8 13.1 107 218-364 15-121 (190)
265 PRK14024 phosphoribosyl isomer 86.3 12 0.00026 35.7 12.0 116 222-352 87-209 (241)
266 PF03932 CutC: CutC family; I 86.1 8 0.00017 36.5 10.3 193 63-364 1-196 (201)
267 PRK08649 inosine 5-monophospha 86.0 5.6 0.00012 40.9 10.0 91 250-364 117-212 (368)
268 cd04733 OYE_like_2_FMN Old yel 86.0 4.4 9.5E-05 40.7 9.2 78 286-365 152-254 (338)
269 PRK01060 endonuclease IV; Prov 85.8 20 0.00043 34.4 13.3 128 223-353 16-166 (281)
270 PLN02460 indole-3-glycerol-pho 85.7 5.8 0.00013 40.3 9.8 117 223-374 194-319 (338)
271 PRK09427 bifunctional indole-3 85.5 6.2 0.00013 41.7 10.3 117 222-374 122-240 (454)
272 cd00019 AP2Ec AP endonuclease 85.5 20 0.00043 34.4 13.2 128 224-353 15-163 (279)
273 COG0134 TrpC Indole-3-glycerol 85.5 8.3 0.00018 37.7 10.4 118 222-374 119-238 (254)
274 cd08210 RLP_RrRLP Ribulose bis 85.4 32 0.0007 35.3 15.1 201 23-266 91-306 (364)
275 PRK00915 2-isopropylmalate syn 85.3 57 0.0012 34.9 20.7 105 209-318 138-246 (513)
276 cd00956 Transaldolase_FSA Tran 85.1 2.3 5E-05 40.2 6.3 121 216-364 61-182 (211)
277 PRK04169 geranylgeranylglycery 85.1 6.5 0.00014 37.9 9.4 153 174-362 31-208 (232)
278 PRK10605 N-ethylmaleimide redu 85.0 39 0.00084 34.5 15.5 121 223-353 163-311 (362)
279 TIGR01304 IMP_DH_rel_2 IMP deh 84.9 7 0.00015 40.2 10.1 92 249-364 117-213 (369)
280 PRK13523 NADPH dehydrogenase N 84.7 15 0.00032 37.2 12.2 85 278-365 131-245 (337)
281 PRK08645 bifunctional homocyst 84.0 71 0.0015 35.0 18.2 191 66-342 35-235 (612)
282 PRK13111 trpA tryptophan synth 83.9 20 0.00043 35.0 12.3 109 225-353 110-220 (258)
283 cd07948 DRE_TIM_HCS Saccharomy 83.5 9.6 0.00021 37.1 10.0 79 12-90 73-157 (262)
284 cd02930 DCR_FMN 2,4-dienoyl-Co 83.3 6.3 0.00014 39.8 9.0 83 15-98 142-248 (353)
285 cd07944 DRE_TIM_HOA_like 4-hyd 83.3 47 0.001 32.3 18.2 145 201-375 71-223 (266)
286 PTZ00314 inosine-5'-monophosph 83.2 19 0.00042 38.4 12.9 74 13-100 243-316 (495)
287 cd07945 DRE_TIM_CMS Leptospira 83.1 10 0.00022 37.3 10.1 83 15-97 79-172 (280)
288 PRK13209 L-xylulose 5-phosphat 82.9 13 0.00028 35.7 10.6 120 173-302 32-184 (283)
289 PRK07107 inosine 5-monophospha 82.9 5.4 0.00012 42.6 8.6 65 287-364 245-309 (502)
290 cd02801 DUS_like_FMN Dihydrour 82.8 12 0.00027 34.7 10.2 86 7-95 64-159 (231)
291 TIGR00542 hxl6Piso_put hexulos 82.7 33 0.00071 33.0 13.4 120 173-302 27-179 (279)
292 TIGR02660 nifV_homocitr homoci 82.5 60 0.0013 33.0 21.6 99 209-316 131-233 (365)
293 PF00478 IMPDH: IMP dehydrogen 82.5 9.2 0.0002 39.1 9.7 103 248-374 70-179 (352)
294 PRK15108 biotin synthase; Prov 82.3 51 0.0011 33.4 15.1 128 216-358 76-212 (345)
295 PRK02083 imidazole glycerol ph 82.2 39 0.00084 32.3 13.5 144 184-362 61-222 (253)
296 PRK07695 transcriptional regul 82.1 6.4 0.00014 36.3 7.9 69 290-377 109-180 (201)
297 COG0119 LeuA Isopropylmalate/h 82.0 21 0.00045 37.3 12.3 138 224-372 81-228 (409)
298 PF09370 TIM-br_sig_trns: TIM- 82.0 44 0.00095 33.0 13.7 106 253-376 136-249 (268)
299 PF00809 Pterin_bind: Pterin b 81.4 4.6 9.9E-05 37.9 6.7 91 210-308 8-104 (210)
300 TIGR03586 PseI pseudaminic aci 81.4 65 0.0014 32.7 18.9 236 61-334 2-261 (327)
301 cd02940 DHPD_FMN Dihydropyrimi 81.3 11 0.00023 37.3 9.5 73 14-92 117-198 (299)
302 PLN02591 tryptophan synthase 80.9 37 0.0008 33.0 12.9 114 225-362 99-213 (250)
303 PRK09140 2-dehydro-3-deoxy-6-p 80.9 27 0.00058 32.9 11.6 109 217-364 20-128 (206)
304 cd00956 Transaldolase_FSA Tran 80.8 11 0.00024 35.6 9.0 121 222-373 9-135 (211)
305 PRK08508 biotin synthase; Prov 80.7 51 0.0011 32.2 14.0 47 216-262 40-86 (279)
306 TIGR02090 LEU1_arch isopropylm 80.7 70 0.0015 32.6 23.5 95 215-318 137-234 (363)
307 TIGR01037 pyrD_sub1_fam dihydr 80.4 34 0.00074 33.4 12.8 115 239-365 64-187 (300)
308 TIGR00737 nifR3_yhdG putative 80.2 9.1 0.0002 38.0 8.7 92 272-365 65-165 (319)
309 cd00429 RPE Ribulose-5-phospha 80.1 33 0.0007 31.2 11.8 116 223-363 71-190 (211)
310 PRK09282 pyruvate carboxylase 79.8 1E+02 0.0022 33.8 19.6 136 217-373 94-235 (592)
311 TIGR01496 DHPS dihydropteroate 79.6 63 0.0014 31.4 15.5 22 72-93 21-42 (257)
312 PRK12928 lipoyl synthase; Prov 79.5 43 0.00093 33.2 13.1 147 205-362 74-234 (290)
313 PRK08662 nicotinate phosphorib 79.5 19 0.00041 36.7 10.8 88 257-353 190-280 (343)
314 cd08205 RuBisCO_IV_RLP Ribulos 79.5 20 0.00044 36.7 11.1 129 230-362 93-225 (367)
315 cd00381 IMPDH IMPDH: The catal 79.4 12 0.00026 37.6 9.3 94 249-365 68-161 (325)
316 PLN02389 biotin synthase 79.2 42 0.00092 34.6 13.4 129 216-357 116-253 (379)
317 PRK12344 putative alpha-isopro 79.2 97 0.0021 33.4 19.9 91 216-315 155-248 (524)
318 cd04740 DHOD_1B_like Dihydroor 79.1 27 0.00058 34.1 11.5 115 238-364 62-183 (296)
319 PRK10550 tRNA-dihydrouridine s 79.1 21 0.00045 35.8 10.9 85 9-96 74-170 (312)
320 cd04739 DHOD_like Dihydroorota 79.1 38 0.00082 33.9 12.8 115 239-364 73-192 (325)
321 smart00518 AP2Ec AP endonuclea 79.0 21 0.00045 34.0 10.5 128 223-355 14-162 (273)
322 PF01261 AP_endonuc_2: Xylose 78.8 17 0.00037 32.3 9.3 123 226-353 2-152 (213)
323 COG0269 SgbH 3-hexulose-6-phos 78.6 52 0.0011 31.5 12.7 142 216-382 64-207 (217)
324 TIGR01163 rpe ribulose-phospha 78.5 52 0.0011 29.9 14.8 114 223-363 70-189 (210)
325 cd00516 PRTase_typeII Phosphor 78.4 28 0.00061 33.7 11.3 101 254-377 169-270 (281)
326 TIGR00977 LeuA_rel 2-isopropyl 78.1 1.1E+02 0.0023 33.1 20.2 220 6-315 19-245 (526)
327 PRK07188 nicotinate phosphorib 77.4 24 0.00052 36.1 10.8 103 254-374 190-312 (352)
328 PRK14114 1-(5-phosphoribosyl)- 77.2 28 0.00062 33.5 10.8 58 287-353 148-208 (241)
329 cd00331 IGPS Indole-3-glycerol 76.9 19 0.00041 33.4 9.3 81 269-363 10-97 (217)
330 PRK09997 hydroxypyruvate isome 76.8 34 0.00075 32.5 11.3 71 283-353 85-166 (258)
331 TIGR00977 LeuA_rel 2-isopropyl 76.7 39 0.00085 36.4 12.7 140 225-375 87-238 (526)
332 PLN02334 ribulose-phosphate 3- 76.6 68 0.0015 30.2 13.6 115 225-364 81-199 (229)
333 PRK07360 FO synthase subunit 2 76.6 80 0.0017 32.2 14.5 47 215-263 90-137 (371)
334 PF00809 Pterin_bind: Pterin b 76.4 7.1 0.00015 36.6 6.3 89 2-98 9-103 (210)
335 cd04723 HisA_HisF Phosphoribos 76.4 56 0.0012 31.0 12.6 33 323-362 181-213 (233)
336 PLN02495 oxidoreductase, actin 76.3 39 0.00085 35.0 12.1 113 240-363 87-210 (385)
337 TIGR01496 DHPS dihydropteroate 76.3 25 0.00053 34.2 10.2 89 210-306 12-105 (257)
338 cd04732 HisA HisA. Phosphorib 75.9 16 0.00034 34.2 8.5 62 287-362 33-97 (234)
339 PRK12656 fructose-6-phosphate 75.7 44 0.00096 32.0 11.5 119 216-362 64-184 (222)
340 PRK13210 putative L-xylulose 5 75.6 71 0.0015 30.4 13.2 121 173-302 27-179 (284)
341 PF01884 PcrB: PcrB family; I 75.4 20 0.00044 34.5 9.2 174 134-362 9-206 (230)
342 PF03060 NMO: Nitronate monoox 75.2 9.8 0.00021 38.2 7.3 81 270-373 137-220 (330)
343 TIGR03234 OH-pyruv-isom hydrox 75.2 52 0.0011 31.0 12.0 120 173-304 25-176 (254)
344 TIGR00973 leuA_bact 2-isopropy 75.0 1.2E+02 0.0027 32.3 17.4 132 232-374 89-232 (494)
345 PRK08318 dihydropyrimidine deh 74.9 47 0.001 34.3 12.5 108 248-365 81-198 (420)
346 PRK11858 aksA trans-homoaconit 74.8 19 0.00041 36.9 9.4 79 13-91 78-162 (378)
347 PRK11613 folP dihydropteroate 74.8 16 0.00034 36.2 8.5 96 202-306 15-120 (282)
348 KOG0538|consensus 74.7 22 0.00048 35.9 9.4 86 255-362 213-302 (363)
349 TIGR03151 enACPred_II putative 74.6 40 0.00086 33.6 11.4 88 249-364 46-133 (307)
350 PRK04180 pyridoxal biosynthesi 74.5 22 0.00047 35.5 9.3 111 222-364 27-145 (293)
351 cd04738 DHOD_2_like Dihydrooro 74.5 19 0.0004 36.1 9.1 71 22-96 159-238 (327)
352 PRK14024 phosphoribosyl isomer 74.4 6.3 0.00014 37.7 5.5 60 289-362 38-99 (241)
353 cd00377 ICL_PEPM Members of th 74.4 84 0.0018 30.2 14.1 136 209-362 74-221 (243)
354 TIGR03128 RuMP_HxlA 3-hexulose 74.4 12 0.00027 34.3 7.3 69 15-98 68-137 (206)
355 PRK06801 hypothetical protein; 74.1 97 0.0021 30.8 15.6 151 184-361 61-227 (286)
356 PRK11815 tRNA-dihydrouridine s 74.0 12 0.00027 37.6 7.8 92 270-365 65-169 (333)
357 PRK00230 orotidine 5'-phosphat 73.9 11 0.00024 35.9 7.0 83 282-387 134-227 (230)
358 PRK12928 lipoyl synthase; Prov 73.8 27 0.00058 34.7 9.9 154 2-183 79-279 (290)
359 PRK09997 hydroxypyruvate isome 73.6 84 0.0018 29.8 13.4 118 173-302 26-175 (258)
360 COG0269 SgbH 3-hexulose-6-phos 73.5 26 0.00057 33.5 9.2 108 255-382 45-156 (217)
361 PRK02615 thiamine-phosphate py 73.4 13 0.00028 37.9 7.7 69 290-377 254-325 (347)
362 PRK08444 hypothetical protein; 73.3 37 0.0008 34.6 11.0 140 216-361 80-276 (353)
363 PRK00748 1-(5-phosphoribosyl)- 73.3 18 0.00038 33.9 8.2 69 288-375 35-106 (233)
364 TIGR01286 nifK nitrogenase mol 73.2 1.4E+02 0.003 32.1 15.8 177 141-378 273-449 (515)
365 PRK07360 FO synthase subunit 2 73.0 17 0.00038 37.0 8.6 77 278-364 90-177 (371)
366 cd04734 OYE_like_3_FMN Old yel 72.9 20 0.00043 36.2 8.9 83 15-98 146-253 (343)
367 PRK04128 1-(5-phosphoribosyl)- 72.4 11 0.00023 36.0 6.5 43 322-376 64-106 (228)
368 PLN02446 (5-phosphoribosyl)-5- 72.4 83 0.0018 31.0 12.7 116 223-353 95-227 (262)
369 PF00724 Oxidored_FMN: NADH:fl 72.4 56 0.0012 32.8 12.0 127 224-353 154-311 (341)
370 TIGR01919 hisA-trpF 1-(5-phosp 72.4 41 0.00089 32.4 10.6 59 285-352 151-212 (243)
371 TIGR00735 hisF imidazoleglycer 72.3 19 0.00041 34.6 8.3 71 286-375 33-106 (254)
372 COG0646 MetH Methionine syntha 72.0 1.2E+02 0.0025 30.7 15.1 224 70-323 49-309 (311)
373 PRK15452 putative protease; Pr 71.9 56 0.0012 34.4 12.2 122 222-375 13-142 (443)
374 TIGR03849 arch_ComA phosphosul 71.8 27 0.00058 33.9 9.0 191 139-362 5-208 (237)
375 TIGR00742 yjbN tRNA dihydrouri 71.6 36 0.00079 34.1 10.4 82 13-94 70-161 (318)
376 PRK06256 biotin synthase; Vali 71.5 23 0.0005 35.2 9.0 12 145-156 33-44 (336)
377 COG0284 PyrF Orotidine-5'-phos 71.4 75 0.0016 30.8 12.1 185 26-261 36-234 (240)
378 PRK08508 biotin synthase; Prov 71.3 1.1E+02 0.0023 30.0 18.1 166 143-342 40-228 (279)
379 PRK11572 copper homeostasis pr 71.3 49 0.0011 32.3 10.8 18 224-241 13-30 (248)
380 cd03328 MR_like_3 Mandelate ra 71.1 1.2E+02 0.0026 30.6 17.5 161 191-381 117-280 (352)
381 PRK09856 fructoselysine 3-epim 71.0 57 0.0012 31.0 11.3 119 173-301 24-177 (275)
382 PTZ00170 D-ribulose-5-phosphat 70.8 42 0.00091 31.9 10.2 125 224-373 80-207 (228)
383 cd03321 mandelate_racemase Man 70.8 1.2E+02 0.0026 30.5 16.8 141 217-381 141-282 (355)
384 PRK07534 methionine synthase I 70.7 1.3E+02 0.0027 30.6 17.0 28 70-98 41-68 (336)
385 PF01081 Aldolase: KDPG and KH 70.7 44 0.00096 31.4 10.1 118 219-361 20-170 (196)
386 cd08209 RLP_DK-MTP-1-P-enolase 70.5 94 0.002 32.3 13.3 194 70-342 137-346 (391)
387 PRK07114 keto-hydroxyglutarate 70.1 1E+02 0.0023 29.4 14.1 181 10-264 27-216 (222)
388 PRK13585 1-(5-phosphoribosyl)- 70.0 22 0.00048 33.5 8.1 64 288-362 37-100 (241)
389 PRK10415 tRNA-dihydrouridine s 70.0 32 0.0007 34.4 9.6 76 14-91 81-166 (321)
390 cd02811 IDI-2_FMN Isopentenyl- 69.8 27 0.00058 35.1 9.0 134 220-365 65-207 (326)
391 PRK06843 inosine 5-monophospha 69.4 57 0.0012 34.1 11.4 120 176-306 145-288 (404)
392 TIGR02129 hisA_euk phosphoribo 69.4 7.9 0.00017 37.8 4.9 62 289-375 44-105 (253)
393 TIGR00973 leuA_bact 2-isopropy 69.4 1.6E+02 0.0035 31.4 20.8 138 209-361 135-276 (494)
394 KOG1436|consensus 69.3 11 0.00023 38.3 5.8 37 321-362 319-355 (398)
395 PRK09989 hypothetical protein; 69.2 64 0.0014 30.6 11.2 118 173-302 26-175 (258)
396 PRK15108 biotin synthase; Prov 69.2 1.3E+02 0.0027 30.6 13.7 127 7-156 76-210 (345)
397 PF00977 His_biosynth: Histidi 68.9 45 0.00097 31.6 9.9 118 222-361 85-214 (229)
398 PRK05481 lipoyl synthase; Prov 68.8 26 0.00057 34.6 8.6 145 205-361 67-225 (289)
399 cd04723 HisA_HisF Phosphoribos 68.5 14 0.00031 35.1 6.4 79 288-385 40-121 (233)
400 PRK05096 guanosine 5'-monophos 68.4 68 0.0015 32.8 11.4 82 269-373 96-180 (346)
401 PRK05581 ribulose-phosphate 3- 68.1 99 0.0021 28.4 13.1 112 225-363 77-194 (220)
402 cd00951 KDGDH 5-dehydro-4-deox 68.1 1.2E+02 0.0027 29.6 17.0 146 200-353 2-171 (289)
403 TIGR01182 eda Entner-Doudoroff 67.5 63 0.0014 30.5 10.4 67 281-364 18-84 (204)
404 TIGR01859 fruc_bis_ald_ fructo 67.1 1.3E+02 0.0029 29.6 13.6 126 210-362 80-225 (282)
405 PRK05718 keto-hydroxyglutarate 67.0 23 0.0005 33.6 7.4 72 281-369 25-97 (212)
406 TIGR00284 dihydropteroate synt 66.9 1.6E+02 0.0035 31.6 14.5 140 129-306 97-238 (499)
407 PRK13209 L-xylulose 5-phosphat 66.7 1E+02 0.0022 29.4 12.1 129 224-353 26-175 (283)
408 PF00290 Trp_syntA: Tryptophan 66.6 66 0.0014 31.5 10.7 127 225-382 108-235 (259)
409 PRK06096 molybdenum transport 66.6 17 0.00036 36.2 6.6 77 13-110 199-276 (284)
410 PF09370 TIM-br_sig_trns: TIM- 66.0 31 0.00067 34.0 8.2 177 80-288 28-233 (268)
411 cd04725 OMP_decarboxylase_like 65.7 1.2E+02 0.0026 28.4 12.2 156 61-254 50-213 (216)
412 cd02931 ER_like_FMN Enoate red 65.5 40 0.00086 34.6 9.4 79 287-366 154-271 (382)
413 cd04735 OYE_like_4_FMN Old yel 65.5 45 0.00097 33.8 9.7 82 15-97 149-258 (353)
414 PRK10605 N-ethylmaleimide redu 65.2 1.1E+02 0.0024 31.2 12.5 135 78-250 163-330 (362)
415 PLN03228 methylthioalkylmalate 65.1 71 0.0015 34.3 11.4 141 223-375 168-326 (503)
416 TIGR03700 mena_SCO4494 putativ 65.0 1.6E+02 0.0035 29.7 15.2 47 216-264 79-125 (351)
417 TIGR00433 bioB biotin syntheta 64.9 95 0.0021 30.0 11.6 77 8-93 63-139 (296)
418 PF09505 Dimeth_Pyl: Dimethyla 64.8 15 0.00033 37.3 5.9 86 224-313 271-367 (466)
419 cd04742 NPD_FabD 2-Nitropropan 64.8 31 0.00067 36.2 8.5 68 290-364 170-245 (418)
420 TIGR00874 talAB transaldolase. 64.6 1.7E+02 0.0036 29.7 15.2 124 215-362 100-238 (317)
421 TIGR01302 IMP_dehydrog inosine 64.4 30 0.00064 36.4 8.4 71 12-96 225-295 (450)
422 PRK13587 1-(5-phosphoribosyl)- 64.4 20 0.00043 34.3 6.6 69 288-375 36-108 (234)
423 COG0106 HisA Phosphoribosylfor 63.7 13 0.00028 36.1 5.1 67 290-375 38-107 (241)
424 TIGR01235 pyruv_carbox pyruvat 63.7 1.7E+02 0.0037 34.8 15.0 145 143-312 622-773 (1143)
425 PLN02898 HMP-P kinase/thiamin- 63.6 1.3E+02 0.0028 32.0 13.1 132 224-377 312-478 (502)
426 COG1304 idi Isopentenyl diphos 63.6 17 0.00036 37.4 6.2 90 251-362 204-297 (360)
427 PRK13753 dihydropteroate synth 63.5 51 0.0011 32.7 9.4 89 210-307 14-107 (279)
428 PF09043 Lys-AminoMut_A: D-Lys 63.5 24 0.00052 37.1 7.2 80 269-351 148-245 (509)
429 COG0329 DapA Dihydrodipicolina 63.3 1.6E+02 0.0035 29.2 15.4 146 201-353 7-178 (299)
430 TIGR02631 xylA_Arthro xylose i 63.3 1.9E+02 0.0041 29.9 14.1 137 212-353 23-202 (382)
431 cd00739 DHPS DHPS subgroup of 62.9 67 0.0015 31.2 10.0 87 210-307 13-107 (257)
432 PLN02411 12-oxophytodienoate r 62.8 1.6E+02 0.0035 30.4 13.2 128 223-353 169-332 (391)
433 PRK11613 folP dihydropteroate 62.7 43 0.00094 33.2 8.7 88 2-97 28-120 (282)
434 cd04747 OYE_like_5_FMN Old yel 62.6 56 0.0012 33.5 9.8 81 15-96 149-257 (361)
435 PRK14041 oxaloacetate decarbox 62.5 2.2E+02 0.0047 30.4 20.4 134 217-372 93-233 (467)
436 PRK07455 keto-hydroxyglutarate 62.5 61 0.0013 29.8 9.2 108 217-364 22-129 (187)
437 TIGR00734 hisAF_rel hisA/hisF 62.5 31 0.00067 32.7 7.4 55 294-362 152-208 (221)
438 PLN02321 2-isopropylmalate syn 62.2 2.1E+02 0.0045 31.8 14.5 140 216-363 105-256 (632)
439 PRK13125 trpA tryptophan synth 62.1 70 0.0015 30.6 9.9 194 67-306 12-217 (244)
440 PRK15452 putative protease; Pr 62.1 47 0.001 35.0 9.4 133 13-155 13-156 (443)
441 PRK14114 1-(5-phosphoribosyl)- 62.1 13 0.00029 35.7 4.9 67 289-375 36-105 (241)
442 cd00408 DHDPS-like Dihydrodipi 61.7 1.6E+02 0.0034 28.4 13.6 135 212-353 11-171 (281)
443 PLN02433 uroporphyrinogen deca 61.4 1.2E+02 0.0026 30.5 11.8 46 280-326 289-337 (345)
444 TIGR00875 fsa_talC_mipB fructo 61.2 1.5E+02 0.0033 28.1 12.8 179 61-301 1-183 (213)
445 TIGR00674 dapA dihydrodipicoli 61.2 1.2E+02 0.0025 29.6 11.4 91 212-305 12-102 (285)
446 PRK02083 imidazole glycerol ph 61.1 36 0.00078 32.5 7.7 60 288-362 35-98 (253)
447 PRK08673 3-deoxy-7-phosphohept 61.0 2E+02 0.0043 29.3 18.1 231 60-332 93-334 (335)
448 PRK06015 keto-hydroxyglutarate 60.9 48 0.001 31.3 8.3 71 281-368 14-85 (201)
449 PF04481 DUF561: Protein of un 60.9 63 0.0014 31.2 9.0 82 14-99 72-157 (242)
450 TIGR01306 GMP_reduct_2 guanosi 60.7 1.1E+02 0.0023 31.1 11.2 77 269-364 82-162 (321)
451 COG0157 NadC Nicotinate-nucleo 60.6 38 0.00083 33.6 7.8 78 13-110 198-275 (280)
452 TIGR02814 pfaD_fam PfaD family 60.3 39 0.00084 35.8 8.3 84 269-364 159-250 (444)
453 PF01207 Dus: Dihydrouridine s 59.9 44 0.00095 33.3 8.3 78 12-91 67-155 (309)
454 cd00405 PRAI Phosphoribosylant 59.3 29 0.00063 32.0 6.5 70 222-303 9-80 (203)
455 cd00740 MeTr MeTr subgroup of 59.2 50 0.0011 32.0 8.4 79 218-307 25-103 (252)
456 TIGR00587 nfo apurinic endonuc 59.0 1.8E+02 0.0038 28.2 13.6 131 222-353 14-164 (274)
457 COG0352 ThiE Thiamine monophos 58.7 1.3E+02 0.0029 28.5 10.9 105 222-364 24-128 (211)
458 PRK06106 nicotinate-nucleotide 58.7 43 0.00094 33.2 7.9 75 13-110 204-279 (281)
459 PLN02489 homocysteine S-methyl 58.7 73 0.0016 32.2 9.7 52 278-330 50-109 (335)
460 PLN02446 (5-phosphoribosyl)-5- 58.6 20 0.00043 35.3 5.5 65 289-376 49-115 (262)
461 cd07947 DRE_TIM_Re_CS Clostrid 58.4 1.9E+02 0.0042 28.4 15.3 129 217-362 19-164 (279)
462 PTZ00095 40S ribosomal protein 58.4 18 0.00038 33.4 4.7 72 297-387 56-132 (169)
463 PRK04147 N-acetylneuraminate l 58.3 1.9E+02 0.0041 28.3 13.7 131 140-305 18-168 (293)
464 cd00954 NAL N-Acetylneuraminic 57.9 1.9E+02 0.0041 28.2 14.5 97 202-302 4-102 (288)
465 cd00408 DHDPS-like Dihydrodipi 57.8 1.1E+02 0.0023 29.6 10.4 130 4-153 12-149 (281)
466 PRK13111 trpA tryptophan synth 57.6 1.9E+02 0.0041 28.2 13.4 200 65-306 18-231 (258)
467 cd03329 MR_like_4 Mandelate ra 57.6 2.2E+02 0.0047 28.8 19.4 158 200-382 124-287 (368)
468 TIGR01305 GMP_reduct_1 guanosi 57.5 2.3E+02 0.005 29.1 14.2 75 223-303 162-241 (343)
469 TIGR00683 nanA N-acetylneurami 57.4 1.8E+02 0.0038 28.6 12.0 100 202-305 4-105 (290)
470 cd02809 alpha_hydroxyacid_oxid 57.3 1E+02 0.0022 30.4 10.3 71 281-364 127-197 (299)
471 TIGR01919 hisA-trpF 1-(5-phosp 57.3 22 0.00047 34.3 5.4 34 322-362 65-98 (243)
472 PRK05926 hypothetical protein; 57.1 48 0.001 34.0 8.2 129 216-361 99-250 (370)
473 TIGR03249 KdgD 5-dehydro-4-deo 56.9 2E+02 0.0044 28.2 19.4 162 143-361 23-203 (296)
474 PRK05848 nicotinate-nucleotide 56.7 44 0.00095 33.0 7.5 78 13-110 192-270 (273)
475 COG1060 ThiH Thiamine biosynth 56.6 2.4E+02 0.0053 29.0 14.8 207 144-374 34-303 (370)
476 cd04729 NanE N-acetylmannosami 56.3 66 0.0014 30.0 8.5 71 14-97 83-154 (219)
477 cd02911 arch_FMN Archeal FMN-b 56.1 80 0.0017 30.2 9.1 78 15-98 89-176 (233)
478 PRK09875 putative hydrolase; P 56.1 51 0.0011 32.7 8.0 83 248-336 31-122 (292)
479 cd03316 MR_like Mandelate race 56.0 59 0.0013 32.5 8.6 81 281-365 139-221 (357)
480 COG0502 BioB Biotin synthase a 55.8 38 0.00082 34.5 7.1 76 278-364 82-158 (335)
481 PRK12999 pyruvate carboxylase; 55.5 4.2E+02 0.0092 31.5 19.6 214 121-375 521-774 (1146)
482 PRK14847 hypothetical protein; 55.3 2.5E+02 0.0053 28.7 16.0 140 215-362 50-203 (333)
483 PRK09485 mmuM homocysteine met 55.0 31 0.00067 34.2 6.3 63 279-342 42-114 (304)
484 PLN02274 inosine-5'-monophosph 54.9 59 0.0013 34.9 8.7 73 13-99 250-322 (505)
485 PRK08745 ribulose-phosphate 3- 54.8 43 0.00094 32.0 7.0 155 178-373 45-205 (223)
486 cd03326 MR_like_1 Mandelate ra 54.8 2.6E+02 0.0056 28.8 16.5 152 201-381 145-305 (385)
487 TIGR02313 HpaI-NOT-DapA 2,4-di 54.8 2E+02 0.0043 28.3 11.9 99 202-304 4-103 (294)
488 PRK05458 guanosine 5'-monophos 54.6 67 0.0015 32.5 8.7 72 10-96 96-170 (326)
489 PRK12346 transaldolase A; Prov 54.6 2.5E+02 0.0053 28.5 15.9 124 215-362 101-239 (316)
490 PRK09016 quinolinate phosphori 54.6 57 0.0012 32.6 8.0 75 13-110 218-293 (296)
491 COG0042 tRNA-dihydrouridine sy 54.3 1.1E+02 0.0025 30.7 10.3 82 7-91 76-169 (323)
492 cd00739 DHPS DHPS subgroup of 54.0 1E+02 0.0022 30.0 9.5 79 8-97 22-106 (257)
493 PRK07534 methionine synthase I 53.9 30 0.00065 35.1 6.1 63 279-342 41-111 (336)
494 PLN02363 phosphoribosylanthran 53.9 30 0.00064 33.8 5.8 79 202-302 49-128 (256)
495 PLN02417 dihydrodipicolinate s 53.7 2.2E+02 0.0048 27.7 14.8 102 201-306 4-106 (280)
496 PRK09856 fructoselysine 3-epim 53.7 2E+02 0.0044 27.2 14.3 128 223-353 17-169 (275)
497 COG4948 L-alanine-DL-glutamate 53.1 2.6E+02 0.0056 28.3 17.1 141 215-380 141-283 (372)
498 cd00952 CHBPH_aldolase Trans-o 53.0 2E+02 0.0044 28.5 11.7 88 214-304 24-111 (309)
499 PRK08645 bifunctional homocyst 52.9 71 0.0015 35.0 9.1 76 275-353 35-128 (612)
500 PRK06552 keto-hydroxyglutarate 52.4 1.6E+02 0.0034 27.9 10.3 73 281-368 23-97 (213)
No 1
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=100.00 E-value=1.4e-75 Score=559.45 Aligned_cols=241 Identities=38% Similarity=0.556 Sum_probs=224.1
Q ss_pred HHHHHhhcccccccCCCCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccC--CCeEEEEECCccHHHHHHHhhhcCCCC-C
Q psy10250 125 SLLLKIIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQAN--VHTAAVCVYPARVVDVIKVLDRENARD-D 201 (387)
Q Consensus 125 ~~~~~l~~~ID~T~L~~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~--~~~~aVcV~P~~v~~a~~~L~~~~~~~-~ 201 (387)
.+.++++++||||+|+|++|+++|+++|++|+ + |+|++|||||+||+++++.|++. ++ +
T Consensus 5 ~~~~~~~~~ID~TlL~p~~T~~~I~~lc~eA~----------------~~~~~faaVcV~P~~v~~a~~~L~~~--~~~~ 66 (257)
T PRK05283 5 AAALRALSLMDLTTLNDDDTDEKVIALCHQAK----------------TPVGNTAAICIYPRFIPIARKTLREQ--GTPE 66 (257)
T ss_pred HHHHHHHHHhcccCCCCCCCHHHHHHHHHHHH----------------hcCCCeeEEEECHHHHHHHHHHhccc--CCCC
Confidence 35789999999999999999999999999999 5 79999999999999999999742 24 6
Q ss_pred ceEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCC
Q psy10250 202 VKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKT 281 (387)
Q Consensus 202 v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t 281 (387)
++|||| ||||+|++++++|++|+++|+++||||||||+|++++++|+|++|++||++|+++|+++.++||||||++|++
T Consensus 67 vkv~tV-igFP~G~~~t~~K~~Ea~~Ai~~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ 145 (257)
T PRK05283 67 IRIATV-TNFPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKD 145 (257)
T ss_pred CeEEEE-ecCCCCCCcHHHHHHHHHHHHHcCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCC
Confidence 999999 6999999999999999999999999999999999999999999999999999999984489999999999955
Q ss_pred hHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCC
Q psy10250 282 SENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGP 361 (387)
Q Consensus 282 ~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga 361 (387)
+|+|++||++|+++|||||||||||++.|||++++++|++.++.+ ..++++||||||||||++||+.|+.+.++.+|+
T Consensus 146 ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~--~~~~~vgIKAsGGIrt~~~A~~~i~ag~~~lg~ 223 (257)
T PRK05283 146 EALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDM--GVAKTVGFKPAGGVRTAEDAAQYLALADEILGA 223 (257)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhc--ccCCCeeEEccCCCCCHHHHHHHHHHHHHHhCh
Confidence 446999999999999999999999999999999888888777654 246889999999999999999999999999999
Q ss_pred CccCCCcceeeccchHHHHHHHHhh
Q psy10250 362 DWLNKDLFRIGASSLLNNILQELEA 386 (387)
Q Consensus 362 ~w~~~~~~RIGtSs~~~il~~~~~~ 386 (387)
+|++|++||||+||+++++.++|+.
T Consensus 224 ~~~~~~~fR~G~Ssll~~~~~~~~~ 248 (257)
T PRK05283 224 DWADARHFRFGASSLLASLLKTLGH 248 (257)
T ss_pred hhcCcccEeeehHHhHHHHHHHHhc
Confidence 9999999999999999999998853
No 2
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.6e-73 Score=527.09 Aligned_cols=216 Identities=33% Similarity=0.455 Sum_probs=203.1
Q ss_pred HHhhcccccccCCCCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEE
Q psy10250 128 LKIIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASV 207 (387)
Q Consensus 128 ~~l~~~ID~T~L~~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tV 207 (387)
.+++++||||+|+|++|+++|.+||++|. +|+|++|||||+||++|++.|+++ ..++||||
T Consensus 6 ~~~~~~IDhT~Lk~~~T~~~I~~l~~eA~----------------~~~f~avCV~P~~V~~A~~~l~g~---~~~~v~tV 66 (228)
T COG0274 6 MQLAKLIDHTLLKPDATEEDIARLCAEAK----------------EYGFAAVCVNPSYVPLAKEALKGS---TVVRVCTV 66 (228)
T ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHH----------------hhCceEEEECcchHHHHHHHhccC---CCeEEEEe
Confidence 78899999999999999999999999999 899999999999999999999963 36679999
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHH
Q psy10250 208 AAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYC 287 (387)
Q Consensus 208 vigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~ 287 (387)
+|||+|.+++++|++|++.|+++||||||||||++++|+|+|++|++||++|+++|++..+|||||||++| +++++++
T Consensus 67 -igFP~G~~~t~~K~~Ea~~ai~~GAdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~L-t~ee~~~ 144 (228)
T COG0274 67 -IGFPLGANTTAVKAAEAREAIENGADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLL-TDEEKRK 144 (228)
T ss_pred -cCCCCCCChHHHHHHHHHHHHHcCCCeeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEecccc-CHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999874599999999999 6788999
Q ss_pred HHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCC
Q psy10250 288 ASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKD 367 (387)
Q Consensus 288 a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~ 367 (387)
||++|+++|||||||||||.++|||+| +|++|++..|+++||||||||||++||..|+ ++|+
T Consensus 145 A~~i~~~aGAdFVKTSTGf~~~gAT~e-------dv~lM~~~vg~~vgvKaSGGIrt~eda~~~i-----~aga------ 206 (228)
T COG0274 145 ACEIAIEAGADFVKTSTGFSAGGATVE-------DVKLMKETVGGRVGVKASGGIRTAEDAKAMI-----EAGA------ 206 (228)
T ss_pred HHHHHHHhCCCEEEcCCCCCCCCCCHH-------HHHHHHHHhccCceeeccCCcCCHHHHHHHH-----HHhH------
Confidence 999999999999999999999999997 5666677789999999999999999999999 5887
Q ss_pred cceeeccchHHHHHHH
Q psy10250 368 LFRIGASSLLNNILQE 383 (387)
Q Consensus 368 ~~RIGtSs~~~il~~~ 383 (387)
+||||||+++|+++.
T Consensus 207 -~RiGtSs~v~i~~~~ 221 (228)
T COG0274 207 -TRIGTSSGVAILEGL 221 (228)
T ss_pred -HHhccccHHHHHHhc
Confidence 899999999777653
No 3
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=100.00 E-value=7.3e-66 Score=482.13 Aligned_cols=209 Identities=34% Similarity=0.495 Sum_probs=198.3
Q ss_pred hhcccccccCCCCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEec
Q psy10250 130 IIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAA 209 (387)
Q Consensus 130 l~~~ID~T~L~~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvi 209 (387)
++++||||+|+|++|+++|+++|++|+ +|+|++|||||+||+++++.|++ ++++|||| |
T Consensus 2 l~~~ID~t~L~p~~t~~~i~~lc~~A~----------------~~~~~avcv~p~~v~~a~~~l~~----~~v~v~tV-i 60 (211)
T TIGR00126 2 LAKLIDHTALKADTTEEDIITLCAQAK----------------TYKFAAVCVNPSYVPLAKELLKG----TEVRICTV-V 60 (211)
T ss_pred hhHheeccCCCCCCCHHHHHHHHHHHH----------------hhCCcEEEeCHHHHHHHHHHcCC----CCCeEEEE-e
Confidence 689999999999999999999999999 89999999999999999999984 79999999 6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHH
Q psy10250 210 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCAS 289 (387)
Q Consensus 210 gFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~ 289 (387)
|||+|++++++|++|+++|+++||||||||+|++++++|+|+++++||++|+++|++ .++|||||+++| ++++|.+||
T Consensus 61 gFP~G~~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g-~~lKvIlE~~~L-~~~ei~~a~ 138 (211)
T TIGR00126 61 GFPLGASTTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAG-VLLKVIIETGLL-TDEEIRKAC 138 (211)
T ss_pred CCCCCCCcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCC-CeEEEEEecCCC-CHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999985 899999999999 678999999
Q ss_pred HHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcc
Q psy10250 290 MTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLF 369 (387)
Q Consensus 290 ~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~ 369 (387)
++|+++|||||||||||+++|||++ ++++|++..+++++||+||||||++|++.|+ .+|+ +
T Consensus 139 ~ia~eaGADfvKTsTGf~~~gat~~-------dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i-----~aGa-------~ 199 (211)
T TIGR00126 139 EICIDAGADFVKTSTGFGAGGATVE-------DVRLMRNTVGDTIGVKASGGVRTAEDAIAMI-----EAGA-------S 199 (211)
T ss_pred HHHHHhCCCEEEeCCCCCCCCCCHH-------HHHHHHHHhccCCeEEEeCCCCCHHHHHHHH-----HHhh-------H
Confidence 9999999999999999999999997 5556666777899999999999999999999 5898 7
Q ss_pred eeeccchHHHH
Q psy10250 370 RIGASSLLNNI 380 (387)
Q Consensus 370 RIGtSs~~~il 380 (387)
|||||++.+|+
T Consensus 200 riGts~~~~i~ 210 (211)
T TIGR00126 200 RIGASAGVAII 210 (211)
T ss_pred HhCcchHHHHh
Confidence 99999999987
No 4
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=100.00 E-value=6e-64 Score=472.45 Aligned_cols=213 Identities=31% Similarity=0.455 Sum_probs=202.1
Q ss_pred HHhhcccccccCCCCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEE
Q psy10250 128 LKIIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASV 207 (387)
Q Consensus 128 ~~l~~~ID~T~L~~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tV 207 (387)
.+++++||||+|+|++|+++|+++|++|+ +|+|++|||||+||+++++.|++ ++++||+|
T Consensus 4 ~~l~~~ID~T~L~p~~t~~~i~~~~~~A~----------------~~~~~avcv~p~~v~~a~~~l~~----~~v~v~tV 63 (221)
T PRK00507 4 MDIAKYIDHTLLKPEATEEDIDKLCDEAK----------------EYGFASVCVNPSYVKLAAELLKG----SDVKVCTV 63 (221)
T ss_pred HHHHhhhhhccCCCCCCHHHHHHHHHHHH----------------HhCCeEEEECHHHHHHHHHHhCC----CCCeEEEE
Confidence 36899999999999999999999999999 79999999999999999999984 78999999
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHH
Q psy10250 208 AAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYC 287 (387)
Q Consensus 208 vigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~ 287 (387)
||||+|.++++.|+.|+++|+++||+|||||+|++++++|+|+++++||++++++|++ .++|||||+++| ++++|.+
T Consensus 64 -igFP~G~~~~~~K~~e~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~-~~lKvIlEt~~L-~~e~i~~ 140 (221)
T PRK00507 64 -IGFPLGANTTAVKAFEAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGG-AVLKVIIETCLL-TDEEKVK 140 (221)
T ss_pred -ecccCCCChHHHHHHHHHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCC-ceEEEEeecCcC-CHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999865 799999999999 6899999
Q ss_pred HHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCC
Q psy10250 288 ASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKD 367 (387)
Q Consensus 288 a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~ 367 (387)
+|++|+++|+|||||||||+++|+|++ +|++|++..+++++||+||||||++||+.|+ .+|+
T Consensus 141 a~~~~~~agadfIKTsTG~~~~gat~~-------~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i-----~aGA------ 202 (221)
T PRK00507 141 ACEIAKEAGADFVKTSTGFSTGGATVE-------DVKLMRETVGPRVGVKASGGIRTLEDALAMI-----EAGA------ 202 (221)
T ss_pred HHHHHHHhCCCEEEcCCCCCCCCCCHH-------HHHHHHHHhCCCceEEeeCCcCCHHHHHHHH-----HcCc------
Confidence 999999999999999999999999996 5666677778999999999999999999999 5898
Q ss_pred cceeeccchHHHHHH
Q psy10250 368 LFRIGASSLLNNILQ 382 (387)
Q Consensus 368 ~~RIGtSs~~~il~~ 382 (387)
+|||||++.+|+++
T Consensus 203 -~riGtS~~~~i~~~ 216 (221)
T PRK00507 203 -TRLGTSAGVAILKG 216 (221)
T ss_pred -ceEccCcHHHHHhc
Confidence 79999999999975
No 5
>KOG3981|consensus
Probab=100.00 E-value=1e-62 Score=457.90 Aligned_cols=279 Identities=51% Similarity=0.823 Sum_probs=265.4
Q ss_pred CCcccccchhccccchh---------------h--hhhHHHHHHhhcccccccCCCCCCHHHHHHHHHHhcCCCcHHHHH
Q psy10250 103 TIPADLTRQFEAVDLSR---------------L--KNKKSLLLKIIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKE 165 (387)
Q Consensus 103 t~~~~~~~~~~~~~~~~---------------~--~~~~~~~~~l~~~ID~T~L~~~~T~~~i~~l~~~A~~~~~~~~~~ 165 (387)
+.++|++| ++....+. | +++.+|..+.+.+||+|.|+.|+|...|.+||.+|.+|+.+++++
T Consensus 15 ~~~~D~s~-~~k~~~~~~~v~eiA~~is~r~~v~k~~~~aw~lrai~~iDLTTL~GDDTasnv~rLc~rA~yP~~p~~~~ 93 (326)
T KOG3981|consen 15 KGRFDVST-FEKEVGRDFDVQEIAQAISKREQVAKNLRNAWELRAIQYIDLTTLNGDDTASNVVRLCKRAIYPVEPQFFD 93 (326)
T ss_pred CCccCHHH-HHHHhccchhHHHHHHHHHHHHHHHHhhHHHHHHHHhHhheeeeecCCccHHHHHHHHHHhcCCCCHHHHH
Confidence 45778887 65544432 3 789999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhh
Q psy10250 166 KVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLV 245 (387)
Q Consensus 166 ~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~l 245 (387)
++-++++..++++|||||..|..+++.|+.+ +.++.|++|+.|||.|+.++.+|+.|++.|+.+||+|||+|||++..
T Consensus 94 ~~~~~dp~ihtaaVCVYPaRv~Da~kal~~~--~~n~~iasVA~GFPsGQyhLktrl~Ei~lav~dGATEIDiVInR~la 171 (326)
T KOG3981|consen 94 KFFATDPSIHTAAVCVYPARVADAKKALASS--KLNSNIASVAGGFPSGQYHLKTRLLEIELAVADGATEIDIVINRALA 171 (326)
T ss_pred HHhccCCccceeeEEeehHHHHHHHHHHHhc--cCCcchHHHhcCCCCcchHHHHHHHHHHHHHhcCCceEEEEeehhhh
Confidence 9999999999999999999999999999876 46888999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHH
Q psy10250 246 LNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKH 325 (387)
Q Consensus 246 k~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~ 325 (387)
+.|||+.+++|+.+++++|+. +++|.||-|++|.|..++++|+++||.||+||||||||+...+||++...+||.+|+.
T Consensus 172 L~gdWea~ydEv~~~rkACG~-AHLKTILAtGELgTl~NVYkAsm~~mmAGsDFIKTSTGKEtVNATlpVa~VM~~AI~~ 250 (326)
T KOG3981|consen 172 LDGDWEAVYDEVLACRKACGS-AHLKTILATGELGTLSNVYKASMASMMAGSDFIKTSTGKETVNATLPVAYVMCTAIKR 250 (326)
T ss_pred hcccHHHHHHHHHHHHHHhhH-HHHHHHhhhcccchhHHHHHHHHHHHHhcccceecCCcccccceechhHHHHHHHHHH
Confidence 999999999999999999996 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccchHHHHHHHHh
Q psy10250 326 FHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELE 385 (387)
Q Consensus 326 ~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~~~il~~~~~ 385 (387)
+++.++.++|+|++|||||.++++.|+.|+++.+|-+|++|..||||+|++++++++.+-
T Consensus 251 f~~~Tg~kvGfKPAGGiktv~dalaw~~LVke~LGdeWL~PelFRiGAS~LLdDier~~~ 310 (326)
T KOG3981|consen 251 FHELTGKKVGFKPAGGIKTVDDALAWVALVKEILGDEWLNPELFRIGASSLLDDIERGLR 310 (326)
T ss_pred HHHHhCCeeccccCCCcccHHHHHHHHHHHHHHhhhhhcCHHHhhcchHHhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998763
No 6
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=100.00 E-value=5.5e-54 Score=399.29 Aligned_cols=203 Identities=37% Similarity=0.508 Sum_probs=190.6
Q ss_pred hhcccccccCCCCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEec
Q psy10250 130 IIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAA 209 (387)
Q Consensus 130 l~~~ID~T~L~~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvi 209 (387)
++++||||+|+|+.|.++|+++|++++ +|+|++|||+|.|++.+++.+.+ ++++++++ +
T Consensus 1 ~~~~iDht~l~p~~t~~~i~~~~~~a~----------------~~~~~av~v~p~~v~~~~~~l~~----~~~~v~~~-~ 59 (203)
T cd00959 1 LASLIDHTLLKPDATEEDIRKLCDEAK----------------EYGFAAVCVNPCFVPLAREALKG----SGVKVCTV-I 59 (203)
T ss_pred CccceeeccCCCCCCHHHHHHHHHHHH----------------HcCCCEEEEcHHHHHHHHHHcCC----CCcEEEEE-E
Confidence 478999999999999999999999999 79999999999999999999974 68999999 6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHH
Q psy10250 210 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCAS 289 (387)
Q Consensus 210 gFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~ 289 (387)
|||+|+.+++.|+.|+++|+++||||||||+|++++++|+|+++.+||.+++++|++ .++|||+|+++| ++++|.++|
T Consensus 60 ~fp~g~~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g-~~lkvI~e~~~l-~~~~i~~a~ 137 (203)
T cd00959 60 GFPLGATTTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGG-APLKVILETGLL-TDEEIIKAC 137 (203)
T ss_pred ecCCCCCcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCC-CeEEEEEecCCC-CHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999984 899999999999 689999999
Q ss_pred HHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcc
Q psy10250 290 MTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLF 369 (387)
Q Consensus 290 ~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~ 369 (387)
++|+++|||||||||||.+.|+|+++++.| ++..+.+++||+||||||++|+++|+ .+|+ +
T Consensus 138 ria~e~GaD~IKTsTG~~~~~at~~~v~~~-------~~~~~~~v~ik~aGGikt~~~~l~~~-----~~g~-------~ 198 (203)
T cd00959 138 EIAIEAGADFIKTSTGFGPGGATVEDVKLM-------KEAVGGRVGVKAAGGIRTLEDALAMI-----EAGA-------T 198 (203)
T ss_pred HHHHHhCCCEEEcCCCCCCCCCCHHHHHHH-------HHHhCCCceEEEeCCCCCHHHHHHHH-----HhCh-------h
Confidence 999999999999999999999999865555 44555789999999999999999999 5898 7
Q ss_pred eeecc
Q psy10250 370 RIGAS 374 (387)
Q Consensus 370 RIGtS 374 (387)
|||+|
T Consensus 199 riG~s 203 (203)
T cd00959 199 RIGTS 203 (203)
T ss_pred hccCC
Confidence 99997
No 7
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=100.00 E-value=1.2e-44 Score=343.07 Aligned_cols=214 Identities=35% Similarity=0.418 Sum_probs=191.1
Q ss_pred hhcccccccCCCCCCHH-HHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEe
Q psy10250 130 IIEFIDLTTLSGDDTEA-VVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVA 208 (387)
Q Consensus 130 l~~~ID~T~L~~~~T~~-~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVv 208 (387)
++.+||||+|.++.|.. |++++|++++ +|+|.+||++|.|++.+++.+.+ +++++++|
T Consensus 2 ~~~~iDh~~l~~~~~~~~~~~~~~~~a~----------------~~~~~av~v~p~~~~~~~~~~~~----~~~~~~~v- 60 (236)
T PF01791_consen 2 LAVAIDHTLLHGPMTGEEDIKKLCREAI----------------EYGFDAVCVTPGYVKPAAELLAG----SGVKVGLV- 60 (236)
T ss_dssp EEEEEEEEHHHTTHHHHHHHHHHHHHHH----------------HHTSSEEEEEGGGHHHHHHHSTT----STSEEEEE-
T ss_pred eeeeecCCCcCCCCCchhhHHHHHHHHH----------------HhCCCEEEECHHHHHHHHHHhhc----cccccceE-
Confidence 57899999999999998 9999999999 78999999999999999999985 68899999
Q ss_pred cCCCCCCCCHHHH-----HHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChH
Q psy10250 209 AGFPSGQYLLETR-----LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSE 283 (387)
Q Consensus 209 igFP~G~~~~e~K-----~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e 283 (387)
++||+|+++++.| +.++++|+++||||||||+|++++++++|+++.+|++++++.|++ ..+||||| ++|.+++
T Consensus 61 i~fp~g~~~~~~k~~~~~~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~-~gl~vIlE-~~l~~~~ 138 (236)
T PF01791_consen 61 IGFPFGTSTTEPKGYDQIVAEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHK-YGLKVILE-PYLRGEE 138 (236)
T ss_dssp ESTTTSSSTHHHHTCEEEHHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHT-SEEEEEEE-ECECHHH
T ss_pred EEeCCCCCccccccccchHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhc-CCcEEEEE-EecCchh
Confidence 6999999999999 999999999999999999999999999999999999999999986 78999999 9995444
Q ss_pred --------HHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccC------CCHHHHH
Q psy10250 284 --------NIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGI------STFEDSV 349 (387)
Q Consensus 284 --------~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGI------rt~~~a~ 349 (387)
.|..||++++++||||||||||+. .++|++++..|.+.++.. ..++++|||+|||| |++++|.
T Consensus 139 ~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~-~~~t~~~~~~~~~~~~~~--~~p~~~~Vk~sGGi~~~~~~~~l~~a~ 215 (236)
T PF01791_consen 139 VADEKKPDLIARAARIAAELGADFVKTSTGKP-VGATPEDVELMRKAVEAA--PVPGKVGVKASGGIDAEDFLRTLEDAL 215 (236)
T ss_dssp BSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS-SCSHHHHHHHHHHHHHTH--SSTTTSEEEEESSSSHHHHHHSHHHHH
T ss_pred hcccccHHHHHHHHHHHHHhCCCEEEecCCcc-ccccHHHHHHHHHHHHhc--CCCcceEEEEeCCCChHHHHHHHHHHH
Confidence 389999999999999999999987 999998666655444321 12389999999999 9999999
Q ss_pred HHHHHHHHhcCCCccCCCcceeeccchHHHHH
Q psy10250 350 RWIYLVLIMLGPDWLNKDLFRIGASSLLNNIL 381 (387)
Q Consensus 350 ~~i~l~~~~~Ga~w~~~~~~RIGtSs~~~il~ 381 (387)
+|+ ++|+ +|+|+|++.+|.+
T Consensus 216 ~~i-----~aGa-------~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 216 EFI-----EAGA-------DRIGTSSGRNIWQ 235 (236)
T ss_dssp HHH-----HTTH-------SEEEEEEHHHHHT
T ss_pred HHH-----HcCC-------hhHHHHHHHHHHc
Confidence 999 5898 7999999999875
No 8
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=100.00 E-value=5e-36 Score=279.91 Aligned_cols=113 Identities=32% Similarity=0.446 Sum_probs=107.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHcccCccEEEEEeccCCCCHHHHHHHH
Q psy10250 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGELKTSENIYYAS 80 (387)
Q Consensus 1 gFP~G~~~~~~K~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~~~e~i~~a~ 80 (387)
|||+|.+++++|++|+++|+++||||||||||++++|+|+|++|++||++|+++|++..++|||||||+| +++++++||
T Consensus 68 gFP~G~~~t~~K~~Ea~~ai~~GAdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~L-t~ee~~~A~ 146 (228)
T COG0274 68 GFPLGANTTAVKAAEAREAIENGADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLL-TDEEKRKAC 146 (228)
T ss_pred CCCCCCChHHHHHHHHHHHHHcCCCeeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEecccc-CHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999875689999999999 788899999
Q ss_pred HHHHHcCCCEEecCCCCCCCCCCCcccccchhccc
Q psy10250 81 MTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAV 115 (387)
Q Consensus 81 ~~a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~ 115 (387)
++|+++|+|||||||||+++|||+++...| .+++
T Consensus 147 ~i~~~aGAdFVKTSTGf~~~gAT~edv~lM-~~~v 180 (228)
T COG0274 147 EIAIEAGADFVKTSTGFSAGGATVEDVKLM-KETV 180 (228)
T ss_pred HHHHHhCCCEEEcCCCCCCCCCCHHHHHHH-HHHh
Confidence 999999999999999999999999988888 5553
No 9
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=100.00 E-value=1.1e-34 Score=277.86 Aligned_cols=110 Identities=37% Similarity=0.450 Sum_probs=103.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHcccCccEEEEEeccCCCCHHHHHHHH
Q psy10250 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGELKTSENIYYAS 80 (387)
Q Consensus 1 gFP~G~~~~~~K~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~~~e~i~~a~ 80 (387)
|||+|++++++|++|+++|+++||||||||+|++++|+|+|+++++||++|+++|+++.++|||||||+|+++++|+++|
T Consensus 74 gFP~G~~~t~~K~~Ea~~Ai~~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~ 153 (257)
T PRK05283 74 NFPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKAS 153 (257)
T ss_pred cCCCCCCcHHHHHHHHHHHHHcCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999997447899999999995544699999
Q ss_pred HHHHHcCCCEEecCCCCCCCCCCCcccccc
Q psy10250 81 MTAMFAGSDFIKTSTGKEKTNATIPADLTR 110 (387)
Q Consensus 81 ~~a~~ag~dfvKTSTG~~~~gat~~~~~~~ 110 (387)
++|+++|||||||||||+++|||+++...|
T Consensus 154 ~~a~~aGADFVKTSTGf~~~gAt~edv~lm 183 (257)
T PRK05283 154 EIAIKAGADFIKTSTGKVPVNATLEAARIM 183 (257)
T ss_pred HHHHHhCCCEEEcCCCCCCCCCCHHHHHHH
Confidence 999999999999999999999999977777
No 10
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=99.97 E-value=5.6e-32 Score=253.58 Aligned_cols=113 Identities=31% Similarity=0.422 Sum_probs=105.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHcccCccEEEEEeccCCCCHHHHHHHH
Q psy10250 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGELKTSENIYYAS 80 (387)
Q Consensus 1 gFP~G~~~~~~K~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~~~e~i~~a~ 80 (387)
|||+|++++++|++|+++|+++||||||||+|++++++|+|+++.+||++++++|+ +.++|||+|+++| ++++|.++|
T Consensus 61 gFP~G~~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~-g~~lKvIlE~~~L-~~~ei~~a~ 138 (211)
T TIGR00126 61 GFPLGASTTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACA-GVLLKVIIETGLL-TDEEIRKAC 138 (211)
T ss_pred CCCCCCCcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcC-CCeEEEEEecCCC-CHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999998 4799999999998 678899999
Q ss_pred HHHHHcCCCEEecCCCCCCCCCCCcccccchhcccc
Q psy10250 81 MTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVD 116 (387)
Q Consensus 81 ~~a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~ 116 (387)
++|+++|+|||||||||+++|||+++...| .+.++
T Consensus 139 ~ia~eaGADfvKTsTGf~~~gat~~dv~~m-~~~v~ 173 (211)
T TIGR00126 139 EICIDAGADFVKTSTGFGAGGATVEDVRLM-RNTVG 173 (211)
T ss_pred HHHHHhCCCEEEeCCCCCCCCCCHHHHHHH-HHHhc
Confidence 999999999999999999999999977776 44443
No 11
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=99.96 E-value=1.1e-29 Score=239.59 Aligned_cols=108 Identities=28% Similarity=0.354 Sum_probs=103.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHcccCccEEEEEeccCCCCHHHHHHHH
Q psy10250 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGELKTSENIYYAS 80 (387)
Q Consensus 1 gFP~G~~~~~~K~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~~~e~i~~a~ 80 (387)
|||+|.++++.|+.|+++|+++||+|||||+|++++++|+|+++++||++++++|++ .++|||||+++| +++++.++|
T Consensus 65 gFP~G~~~~~~K~~e~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~-~~lKvIlEt~~L-~~e~i~~a~ 142 (221)
T PRK00507 65 GFPLGANTTAVKAFEAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGG-AVLKVIIETCLL-TDEEKVKAC 142 (221)
T ss_pred cccCCCChHHHHHHHHHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCC-ceEEEEeecCcC-CHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999998864 689999999999 788999999
Q ss_pred HHHHHcCCCEEecCCCCCCCCCCCcccccc
Q psy10250 81 MTAMFAGSDFIKTSTGKEKTNATIPADLTR 110 (387)
Q Consensus 81 ~~a~~ag~dfvKTSTG~~~~gat~~~~~~~ 110 (387)
++|+++|+|||||||||+++|+|+++...|
T Consensus 143 ~~~~~agadfIKTsTG~~~~gat~~~v~~m 172 (221)
T PRK00507 143 EIAKEAGADFVKTSTGFSTGGATVEDVKLM 172 (221)
T ss_pred HHHHHhCCCEEEcCCCCCCCCCCHHHHHHH
Confidence 999999999999999999999999877776
No 12
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=99.96 E-value=6.1e-29 Score=240.38 Aligned_cols=199 Identities=16% Similarity=0.149 Sum_probs=161.3
Q ss_pred hhcccccccCC-CCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCc----eE
Q psy10250 130 IIEFIDLTTLS-GDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDV----KV 204 (387)
Q Consensus 130 l~~~ID~T~L~-~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v----~v 204 (387)
++=-+|||+|+ |+.+.+|++++|+++. +|+|.+||++|.|++.+++.+. +++ ++
T Consensus 22 ~~~a~Dh~~l~gp~~~~~d~~~~~~~a~----------------~~~~~av~v~~~~~~~~~~~~~-----~~~~l~~~i 80 (267)
T PRK07226 22 VIVPMDHGVSHGPIDGLVDIRDTVNKVA----------------EGGADAVLMHKGLARHGHRGYG-----RDVGLIVHL 80 (267)
T ss_pred EEEECCCccccCCCcCcCCHHHHHHHHH----------------hcCCCEEEeCHhHHhhhccccC-----CCCcEEEEE
Confidence 34468999996 9999999999999999 7899999999999999888773 345 44
Q ss_pred EEEecCC-CCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCC-CcceEEE-------Ee
Q psy10250 205 ASVAAGF-PSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGE-KIHMKTI-------LA 275 (387)
Q Consensus 205 ~tVvigF-P~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~-~~~lKvI-------lE 275 (387)
+++ ++| |.|.+ +.|+.++++|++.|||++||++|++.++ +.++.+|+++++++|+. +.++||| +|
T Consensus 81 ~~~-~~~~~~~~~--~~~~~~ve~A~~~Gad~v~~~~~~g~~~---~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e 154 (267)
T PRK07226 81 SAS-TSLSPDPND--KVLVGTVEEAIKLGADAVSVHVNVGSET---EAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIK 154 (267)
T ss_pred cCC-CCCCCCCCc--ceeeecHHHHHHcCCCEEEEEEecCChh---HHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccC
Confidence 434 356 66655 8899999999999999999999999665 77899999999999963 4799999 68
Q ss_pred eccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcC-CCceEeEeccCC--CHHHHHHHH
Q psy10250 276 VGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSG-KKIGLKPAGGIS--TFEDSVRWI 352 (387)
Q Consensus 276 t~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~-~~~gIKasGGIr--t~~~a~~~i 352 (387)
++ + +++++..+|++|.+.|||||||| |.+ . ++.|++... .+++||++|||+ |++++++++
T Consensus 155 ~~-~-~~~~i~~a~~~a~e~GAD~vKt~--~~~---~----------~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v 217 (267)
T PRK07226 155 NE-Y-DPEVVAHAARVAAELGADIVKTN--YTG---D----------PESFREVVEGCPVPVVIAGGPKTDTDREFLEMV 217 (267)
T ss_pred CC-c-cHHHHHHHHHHHHHHCCCEEeeC--CCC---C----------HHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHH
Confidence 88 5 57889999999999999999998 421 1 223333443 479999999999 999999998
Q ss_pred HHHHHhcCCCccCCCcceeeccchHHHHHH
Q psy10250 353 YLVLIMLGPDWLNKDLFRIGASSLLNNILQ 382 (387)
Q Consensus 353 ~l~~~~~Ga~w~~~~~~RIGtSs~~~il~~ 382 (387)
..+. ++|+ . |+|.+.+++.+
T Consensus 218 ~~~~-~aGA-------~--Gis~gr~i~~~ 237 (267)
T PRK07226 218 RDAM-EAGA-------A--GVAVGRNVFQH 237 (267)
T ss_pred HHHH-HcCC-------c--EEehhhhhhcC
Confidence 5433 3787 4 88888777643
No 13
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=99.95 E-value=2.5e-27 Score=227.80 Aligned_cols=201 Identities=15% Similarity=0.141 Sum_probs=162.9
Q ss_pred hhcccccccCC-CCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEe
Q psy10250 130 IIEFIDLTTLS-GDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVA 208 (387)
Q Consensus 130 l~~~ID~T~L~-~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVv 208 (387)
++=-||||+|+ |+.+.+|++++|+++. +|+|.+||++|.|++.+.+.. +++++++++
T Consensus 19 ~~~aiDh~~l~gp~~~~~~~~~~~~~a~----------------~~~~~~v~~~p~~~~~~~~~~-----~~~~~~~~~- 76 (258)
T TIGR01949 19 VIVPMDHGVSNGPIKGLVDIRKTVNEVA----------------EGGADAVLLHKGIVRRGHRGY-----GKDVGLIIH- 76 (258)
T ss_pred EEEECCCccccCCCCCcCCHHHHHHHHH----------------hcCCCEEEeCcchhhhccccc-----CCCCcEEEE-
Confidence 34579999999 9999999999999999 799999999999999987653 267889888
Q ss_pred c--CCCCCCCCHH-HHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCC-CcceEEEEe-----eccC
Q psy10250 209 A--GFPSGQYLLE-TRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGE-KIHMKTILA-----VGEL 279 (387)
Q Consensus 209 i--gFP~G~~~~e-~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~-~~~lKvIlE-----t~~L 279 (387)
+ +||+|..++. .++.++++|++.||++||++.|++. +++++.+ +++++++++|+. +.+++|+++ .+++
T Consensus 77 ~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g~--~~~~~~~-~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~ 153 (258)
T TIGR01949 77 LSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVNVGS--DTEWEQI-RDLGMIAEICDDWGVPLLAMMYPRGPHIDDR 153 (258)
T ss_pred EcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEecCC--chHHHHH-HHHHHHHHHHHHcCCCEEEEEeccCcccccc
Confidence 8 9999999977 8999999999999999999999885 4567776 799999999974 478999988 6776
Q ss_pred CChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCC--CHHHHHHHHHHHHH
Q psy10250 280 KTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGIS--TFEDSVRWIYLVLI 357 (387)
Q Consensus 280 ~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIr--t~~~a~~~i~l~~~ 357 (387)
+.+++.++++.+.++||||||||+. ..++ .++.+.+ ..++.|+++|||+ |++++++++..+.
T Consensus 154 -~~~~~~~~~~~a~~~GADyikt~~~-----~~~~-------~l~~~~~--~~~iPVva~GGi~~~~~~~~~~~i~~~~- 217 (258)
T TIGR01949 154 -DPELVAHAARLGAELGADIVKTPYT-----GDID-------SFRDVVK--GCPAPVVVAGGPKTNSDREFLQMIKDAM- 217 (258)
T ss_pred -cHHHHHHHHHHHHHHCCCEEeccCC-----CCHH-------HHHHHHH--hCCCcEEEecCCCCCCHHHHHHHHHHHH-
Confidence 5788989999999999999999842 1232 3333332 2468999999999 8888888874322
Q ss_pred hcCCCccCCCcceeeccchHHHH
Q psy10250 358 MLGPDWLNKDLFRIGASSLLNNI 380 (387)
Q Consensus 358 ~~Ga~w~~~~~~RIGtSs~~~il 380 (387)
.+|+ . |+|.+.+++
T Consensus 218 ~aGa-------~--Gia~g~~i~ 231 (258)
T TIGR01949 218 EAGA-------A--GVAVGRNIF 231 (258)
T ss_pred HcCC-------c--EEehhhHhh
Confidence 3787 4 666555544
No 14
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=99.95 E-value=2.2e-27 Score=220.80 Aligned_cols=113 Identities=35% Similarity=0.454 Sum_probs=106.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHcccCccEEEEEeccCCCCHHHHHHHH
Q psy10250 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGELKTSENIYYAS 80 (387)
Q Consensus 1 gFP~G~~~~~~K~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~~~e~i~~a~ 80 (387)
+||+|..+++.|+.|+++|+++||||+|+|+|++++++|+|+++.+||.+++++|+ +.++|||+|+++| ++++|.++|
T Consensus 60 ~fp~g~~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~-g~~lkvI~e~~~l-~~~~i~~a~ 137 (203)
T cd00959 60 GFPLGATTTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACG-GAPLKVILETGLL-TDEEIIKAC 137 (203)
T ss_pred ecCCCCCcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcC-CCeEEEEEecCCC-CHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999998 4899999999999 689999999
Q ss_pred HHHHHcCCCEEecCCCCCCCCCCCcccccchhcccc
Q psy10250 81 MTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVD 116 (387)
Q Consensus 81 ~~a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~ 116 (387)
++|+++|+|||||||||.++|+|+++...| .+.++
T Consensus 138 ria~e~GaD~IKTsTG~~~~~at~~~v~~~-~~~~~ 172 (203)
T cd00959 138 EIAIEAGADFIKTSTGFGPGGATVEDVKLM-KEAVG 172 (203)
T ss_pred HHHHHhCCCEEEcCCCCCCCCCCHHHHHHH-HHHhC
Confidence 999999999999999999999999976776 44544
No 15
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=99.90 E-value=5.3e-23 Score=194.37 Aligned_cols=187 Identities=13% Similarity=0.045 Sum_probs=151.4
Q ss_pred ccccccC---CCCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCC----ceEE
Q psy10250 133 FIDLTTL---SGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDD----VKVA 205 (387)
Q Consensus 133 ~ID~T~L---~~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~----v~v~ 205 (387)
-+||+++ +|+.|.++++++|+++. +|||.++||+|.|++.+.+.+.+ +.+ ++.+
T Consensus 5 ~~Dh~~~~~~~p~~~~~d~~~~~~~~~----------------~~g~~av~v~~~~~~~~~~~~~~---~~~~i~~~~~~ 65 (235)
T cd00958 5 AVDHGIEHGFGPNPGLEDPEETVKLAA----------------EGGADAVALTKGIARAYGREYAG---DIPLIVKLNGS 65 (235)
T ss_pred ecCCcccccCCCCccccCHHHHHHHHH----------------hcCCCEEEeChHHHHhcccccCC---CCcEEEEECCC
Confidence 4899999 89999999999999999 79999999999999999888843 123 3336
Q ss_pred EEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeecc-------
Q psy10250 206 SVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGE------- 278 (387)
Q Consensus 206 tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~------- 278 (387)
++ ++|| ..+++.++.++++|++.||+++|+++|++.+ +++++.+++++++++|++ ..+|+|+|...
T Consensus 66 ~~-i~~p--~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~---~~~~~~~~i~~v~~~~~~-~g~~~iie~~~~g~~~~~ 138 (235)
T cd00958 66 TS-LSPK--DDNDKVLVASVEDAVRLGADAVGVTVYVGSE---EEREMLEELARVAAEAHK-YGLPLIAWMYPRGPAVKN 138 (235)
T ss_pred CC-CCCC--CCCchhhhcCHHHHHHCCCCEEEEEEecCCc---hHHHHHHHHHHHHHHHHH-cCCCEEEEEeccCCcccC
Confidence 78 6999 8889999999999999999999999998855 478999999999999976 57899999966
Q ss_pred -CCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccC--CCHHHHHHHHHHH
Q psy10250 279 -LKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGI--STFEDSVRWIYLV 355 (387)
Q Consensus 279 -L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGI--rt~~~a~~~i~l~ 355 (387)
+ +.+++.++++++.++|||||||+ |. . .+ +.++.+.+. .++.|+++||| +|.+++++.+..+
T Consensus 139 ~~-~~~~i~~~~~~a~~~GaD~Ik~~--~~-~--~~-------~~~~~i~~~--~~~pvv~~GG~~~~~~~~~l~~~~~~ 203 (235)
T cd00958 139 EK-DPDLIAYAARIGAELGADIVKTK--YT-G--DA-------ESFKEVVEG--CPVPVVIAGGPKKDSEEEFLKMVYDA 203 (235)
T ss_pred cc-CHHHHHHHHHHHHHHCCCEEEec--CC-C--CH-------HHHHHHHhc--CCCCEEEeCCCCCCCHHHHHHHHHHH
Confidence 5 56889999999999999999995 31 1 23 234444443 34678999998 7887766554332
Q ss_pred HHhcCC
Q psy10250 356 LIMLGP 361 (387)
Q Consensus 356 ~~~~Ga 361 (387)
. ++|+
T Consensus 204 ~-~~Ga 208 (235)
T cd00958 204 M-EAGA 208 (235)
T ss_pred H-HcCC
Confidence 2 4787
No 16
>KOG3981|consensus
Probab=99.85 E-value=8e-22 Score=184.65 Aligned_cols=109 Identities=55% Similarity=0.861 Sum_probs=105.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHcccCccEEEEEeccCCCCHHHHHHHH
Q psy10250 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGELKTSENIYYAS 80 (387)
Q Consensus 1 gFP~G~~~~~~K~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~~~e~i~~a~ 80 (387)
|||.|+..+.+|+.|++.|+.+||.|||+|||....+.|+|+.+++|+..++++|+. ..+|.||-||.|-|-.+.++|+
T Consensus 136 GFPsGQyhLktrl~Ei~lav~dGATEIDiVInR~laL~gdWea~ydEv~~~rkACG~-AHLKTILAtGELgTl~NVYkAs 214 (326)
T KOG3981|consen 136 GFPSGQYHLKTRLLEIELAVADGATEIDIVINRALALDGDWEAVYDEVLACRKACGS-AHLKTILATGELGTLSNVYKAS 214 (326)
T ss_pred CCCCcchHHHHHHHHHHHHHhcCCceEEEEeehhhhhcccHHHHHHHHHHHHHHhhH-HHHHHHhhhcccchhHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999985 6899999999999999999999
Q ss_pred HHHHHcCCCEEecCCCCCCCCCCCcccccc
Q psy10250 81 MTAMFAGSDFIKTSTGKEKTNATIPADLTR 110 (387)
Q Consensus 81 ~~a~~ag~dfvKTSTG~~~~gat~~~~~~~ 110 (387)
.+++.||.||||||||+-..+||+|.-..|
T Consensus 215 m~~mmAGsDFIKTSTGKEtVNATlpVa~VM 244 (326)
T KOG3981|consen 215 MASMMAGSDFIKTSTGKETVNATLPVAYVM 244 (326)
T ss_pred HHHHHhcccceecCCcccccceechhHHHH
Confidence 999999999999999999999999977776
No 17
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=99.84 E-value=2.6e-21 Score=183.50 Aligned_cols=107 Identities=34% Similarity=0.408 Sum_probs=93.9
Q ss_pred CCCCCCCCHHHH-----HHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHcccCccEEEEEeccCCCCHH-
Q psy10250 1 GFPSGQYLLETR-----LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGELKTSE- 74 (387)
Q Consensus 1 gFP~G~~~~~~K-----~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~~~e- 74 (387)
+||+|.++++.| +.|+++|+++||||+|+|+|++++++++|+++.+|++++++.|++ ..+|+|+| ++|.+++
T Consensus 62 ~fp~g~~~~~~k~~~~~~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~-~gl~vIlE-~~l~~~~~ 139 (236)
T PF01791_consen 62 GFPFGTSTTEPKGYDQIVAEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHK-YGLKVILE-PYLRGEEV 139 (236)
T ss_dssp STTTSSSTHHHHTCEEEHHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHT-SEEEEEEE-ECECHHHB
T ss_pred EeCCCCCccccccccchHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhc-CCcEEEEE-EecCchhh
Confidence 699999999999 999999999999999999999999999999999999999999985 67999999 8985444
Q ss_pred -------HHHHHHHHHHHcCCCEEecCCCCCCCCCCCcccccc
Q psy10250 75 -------NIYYASMTAMFAGSDFIKTSTGKEKTNATIPADLTR 110 (387)
Q Consensus 75 -------~i~~a~~~a~~ag~dfvKTSTG~~~~gat~~~~~~~ 110 (387)
.|..+|++|.++|+||||||||+. .++|..+...|
T Consensus 140 ~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~-~~~t~~~~~~~ 181 (236)
T PF01791_consen 140 ADEKKPDLIARAARIAAELGADFVKTSTGKP-VGATPEDVELM 181 (236)
T ss_dssp SSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS-SCSHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHhCCCEEEecCCcc-ccccHHHHHHH
Confidence 389999999999999999999976 77776644444
No 18
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=99.74 E-value=7.1e-16 Score=139.50 Aligned_cols=195 Identities=37% Similarity=0.499 Sum_probs=160.1
Q ss_pred cccccCCCCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEecCCCC
Q psy10250 134 IDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPS 213 (387)
Q Consensus 134 ID~T~L~~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~ 213 (387)
++.+++.|..+.+.++++++... +.|+.++++.+.+++.+++...+ ..+++.+- +|.|.
T Consensus 1 ~~~~~~~~~~d~~~~~~~~~~~~----------------~~gv~gi~~~g~~i~~~~~~~~~----~~~~v~~~-v~~~~ 59 (201)
T cd00945 1 IDLTLLHPDATLEDIAKLCDEAI----------------EYGFAAVCVNPGYVRLAADALAG----SDVPVIVV-VGFPT 59 (201)
T ss_pred CcccccCCCCCHHHHHHHHHHHH----------------HhCCcEEEECHHHHHHHHHHhCC----CCCeEEEE-ecCCC
Confidence 45677788889999999999999 68999999999888888877652 25777777 59999
Q ss_pred CCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHH
Q psy10250 214 GQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAM 293 (387)
Q Consensus 214 G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~ 293 (387)
+..+++....++++|.+.|||.+.++.|+....+++.+.+.+.++++++.++.+.++-+-.......+.+++.++++++.
T Consensus 60 ~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~ 139 (201)
T cd00945 60 GLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAA 139 (201)
T ss_pred CCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999888888899999999999998721234433333222225788999999999
Q ss_pred HcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCC
Q psy10250 294 FAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGP 361 (387)
Q Consensus 294 ~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga 361 (387)
+.|+|+||+++|+.+.+.+++ .++.+++..+.++.|.+.||+++++++..++ .+|+
T Consensus 140 ~~g~~~iK~~~~~~~~~~~~~-------~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~-----~~Ga 195 (201)
T cd00945 140 EAGADFIKTSTGFGGGGATVE-------DVKLMKEAVGGRVGVKAAGGIKTLEDALAAI-----EAGA 195 (201)
T ss_pred HhCCCEEEeCCCCCCCCCCHH-------HHHHHHHhcccCCcEEEECCCCCHHHHHHHH-----Hhcc
Confidence 999999999999877677775 4555556665578999999999999999999 4787
No 19
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=99.25 E-value=1.3e-11 Score=119.78 Aligned_cols=85 Identities=19% Similarity=0.256 Sum_probs=74.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHcc-cCccEEEE-------EeccCCCCHH
Q psy10250 3 PSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCE-EKIHMKTI-------LAVGELKTSE 74 (387)
Q Consensus 3 P~G~~~~~~K~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~-~~~~~KvI-------lEt~~L~~~e 74 (387)
|+|.. ..|+.++++|++.|||++||++|++.++ +.++.+++++++++|+ .++++||| +|++ + +.+
T Consensus 88 ~~~~~--~~~~~~ve~A~~~Gad~v~~~~~~g~~~---~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~-~-~~~ 160 (267)
T PRK07226 88 PDPND--KVLVGTVEEAIKLGADAVSVHVNVGSET---EAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNE-Y-DPE 160 (267)
T ss_pred CCCCc--ceeeecHHHHHHcCCCEEEEEEecCChh---HHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCC-c-cHH
Confidence 44443 8899999999999999999999999665 6789999999999996 35789999 6998 4 678
Q ss_pred HHHHHHHHHHHcCCCEEecC
Q psy10250 75 NIYYASMTAMFAGSDFIKTS 94 (387)
Q Consensus 75 ~i~~a~~~a~~ag~dfvKTS 94 (387)
++..+|++|.+.||||||||
T Consensus 161 ~i~~a~~~a~e~GAD~vKt~ 180 (267)
T PRK07226 161 VVAHAARVAAELGADIVKTN 180 (267)
T ss_pred HHHHHHHHHHHHCCCEEeeC
Confidence 89999999999999999998
No 20
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=99.17 E-value=5.3e-11 Score=114.73 Aligned_cols=90 Identities=14% Similarity=0.276 Sum_probs=79.2
Q ss_pred CCCCCCCCHH-HHHHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHccc-CccEEEEEe-----ccCCCCH
Q psy10250 1 GFPSGQYLLE-TRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEE-KIHMKTILA-----VGELKTS 73 (387)
Q Consensus 1 gFP~G~~~~~-~K~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~-~~~~KvIlE-----t~~L~~~ 73 (387)
+||+|..++. .+..++++|++.||+++|++.|++. +++++++ +++++++++|+. +++++++++ .+++ +.
T Consensus 80 ~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g~--~~~~~~~-~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~-~~ 155 (258)
T TIGR01949 80 STSLSPDPNDKRIVTTVEDAIRMGADAVSIHVNVGS--DTEWEQI-RDLGMIAEICDDWGVPLLAMMYPRGPHIDDR-DP 155 (258)
T ss_pred CCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEecCC--chHHHHH-HHHHHHHHHHHHcCCCEEEEEeccCcccccc-cH
Confidence 6999999977 8999999999999999999999885 4567777 799999999974 578999988 7776 67
Q ss_pred HHHHHHHHHHHHcCCCEEecC
Q psy10250 74 ENIYYASMTAMFAGSDFIKTS 94 (387)
Q Consensus 74 e~i~~a~~~a~~ag~dfvKTS 94 (387)
+++.++++.+.++||||||||
T Consensus 156 ~~~~~~~~~a~~~GADyikt~ 176 (258)
T TIGR01949 156 ELVAHAARLGAELGADIVKTP 176 (258)
T ss_pred HHHHHHHHHHHHHCCCEEecc
Confidence 888888999999999999987
No 21
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=98.99 E-value=1.1e-09 Score=103.63 Aligned_cols=87 Identities=15% Similarity=0.129 Sum_probs=76.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHcccCccEEEEEeccC--------CCC
Q psy10250 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGE--------LKT 72 (387)
Q Consensus 1 gFP~G~~~~~~K~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~--------L~~ 72 (387)
+|| ..+++.+..++++|++.||+++|+++|++.+ +++++.+++++++++|++ ..+++|+|... + +
T Consensus 69 ~~p--~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~---~~~~~~~~i~~v~~~~~~-~g~~~iie~~~~g~~~~~~~-~ 141 (235)
T cd00958 69 SPK--DDNDKVLVASVEDAVRLGADAVGVTVYVGSE---EEREMLEELARVAAEAHK-YGLPLIAWMYPRGPAVKNEK-D 141 (235)
T ss_pred CCC--CCCchhhhcCHHHHHHCCCCEEEEEEecCCc---hHHHHHHHHHHHHHHHHH-cCCCEEEEEeccCCcccCcc-C
Confidence 467 7889999999999999999999999998855 478999999999999975 46899999855 4 5
Q ss_pred HHHHHHHHHHHHHcCCCEEecC
Q psy10250 73 SENIYYASMTAMFAGSDFIKTS 94 (387)
Q Consensus 73 ~e~i~~a~~~a~~ag~dfvKTS 94 (387)
.+++.++++.+.++|+|||||+
T Consensus 142 ~~~i~~~~~~a~~~GaD~Ik~~ 163 (235)
T cd00958 142 PDLIAYAARIGAELGADIVKTK 163 (235)
T ss_pred HHHHHHHHHHHHHHCCCEEEec
Confidence 6888888999999999999995
No 22
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.47 E-value=3e-06 Score=76.53 Aligned_cols=99 Identities=33% Similarity=0.459 Sum_probs=77.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHcccCccEEEEEeccCCCCHHHHHHHHHHH
Q psy10250 4 SGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGELKTSENIYYASMTA 83 (387)
Q Consensus 4 ~G~~~~~~K~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~~~e~i~~a~~~a 83 (387)
.+..+++....++++|.+.|||.+.++.|+....+++.+.+.+.++++++.++.+.++-+-..-+...+.+++.++++++
T Consensus 59 ~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~ 138 (201)
T cd00945 59 TGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIA 138 (201)
T ss_pred CCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHH
Confidence 33445899999999999999999999999988888889999999999998872234443333322222678888899988
Q ss_pred HHcCCCEEecCCCCCCCCC
Q psy10250 84 MFAGSDFIKTSTGKEKTNA 102 (387)
Q Consensus 84 ~~ag~dfvKTSTG~~~~ga 102 (387)
.+.|+|+||+++|+.+++.
T Consensus 139 ~~~g~~~iK~~~~~~~~~~ 157 (201)
T cd00945 139 AEAGADFIKTSTGFGGGGA 157 (201)
T ss_pred HHhCCCEEEeCCCCCCCCC
Confidence 9999999999999865443
No 23
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.46 E-value=4.6e-06 Score=82.56 Aligned_cols=138 Identities=19% Similarity=0.149 Sum_probs=96.1
Q ss_pred HHHHHHHHCCCCeeeeecCchhhhc-------------------CChhHHHHHHHHHHHHhCCCcceEEEEeecc-----
Q psy10250 223 HEIELLAKQKVDEVDIVIQRSLVLN-------------------NQWPELFSEVKQMKEKCGEKIHMKTILAVGE----- 278 (387)
Q Consensus 223 ~Ea~~Ai~~GAdEID~Vin~~~lk~-------------------g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~----- 278 (387)
.-|+.|.+.|+|.||+-..-++|.+ ++...+.+-+++|++++++..++.|-+....
T Consensus 145 ~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g 224 (327)
T cd02803 145 AAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGG 224 (327)
T ss_pred HHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCC
Confidence 3467888899999999886555433 2345577889999999975445555555432
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCCh-----hhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHH
Q psy10250 279 LKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATI-----PAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 353 (387)
Q Consensus 279 L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~-----~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~ 353 (387)
+ +.++....++.+.+.|+|||..|.|+....... ..-....+.++.+++.+ ++.|-++|||+|.+++.+++.
T Consensus 225 ~-~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~Ggi~t~~~a~~~l~ 301 (327)
T cd02803 225 L-TLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV--KIPVIAVGGIRDPEVAEEILA 301 (327)
T ss_pred C-CHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHH
Confidence 3 567788889999999999999999875322110 00011224566666665 578999999999999999994
Q ss_pred HHHHhc-CCCccCCCcceeeccc
Q psy10250 354 LVLIML-GPDWLNKDLFRIGASS 375 (387)
Q Consensus 354 l~~~~~-Ga~w~~~~~~RIGtSs 375 (387)
. |+ +.|+..+
T Consensus 302 -----~g~a-------D~V~igR 312 (327)
T cd02803 302 -----EGKA-------DLVALGR 312 (327)
T ss_pred -----CCCC-------CeeeecH
Confidence 5 45 5666654
No 24
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=98.40 E-value=6.9e-06 Score=82.08 Aligned_cols=123 Identities=20% Similarity=0.178 Sum_probs=80.9
Q ss_pred CCCCeeeeec---Cchhhh-cCChhHHHHHHHHHHHHhC-----CCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEE
Q psy10250 231 QKVDEVDIVI---QRSLVL-NNQWPELFSEVKQMKEKCG-----EKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 301 (387)
Q Consensus 231 ~GAdEID~Vi---n~~~lk-~g~~~~v~~Ei~~v~~~~~-----~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVK 301 (387)
.+||-||+=+ |..... ..+.+.+.+=++++++.+. -+..+|+= ..+ +++++...++.+.++|+|+|.
T Consensus 159 ~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~---~~~-~~~~~~~ia~~l~~aGad~I~ 234 (327)
T cd04738 159 PYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIA---PDL-SDEELEDIADVALEHGVDGII 234 (327)
T ss_pred hhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeC---CCC-CHHHHHHHHHHHHHcCCcEEE
Confidence 3577766522 331111 2345666666788887774 24677873 445 567888999999999999998
Q ss_pred cCCCCC-------------CCCCC-hhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 302 TSTGKE-------------KTNAT-IPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 302 TSTGf~-------------~~gat-~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
.+.++. .+|-+ +..-..-++.|+.+++.+++++.|.++|||+|.+||.+|+ .+||+
T Consensus 235 ~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l-----~aGAd 304 (327)
T cd04738 235 ATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKI-----RAGAS 304 (327)
T ss_pred EECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHH-----HcCCC
Confidence 433211 00111 1111122367888888887789999999999999999999 58984
No 25
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=98.27 E-value=8.3e-05 Score=73.35 Aligned_cols=157 Identities=15% Similarity=0.200 Sum_probs=99.1
Q ss_pred eEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeee---ecCc------hhhhcCChhHHHHHHHHHHHHhCCCcceEEE
Q psy10250 203 KVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDI---VIQR------SLVLNNQWPELFSEVKQMKEKCGEKIHMKTI 273 (387)
Q Consensus 203 ~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~---Vin~------~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvI 273 (387)
-++++ .|. ...+.=..-++.+.+.|||.||+ .+|. |.-...+.+.+.+-++++++..+-+..+|+=
T Consensus 102 ~i~si-~G~----~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~ 176 (299)
T cd02940 102 LIASI-MCE----YNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLT 176 (299)
T ss_pred EEEEe-cCC----CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECC
Confidence 35555 343 33344444455555569999998 4554 2223346777888888888776545778852
Q ss_pred EeeccCCChHHHHHHHHHHHHcCCCEEEc-----------------------CCCCCC-CC-CChhhhHhHHHHHHHHHH
Q psy10250 274 LAVGELKTSENIYCASMTAMFAGSDFIKT-----------------------STGKEK-TN-ATIPAGIIMCSAIKHFHK 328 (387)
Q Consensus 274 lEt~~L~t~e~i~~a~~ia~~aGaDfVKT-----------------------STGf~~-~g-at~~~~~~m~~~v~~~~~ 328 (387)
... +++...++.+.++|+|+|-- .|+++. .| +-.+ .-++.|+.+++
T Consensus 177 ---~~~---~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p---~~l~~v~~~~~ 247 (299)
T cd02940 177 ---PNI---TDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKP---IALRAVSQIAR 247 (299)
T ss_pred ---CCc---hhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcch---HHHHHHHHHHH
Confidence 222 35667788889999998841 222211 11 1111 11356777788
Q ss_pred HcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccc---hHHHHHHH
Q psy10250 329 LSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS---LLNNILQE 383 (387)
Q Consensus 329 ~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs---~~~il~~~ 383 (387)
.+++++.|=++|||+|.+|+.+|+ .+||+ ..-||+.. +..++.+-
T Consensus 248 ~~~~~ipIig~GGI~~~~da~~~l-----~aGA~-----~V~i~ta~~~~g~~~~~~i 295 (299)
T cd02940 248 APEPGLPISGIGGIESWEDAAEFL-----LLGAS-----VVQVCTAVMNQGFTIVDDM 295 (299)
T ss_pred hcCCCCcEEEECCCCCHHHHHHHH-----HcCCC-----hheEceeecccCCcHHHHH
Confidence 777789999999999999999999 59985 45566653 34444443
No 26
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=98.25 E-value=8.6e-05 Score=72.31 Aligned_cols=137 Identities=14% Similarity=0.075 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHHCCCCeeeeecCchhhh-----cCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHH
Q psy10250 217 LLETRLHEIELLAKQKVDEVDIVIQRSLVL-----NNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMT 291 (387)
Q Consensus 217 ~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk-----~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~i 291 (387)
..+.=..-++.+.+.|+|-|++=+.-.... ..+.+.+.+=++++++.+.-+..+|+=. .+ +.+++.+.++.
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~---~~-~~~~~~~~a~~ 184 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP---YF-DLEDIVELAKA 184 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCC---CC-CHHHHHHHHHH
Confidence 334444556677777999888743321111 1245666666788887764334555432 34 56778889999
Q ss_pred HHHcCCCEEEcCCCCCCC----------------CCChhhh-HhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHH
Q psy10250 292 AMFAGSDFIKTSTGKEKT----------------NATIPAG-IIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYL 354 (387)
Q Consensus 292 a~~aGaDfVKTSTGf~~~----------------gat~~~~-~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l 354 (387)
+.++|+|||..+.++... |.+-... ..-++.++.+++.++.++.|-++|||+|.+++.+++
T Consensus 185 l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l-- 262 (289)
T cd02810 185 AERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEML-- 262 (289)
T ss_pred HHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHH--
Confidence 999999999876543210 1010000 112356777777776679999999999999999999
Q ss_pred HHHhcCCC
Q psy10250 355 VLIMLGPD 362 (387)
Q Consensus 355 ~~~~~Ga~ 362 (387)
.+|++
T Consensus 263 ---~~GAd 267 (289)
T cd02810 263 ---MAGAS 267 (289)
T ss_pred ---HcCcc
Confidence 58984
No 27
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.10 E-value=0.00016 Score=72.98 Aligned_cols=134 Identities=19% Similarity=0.131 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHCCCCeeeeec---CchhhhcC-ChhHHHHHHHHHHHHhC-----CCcceEEEEeeccCCChHHHHHHH
Q psy10250 219 ETRLHEIELLAKQKVDEVDIVI---QRSLVLNN-QWPELFSEVKQMKEKCG-----EKIHMKTILAVGELKTSENIYCAS 289 (387)
Q Consensus 219 e~K~~Ea~~Ai~~GAdEID~Vi---n~~~lk~g-~~~~v~~Ei~~v~~~~~-----~~~~lKvIlEt~~L~t~e~i~~a~ 289 (387)
+-=+..++.+ ..+||-|++=+ |..-...+ +.+.+.+=+++|+++++ -++.+|+=. .+ +++++...+
T Consensus 157 ~d~~~~~~~~-~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp---~~-~~~~~~~ia 231 (344)
T PRK05286 157 DDYLICLEKL-YPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAP---DL-SDEELDDIA 231 (344)
T ss_pred HHHHHHHHHH-HhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCC---CC-CHHHHHHHH
Confidence 3334444444 44688877532 22111223 33455555577777775 245566542 35 556788899
Q ss_pred HHHHHcCCCEEEcCCCCCC-------------CCCC-hhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHH
Q psy10250 290 MTAMFAGSDFIKTSTGKEK-------------TNAT-IPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLV 355 (387)
Q Consensus 290 ~ia~~aGaDfVKTSTGf~~-------------~gat-~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~ 355 (387)
+.+.++|+|+|..+.++.. +|-+ +..-..-++.|+.+++.+++++.|.++|||+|.++|.+++
T Consensus 232 ~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l--- 308 (344)
T PRK05286 232 DLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKI--- 308 (344)
T ss_pred HHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHH---
Confidence 9999999999988765411 1111 1111223457788888887789999999999999999999
Q ss_pred HHhcCCC
Q psy10250 356 LIMLGPD 362 (387)
Q Consensus 356 ~~~~Ga~ 362 (387)
.+|++
T Consensus 309 --~aGAd 313 (344)
T PRK05286 309 --RAGAS 313 (344)
T ss_pred --HcCCC
Confidence 58984
No 28
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=97.92 E-value=0.0013 Score=61.72 Aligned_cols=178 Identities=17% Similarity=0.218 Sum_probs=103.1
Q ss_pred CCCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEEC-CccHHHHHHHhhhcCCCCCceEEEE-ecCCCCCCCC
Q psy10250 140 SGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVY-PARVVDVIKVLDRENARDDVKVASV-AAGFPSGQYL 217 (387)
Q Consensus 140 ~~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~-P~~v~~a~~~L~~~~~~~~v~v~tV-vigFP~G~~~ 217 (387)
.|-+...++.++.+.+. +.|..++-+. |.+++.+++. +++++..+ .-+||...-.
T Consensus 21 ~~~~~~~~i~~~a~~~~----------------~~G~~~~~~~~~~~~~~i~~~-------~~iPil~~~~~~~~~~~~~ 77 (219)
T cd04729 21 EPLHSPEIMAAMALAAV----------------QGGAVGIRANGVEDIRAIRAR-------VDLPIIGLIKRDYPDSEVY 77 (219)
T ss_pred CCcCcHHHHHHHHHHHH----------------HCCCeEEEcCCHHHHHHHHHh-------CCCCEEEEEecCCCCCCce
Confidence 35567778888888887 5666655443 3355555442 34666432 0266542211
Q ss_pred HHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCC
Q psy10250 218 LETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGS 297 (387)
Q Consensus 218 ~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGa 297 (387)
...-..+++.+++.||+- ++++...+..-+.+...+-++.+++.. .+.++.+.. |.++. ..+.++|+
T Consensus 78 ig~~~~~~~~a~~aGad~--I~~~~~~~~~p~~~~~~~~i~~~~~~g----~~~iiv~v~---t~~ea----~~a~~~G~ 144 (219)
T cd04729 78 ITPTIEEVDALAAAGADI--IALDATDRPRPDGETLAELIKRIHEEY----NCLLMADIS---TLEEA----LNAAKLGF 144 (219)
T ss_pred eCCCHHHHHHHHHcCCCE--EEEeCCCCCCCCCcCHHHHHHHHHHHh----CCeEEEECC---CHHHH----HHHHHcCC
Confidence 111235899999999992 556654433222234445555555433 245565442 54554 55677899
Q ss_pred CEEEc-CCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 298 DFIKT-STGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 298 DfVKT-STGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
|||++ +.|+........ ....+.++.+++.+ ++.|=+.|||+|.+++..++ .+|++
T Consensus 145 d~i~~~~~g~t~~~~~~~--~~~~~~l~~i~~~~--~ipvia~GGI~~~~~~~~~l-----~~Gad 201 (219)
T cd04729 145 DIIGTTLSGYTEETAKTE--DPDFELLKELRKAL--GIPVIAEGRINSPEQAAKAL-----ELGAD 201 (219)
T ss_pred CEEEccCccccccccCCC--CCCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHH-----HCCCC
Confidence 99986 345432211000 01124566666655 47788999999999999999 48874
No 29
>PRK08227 autoinducer 2 aldolase; Validated
Probab=97.91 E-value=0.0003 Score=68.68 Aligned_cols=187 Identities=13% Similarity=0.081 Sum_probs=114.5
Q ss_pred hccccccc-CCCCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEec
Q psy10250 131 IEFIDLTT-LSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAA 209 (387)
Q Consensus 131 ~~~ID~T~-L~~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvi 209 (387)
+=-+||-+ ..|....+++...+.+.. . ++.++.+.+-.++.......+ .+. +.-+ -
T Consensus 26 iva~DHG~~~Gp~~gl~~~~~~~~~i~----------------~-~~da~~~~~G~~~~~~~~~~~----~~l-il~l-s 82 (264)
T PRK08227 26 MLAFDHGYFQGPTTGLERIDINIAPLF----------------P-YADVLMCTRGILRSVVPPATN----KPV-VLRA-S 82 (264)
T ss_pred EEECCCccccCCCccccChHHHHHHHh----------------h-cCCEEEeChhHHHhcccccCC----CcE-EEEE-c
Confidence 44567765 346666666666666655 3 577888887666653333221 121 1111 0
Q ss_pred CC-CC-CCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCC-CcceEEEEeecc-CC-ChHH
Q psy10250 210 GF-PS-GQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGE-KIHMKTILAVGE-LK-TSEN 284 (387)
Q Consensus 210 gF-P~-G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~-~~~lKvIlEt~~-L~-t~e~ 284 (387)
+- .+ ...+...-+...++|++.|||-+=+-+|+| +..-..-.+++.++++.|+. +.|+=++..-+. .. +.+.
T Consensus 83 ~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~G---s~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ 159 (264)
T PRK08227 83 GGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFIG---SEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARY 159 (264)
T ss_pred CCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecC---CHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHH
Confidence 11 11 112345556668899999999999999999 34446677889999999975 344333322221 21 2356
Q ss_pred HHHHHHHHHHcCCCEEEcC-CCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCC-HHHHHHHHHHHHHhcCC
Q psy10250 285 IYCASMTAMFAGSDFIKTS-TGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGIST-FEDSVRWIYLVLIMLGP 361 (387)
Q Consensus 285 i~~a~~ia~~aGaDfVKTS-TGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt-~~~a~~~i~l~~~~~Ga 361 (387)
|.-|++++.+.|||||||. || .+++ ...+ ..++.|=.+||=++ .+++++++.-+.+ .|+
T Consensus 160 ia~aaRiaaELGADiVK~~y~~-----~~f~----------~vv~--a~~vPVviaGG~k~~~~~~L~~v~~ai~-aGa 220 (264)
T PRK08227 160 FSLATRIAAEMGAQIIKTYYVE-----EGFE----------RITA--GCPVPIVIAGGKKLPERDALEMCYQAID-EGA 220 (264)
T ss_pred HHHHHHHHHHHcCCEEecCCCH-----HHHH----------HHHH--cCCCcEEEeCCCCCCHHHHHHHHHHHHH-cCC
Confidence 8889999999999999985 32 2222 1122 35678889999984 4556666654443 565
No 30
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=97.83 E-value=0.00014 Score=73.30 Aligned_cols=181 Identities=17% Similarity=0.079 Sum_probs=110.2
Q ss_pred CHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHH-HHHHhhhcCCCCCc--eEEEEecC--CCCCCCCH
Q psy10250 144 TEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVD-VIKVLDRENARDDV--KVASVAAG--FPSGQYLL 218 (387)
Q Consensus 144 T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~-a~~~L~~~~~~~~v--~v~tVvig--FP~G~~~~ 218 (387)
..++.+.+++.+. +.++.++..++-.++. +.....+ .+. ++.+- .+ +|. .+.
T Consensus 89 gl~dp~~~i~~a~----------------~~g~dAv~~~~G~l~~~~~~~~~~----iplIlkln~~-t~l~~~~--~~~ 145 (348)
T PRK09250 89 LYFDPENIVKLAI----------------EAGCNAVASTLGVLEAVARKYAHK----IPFILKLNHN-ELLSYPN--TYD 145 (348)
T ss_pred cccCHHHHHHHHH----------------hcCCCEEEeCHHHHHhccccccCC----CCEEEEeCCC-CCCCCCC--CCc
Confidence 5667778888888 5678888888766665 2222221 111 11111 11 222 124
Q ss_pred HHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCC-CcceEEEEee---c-cCC-------ChHHHH
Q psy10250 219 ETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGE-KIHMKTILAV---G-ELK-------TSENIY 286 (387)
Q Consensus 219 e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~-~~~lKvIlEt---~-~L~-------t~e~i~ 286 (387)
..-+..+++|+++|||-+=+-+|+| +.+-..-.+|+.++++.|+. +.+ +|++. + .+. +++.|.
T Consensus 146 ~~l~~sVedAlrLGAdAV~~tvy~G---s~~E~~ml~~l~~i~~ea~~~GlP--lv~~~YpRG~~i~~~~d~~~~~d~Ia 220 (348)
T PRK09250 146 QALTASVEDALRLGAVAVGATIYFG---SEESRRQIEEISEAFEEAHELGLA--TVLWSYLRNSAFKKDGDYHTAADLTG 220 (348)
T ss_pred ccceecHHHHHHCCCCEEEEEEecC---CHHHHHHHHHHHHHHHHHHHhCCC--EEEEecccCcccCCcccccccHHHHH
Confidence 4455668999999999999999999 44556677889999999975 333 55532 1 111 246788
Q ss_pred HHHHHHHHcCCCEEEcC-CCC----CCC-----------CCChhhhHhHHHHHHHHHHHc-CCCceEeEeccCC-CHHHH
Q psy10250 287 CASMTAMFAGSDFIKTS-TGK----EKT-----------NATIPAGIIMCSAIKHFHKLS-GKKIGLKPAGGIS-TFEDS 348 (387)
Q Consensus 287 ~a~~ia~~aGaDfVKTS-TGf----~~~-----------gat~~~~~~m~~~v~~~~~~~-~~~~gIKasGGIr-t~~~a 348 (387)
-|+++|.+.|||+|||. ||- ... +-+.+. ..+-++...+.. .++++|=.|||=+ +.++.
T Consensus 221 ~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~---~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~ 297 (348)
T PRK09250 221 QANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDH---PIDLVRYQVANCYMGRRGLINSGGASKGEDDL 297 (348)
T ss_pred HHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccc---hHHHHHHHHHhhccCCceEEEeCCCCCCHHHH
Confidence 99999999999999995 431 110 000110 012223323332 4578999999998 45556
Q ss_pred HHHHHHH
Q psy10250 349 VRWIYLV 355 (387)
Q Consensus 349 ~~~i~l~ 355 (387)
++++.-+
T Consensus 298 L~~v~~a 304 (348)
T PRK09250 298 LDAVRTA 304 (348)
T ss_pred HHHHHHH
Confidence 6666533
No 31
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=97.81 E-value=0.0011 Score=61.05 Aligned_cols=160 Identities=17% Similarity=0.238 Sum_probs=101.8
Q ss_pred CCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEE---CCccHHHHHHHhhhcCCCCCceEEEEecCCCCCCCCHH
Q psy10250 143 DTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCV---YPARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLE 219 (387)
Q Consensus 143 ~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV---~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~~e 219 (387)
.+.++....++.+. +.|+..+.+ +|.+.+..+..-+.. .++.+++- .-.
T Consensus 13 ~~~~~~~~~~~~l~----------------~~G~~~vev~~~~~~~~~~i~~l~~~~---~~~~iGag-------~v~-- 64 (190)
T cd00452 13 DDAEDALALAEALI----------------EGGIRAIEITLRTPGALEAIRALRKEF---PEALIGAG-------TVL-- 64 (190)
T ss_pred CCHHHHHHHHHHHH----------------HCCCCEEEEeCCChhHHHHHHHHHHHC---CCCEEEEE-------eCC--
Confidence 36888888888888 678888998 676777665544431 23444321 111
Q ss_pred HHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCE
Q psy10250 220 TRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDF 299 (387)
Q Consensus 220 ~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDf 299 (387)
-...++.|++.||+-| + ++.++ .++.. .++. ...++|++.. |.+|+.+| .++|+||
T Consensus 65 -~~~~~~~a~~~Ga~~i--~-------~p~~~---~~~~~---~~~~-~~~~~i~gv~---t~~e~~~A----~~~Gad~ 120 (190)
T cd00452 65 -TPEQADAAIAAGAQFI--V-------SPGLD---PEVVK---AANR-AGIPLLPGVA---TPTEIMQA----LELGADI 120 (190)
T ss_pred -CHHHHHHHHHcCCCEE--E-------cCCCC---HHHHH---HHHH-cCCcEECCcC---CHHHHHHH----HHCCCCE
Confidence 1347788999999876 1 12222 23333 3332 2357787665 66776544 6799999
Q ss_pred EEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccchHH
Q psy10250 300 IKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLN 378 (387)
Q Consensus 300 VKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~~~ 378 (387)
||. |......+ +-++.+++..+ .+.+=++||| |.+.+..|+ .+|+ +.++.+|.+-
T Consensus 121 i~~---~p~~~~g~-------~~~~~l~~~~~-~~p~~a~GGI-~~~n~~~~~-----~~G~-------~~v~v~s~i~ 175 (190)
T cd00452 121 VKL---FPAEAVGP-------AYIKALKGPFP-QVRFMPTGGV-SLDNAAEWL-----AAGV-------VAVGGGSLLP 175 (190)
T ss_pred EEE---cCCcccCH-------HHHHHHHhhCC-CCeEEEeCCC-CHHHHHHHH-----HCCC-------EEEEEchhcc
Confidence 996 31111122 24455544433 4889999999 999999999 5888 7999988753
No 32
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.79 E-value=0.0015 Score=64.40 Aligned_cols=142 Identities=11% Similarity=0.098 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHC---CCCeeeeec---Cchhh--hcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHH
Q psy10250 219 ETRLHEIELLAKQ---KVDEVDIVI---QRSLV--LNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASM 290 (387)
Q Consensus 219 e~K~~Ea~~Ai~~---GAdEID~Vi---n~~~l--k~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ 290 (387)
+.=+.-++...+. |||-||+=+ |.... ...+.+.+.+=++++++...-+..+|+ +..+ +.+++.++++
T Consensus 103 ~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl---~p~~-~~~~~~~~a~ 178 (294)
T cd04741 103 EDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVKT---PPYT-DPAQFDTLAE 178 (294)
T ss_pred HHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEe---CCCC-CHHHHHHHHH
Confidence 3333444444443 688877632 22110 122577777778888877654466776 3345 5567888888
Q ss_pred HHHHc--CCCEEEc--C--CC--------C-------CCCCCC-hhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHH
Q psy10250 291 TAMFA--GSDFIKT--S--TG--------K-------EKTNAT-IPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDS 348 (387)
Q Consensus 291 ia~~a--GaDfVKT--S--TG--------f-------~~~gat-~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a 348 (387)
.+.++ |+|+|-. + .| . +.+|.+ +..-..-++.|+.+++.++.++.|=++|||.|.+||
T Consensus 179 ~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da 258 (294)
T cd04741 179 ALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGA 258 (294)
T ss_pred HHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHH
Confidence 88888 9998862 0 11 0 011211 111112235677777887777999999999999999
Q ss_pred HHHHHHHHHhcCCCccCCCcceeecc
Q psy10250 349 VRWIYLVLIMLGPDWLNKDLFRIGAS 374 (387)
Q Consensus 349 ~~~i~l~~~~~Ga~w~~~~~~RIGtS 374 (387)
++|+ ++||+ ..=|||.
T Consensus 259 ~e~l-----~aGA~-----~Vqv~ta 274 (294)
T cd04741 259 FRMR-----LAGAS-----AVQVGTA 274 (294)
T ss_pred HHHH-----HcCCC-----ceeEchh
Confidence 9999 58985 3445554
No 33
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=97.73 E-value=0.0023 Score=61.35 Aligned_cols=199 Identities=15% Similarity=0.116 Sum_probs=124.3
Q ss_pred hhHHHHHHhhcccccccCCCCCCHHHHHHHHHHhcC-CCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCC
Q psy10250 122 NKKSLLLKIIEFIDLTTLSGDDTEAVVETLTLKAIQ-PLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARD 200 (387)
Q Consensus 122 ~~~~~~~~l~~~ID~T~L~~~~T~~~i~~l~~~A~~-~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~ 200 (387)
...+|.++..++++...|......+.-.+..++-.. ... ++ -++.-- +..|+..--..++ +
T Consensus 5 ~d~~~~~~~~~~~~~~~lgg~~~d~~t~~a~~~~~~rgr~-ef---------~~~~e~---~~~~i~~e~~~~~-----~ 66 (231)
T TIGR00736 5 TDAEFCRKFKDLFAIVTLGGYNADRATYKASRDIEKRGRK-EF---------SFNLEE---FNSYIIEQIKKAE-----S 66 (231)
T ss_pred chHHHHHhcCcCcCEEEECCccCCHHHHHHHHHHHHcCCc-cc---------CcCccc---HHHHHHHHHHHHh-----h
Confidence 346788999999999999988877776666655542 111 00 001000 2245554444443 2
Q ss_pred CceEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeec----------CchhhhcCChhHHHHHHHHHHHHhCCCcce
Q psy10250 201 DVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVI----------QRSLVLNNQWPELFSEVKQMKEKCGEKIHM 270 (387)
Q Consensus 201 ~v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vi----------n~~~lk~g~~~~v~~Ei~~v~~~~~~~~~l 270 (387)
+.++.. =.|..+.+ -..++...++.+++-||+=+ ..|..+-.|.+.+.+=++++++ .+-++.+
T Consensus 67 ~~~viv-----nv~~~~~e-e~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~-~~~PVsv 139 (231)
T TIGR00736 67 RALVSV-----NVRFVDLE-EAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE-LNKPIFV 139 (231)
T ss_pred cCCEEE-----EEecCCHH-HHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-CCCcEEE
Confidence 333322 23555555 34444455677999999732 2344455688888888888884 3334666
Q ss_pred EEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCC-CChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHH
Q psy10250 271 KTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTN-ATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSV 349 (387)
Q Consensus 271 KvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~g-at~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~ 349 (387)
|+=+.. +++.....++.+.++|+|+|.-..++...+ +.. +.|+.+++.++ .+.|=+.|||+|+++|.
T Consensus 140 KiR~~~----~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~-------~~I~~i~~~~~-~ipIIgNGgI~s~eda~ 207 (231)
T TIGR00736 140 KIRGNC----IPLDELIDALNLVDDGFDGIHVDAMYPGKPYADM-------DLLKILSEEFN-DKIIIGNNSIDDIESAK 207 (231)
T ss_pred EeCCCC----CcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhH-------HHHHHHHHhcC-CCcEEEECCcCCHHHHH
Confidence 765532 223455678889999999997766553221 222 56777777653 37788999999999999
Q ss_pred HHHHHHHHhcCCC
Q psy10250 350 RWIYLVLIMLGPD 362 (387)
Q Consensus 350 ~~i~l~~~~~Ga~ 362 (387)
+|+ +.|++
T Consensus 208 e~l-----~~GAd 215 (231)
T TIGR00736 208 EML-----KAGAD 215 (231)
T ss_pred HHH-----HhCCC
Confidence 999 47885
No 34
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=97.71 E-value=0.0023 Score=62.94 Aligned_cols=132 Identities=23% Similarity=0.240 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHCC-CCeeee---ecCc---hhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHH
Q psy10250 218 LETRLHEIELLAKQK-VDEVDI---VIQR---SLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASM 290 (387)
Q Consensus 218 ~e~K~~Ea~~Ai~~G-AdEID~---Vin~---~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ 290 (387)
.+.=..-++.+.+.| +|-||+ .+|. +....++.+.+.+=+++|++++.-++.+|+-. +.+++...++
T Consensus 103 ~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~------~~~~~~~~a~ 176 (301)
T PRK07259 103 EEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP------NVTDIVEIAK 176 (301)
T ss_pred HHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCC------CchhHHHHHH
Confidence 344445566666778 999988 3343 33444567778888888888774346677642 2245677788
Q ss_pred HHHHcCCCEEE---cCCCCC-------------CCCCChhhh-HhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHH
Q psy10250 291 TAMFAGSDFIK---TSTGKE-------------KTNATIPAG-IIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 353 (387)
Q Consensus 291 ia~~aGaDfVK---TSTGf~-------------~~gat~~~~-~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~ 353 (387)
.+.++|+|+|- |+.|+. .+|-+.+.. ..-++.++.+++.+ ++.|=+.|||+|.+++.+++
T Consensus 177 ~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~--~ipvi~~GGI~~~~da~~~l- 253 (301)
T PRK07259 177 AAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV--DIPIIGMGGISSAEDAIEFI- 253 (301)
T ss_pred HHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHH-
Confidence 89999999873 222221 001110000 01124555666654 57888999999999999999
Q ss_pred HHHHhcCCC
Q psy10250 354 LVLIMLGPD 362 (387)
Q Consensus 354 l~~~~~Ga~ 362 (387)
.+|++
T Consensus 254 ----~aGAd 258 (301)
T PRK07259 254 ----MAGAS 258 (301)
T ss_pred ----HcCCC
Confidence 58985
No 35
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=97.65 E-value=0.0037 Score=58.50 Aligned_cols=137 Identities=15% Similarity=0.127 Sum_probs=90.6
Q ss_pred CCceEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeec----------CchhhhcCChhHHHHHHHHHHHHhCCCcc
Q psy10250 200 DDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVI----------QRSLVLNNQWPELFSEVKQMKEKCGEKIH 269 (387)
Q Consensus 200 ~~v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vi----------n~~~lk~g~~~~v~~Ei~~v~~~~~~~~~ 269 (387)
.+.++...+ + ....+.=...++.+.+.|+|.||+=+ .+|.-..++.+.+.+-++++++.++-+..
T Consensus 53 ~~~p~~~qi-~----g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~ 127 (231)
T cd02801 53 EERPLIVQL-G----GSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVT 127 (231)
T ss_pred cCCCEEEEE-c----CCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEE
Confidence 455555553 2 33445556667778788999998732 13444456888899999999988873345
Q ss_pred eEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCC----CCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCH
Q psy10250 270 MKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGK----EKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTF 345 (387)
Q Consensus 270 lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf----~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~ 345 (387)
+|+ -.+.- .+++....++.+.++|+|||.-+.+. ...++.+ +.++.+++. .++.|.++|||+|+
T Consensus 128 vk~--r~~~~-~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~-------~~~~~i~~~--~~ipvi~~Ggi~~~ 195 (231)
T cd02801 128 VKI--RLGWD-DEEETLELAKALEDAGASALTVHGRTREQRYSGPADW-------DYIAEIKEA--VSIPVIANGDIFSL 195 (231)
T ss_pred EEE--eeccC-CchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCH-------HHHHHHHhC--CCCeEEEeCCCCCH
Confidence 554 33332 22367778888889999999543331 1123333 345555553 46889999999999
Q ss_pred HHHHHHHH
Q psy10250 346 EDSVRWIY 353 (387)
Q Consensus 346 ~~a~~~i~ 353 (387)
+++.+++.
T Consensus 196 ~d~~~~l~ 203 (231)
T cd02801 196 EDALRCLE 203 (231)
T ss_pred HHHHHHHH
Confidence 99999994
No 36
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=97.63 E-value=0.0049 Score=57.89 Aligned_cols=181 Identities=19% Similarity=0.189 Sum_probs=98.0
Q ss_pred CCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEEC-CccHHHHHHHhhhcCCCCCceEEEEe-cCC---CCCC
Q psy10250 141 GDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVY-PARVVDVIKVLDRENARDDVKVASVA-AGF---PSGQ 215 (387)
Q Consensus 141 ~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~-P~~v~~a~~~L~~~~~~~~v~v~tVv-igF---P~G~ 215 (387)
|-.+.+++.++.+.+. ..|..++.+. |..++.+++. +++++.... -.| |.=.
T Consensus 18 ~~~~~~~~~~~a~a~~----------------~~G~~~~~~~~~~~i~~i~~~-------~~~Pil~~~~~d~~~~~~~~ 74 (221)
T PRK01130 18 PLHSPEIMAAMALAAV----------------QGGAVGIRANGVEDIKAIRAV-------VDVPIIGIIKRDYPDSEVYI 74 (221)
T ss_pred CCCCHHHHHHHHHHHH----------------HCCCeEEEcCCHHHHHHHHHh-------CCCCEEEEEecCCCCCCceE
Confidence 3346677777777766 5676666664 3344444332 345554220 021 2211
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHc
Q psy10250 216 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFA 295 (387)
Q Consensus 216 ~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~a 295 (387)
.. -..++++|.+.|||= ++++...+.+-+-+.+.+-++.+++. . .+.++.++. +.+++ +.+.++
T Consensus 75 ~~---~~~~v~~a~~aGad~--I~~d~~~~~~p~~~~~~~~i~~~~~~-~---~i~vi~~v~---t~ee~----~~a~~~ 138 (221)
T PRK01130 75 TP---TLKEVDALAAAGADI--IALDATLRPRPDGETLAELVKRIKEY-P---GQLLMADCS---TLEEG----LAAQKL 138 (221)
T ss_pred CC---CHHHHHHHHHcCCCE--EEEeCCCCCCCCCCCHHHHHHHHHhC-C---CCeEEEeCC---CHHHH----HHHHHc
Confidence 11 225789999999982 33343332211002222223333322 2 366777654 44554 457889
Q ss_pred CCCEEEcC-CCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeecc
Q psy10250 296 GSDFIKTS-TGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 374 (387)
Q Consensus 296 GaDfVKTS-TGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtS 374 (387)
|+|||.++ .|+........ ....+.++.+++.+ ++.|=++|||+|.+++..++ .+|++ ..-+|++
T Consensus 139 G~d~i~~~~~g~t~~~~~~~--~~~~~~i~~i~~~~--~iPvia~GGI~t~~~~~~~l-----~~Gad-----gV~iGsa 204 (221)
T PRK01130 139 GFDFIGTTLSGYTEETKKPE--EPDFALLKELLKAV--GCPVIAEGRINTPEQAKKAL-----ELGAH-----AVVVGGA 204 (221)
T ss_pred CCCEEEcCCceeecCCCCCC--CcCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHH-----HCCCC-----EEEEchH
Confidence 99999873 44422110000 01123556666655 46777899999999999999 58874 3556643
No 37
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.62 E-value=0.0039 Score=62.46 Aligned_cols=132 Identities=12% Similarity=0.096 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHCCCCeeeeec---Cch-hhhcCCh-hHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHH
Q psy10250 218 LETRLHEIELLAKQKVDEVDIVI---QRS-LVLNNQW-PELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTA 292 (387)
Q Consensus 218 ~e~K~~Ea~~Ai~~GAdEID~Vi---n~~-~lk~g~~-~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia 292 (387)
.+.-..-++.+.+.|||-|++=+ |.. ....++. +.+.+-++++++.+.-++.+|. ++.+ +++...++.+
T Consensus 113 ~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl---~p~~---~~~~~~a~~l 186 (334)
T PRK07565 113 AGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKL---SPYF---SNLANMAKRL 186 (334)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEe---CCCc---hhHHHHHHHH
Confidence 33334445555566999888722 211 1111122 2355666777776654466774 3334 2466677888
Q ss_pred HHcCCCEEEcCCCCCCCCC--------------ChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHh
Q psy10250 293 MFAGSDFIKTSTGKEKTNA--------------TIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIM 358 (387)
Q Consensus 293 ~~aGaDfVKTSTGf~~~ga--------------t~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~ 358 (387)
.++|+|+|--+..+..... ++..-...++.|+.+++.+ ++.|=++|||+|.+||.+++ .
T Consensus 187 ~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~--~ipIig~GGI~s~~Da~e~l-----~ 259 (334)
T PRK07565 187 DAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV--GADLAATTGVHDAEDVIKML-----L 259 (334)
T ss_pred HHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc--CCCEEEECCCCCHHHHHHHH-----H
Confidence 8999999854322211101 1111112234566666554 58899999999999999999 5
Q ss_pred cCCC
Q psy10250 359 LGPD 362 (387)
Q Consensus 359 ~Ga~ 362 (387)
+||+
T Consensus 260 aGA~ 263 (334)
T PRK07565 260 AGAD 263 (334)
T ss_pred cCCC
Confidence 9984
No 38
>PRK06852 aldolase; Validated
Probab=97.62 E-value=0.0016 Score=64.82 Aligned_cols=184 Identities=20% Similarity=0.154 Sum_probs=112.4
Q ss_pred CCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEecCC-CCC----CC
Q psy10250 142 DDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGF-PSG----QY 216 (387)
Q Consensus 142 ~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigF-P~G----~~ 216 (387)
..-.++.+.+++.+. +.++.++..++-.++....... ++.+..=+-+- .+. ..
T Consensus 55 ~~gl~dp~~~i~~~~----------------~~g~dav~~~~G~l~~~~~~~~------~~~lIlkl~~~t~l~~~~~~~ 112 (304)
T PRK06852 55 AKDDADPEHLFRIAS----------------KAKIGVFATQLGLIARYGMDYP------DVPYLVKLNSKTNLVKTSQRD 112 (304)
T ss_pred CcccCCHHHHHHHHH----------------hcCCCEEEeCHHHHHhhccccC------CCcEEEEECCCCCcCCcccCC
Confidence 445567778888888 5678888888766665333222 12221110110 111 12
Q ss_pred CHHHHHHHHHHHHHCC------CCeeeeecCchhhhcCChhHHHHHHHHHHHHhCC-CcceEEEEee---c-cCC---Ch
Q psy10250 217 LLETRLHEIELLAKQK------VDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGE-KIHMKTILAV---G-ELK---TS 282 (387)
Q Consensus 217 ~~e~K~~Ea~~Ai~~G------AdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~-~~~lKvIlEt---~-~L~---t~ 282 (387)
+...-+..+++|+++| ||-+=+-+|+| +..-..-.+++.++++.|+. +.+ +|++. + ... ++
T Consensus 113 p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~G---s~~E~~ml~~l~~v~~ea~~~GlP--ll~~~yprG~~i~~~~~~ 187 (304)
T PRK06852 113 PLSRQLLDVEQVVEFKENSGLNILGVGYTIYLG---SEYESEMLSEAAQIIYEAHKHGLI--AVLWIYPRGKAVKDEKDP 187 (304)
T ss_pred ccccceecHHHHHhcCCccCCCceEEEEEEecC---CHHHHHHHHHHHHHHHHHHHhCCc--EEEEeeccCcccCCCccH
Confidence 2225556688999998 88999999999 44446677889999999975 334 44432 1 111 23
Q ss_pred HHHHHHHHHHHHcCCCEEEcC-CCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCC-HHHHHHHHHHHHHhcC
Q psy10250 283 ENIYCASMTAMFAGSDFIKTS-TGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGIST-FEDSVRWIYLVLIMLG 360 (387)
Q Consensus 283 e~i~~a~~ia~~aGaDfVKTS-TGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt-~~~a~~~i~l~~~~~G 360 (387)
+.|.-|+++|.+.|||+|||. |+-. ..-.++ ..+...+. -+++.|=.|||=++ .++.++++.-+.++.|
T Consensus 188 ~~ia~aaRiaaELGADIVKv~y~~~~-~~g~~e-------~f~~vv~~-~g~vpVviaGG~k~~~~e~L~~v~~ai~~aG 258 (304)
T PRK06852 188 HLIAGAAGVAACLGADFVKVNYPKKE-GANPAE-------LFKEAVLA-AGRTKVVCAGGSSTDPEEFLKQLYEQIHISG 258 (304)
T ss_pred HHHHHHHHHHHHHcCCEEEecCCCcC-CCCCHH-------HHHHHHHh-CCCCcEEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence 678899999999999999995 4311 101122 22222232 24688889999984 4556666654444467
Q ss_pred C
Q psy10250 361 P 361 (387)
Q Consensus 361 a 361 (387)
+
T Consensus 259 a 259 (304)
T PRK06852 259 A 259 (304)
T ss_pred C
Confidence 6
No 39
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=97.52 E-value=0.0019 Score=63.68 Aligned_cols=116 Identities=22% Similarity=0.301 Sum_probs=78.4
Q ss_pred HHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEE
Q psy10250 222 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 301 (387)
Q Consensus 222 ~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVK 301 (387)
...++.+.+.|++-|++-+|-.... +- ...+.++.+++.++.+..+|.+ + +.+. ++.+.++|+|+|-
T Consensus 132 ~~~i~~~~~~g~~~i~l~~~~p~~~--~~-~~~~~i~~l~~~~~~pvivK~v-----~-s~~~----a~~a~~~G~d~I~ 198 (299)
T cd02809 132 EDLLRRAEAAGYKALVLTVDTPVLG--RR-LTWDDLAWLRSQWKGPLILKGI-----L-TPED----ALRAVDAGADGIV 198 (299)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCCC--CC-CCHHHHHHHHHhcCCCEEEeec-----C-CHHH----HHHHHHCCCCEEE
Confidence 3346667778999988877755322 21 2446778888877644667743 4 4333 5678899999997
Q ss_pred cCC--CCCC--CCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 302 TST--GKEK--TNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 302 TST--Gf~~--~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
.+- |... +.+|. +.+..+++..++++.|=++|||++..++.+++ .+||+
T Consensus 199 v~~~gG~~~~~g~~~~-------~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal-----~lGAd 251 (299)
T cd02809 199 VSNHGGRQLDGAPATI-------DALPEIVAAVGGRIEVLLDGGIRRGTDVLKAL-----ALGAD 251 (299)
T ss_pred EcCCCCCCCCCCcCHH-------HHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHH-----HcCCC
Confidence 753 2111 12333 35555666666678999999999999999999 58985
No 40
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.52 E-value=0.0084 Score=58.73 Aligned_cols=132 Identities=21% Similarity=0.241 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHCCCCeeeeecCc------hhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHH
Q psy10250 218 LETRLHEIELLAKQKVDEVDIVIQR------SLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMT 291 (387)
Q Consensus 218 ~e~K~~Ea~~Ai~~GAdEID~Vin~------~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~i 291 (387)
.+.=..-++.+.+.|+|-||+=+.- +.-..++.+.+.+=++++++.+.-+..+|+ +..+ ++....++.
T Consensus 101 ~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl---~~~~---~~~~~~a~~ 174 (296)
T cd04740 101 VEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKL---TPNV---TDIVEIARA 174 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEe---CCCc---hhHHHHHHH
Confidence 4444555666667789988873221 122235567777778888877643466774 2222 356677788
Q ss_pred HHHcCCCEEEcC---CCCCC-------------CCCChhh-hHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHH
Q psy10250 292 AMFAGSDFIKTS---TGKEK-------------TNATIPA-GIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYL 354 (387)
Q Consensus 292 a~~aGaDfVKTS---TGf~~-------------~gat~~~-~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l 354 (387)
+.++|+|+|.-+ .|... ++.+-+. -..-++.++.+++.+ ++.|=++|||+|.+++.+++
T Consensus 175 ~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~--~ipii~~GGI~~~~da~~~l-- 250 (296)
T cd04740 175 AEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV--EIPIIGVGGIASGEDALEFL-- 250 (296)
T ss_pred HHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHH--
Confidence 999999998642 12100 0111000 001124556666654 57888999999999999999
Q ss_pred HHHhcCCC
Q psy10250 355 VLIMLGPD 362 (387)
Q Consensus 355 ~~~~~Ga~ 362 (387)
.+|++
T Consensus 251 ---~~GAd 255 (296)
T cd04740 251 ---MAGAS 255 (296)
T ss_pred ---HcCCC
Confidence 58985
No 41
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=97.45 E-value=0.003 Score=58.36 Aligned_cols=113 Identities=19% Similarity=0.224 Sum_probs=70.3
Q ss_pred HHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEee-ccCCChHHHHHHHHHHHHcCCCEEEc
Q psy10250 224 EIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAV-GELKTSENIYCASMTAMFAGSDFIKT 302 (387)
Q Consensus 224 Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt-~~L~t~e~i~~a~~ia~~aGaDfVKT 302 (387)
+++.+.+.|||-|=+- .. .+. ..+.++.+.++. .-++++++. +.-+..+++ +.+.+.|+|||+.
T Consensus 68 ~~~~~~~~Gad~i~vh--~~---~~~-----~~~~~~i~~~~~-~g~~~~~~~~~~~t~~~~~----~~~~~~g~d~v~~ 132 (206)
T TIGR03128 68 EAEQAFAAGADIVTVL--GV---ADD-----ATIKGAVKAAKK-HGKEVQVDLINVKDKVKRA----KELKELGADYIGV 132 (206)
T ss_pred HHHHHHHcCCCEEEEe--cc---CCH-----HHHHHHHHHHHH-cCCEEEEEecCCCChHHHH----HHHHHcCCCEEEE
Confidence 7899999999975432 21 111 233444444443 347999975 322112333 4456779999999
Q ss_pred CCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 303 STGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 303 STGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
.+||......+. ..+.++.+++..+ .+.|=+.||| +.+.+..++ .+|++
T Consensus 133 ~pg~~~~~~~~~----~~~~i~~l~~~~~-~~~i~v~GGI-~~~n~~~~~-----~~Ga~ 181 (206)
T TIGR03128 133 HTGLDEQAKGQN----PFEDLQTILKLVK-EARVAVAGGI-NLDTIPDVI-----KLGPD 181 (206)
T ss_pred cCCcCcccCCCC----CHHHHHHHHHhcC-CCcEEEECCc-CHHHHHHHH-----HcCCC
Confidence 998853222111 1246666666654 3567779999 888999998 58985
No 42
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=97.45 E-value=0.0094 Score=59.69 Aligned_cols=136 Identities=12% Similarity=0.111 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHCCCCeeeeecCchhh--hcCCh-----hHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHH
Q psy10250 219 ETRLHEIELLAKQKVDEVDIVIQRSLV--LNNQW-----PELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMT 291 (387)
Q Consensus 219 e~K~~Ea~~Ai~~GAdEID~Vin~~~l--k~g~~-----~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~i 291 (387)
+.=..-++.+-+.|||-|++ |++.. ..+.+ +.+.+-++++++.+.-|..+|. ++.++ ++...++.
T Consensus 112 ~~~~~~a~~~~~~gad~iEl--N~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl---~p~~~---~~~~~a~~ 183 (325)
T cd04739 112 GGWVDYARQIEEAGADALEL--NIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKL---SPFFS---ALAHMAKQ 183 (325)
T ss_pred HHHHHHHHHHHhcCCCEEEE--eCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEc---CCCcc---CHHHHHHH
Confidence 43344455555669888765 44321 11111 3455667777776654567774 34442 46667788
Q ss_pred HHHcCCCEEEcCCCCCCCCCCh--------------hhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHH
Q psy10250 292 AMFAGSDFIKTSTGKEKTNATI--------------PAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLI 357 (387)
Q Consensus 292 a~~aGaDfVKTSTGf~~~gat~--------------~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~ 357 (387)
+.++|+|.|--+-.+....... ..-..-++.|+.+++.+ ++.|=++|||+|.+||.+++
T Consensus 184 l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~--~ipIig~GGI~s~~Da~e~l----- 256 (325)
T cd04739 184 LDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV--KASLAASGGVHDAEDVVKYL----- 256 (325)
T ss_pred HHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHccc--CCCEEEECCCCCHHHHHHHH-----
Confidence 8899999885432221111110 00001123455555443 68899999999999999999
Q ss_pred hcCCCccCCCcceeecc
Q psy10250 358 MLGPDWLNKDLFRIGAS 374 (387)
Q Consensus 358 ~~Ga~w~~~~~~RIGtS 374 (387)
.+||+ ..=||+.
T Consensus 257 ~aGA~-----~Vqv~ta 268 (325)
T cd04739 257 LAGAD-----VVMTTSA 268 (325)
T ss_pred HcCCC-----eeEEehh
Confidence 58985 4446654
No 43
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=97.43 E-value=0.012 Score=57.88 Aligned_cols=118 Identities=21% Similarity=0.236 Sum_probs=75.2
Q ss_pred CCCeeeeecC------chhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCC
Q psy10250 232 KVDEVDIVIQ------RSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTG 305 (387)
Q Consensus 232 GAdEID~Vin------~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTG 305 (387)
+||.||+=+. ++.-.-++.+.+.+=++++++.++-++.+|+- . +.++....++.+.++|+|+|--+.+
T Consensus 118 ~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~---~---~~~~~~~~a~~l~~~G~d~i~v~nt 191 (300)
T TIGR01037 118 YVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLS---P---NVTDITEIAKAAEEAGADGLTLINT 191 (300)
T ss_pred ccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECC---C---ChhhHHHHHHHHHHcCCCEEEEEcc
Confidence 4898887332 12233357788888888888877544667763 1 3345677788899999999964322
Q ss_pred CCC----------------CCCChhhh-HhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 306 KEK----------------TNATIPAG-IIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 306 f~~----------------~gat~~~~-~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
+.. +|-+.+.. ..-++.++.+++.+ ++.|=+.|||+|.++|.+++ .+|++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~--~ipvi~~GGI~s~~da~~~l-----~~GAd 258 (300)
T TIGR01037 192 LRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV--DIPIIGVGGITSFEDALEFL-----MAGAS 258 (300)
T ss_pred CCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC--CCCEEEECCCCCHHHHHHHH-----HcCCC
Confidence 210 11111111 01124556666654 37788999999999999999 58985
No 44
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.41 E-value=0.014 Score=61.82 Aligned_cols=135 Identities=21% Similarity=0.290 Sum_probs=88.3
Q ss_pred CCceEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccC
Q psy10250 200 DDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGEL 279 (387)
Q Consensus 200 ~~v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L 279 (387)
....|++++ |- .+ +. ...++..++.|+|-| ++|.. .|+-....+-|+.+++..++ ++||. +-.
T Consensus 228 GrL~Vgaav-g~----~~-~~-~~~~~~l~~ag~d~i--~id~a---~G~s~~~~~~i~~ik~~~~~---~~v~a--G~V 290 (495)
T PTZ00314 228 GQLLVGAAI-ST----RP-ED-IERAAALIEAGVDVL--VVDSS---QGNSIYQIDMIKKLKSNYPH---VDIIA--GNV 290 (495)
T ss_pred CCEEEEEEE-CC----CH-HH-HHHHHHHHHCCCCEE--EEecC---CCCchHHHHHHHHHHhhCCC---ceEEE--CCc
Confidence 367777774 53 21 23 677888899999884 44554 68888888888999886543 66666 333
Q ss_pred CChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCC-------hhhhHhHHHHHHHHHHHcC-CCceEeEeccCCCHHHHHHH
Q psy10250 280 KTSENIYCASMTAMFAGSDFIKTSTGKEKTNAT-------IPAGIIMCSAIKHFHKLSG-KKIGLKPAGGISTFEDSVRW 351 (387)
Q Consensus 280 ~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat-------~~~~~~m~~~v~~~~~~~~-~~~gIKasGGIrt~~~a~~~ 351 (387)
.|.+ .++.++++||||||.+.|-+....| .++. .+|....+... ..+.|=+.|||++..++.+-
T Consensus 291 ~t~~----~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~----~ai~~~~~~~~~~~v~vIadGGi~~~~di~kA 362 (495)
T PTZ00314 291 VTAD----QAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQA----SAVYHVARYARERGVPCIADGGIKNSGDICKA 362 (495)
T ss_pred CCHH----HHHHHHHcCCCEEEECCcCCcccccchhccCCCChH----HHHHHHHHHHhhcCCeEEecCCCCCHHHHHHH
Confidence 3544 3466789999999986553322222 2222 23333332222 34778899999999999999
Q ss_pred HHHHHHhcCCCcc
Q psy10250 352 IYLVLIMLGPDWL 364 (387)
Q Consensus 352 i~l~~~~~Ga~w~ 364 (387)
+ .+||+++
T Consensus 363 l-----a~GA~~V 370 (495)
T PTZ00314 363 L-----ALGADCV 370 (495)
T ss_pred H-----HcCCCEE
Confidence 9 5999754
No 45
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=97.41 E-value=0.0058 Score=60.80 Aligned_cols=132 Identities=18% Similarity=0.094 Sum_probs=86.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCeeeeecC----------chhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHH
Q psy10250 215 QYLLETRLHEIELLAKQKVDEVDIVIQ----------RSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSEN 284 (387)
Q Consensus 215 ~~~~e~K~~Ea~~Ai~~GAdEID~Vin----------~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~ 284 (387)
.+..+.=..-++.+.+.|+|.||+=.- .|..+.++.+.+.+-++++++.++-+..+|+=+ +.-.+..+
T Consensus 71 g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~--g~~~~~~~ 148 (319)
T TIGR00737 71 GSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRI--GWDDAHIN 148 (319)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEc--ccCCCcch
Confidence 344455556677777889999998321 133344567888888899988876445666543 22222234
Q ss_pred HHHHHHHHHHcCCCEEEcCCCC-----CCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhc
Q psy10250 285 IYCASMTAMFAGSDFIKTSTGK-----EKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIML 359 (387)
Q Consensus 285 i~~a~~ia~~aGaDfVKTSTGf-----~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~ 359 (387)
....++.+.++|+|+|-- +|. ..+++.. +.++.+++.++ +.|=++|||+|.+++.+++. ..
T Consensus 149 ~~~~a~~l~~~G~d~i~v-h~r~~~~~~~~~~~~-------~~i~~i~~~~~--ipvi~nGgI~~~~da~~~l~----~~ 214 (319)
T TIGR00737 149 AVEAARIAEDAGAQAVTL-HGRTRAQGYSGEANW-------DIIARVKQAVR--IPVIGNGDIFSPEDAKAMLE----TT 214 (319)
T ss_pred HHHHHHHHHHhCCCEEEE-EcccccccCCCchhH-------HHHHHHHHcCC--CcEEEeCCCCCHHHHHHHHH----hh
Confidence 556777888999999943 221 1122233 45666666654 77889999999999999995 46
Q ss_pred CCC
Q psy10250 360 GPD 362 (387)
Q Consensus 360 Ga~ 362 (387)
|++
T Consensus 215 gad 217 (319)
T TIGR00737 215 GCD 217 (319)
T ss_pred CCC
Confidence 664
No 46
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=97.41 E-value=0.01 Score=59.83 Aligned_cols=128 Identities=17% Similarity=0.153 Sum_probs=78.6
Q ss_pred CCCeeee---ecCchhhhcCCh-hHHHHHHHHHHHHhC-------CCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEE
Q psy10250 232 KVDEVDI---VIQRSLVLNNQW-PELFSEVKQMKEKCG-------EKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 300 (387)
Q Consensus 232 GAdEID~---Vin~~~lk~g~~-~~v~~Ei~~v~~~~~-------~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfV 300 (387)
.||-|.+ ..|...+..++. +.+.+=+++|++... -+..+|+= +.+ +.+++...++.+.++|+|.|
T Consensus 166 ~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLs---P~~-~~~~i~~ia~~~~~~GadGi 241 (335)
T TIGR01036 166 LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIA---PDL-TESDLEDIADSLVELGIDGV 241 (335)
T ss_pred hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeC---CCC-CHHHHHHHHHHHHHhCCcEE
Confidence 4776554 344433333433 334444566665543 22444442 234 44678889999999999987
Q ss_pred Ec---------------CCCCCCCCCC-hhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCcc
Q psy10250 301 KT---------------STGKEKTNAT-IPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 364 (387)
Q Consensus 301 KT---------------STGf~~~gat-~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~ 364 (387)
-- ++|++ |-+ +..-.+-++-|+.+++..++++.|=++|||.|.+||.+++ .+||+
T Consensus 242 ~l~NT~~~~~~~~~~~~~~~~G--GlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l-----~aGA~-- 312 (335)
T TIGR01036 242 IATNTTVSRSLVQGPKNSDETG--GLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKI-----RAGAS-- 312 (335)
T ss_pred EEECCCCccccccCccccCCCC--cccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHH-----HcCCc--
Confidence 52 11222 111 1122233456777777778889999999999999999999 58984
Q ss_pred CCCcceeeccc
Q psy10250 365 NKDLFRIGASS 375 (387)
Q Consensus 365 ~~~~~RIGtSs 375 (387)
..=+||.-
T Consensus 313 ---~Vqv~ta~ 320 (335)
T TIGR01036 313 ---LLQIYSGF 320 (335)
T ss_pred ---HHHhhHHH
Confidence 34466653
No 47
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=97.29 E-value=0.019 Score=59.26 Aligned_cols=143 Identities=13% Similarity=0.167 Sum_probs=87.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCCeeeee---cC------chhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHH
Q psy10250 214 GQYLLETRLHEIELLAKQKVDEVDIV---IQ------RSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSEN 284 (387)
Q Consensus 214 G~~~~e~K~~Ea~~Ai~~GAdEID~V---in------~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~ 284 (387)
|....+.=..-++.+-+.|||-||+= +| .|.....+.+.+.+=++++++...-++.+|+= ..+ +.
T Consensus 108 g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~---p~~---~~ 181 (420)
T PRK08318 108 VECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLT---PNI---TD 181 (420)
T ss_pred cCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcC---CCc---cc
Confidence 44234444455555566799998873 22 11222346677777778887766544677763 333 23
Q ss_pred HHHHHHHHHHcCCCEEE--------c---------------CCCCCC-CCCChhhhHhHHHHHHHHHHHcC-CCceEeEe
Q psy10250 285 IYCASMTAMFAGSDFIK--------T---------------STGKEK-TNATIPAGIIMCSAIKHFHKLSG-KKIGLKPA 339 (387)
Q Consensus 285 i~~a~~ia~~aGaDfVK--------T---------------STGf~~-~gat~~~~~~m~~~v~~~~~~~~-~~~gIKas 339 (387)
+...++.+.++|+|.|- . +|+++. .|... -.+-++.|+.+++.++ +++.|=++
T Consensus 182 ~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~--~p~~l~~v~~~~~~~~~~~ipIig~ 259 (420)
T PRK08318 182 IREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAV--KPIALNMVAEIARDPETRGLPISGI 259 (420)
T ss_pred HHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhh--hHHHHHHHHHHHhccccCCCCEEee
Confidence 66777889999999876 1 122211 11111 0112356667766654 37889999
Q ss_pred ccCCCHHHHHHHHHHHHHhcCCCccCCCcceeecc
Q psy10250 340 GGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 374 (387)
Q Consensus 340 GGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtS 374 (387)
|||.|.+||++|+ .+||+ ..=||+.
T Consensus 260 GGI~s~~da~e~i-----~aGA~-----~Vqi~ta 284 (420)
T PRK08318 260 GGIETWRDAAEFI-----LLGAG-----TVQVCTA 284 (420)
T ss_pred cCcCCHHHHHHHH-----HhCCC-----hheeeee
Confidence 9999999999999 59985 4445554
No 48
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=97.25 E-value=0.0078 Score=60.52 Aligned_cols=126 Identities=17% Similarity=0.182 Sum_probs=75.5
Q ss_pred HHHHHHHHHCCCCeeeeecCchh--hh---cCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcC
Q psy10250 222 LHEIELLAKQKVDEVDIVIQRSL--VL---NNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAG 296 (387)
Q Consensus 222 ~~Ea~~Ai~~GAdEID~Vin~~~--lk---~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aG 296 (387)
..++.+.+ +|+-+++=+|... .. .++|+.+.+.|+.+++...-|+.+|. ++.-.+ ...++.+.++|
T Consensus 133 ~~~~i~~i--~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~---~g~g~~----~~~a~~L~~aG 203 (333)
T TIGR02151 133 AQEAIDMI--EADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIVKE---VGFGIS----KEVAKLLADAG 203 (333)
T ss_pred HHHHHHHh--cCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEEEe---cCCCCC----HHHHHHHHHcC
Confidence 34444444 5666555555322 11 23466667889999988754577883 343223 34567788999
Q ss_pred CCEEEcCCCCCCCCCChhh---------------hHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCC
Q psy10250 297 SDFIKTSTGKEKTNATIPA---------------GIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGP 361 (387)
Q Consensus 297 aDfVKTSTGf~~~gat~~~---------------~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga 361 (387)
+|+|--|.+.+...+.+|. ..-..+.++..++ ...++.|=++||||+..++.+.+ .+|+
T Consensus 204 vd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~-~~~~ipVIasGGI~~~~di~kaL-----alGA 277 (333)
T TIGR02151 204 VSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRS-DAPDAPIIASGGLRTGLDVAKAI-----ALGA 277 (333)
T ss_pred CCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHh-cCCCCeEEEECCCCCHHHHHHHH-----HhCC
Confidence 9999987543221111111 0112234444433 23468899999999999999999 4898
Q ss_pred C
Q psy10250 362 D 362 (387)
Q Consensus 362 ~ 362 (387)
+
T Consensus 278 d 278 (333)
T TIGR02151 278 D 278 (333)
T ss_pred C
Confidence 5
No 49
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=97.24 E-value=0.013 Score=58.71 Aligned_cols=133 Identities=15% Similarity=0.099 Sum_probs=86.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCeeeeec----------CchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCCh
Q psy10250 213 SGQYLLETRLHEIELLAKQKVDEVDIVI----------QRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTS 282 (387)
Q Consensus 213 ~G~~~~e~K~~Ea~~Ai~~GAdEID~Vi----------n~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~ 282 (387)
+|.++.+. ..-++.+.+.|+|.||+=+ +.|..+-.+.+.+.+=++++++++.-+..+|+- .+.-.+.
T Consensus 72 ~g~~~~~~-~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR--~G~~~~~ 148 (321)
T PRK10415 72 AGSDPKEM-ADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIR--TGWAPEH 148 (321)
T ss_pred eCCCHHHH-HHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEE--ccccCCc
Confidence 45555443 4445667778999999632 123444457888888889998887433455554 4544333
Q ss_pred HHHHHHHHHHHHcCCCEEEcCCCCC-----CCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHH
Q psy10250 283 ENIYCASMTAMFAGSDFIKTSTGKE-----KTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLI 357 (387)
Q Consensus 283 e~i~~a~~ia~~aGaDfVKTSTGf~-----~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~ 357 (387)
++....++.+.++|+|+| |-+|-. .+.+.. +.|+.+++.+ ++.|=++|||+|.+++..+++
T Consensus 149 ~~~~~~a~~le~~G~d~i-~vh~rt~~~~~~G~a~~-------~~i~~ik~~~--~iPVI~nGgI~s~~da~~~l~---- 214 (321)
T PRK10415 149 RNCVEIAQLAEDCGIQAL-TIHGRTRACLFNGEAEY-------DSIRAVKQKV--SIPVIANGDITDPLKARAVLD---- 214 (321)
T ss_pred chHHHHHHHHHHhCCCEE-EEecCccccccCCCcCh-------HHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHh----
Confidence 456677888899999999 333321 122333 3555666554 477888999999999999995
Q ss_pred hcCCC
Q psy10250 358 MLGPD 362 (387)
Q Consensus 358 ~~Ga~ 362 (387)
..|++
T Consensus 215 ~~gad 219 (321)
T PRK10415 215 YTGAD 219 (321)
T ss_pred ccCCC
Confidence 46765
No 50
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=97.23 E-value=0.016 Score=56.54 Aligned_cols=184 Identities=17% Similarity=0.132 Sum_probs=121.9
Q ss_pred cccccC--CCCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEe---
Q psy10250 134 IDLTTL--SGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVA--- 208 (387)
Q Consensus 134 ID~T~L--~~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVv--- 208 (387)
+||-+- +|..-.++++..++++. +-++.+|...|-.++.....-. .++.+..=.
T Consensus 29 ~DhGv~~g~p~~gl~d~e~~v~~v~----------------~~g~dav~~~~G~~~~~~~~y~-----~dvplivkl~~~ 87 (265)
T COG1830 29 MDHGVEHGNPIEGLEDPENIVAKVA----------------EAGADAVAMTPGIARSVHRGYA-----HDVPLIVKLNGS 87 (265)
T ss_pred cccccccCCCcccccCHHHHHHHHH----------------hcCCCEEEecHhHHhhcCcccc-----CCcCEEEEeccc
Confidence 455543 36666778888888887 4577888888866665544332 123222111
Q ss_pred --cCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEee---------c
Q psy10250 209 --AGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAV---------G 277 (387)
Q Consensus 209 --igFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt---------~ 277 (387)
+.+|. .-.+.+...++|+.+|||-+=+.||+|.-- -.+-.+++.++++.|++ .-+=++++. .
T Consensus 88 t~l~~~~---~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~---e~~~i~~~~~v~~~a~~-~Gmp~v~~~YpRg~~~~~~ 160 (265)
T COG1830 88 TSLSPDP---NDQVLVATVEDAIRLGADAVGATVYVGSET---EREMIENISQVVEDAHE-LGMPLVAWAYPRGPAIKDE 160 (265)
T ss_pred cccCCCc---ccceeeeeHHHHHhCCCcEEEEEEecCCcc---hHHHHHHHHHHHHHHHH-cCCceEEEEeccCCccccc
Confidence 24444 556677889999999999999999998543 35667788888888875 223344432 1
Q ss_pred -cCCChHHHHHHHHHHHHcCCCEEEcC-CCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCC--HHHHHHHHH
Q psy10250 278 -ELKTSENIYCASMTAMFAGSDFIKTS-TGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGIST--FEDSVRWIY 353 (387)
Q Consensus 278 -~L~t~e~i~~a~~ia~~aGaDfVKTS-TGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt--~~~a~~~i~ 353 (387)
.+ +.+.+..|++++.+.|||+|||. ||- ++ .-+...+..+ ++|=.|||=++ .++++++..
T Consensus 161 ~~~-d~~~v~~aaRlaaelGADIiK~~ytg~------~e-------~F~~vv~~~~--vpVviaGG~k~~~~~~~l~~~~ 224 (265)
T COG1830 161 YHR-DADLVGYAARLAAELGADIIKTKYTGD------PE-------SFRRVVAACG--VPVVIAGGPKTETEREFLEMVT 224 (265)
T ss_pred ccc-cHHHHHHHHHHHHHhcCCeEeecCCCC------hH-------HHHHHHHhCC--CCEEEeCCCCCCChHHHHHHHH
Confidence 23 45678889999999999999983 332 11 2223333444 89999999987 677888876
Q ss_pred HHHHhcCCC
Q psy10250 354 LVLIMLGPD 362 (387)
Q Consensus 354 l~~~~~Ga~ 362 (387)
.+.+. |+.
T Consensus 225 ~ai~a-Ga~ 232 (265)
T COG1830 225 AAIEA-GAM 232 (265)
T ss_pred HHHHc-cCc
Confidence 65554 763
No 51
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=97.17 E-value=0.02 Score=54.84 Aligned_cols=122 Identities=19% Similarity=0.204 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHCCCCeeeeecC----------chhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHH
Q psy10250 218 LETRLHEIELLAKQKVDEVDIVIQ----------RSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYC 287 (387)
Q Consensus 218 ~e~K~~Ea~~Ai~~GAdEID~Vin----------~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~ 287 (387)
.+.-..-++.+ +.+++.||+-+- .|..+-.+.+.+.+-++++++ ++-++.+|+=+... ++...
T Consensus 84 ~~~~~~aa~~~-~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~~-----~~~~~ 156 (233)
T cd02911 84 LEPLLNAAALV-AKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVD-----VDDEE 156 (233)
T ss_pred HHHHHHHHHHH-hhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCcC-----cCHHH
Confidence 34444444444 446799998543 133333468888888888887 43235566654322 33556
Q ss_pred HHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 288 ASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 288 a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
.++.+.++|+|+|--++++....+.. +.|+.++ .++.|=+.|||.|.+++.+++ ..|++
T Consensus 157 la~~l~~aG~d~ihv~~~~~g~~ad~-------~~I~~i~----~~ipVIgnGgI~s~eda~~~l-----~~GaD 215 (233)
T cd02911 157 LARLIEKAGADIIHVDAMDPGNHADL-------KKIRDIS----TELFIIGNNSVTTIESAKEMF-----SYGAD 215 (233)
T ss_pred HHHHHHHhCCCEEEECcCCCCCCCcH-------HHHHHhc----CCCEEEEECCcCCHHHHHHHH-----HcCCC
Confidence 77888999999998888875433433 3444442 357788899999999999999 47885
No 52
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=97.17 E-value=0.014 Score=58.42 Aligned_cols=117 Identities=17% Similarity=0.176 Sum_probs=72.0
Q ss_pred CCCeeeeecCchhh-----hcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCC
Q psy10250 232 KVDEVDIVIQRSLV-----LNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGK 306 (387)
Q Consensus 232 GAdEID~Vin~~~l-----k~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf 306 (387)
+||-+++=+|...- -..+|+.+.+.|+.+++...-|+.+|. ++.=.+. ..++.+.++|+|+|--|.+
T Consensus 140 ~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPVivK~---~g~g~s~----~~a~~l~~~Gvd~I~vsG~- 211 (326)
T cd02811 140 EADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPVIVKE---VGFGISR----ETAKRLADAGVKAIDVAGA- 211 (326)
T ss_pred CCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEe---cCCCCCH----HHHHHHHHcCCCEEEECCC-
Confidence 56666665554221 123466677899999987754567774 3331132 3456778999999987642
Q ss_pred CCCC-C--------Ch---------hhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 307 EKTN-A--------TI---------PAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 307 ~~~g-a--------t~---------~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
++.+ + .. +-..-..+.++..++..+ ++.|=++||||+..++.+.+ .+||+
T Consensus 212 GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~-~ipIiasGGIr~~~dv~kal-----~lGAd 279 (326)
T cd02811 212 GGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP-DLPLIASGGIRNGLDIAKAL-----ALGAD 279 (326)
T ss_pred CCCcccccccccccccccccccccccccccHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHH-----HhCCC
Confidence 2210 0 00 001112245555555543 68899999999999999999 48984
No 53
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=97.13 E-value=0.012 Score=58.71 Aligned_cols=153 Identities=11% Similarity=0.085 Sum_probs=89.2
Q ss_pred ceEEEEecCCCCCCCCHHHHHHHHHHHHHCC-CCeeeeec---Cchh--hhcCChhHHHHHHHHHHHHhCCCcceEEEEe
Q psy10250 202 VKVASVAAGFPSGQYLLETRLHEIELLAKQK-VDEVDIVI---QRSL--VLNNQWPELFSEVKQMKEKCGEKIHMKTILA 275 (387)
Q Consensus 202 v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~G-AdEID~Vi---n~~~--lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlE 275 (387)
+-++++ .|+..+... .-++..-+.| ||-|++=+ |... -...+.+.+.+=+++|++....+..+|+=.
T Consensus 94 pvI~Si-~G~~~~~~~-----~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp- 166 (310)
T PRK02506 94 PHFLSV-VGLSPEETH-----TILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYFTKPLGVKLPP- 166 (310)
T ss_pred CEEEEE-EeCcHHHHH-----HHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhcCCccEEecCC-
Confidence 445666 365543332 2233332346 88766522 2211 012245666666677777654345556543
Q ss_pred eccCCChHHHHHHHHHHHHcCCCEEEcCC----CC---------------CCCCCC-hhhhHhHHHHHHHHHHHcCCCce
Q psy10250 276 VGELKTSENIYCASMTAMFAGSDFIKTST----GK---------------EKTNAT-IPAGIIMCSAIKHFHKLSGKKIG 335 (387)
Q Consensus 276 t~~L~t~e~i~~a~~ia~~aGaDfVKTST----Gf---------------~~~gat-~~~~~~m~~~v~~~~~~~~~~~g 335 (387)
.+ +..++.+++..+.+.|+++|.|-. |. +.+|.+ +..-.+-++.|+.+++.++.++.
T Consensus 167 --~~-~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ip 243 (310)
T PRK02506 167 --YF-DIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQ 243 (310)
T ss_pred --CC-CHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCC
Confidence 34 457788888888888888866532 21 001111 11111223566677777777899
Q ss_pred EeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeecc
Q psy10250 336 LKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 374 (387)
Q Consensus 336 IKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtS 374 (387)
|=++|||.|.+||.+|+ .+||+ ..=+||+
T Consensus 244 Iig~GGI~s~~da~e~i-----~aGA~-----~Vqv~ta 272 (310)
T PRK02506 244 IIGTGGVKTGRDAFEHI-----LCGAS-----MVQVGTA 272 (310)
T ss_pred EEEECCCCCHHHHHHHH-----HcCCC-----HHhhhHH
Confidence 99999999999999999 69984 3445554
No 54
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=97.05 E-value=0.057 Score=52.62 Aligned_cols=199 Identities=11% Similarity=0.065 Sum_probs=126.5
Q ss_pred CCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEE-CCccHHHHHH---HhhhcCCCCCceEEEEecCCCCCCCC
Q psy10250 142 DDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCV-YPARVVDVIK---VLDRENARDDVKVASVAAGFPSGQYL 217 (387)
Q Consensus 142 ~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV-~P~~v~~a~~---~L~~~~~~~~v~v~tVvigFP~G~~~ 217 (387)
..|.++..++++.-. +.|+.-+-+ +|...+.-.+ .+... +...++.+..
T Consensus 18 ~~s~~~k~~i~~~L~----------------~~Gv~~IEvG~P~~~~~~~~~~~~l~~~--~~~~~v~~~~--------- 70 (262)
T cd07948 18 FFDTEDKIEIAKALD----------------AFGVDYIELTSPAASPQSRADCEAIAKL--GLKAKILTHI--------- 70 (262)
T ss_pred CCCHHHHHHHHHHHH----------------HcCCCEEEEECCCCCHHHHHHHHHHHhC--CCCCcEEEEe---------
Confidence 356677777766655 567777766 5766664433 23221 1224443331
Q ss_pred HHHHHHHHHHHHHCCCCeeeeecCchhh-----hcCChhHHHHHHHHHHHHhCC-CcceEEEEeeccCCChHHHHHHHHH
Q psy10250 218 LETRLHEIELLAKQKVDEVDIVIQRSLV-----LNNQWPELFSEVKQMKEKCGE-KIHMKTILAVGELKTSENIYCASMT 291 (387)
Q Consensus 218 ~e~K~~Ea~~Ai~~GAdEID~Vin~~~l-----k~g~~~~v~~Ei~~v~~~~~~-~~~lKvIlEt~~L~t~e~i~~a~~i 291 (387)
......++.|++.|++.|.+++..+-. .....++..+.+..+++.++. +..+-+-+|...-.+++.+.+.++.
T Consensus 71 -r~~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~ 149 (262)
T cd07948 71 -RCHMDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRA 149 (262)
T ss_pred -cCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHH
Confidence 234457899999999999999876532 234567778888888777653 3678888998887677889899999
Q ss_pred HHHcCCCEE--EcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEe--ccCCCHHHHHHHHHHHHHhcCCCccCCC
Q psy10250 292 AMFAGSDFI--KTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPA--GGISTFEDSVRWIYLVLIMLGPDWLNKD 367 (387)
Q Consensus 292 a~~aGaDfV--KTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKas--GGIrt~~~a~~~i~l~~~~~Ga~w~~~~ 367 (387)
+.++|+|-| +-++|. ++|+.+..++..+ ++..+-.+++..= -|-- ...++.-+ ++|++|++..
T Consensus 150 ~~~~g~~~i~l~Dt~G~----~~P~~v~~~~~~~---~~~~~~~i~~H~Hn~~Gla-~an~~~a~-----~aG~~~vd~s 216 (262)
T cd07948 150 VDKLGVNRVGIADTVGI----ATPRQVYELVRTL---RGVVSCDIEFHGHNDTGCA-IANAYAAL-----EAGATHIDTT 216 (262)
T ss_pred HHHcCCCEEEECCcCCC----CCHHHHHHHHHHH---HHhcCCeEEEEECCCCChH-HHHHHHHH-----HhCCCEEEEe
Confidence 999999954 556663 6788776665544 4444434444331 1111 12233333 5999999988
Q ss_pred cceeeccchHHHHH
Q psy10250 368 LFRIGASSLLNNIL 381 (387)
Q Consensus 368 ~~RIGtSs~~~il~ 381 (387)
..=||-.++-.-++
T Consensus 217 ~~GlGeraGn~~~e 230 (262)
T cd07948 217 VLGIGERNGITPLG 230 (262)
T ss_pred ccccccccCCccHH
Confidence 88888876444333
No 55
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=97.03 E-value=0.04 Score=55.96 Aligned_cols=118 Identities=16% Similarity=0.165 Sum_probs=72.9
Q ss_pred CCCeeeeecCch--hhh-cC--ChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCC
Q psy10250 232 KVDEVDIVIQRS--LVL-NN--QWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGK 306 (387)
Q Consensus 232 GAdEID~Vin~~--~lk-~g--~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf 306 (387)
+||-+++=+|.. ... +| +|+.+.+.|+.+++..+-|+.+|.. +.=.+ ...++.+.++|+|+|--|-..
T Consensus 148 ~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~---g~g~s----~~~a~~l~~~Gvd~I~Vsg~G 220 (352)
T PRK05437 148 EADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEV---GFGIS----KETAKRLADAGVKAIDVAGAG 220 (352)
T ss_pred CCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeC---CCCCc----HHHHHHHHHcCCCEEEECCCC
Confidence 667666666652 222 22 4566678999999877545777854 32113 245677888999999875432
Q ss_pred CCCCCChhhhH---------------hHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 307 EKTNATIPAGI---------------IMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 307 ~~~gat~~~~~---------------~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
+...+.++..+ -..+.+..+++.. .++.|=++||||+..++.+++ .+||+
T Consensus 221 Gt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~-~~ipvia~GGI~~~~dv~k~l-----~~GAd 285 (352)
T PRK05437 221 GTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLL-PDLPIIASGGIRNGLDIAKAL-----ALGAD 285 (352)
T ss_pred CCCccchhhhhhhccccccccccccCCHHHHHHHHHHhc-CCCeEEEECCCCCHHHHHHHH-----HcCCC
Confidence 21112121100 1123444444442 468888999999999999999 58985
No 56
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.98 E-value=0.037 Score=57.26 Aligned_cols=119 Identities=26% Similarity=0.357 Sum_probs=79.7
Q ss_pred HHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEE
Q psy10250 221 RLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 300 (387)
Q Consensus 221 K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfV 300 (387)
=..+++.+++.|+|- ++++... |+-..+.+-++.+++..++ +.+|.=. ..|.+ .++.++++|+|+|
T Consensus 154 ~~~~v~~lv~aGvDv--I~iD~a~---g~~~~~~~~v~~ik~~~p~---~~vi~g~--V~T~e----~a~~l~~aGaD~I 219 (404)
T PRK06843 154 TIERVEELVKAHVDI--LVIDSAH---GHSTRIIELVKKIKTKYPN---LDLIAGN--IVTKE----AALDLISVGADCL 219 (404)
T ss_pred HHHHHHHHHhcCCCE--EEEECCC---CCChhHHHHHHHHHhhCCC---CcEEEEe--cCCHH----HHHHHHHcCCCEE
Confidence 457888889999887 4556665 7778888889999987764 3455422 22444 3466788999999
Q ss_pred EcCCCCCCCC---------CChhhhHhHHHHHHHHHHHc-CCCceEeEeccCCCHHHHHHHHHHHHHhcCCCcc
Q psy10250 301 KTSTGKEKTN---------ATIPAGIIMCSAIKHFHKLS-GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 364 (387)
Q Consensus 301 KTSTGf~~~g---------at~~~~~~m~~~v~~~~~~~-~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~ 364 (387)
+- |+++++ ...++. .++.+..+.. ...+.|=+.|||++..++.+.+ .+||+++
T Consensus 220 ~v--G~g~Gs~c~tr~~~g~g~p~l----tai~~v~~~~~~~~vpVIAdGGI~~~~Di~KAL-----alGA~aV 282 (404)
T PRK06843 220 KV--GIGPGSICTTRIVAGVGVPQI----TAICDVYEVCKNTNICIIADGGIRFSGDVVKAI-----AAGADSV 282 (404)
T ss_pred EE--CCCCCcCCcceeecCCCCChH----HHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHH-----HcCCCEE
Confidence 94 655432 212222 2333333333 2357788999999999999999 5999643
No 57
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=96.96 E-value=0.055 Score=54.79 Aligned_cols=188 Identities=10% Similarity=0.024 Sum_probs=113.5
Q ss_pred CCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCcc-HHHHHHHhhhcCCCCCceEEEEe-cC---CCCCCCC
Q psy10250 143 DTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPAR-VVDVIKVLDRENARDDVKVASVA-AG---FPSGQYL 217 (387)
Q Consensus 143 ~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~-v~~a~~~L~~~~~~~~v~v~tVv-ig---FP~G~~~ 217 (387)
..-++++.++.++. ..+..+|-+.|.| ++.+..... +++.-++ +- .| .+.|..+
T Consensus 46 ~~l~~~K~lv~~~l----------------~~~asaILld~~yG~~a~~~~~~----~~GLil~-~e~tg~d~t~~gr~~ 104 (340)
T PRK12858 46 TDLVDFKLAVSEAL----------------TPYASAILLDPEYGLPAAKVRDP----NCGLLLS-YEKTGYDATAPGRLP 104 (340)
T ss_pred hhHHHHHHHHHHHH----------------hhCCCEEEEccccChhhhcccCC----CCCeEEE-ecccccccCCCCCCc
Confidence 36677778888887 3356899999977 554422222 2454433 20 02 3344344
Q ss_pred HHHHHHHHHHHHHCCCCeeeeecCchhhhcCCh----hHHHHHHHHHHHHhCCCcceEEEEe--eccC------------
Q psy10250 218 LETRLHEIELLAKQKVDEVDIVIQRSLVLNNQW----PELFSEVKQMKEKCGEKIHMKTILA--VGEL------------ 279 (387)
Q Consensus 218 ~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~----~~v~~Ei~~v~~~~~~~~~lKvIlE--t~~L------------ 279 (387)
...-..-++++++.|||-+=+-++++ ..+. +.-.+.+.+|.+.|+. --+=+++| +-..
T Consensus 105 ~~~~~~sve~a~~~GAdAVk~lv~~~---~d~~~~~~~~~~~~l~rv~~ec~~-~giPlllE~l~y~~~~~~~~~~~~a~ 180 (340)
T PRK12858 105 DLLDNWSVRRIKEAGADAVKLLLYYR---PDEDDAINDRKHAFVERVGAECRA-NDIPFFLEPLTYDGKGSDKKAEEFAK 180 (340)
T ss_pred cccccccHHHHHHcCCCEEEEEEEeC---CCcchHHHHHHHHHHHHHHHHHHH-cCCceEEEEeccCCCccccccccccc
Confidence 44444557899999999999999998 2212 2444578899999975 23556777 2111
Q ss_pred CChHHHHHHHHHHHH--cCCCEEEcC-CC-------CCCC--CCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHH
Q psy10250 280 KTSENIYCASMTAMF--AGSDFIKTS-TG-------KEKT--NATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFED 347 (387)
Q Consensus 280 ~t~e~i~~a~~ia~~--aGaDfVKTS-TG-------f~~~--gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~ 347 (387)
..++.|..|++++.+ .|+|.+|+. +| |+.. --|.+... +..+...+.. +.--|=.|||+ +.++
T Consensus 181 ~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~---~~f~~~~~a~-~~P~vvlsgG~-~~~~ 255 (340)
T PRK12858 181 VKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAF---KLFREQSDAT-DLPFIFLSAGV-SPEL 255 (340)
T ss_pred cCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHH---HHHHHHHhhC-CCCEEEECCCC-CHHH
Confidence 135789999999995 999999993 32 2110 01222111 1222223332 33345668887 7788
Q ss_pred HHHHHHHHHHhcCC
Q psy10250 348 SVRWIYLVLIMLGP 361 (387)
Q Consensus 348 a~~~i~l~~~~~Ga 361 (387)
.++++..+.+ .|+
T Consensus 256 f~~~l~~A~~-aGa 268 (340)
T PRK12858 256 FRRTLEFACE-AGA 268 (340)
T ss_pred HHHHHHHHHH-cCC
Confidence 8888876655 676
No 58
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=96.92 E-value=0.047 Score=54.53 Aligned_cols=131 Identities=13% Similarity=0.054 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeeec--------Cc--hhhhcCChhHHHHHHHHHHHHhCC--CcceEEEEeeccCCChH
Q psy10250 216 YLLETRLHEIELLAKQKVDEVDIVI--------QR--SLVLNNQWPELFSEVKQMKEKCGE--KIHMKTILAVGELKTSE 283 (387)
Q Consensus 216 ~~~e~K~~Ea~~Ai~~GAdEID~Vi--------n~--~~lk~g~~~~v~~Ei~~v~~~~~~--~~~lKvIlEt~~L~t~e 283 (387)
+..+.-..-|+.+.+.|+|+||+=+ .. |.-+.++.+.+.+=++++++++++ ++.+|+=+ +.- +.+
T Consensus 72 ~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~--g~~-~~~ 148 (312)
T PRK10550 72 QYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRL--GWD-SGE 148 (312)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEEC--CCC-Cch
Confidence 3445555567788889999999631 22 223445788888889999998853 35566544 332 334
Q ss_pred HHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHH
Q psy10250 284 NIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 353 (387)
Q Consensus 284 ~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~ 353 (387)
+....++++.++|+|+|--+.+....+-+.+.+. .+.++.+++.+ ++.|=+.|||.|.++|..++.
T Consensus 149 ~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~--~~~i~~ik~~~--~iPVi~nGdI~t~~da~~~l~ 214 (312)
T PRK10550 149 RKFEIADAVQQAGATELVVHGRTKEDGYRAEHIN--WQAIGEIRQRL--TIPVIANGEIWDWQSAQQCMA 214 (312)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCccCCCCCccc--HHHHHHHHhhc--CCcEEEeCCcCCHHHHHHHHh
Confidence 5678889999999999976654322111111000 14566666664 477888999999999999995
No 59
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=96.89 E-value=0.11 Score=49.03 Aligned_cols=160 Identities=17% Similarity=0.159 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEEC---CccHHHHHHHhhhcCCCCCc--eEEEEecCCCCCCC
Q psy10250 142 DDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVY---PARVVDVIKVLDRENARDDV--KVASVAAGFPSGQY 216 (387)
Q Consensus 142 ~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~---P~~v~~a~~~L~~~~~~~~v--~v~tVvigFP~G~~ 216 (387)
..+.++..+.++.+. +-|+..+=|. |...+..+.+-+.. +.++ -.+||.
T Consensus 18 ~~~~~~~~~~~~a~~----------------~gGi~~iEvt~~~~~~~~~i~~l~~~~--~~~~~iGaGTV~-------- 71 (206)
T PRK09140 18 GITPDEALAHVGALI----------------EAGFRAIEIPLNSPDPFDSIAALVKAL--GDRALIGAGTVL-------- 71 (206)
T ss_pred CCCHHHHHHHHHHHH----------------HCCCCEEEEeCCCccHHHHHHHHHHHc--CCCcEEeEEecC--------
Confidence 348899999999888 5677776663 44444444333322 1122 233332
Q ss_pred CHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcC
Q psy10250 217 LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAG 296 (387)
Q Consensus 217 ~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aG 296 (387)
-..+++.|++.||+= ++ ++.++. |+.+.+... .+-++..+ . |++|+.+ |.+.|
T Consensus 72 ----~~~~~~~a~~aGA~f---iv------sp~~~~---~v~~~~~~~----~~~~~~G~--~-t~~E~~~----A~~~G 124 (206)
T PRK09140 72 ----SPEQVDRLADAGGRL---IV------TPNTDP---EVIRRAVAL----GMVVMPGV--A-TPTEAFA----ALRAG 124 (206)
T ss_pred ----CHHHHHHHHHcCCCE---EE------CCCCCH---HHHHHHHHC----CCcEEccc--C-CHHHHHH----HHHcC
Confidence 345789999999954 32 233433 222222211 24455553 3 5677644 56799
Q ss_pred CCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccch
Q psy10250 297 SDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL 376 (387)
Q Consensus 297 aDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~ 376 (387)
+||||- |......+ +.++.+++..+..+.+=+.||| |.+.+.+|+ .+|+ ..++.+|.
T Consensus 125 ad~vk~---Fpa~~~G~-------~~l~~l~~~~~~~ipvvaiGGI-~~~n~~~~~-----~aGa-------~~vav~s~ 181 (206)
T PRK09140 125 AQALKL---FPASQLGP-------AGIKALRAVLPPDVPVFAVGGV-TPENLAPYL-----AAGA-------AGFGLGSA 181 (206)
T ss_pred CCEEEE---CCCCCCCH-------HHHHHHHhhcCCCCeEEEECCC-CHHHHHHHH-----HCCC-------eEEEEehH
Confidence 999994 32222334 3566666666556999999999 889999999 5898 68887665
Q ss_pred H
Q psy10250 377 L 377 (387)
Q Consensus 377 ~ 377 (387)
+
T Consensus 182 l 182 (206)
T PRK09140 182 L 182 (206)
T ss_pred h
Confidence 4
No 60
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=96.88 E-value=0.016 Score=56.94 Aligned_cols=146 Identities=21% Similarity=0.216 Sum_probs=79.1
Q ss_pred EEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeee---cCchh-hhcCChhHHHHHHHHHHHHhCC-CcceEEEEeecc
Q psy10250 204 VASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIV---IQRSL-VLNNQWPELFSEVKQMKEKCGE-KIHMKTILAVGE 278 (387)
Q Consensus 204 v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~V---in~~~-lk~g~~~~v~~Ei~~v~~~~~~-~~~lKvIlEt~~ 278 (387)
++++ .|++ .....-..+....++.|||-|.+= +|... --.++...+..++.+.+....+ +..+|+= +.
T Consensus 100 i~Si-~~~~---~~~~~d~~~~a~~~~~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL~---p~ 172 (295)
T PF01180_consen 100 IASI-NGDS---EEEIEDWAELAKRLEAGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREAVDIPVFVKLS---PN 172 (295)
T ss_dssp EEEE--TSS---SGHHHHHHHHHHHHHHHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHHHSSEEEEEE----ST
T ss_pred EEEe-ecCC---chhHHHHHHHHHHhcCcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhccCCCEEEEec---CC
Confidence 3444 4666 223333344444455888865552 23321 0112334455555554444322 2444542 23
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEc-CC-CCCC---------------CCCC-hhhhHhHHHHHHHHHHHcCCCceEeEec
Q psy10250 279 LKTSENIYCASMTAMFAGSDFIKT-ST-GKEK---------------TNAT-IPAGIIMCSAIKHFHKLSGKKIGLKPAG 340 (387)
Q Consensus 279 L~t~e~i~~a~~ia~~aGaDfVKT-ST-Gf~~---------------~gat-~~~~~~m~~~v~~~~~~~~~~~gIKasG 340 (387)
+++.+....++++. +.|+|.|-+ .| +... +|-+ +..-.+-++.|+.+++.+++++.|=++|
T Consensus 173 ~~~~~~~~~~~~~~-~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~G 251 (295)
T PF01180_consen 173 FTDIEPFAIAAELA-ADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVG 251 (295)
T ss_dssp SSCHHHHHHHHHHH-THTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEES
T ss_pred CCchHHHHHHHHhh-ccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeC
Confidence 53444455666666 889998872 11 1100 1111 1112234577888899888899999999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCC
Q psy10250 341 GISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 341 GIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
||.|.+||++|+ .+||+
T Consensus 252 GI~s~~da~e~l-----~aGA~ 268 (295)
T PF01180_consen 252 GIHSGEDAIEFL-----MAGAS 268 (295)
T ss_dssp S--SHHHHHHHH-----HHTES
T ss_pred CcCCHHHHHHHH-----HhCCC
Confidence 999999999999 59984
No 61
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.80 E-value=0.025 Score=59.20 Aligned_cols=120 Identities=23% Similarity=0.299 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCE
Q psy10250 220 TRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDF 299 (387)
Q Consensus 220 ~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDf 299 (387)
--..+++.+++.|+|-|- +|... |+-..+.+-|+.+++..++ +-||. +-..|.+ .++.++++|+||
T Consensus 224 ~~~~r~~~L~~aG~d~I~--vd~a~---g~~~~~~~~i~~i~~~~~~---~~vi~--G~v~t~~----~a~~l~~aGad~ 289 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIV--IDSSH---GHSIYVIDSIKEIKKTYPD---LDIIA--GNVATAE----QAKALIDAGADG 289 (450)
T ss_pred hHHHHHHHHHHhCCCEEE--EECCC---CcHhHHHHHHHHHHHhCCC---CCEEE--EeCCCHH----HHHHHHHhCCCE
Confidence 345677888899998754 45543 6778888999999986543 44555 2232555 346678899999
Q ss_pred EEcCCCCCCC-------CCChhhhHhHHHHHHHHHHHc-CCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 300 IKTSTGKEKT-------NATIPAGIIMCSAIKHFHKLS-GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 300 VKTSTGf~~~-------gat~~~~~~m~~~v~~~~~~~-~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
||++-|-+.. |...+.. .++....+.. ..++.|=|.||||+..++.+-+ .+||+
T Consensus 290 i~vg~g~G~~~~t~~~~~~g~p~~----~~i~~~~~~~~~~~vpviadGGi~~~~di~kAl-----a~GA~ 351 (450)
T TIGR01302 290 LRVGIGPGSICTTRIVAGVGVPQI----TAVYDVAEYAAQSGIPVIADGGIRYSGDIVKAL-----AAGAD 351 (450)
T ss_pred EEECCCCCcCCccceecCCCccHH----HHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHH-----HcCCC
Confidence 9986432211 1222222 2333333332 2457899999999999999999 58985
No 62
>PRK04302 triosephosphate isomerase; Provisional
Probab=96.75 E-value=0.13 Score=48.68 Aligned_cols=181 Identities=17% Similarity=0.169 Sum_probs=104.9
Q ss_pred CCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCcc--HHHHHHHhhhcCCCCCceEEEEecCCC---CCC
Q psy10250 141 GDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPAR--VVDVIKVLDRENARDDVKVASVAAGFP---SGQ 215 (387)
Q Consensus 141 ~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~--v~~a~~~L~~~~~~~~v~v~tVvigFP---~G~ 215 (387)
+..|..+..++.++..+ . ...+++. +++.|.| ++.+++. .++++++- +|. .|.
T Consensus 14 ~~~~~~~~~~~~~~~~~-~-----------~~~~~~~-~~~~p~~~~l~~v~~~-------~~i~v~aq--~~~~~~~G~ 71 (223)
T PRK04302 14 PEATGKDALEIAKAAEK-V-----------SKETGVR-IAVAPQALDIRRVAEE-------VDIPVYAQ--HVDPVEPGS 71 (223)
T ss_pred CCCCHHHHHHHHHHHHh-c-----------cccCCCE-EEEECCHHHHHHHHHh-------cCCeEEec--cCCCCCCCC
Confidence 33467777777665542 1 1134443 4454444 5544443 35677654 443 365
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHc
Q psy10250 216 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFA 295 (387)
Q Consensus 216 ~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~a 295 (387)
.+-+.= ++.+.+.|++-+ ++.+-... ...+|+...++.+.. .-+.+|++++.. +++.+ +.+.
T Consensus 72 ~tg~~~---~~~l~~~G~~~v-ii~~ser~------~~~~e~~~~v~~a~~-~Gl~~I~~v~~~---~~~~~----~~~~ 133 (223)
T PRK04302 72 HTGHIL---PEAVKDAGAVGT-LINHSERR------LTLADIEAVVERAKK-LGLESVVCVNNP---ETSAA----AAAL 133 (223)
T ss_pred chhhhH---HHHHHHcCCCEE-EEeccccc------cCHHHHHHHHHHHHH-CCCeEEEEcCCH---HHHHH----HhcC
Confidence 554432 666677899876 33332111 223456666666654 358889888753 45543 3466
Q ss_pred CCCEEE------cCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcc
Q psy10250 296 GSDFIK------TSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLF 369 (387)
Q Consensus 296 GaDfVK------TSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~ 369 (387)
|.|||= .+||.+..+++++.+..+++.++ +. ..++.|=+-|||++.+++..+. ..|+| ..
T Consensus 134 ~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir---~~-~~~~pvi~GggI~~~e~~~~~~-----~~gad-----Gv 199 (223)
T PRK04302 134 GPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVK---KV-NPDVKVLCGAGISTGEDVKAAL-----ELGAD-----GV 199 (223)
T ss_pred CCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHH---hc-cCCCEEEEECCCCCHHHHHHHH-----cCCCC-----EE
Confidence 889884 24444334567765554444443 32 2356777789999999999998 57874 56
Q ss_pred eeeccc
Q psy10250 370 RIGASS 375 (387)
Q Consensus 370 RIGtSs 375 (387)
-+|+.+
T Consensus 200 lVGsa~ 205 (223)
T PRK04302 200 LLASGV 205 (223)
T ss_pred EEehHH
Confidence 788764
No 63
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.75 E-value=0.042 Score=55.14 Aligned_cols=119 Identities=24% Similarity=0.295 Sum_probs=73.4
Q ss_pred HHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEE
Q psy10250 222 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 301 (387)
Q Consensus 222 ~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVK 301 (387)
...++.+++.|++-|.+ |... |+-+.+.+-++.+++..+ .++||. +-..+.+. ++.++++|+|||+
T Consensus 96 ~~~~~~l~eagv~~I~v--d~~~---G~~~~~~~~i~~ik~~~p---~v~Vi~--G~v~t~~~----A~~l~~aGaD~I~ 161 (325)
T cd00381 96 KERAEALVEAGVDVIVI--DSAH---GHSVYVIEMIKFIKKKYP---NVDVIA--GNVVTAEA----ARDLIDAGADGVK 161 (325)
T ss_pred HHHHHHHHhcCCCEEEE--ECCC---CCcHHHHHHHHHHHHHCC---CceEEE--CCCCCHHH----HHHHHhcCCCEEE
Confidence 45677888889886543 3322 555677778888887653 377777 33335442 4567789999999
Q ss_pred cCCCCCC-------CCCChhhhHhHHHHHHHHHHHcC-CCceEeEeccCCCHHHHHHHHHHHHHhcCCCc
Q psy10250 302 TSTGKEK-------TNATIPAGIIMCSAIKHFHKLSG-KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 363 (387)
Q Consensus 302 TSTGf~~-------~gat~~~~~~m~~~v~~~~~~~~-~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w 363 (387)
.+-|=+. .|...+.. ..+....+... .++.|=++|||++..++.+.+ .+|++.
T Consensus 162 vg~g~G~~~~t~~~~g~g~p~~----~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAl-----a~GA~~ 222 (325)
T cd00381 162 VGIGPGSICTTRIVTGVGVPQA----TAVADVAAAARDYGVPVIADGGIRTSGDIVKAL-----AAGADA 222 (325)
T ss_pred ECCCCCcCcccceeCCCCCCHH----HHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHH-----HcCCCE
Confidence 6311000 01111221 23333333322 246777999999999999999 589864
No 64
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.65 E-value=0.055 Score=54.79 Aligned_cols=127 Identities=13% Similarity=0.070 Sum_probs=79.9
Q ss_pred HHHHHHHCCCCeeeeecCchhh-----------hc--------CChhHHHHHHHHHHHHhC----CCcceEEEEeec---
Q psy10250 224 EIELLAKQKVDEVDIVIQRSLV-----------LN--------NQWPELFSEVKQMKEKCG----EKIHMKTILAVG--- 277 (387)
Q Consensus 224 Ea~~Ai~~GAdEID~Vin~~~l-----------k~--------g~~~~v~~Ei~~v~~~~~----~~~~lKvIlEt~--- 277 (387)
-|+.|.+.|.|-||+=.--|+| .+ ++...+.+=+++|+++++ .+.++++=+...
T Consensus 149 aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~ 228 (353)
T cd04735 149 ATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPE 228 (353)
T ss_pred HHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECccccc
Confidence 4678888999999986422111 11 222345566778888887 334455544322
Q ss_pred --cCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCC-CChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHH
Q psy10250 278 --ELKTSENIYCASMTAMFAGSDFIKTSTGKEKTN-ATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 353 (387)
Q Consensus 278 --~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~g-at~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~ 353 (387)
-+ +.++-...++...++|+|||-.|.|..... ..... .....++.+++....++.|=+.|||+|.+++.+++.
T Consensus 229 ~~g~-~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~--~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~ 304 (353)
T cd04735 229 EPGI-RMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRD--DNQTIMELVKERIAGRLPLIAVGSINTPDDALEALE 304 (353)
T ss_pred CCCC-CHHHHHHHHHHHHHcCCCEEEeccCccccccccCCc--chHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHH
Confidence 13 356677788888999999999888742111 00000 012334555666555677889999999999999995
No 65
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.62 E-value=0.018 Score=56.57 Aligned_cols=93 Identities=20% Similarity=0.205 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcC
Q psy10250 252 ELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSG 331 (387)
Q Consensus 252 ~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~ 331 (387)
.+.+-++++++.++. ..|+.+|..-+ ||. ..|+++|+|+|-- .+.+++.++. .|+.. +...
T Consensus 167 ~i~~~v~~~k~~~p~--~~~I~VEv~tl---eea----~~A~~~GaDiI~L------Dn~~~e~l~~---~v~~~-~~~~ 227 (273)
T PRK05848 167 DLKEFIQHARKNIPF--TAKIEIECESL---EEA----KNAMNAGADIVMC------DNMSVEEIKE---VVAYR-NANY 227 (273)
T ss_pred cHHHHHHHHHHhCCC--CceEEEEeCCH---HHH----HHHHHcCCCEEEE------CCCCHHHHHH---HHHHh-hccC
Confidence 445566666665553 37899999855 444 3467899999972 2345654333 33322 1223
Q ss_pred CCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccch
Q psy10250 332 KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL 376 (387)
Q Consensus 332 ~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~ 376 (387)
+++.|=+|||| |.+++.+|. .+|+ +.|.++++
T Consensus 228 ~~~~ieAsGgI-t~~ni~~ya-----~~Gv-------D~IsvG~l 259 (273)
T PRK05848 228 PHVLLEASGNI-TLENINAYA-----KSGV-------DAISSGSL 259 (273)
T ss_pred CCeEEEEECCC-CHHHHHHHH-----HcCC-------CEEEeChh
Confidence 57889999999 999999999 6998 58877764
No 66
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=96.57 E-value=0.59 Score=47.20 Aligned_cols=205 Identities=14% Similarity=0.052 Sum_probs=114.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEecCCCCCCCCCCCcccccchhccccchhhhhhHHHHHHhhcccccc----cCCC-CCCHH
Q psy10250 72 TSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEFIDLT----TLSG-DDTEA 146 (387)
Q Consensus 72 ~~e~i~~a~~~a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ID~T----~L~~-~~T~~ 146 (387)
+.+++...+....++|+|.|--+-|-+.+|.+..... ...++ .++++++.+.+..+ +|.| ..+.+
T Consensus 22 ~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~------~~~~~----~e~i~~~~~~~~~~~~~~ll~pg~~~~~ 91 (333)
T TIGR03217 22 TIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGF------SAHTD----LEYIEAAADVVKRAKVAVLLLPGIGTVH 91 (333)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCC------CCCCh----HHHHHHHHHhCCCCEEEEEeccCccCHH
Confidence 5678888888889999999998655433444332111 11122 22344444444433 3333 34667
Q ss_pred HHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEe-cCCCCCCCCHHHHHHHH
Q psy10250 147 VVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVA-AGFPSGQYLLETRLHEI 225 (387)
Q Consensus 147 ~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVv-igFP~G~~~~e~K~~Ea 225 (387)
+++...+.-+ ..--|+++.+....+.+.++-.. ..+..+...+ -.| ..+.+.=+..+
T Consensus 92 dl~~a~~~gv------------------d~iri~~~~~e~d~~~~~i~~ak-~~G~~v~~~l~~s~---~~~~e~l~~~a 149 (333)
T TIGR03217 92 DLKAAYDAGA------------------RTVRVATHCTEADVSEQHIGMAR-ELGMDTVGFLMMSH---MTPPEKLAEQA 149 (333)
T ss_pred HHHHHHHCCC------------------CEEEEEeccchHHHHHHHHHHHH-HcCCeEEEEEEccc---CCCHHHHHHHH
Confidence 7654433322 33345555544444444332110 1234432221 122 34556666677
Q ss_pred HHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCC-
Q psy10250 226 ELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTST- 304 (387)
Q Consensus 226 ~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTST- 304 (387)
+.+.+.||+.|=++=-.|.+ ..+.+.+=++.+++..++. +-|+...=++...=..-+..|+++|+++|-+|-
T Consensus 150 ~~~~~~Ga~~i~i~DT~G~~---~P~~v~~~v~~l~~~l~~~----i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~ 222 (333)
T TIGR03217 150 KLMESYGADCVYIVDSAGAM---LPDDVRDRVRALKAVLKPE----TQVGFHAHHNLSLAVANSIAAIEAGATRIDASLR 222 (333)
T ss_pred HHHHhcCCCEEEEccCCCCC---CHHHHHHHHHHHHHhCCCC----ceEEEEeCCCCchHHHHHHHHHHhCCCEEEeecc
Confidence 78888899999555445544 3677778788887765421 334555454444444456779999999999876
Q ss_pred CC--CCCCCChhh
Q psy10250 305 GK--EKTNATIPA 315 (387)
Q Consensus 305 Gf--~~~gat~~~ 315 (387)
|+ +++++.+|.
T Consensus 223 G~G~~aGN~~~E~ 235 (333)
T TIGR03217 223 GLGAGAGNAPLEV 235 (333)
T ss_pred cccccccCccHHH
Confidence 44 445666664
No 67
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=96.54 E-value=0.058 Score=54.20 Aligned_cols=129 Identities=20% Similarity=0.141 Sum_probs=93.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCCeeeee--------c--CchhhhcCChhHHHHHHHHHHHHhC-CCcceEEEEeeccCCCh
Q psy10250 214 GQYLLETRLHEIELLAKQKVDEVDIV--------I--QRSLVLNNQWPELFSEVKQMKEKCG-EKIHMKTILAVGELKTS 282 (387)
Q Consensus 214 G~~~~e~K~~Ea~~Ai~~GAdEID~V--------i--n~~~lk~g~~~~v~~Ei~~v~~~~~-~~~~lKvIlEt~~L~t~ 282 (387)
+.+..+.=..-++.+.+.|+++||+= . ..|+-+-.+++.+.+=+++++++.+ -++.||+=+=.....
T Consensus 74 ~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~-- 151 (323)
T COG0042 74 GGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDD-- 151 (323)
T ss_pred cCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCccc--
Confidence 34444666666778888999999972 2 2466777899999999999999996 346777766443331
Q ss_pred HHHHHHHHHHHHcCCCEEE----c-CCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHH
Q psy10250 283 ENIYCASMTAMFAGSDFIK----T-STGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 353 (387)
Q Consensus 283 e~i~~a~~ia~~aGaDfVK----T-STGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~ 353 (387)
-.-...++++.++|++.+- | .-+| .+.+.. +.|+.+++.++. +-|=+-|+|+|+++|.++++
T Consensus 152 ~~~~~ia~~~~~~g~~~ltVHgRtr~~~y-~~~ad~-------~~I~~vk~~~~~-ipvi~NGdI~s~~~a~~~l~ 218 (323)
T COG0042 152 ILALEIARILEDAGADALTVHGRTRAQGY-LGPADW-------DYIKELKEAVPS-IPVIANGDIKSLEDAKEMLE 218 (323)
T ss_pred ccHHHHHHHHHhcCCCEEEEecccHHhcC-CCccCH-------HHHHHHHHhCCC-CeEEeCCCcCCHHHHHHHHH
Confidence 1234567889999999872 2 1233 223444 578888888776 88999999999999999997
No 68
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=96.53 E-value=0.22 Score=45.65 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=69.7
Q ss_pred HHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEc
Q psy10250 223 HEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKT 302 (387)
Q Consensus 223 ~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKT 302 (387)
..++.+.+.|||-| +++... + . +++.++.+.++. .-+|++++..--.|+++..+ +...|+|||+.
T Consensus 68 ~~~~~~~~aGad~i--~~h~~~---~-~----~~~~~~i~~~~~-~g~~~~v~~~~~~t~~e~~~----~~~~~~d~v~~ 132 (202)
T cd04726 68 LEAEMAFKAGADIV--TVLGAA---P-L----STIKKAVKAAKK-YGKEVQVDLIGVEDPEKRAK----LLKLGVDIVIL 132 (202)
T ss_pred HHHHHHHhcCCCEE--EEEeeC---C-H----HHHHHHHHHHHH-cCCeEEEEEeCCCCHHHHHH----HHHCCCCEEEE
Confidence 45688999999853 223221 1 1 233444444443 23799988333336666643 66679999998
Q ss_pred CCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 303 STGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 303 STGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
..+|.+.....+ ...+.++.+++. ..+.|=+.|||+ .+++.+++ .+|++
T Consensus 133 ~~~~~~~~~~~~---~~~~~i~~~~~~--~~~~i~~~GGI~-~~~i~~~~-----~~Gad 181 (202)
T cd04726 133 HRGIDAQAAGGW---WPEDDLKKVKKL--LGVKVAVAGGIT-PDTLPEFK-----KAGAD 181 (202)
T ss_pred cCcccccccCCC---CCHHHHHHHHhh--cCCCEEEECCcC-HHHHHHHH-----hcCCC
Confidence 666532211111 123456655544 468899999996 99999999 58985
No 69
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=96.53 E-value=0.071 Score=53.81 Aligned_cols=126 Identities=14% Similarity=0.198 Sum_probs=82.2
Q ss_pred HHHHHHHCCCCeeeeecCchhh----hc---------------CChhHHHHHHHHHHHHhCCCcceEEEEeecc-----C
Q psy10250 224 EIELLAKQKVDEVDIVIQRSLV----LN---------------NQWPELFSEVKQMKEKCGEKIHMKTILAVGE-----L 279 (387)
Q Consensus 224 Ea~~Ai~~GAdEID~Vin~~~l----k~---------------g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~-----L 279 (387)
-|+.|.+.|.|.||+=.--|.| ++ ++...+.+=+++|++.++.+.++|+=|-... +
T Consensus 146 AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~ 225 (343)
T cd04734 146 AARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGL 225 (343)
T ss_pred HHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCC
Confidence 4678888999999986532332 12 2235556667888888875456666554332 3
Q ss_pred CChHHHHHHHHHHHHcC-CCEEEcCCCCCCCC-------CC--hhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHH
Q psy10250 280 KTSENIYCASMTAMFAG-SDFIKTSTGKEKTN-------AT--IPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSV 349 (387)
Q Consensus 280 ~t~e~i~~a~~ia~~aG-aDfVKTSTGf~~~g-------at--~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~ 349 (387)
+.++....++...++| +|||-.|.|..... .+ .+.. ...+.++.+++.+ ++.|=++|||+|.+++.
T Consensus 226 -~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ik~~~--~ipvi~~G~i~~~~~~~ 301 (343)
T cd04734 226 -SPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPG-PFLPLAARIKQAV--DLPVFHAGRIRDPAEAE 301 (343)
T ss_pred -CHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcc-hhHHHHHHHHHHc--CCCEEeeCCCCCHHHHH
Confidence 4566777888888998 89999988743211 00 0110 1224556666665 46688899999999999
Q ss_pred HHHH
Q psy10250 350 RWIY 353 (387)
Q Consensus 350 ~~i~ 353 (387)
+++.
T Consensus 302 ~~l~ 305 (343)
T cd04734 302 QALA 305 (343)
T ss_pred HHHH
Confidence 9994
No 70
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=96.53 E-value=0.056 Score=54.63 Aligned_cols=127 Identities=20% Similarity=0.203 Sum_probs=81.9
Q ss_pred HHHHHHHHCCCCeeeeecC----chhhhcC---------------ChhHHHHHHHHHHHHhCCCcceEEEEeec-----c
Q psy10250 223 HEIELLAKQKVDEVDIVIQ----RSLVLNN---------------QWPELFSEVKQMKEKCGEKIHMKTILAVG-----E 278 (387)
Q Consensus 223 ~Ea~~Ai~~GAdEID~Vin----~~~lk~g---------------~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~-----~ 278 (387)
..|+.|.+.|.|-|++-.- ++.++|- +...+.+=+++|+++++.+.++++=|-.. -
T Consensus 141 ~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g 220 (353)
T cd02930 141 RCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGG 220 (353)
T ss_pred HHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCC
Confidence 3467788899999999542 1222222 24566677889999887544555433221 1
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCC-Ch----hhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHH
Q psy10250 279 LKTSENIYCASMTAMFAGSDFIKTSTGKEKTNA-TI----PAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 353 (387)
Q Consensus 279 L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~ga-t~----~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~ 353 (387)
+ +.++-.+.++...++|+|||-.|.||..... +. ... ......+.+++.+ ++.|=+.|+|++.+++..++.
T Consensus 221 ~-~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~-~~~~~~~~ik~~v--~iPVi~~G~i~~~~~a~~~i~ 296 (353)
T cd02930 221 S-TWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRG-AFAWATAKLKRAV--DIPVIASNRINTPEVAERLLA 296 (353)
T ss_pred C-CHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCch-hhHHHHHHHHHhC--CCCEEEcCCCCCHHHHHHHHH
Confidence 3 5566677888888999999999999742111 10 000 1123445566654 466778999999999999994
No 71
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=96.50 E-value=0.11 Score=45.92 Aligned_cols=118 Identities=19% Similarity=0.194 Sum_probs=69.3
Q ss_pred HHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCC
Q psy10250 225 IELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTST 304 (387)
Q Consensus 225 a~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTST 304 (387)
++.+.+.|+|-|.+-..-... .+...+-++.+++.++ .+++++........+.. ...+.|+|+|..+.
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~----~~~~~~~~~~i~~~~~---~~~v~~~~~~~~~~~~~-----~~~~~g~d~i~~~~ 144 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYL----AREDLELIRELREAVP---DVKVVVKLSPTGELAAA-----AAEEAGVDEVGLGN 144 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcH----HHHHHHHHHHHHHhcC---CceEEEEECCCCccchh-----hHHHcCCCEEEEcC
Confidence 678888899887655443322 2334444556665552 25677766555322211 15788999999877
Q ss_pred CCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 305 GKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 305 Gf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
++...+...... .....++..++ ..++.|=++|||++.+++..++. .|++
T Consensus 145 ~~~~~~~~~~~~-~~~~~~~~~~~--~~~~pi~~~GGi~~~~~~~~~~~-----~Gad 194 (200)
T cd04722 145 GGGGGGGRDAVP-IADLLLILAKR--GSKVPVIAGGGINDPEDAAEALA-----LGAD 194 (200)
T ss_pred CcCCCCCccCch-hHHHHHHHHHh--cCCCCEEEECCCCCHHHHHHHHH-----hCCC
Confidence 764332111100 01112333322 24578899999999999999994 6884
No 72
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=96.49 E-value=0.6 Score=45.74 Aligned_cols=94 Identities=17% Similarity=0.120 Sum_probs=62.8
Q ss_pred EEEecCCCCC-CCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChH
Q psy10250 205 ASVAAGFPSG-QYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSE 283 (387)
Q Consensus 205 ~tVvigFP~G-~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e 283 (387)
+.. .+.|.+ ..+.+.-+.-++.+.+.||+.|=+.=-.|.+ ....+++-++.+++..++ +.|+...=++.-
T Consensus 135 ~~~-f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~---~P~~v~~lv~~l~~~~~~-----~~i~~H~Hnd~G 205 (274)
T cd07938 135 STA-FGCPYEGEVPPERVAEVAERLLDLGCDEISLGDTIGVA---TPAQVRRLLEAVLERFPD-----EKLALHFHDTRG 205 (274)
T ss_pred EeE-ecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCcc---CHHHHHHHHHHHHHHCCC-----CeEEEEECCCCC
Confidence 334 477876 4455555666788889999998665445543 477788888888875542 456665554433
Q ss_pred HHHHHHHHHHHcCCCEEEcCC-CCC
Q psy10250 284 NIYCASMTAMFAGSDFIKTST-GKE 307 (387)
Q Consensus 284 ~i~~a~~ia~~aGaDfVKTST-Gf~ 307 (387)
.=..-+..|+++|+|+|-+|. |.|
T Consensus 206 lA~AN~laA~~aGa~~id~t~~GlG 230 (274)
T cd07938 206 QALANILAALEAGVRRFDSSVGGLG 230 (274)
T ss_pred hHHHHHHHHHHhCCCEEEEeccccC
Confidence 333346779999999999877 454
No 73
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=96.47 E-value=0.088 Score=52.76 Aligned_cols=128 Identities=14% Similarity=0.113 Sum_probs=80.6
Q ss_pred HHHHHHHHHCCCCeeeeec--------------C-----chhhhcCChhHHHHHHHHHHHHhCCC--cceEEEEee---c
Q psy10250 222 LHEIELLAKQKVDEVDIVI--------------Q-----RSLVLNNQWPELFSEVKQMKEKCGEK--IHMKTILAV---G 277 (387)
Q Consensus 222 ~~Ea~~Ai~~GAdEID~Vi--------------n-----~~~lk~g~~~~v~~Ei~~v~~~~~~~--~~lKvIlEt---~ 277 (387)
+..|+.|.+.|.|-|++=. | +|.-+.++...+.+=+++|++++++. +-+|+=.+- .
T Consensus 157 ~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~ 236 (336)
T cd02932 157 VAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEG 236 (336)
T ss_pred HHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCC
Confidence 3457788889999999843 1 12222234566778889999988753 234433211 1
Q ss_pred cCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCC--ChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHH
Q psy10250 278 ELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNA--TIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 353 (387)
Q Consensus 278 ~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~ga--t~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~ 353 (387)
-+ +.++..+.++...+.|+|||..|.|-..... .... ....+..+.+++.+ ++.|=+.|||+|.+++.+++.
T Consensus 237 g~-~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~-~~~~~~~~~ir~~~--~iPVi~~G~i~t~~~a~~~l~ 310 (336)
T cd02932 237 GW-DLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGP-GYQVPFAERIRQEA--GIPVIAVGLITDPEQAEAILE 310 (336)
T ss_pred CC-CHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCc-cccHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHH
Confidence 23 4566777788888899999998877321111 1100 01123445566655 467778999999999999994
No 74
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.47 E-value=0.054 Score=57.58 Aligned_cols=125 Identities=20% Similarity=0.221 Sum_probs=81.2
Q ss_pred HHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEE
Q psy10250 222 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 301 (387)
Q Consensus 222 ~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVK 301 (387)
...++..++.|+|-|. ++ .-.|..+.+.+-|+.+++..+. .+.|+- +-..|.+ .++.++++||||||
T Consensus 244 ~~ra~~Lv~aGvd~i~--vd---~a~g~~~~~~~~i~~ir~~~~~--~~~V~a--GnV~t~e----~a~~li~aGAd~I~ 310 (502)
T PRK07107 244 AERVPALVEAGADVLC--ID---SSEGYSEWQKRTLDWIREKYGD--SVKVGA--GNVVDRE----GFRYLAEAGADFVK 310 (502)
T ss_pred HHHHHHHHHhCCCeEe--ec---CcccccHHHHHHHHHHHHhCCC--CceEEe--ccccCHH----HHHHHHHcCCCEEE
Confidence 3456668888988754 34 3456777888899999987753 233333 3232544 45667899999999
Q ss_pred cCCCCCC-------CC---CChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCcc
Q psy10250 302 TSTGKEK-------TN---ATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 364 (387)
Q Consensus 302 TSTGf~~-------~g---at~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~ 364 (387)
-+-|=|. .| +++..+....++.+.+.+..+.++.|=+-||||+.-|..+-+ .+||+++
T Consensus 311 vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAl-----a~GA~~v 378 (502)
T PRK07107 311 VGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLAL-----AMGADFI 378 (502)
T ss_pred ECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHH-----HcCCCee
Confidence 9776541 11 233333333344433434456678899999999999987777 4899754
No 75
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=96.46 E-value=0.094 Score=52.51 Aligned_cols=110 Identities=21% Similarity=0.213 Sum_probs=71.0
Q ss_pred ChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEc-C-CCCCC---------------CCC
Q psy10250 249 QWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKT-S-TGKEK---------------TNA 311 (387)
Q Consensus 249 ~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKT-S-TGf~~---------------~ga 311 (387)
+.+++.+=+++|++...-|+-+|+ ++ +.++|...++.+.++|+|.|-- . |..+. +|-
T Consensus 145 ~~e~l~~l~~~vk~~~~~Pv~vKl---~P---~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGL 218 (310)
T COG0167 145 DPELLEKLLEAVKAATKVPVFVKL---AP---NITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGL 218 (310)
T ss_pred CHHHHHHHHHHHHhcccCceEEEe---CC---CHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCc
Confidence 444555555566655543344443 11 5688999999999999997631 1 22111 111
Q ss_pred C-hhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeecc
Q psy10250 312 T-IPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 374 (387)
Q Consensus 312 t-~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtS 374 (387)
+ +..-.+-++-|+.+++.++.++.|=..|||.|.+||.+++ .+||+ ..-|||.
T Consensus 219 SG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i-----~aGA~-----~vQv~Ta 272 (310)
T COG0167 219 SGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFI-----LAGAS-----AVQVGTA 272 (310)
T ss_pred CcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHH-----HcCCc-----hheeeee
Confidence 1 1111122356777788888899999999999999999999 69985 4556765
No 76
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.46 E-value=0.063 Score=54.07 Aligned_cols=122 Identities=22% Similarity=0.254 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHCCC--CeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEE-eeccCCChHHHHHHHHHHHH
Q psy10250 218 LETRLHEIELLAKQKV--DEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTIL-AVGELKTSENIYCASMTAMF 294 (387)
Q Consensus 218 ~e~K~~Ea~~Ai~~GA--dEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIl-Et~~L~t~e~i~~a~~ia~~ 294 (387)
..-...++...++.|+ |- +++|... |+-+.+.+=|+.+++..++ +-||. |++ |.++ ++.+++
T Consensus 95 ~~~~~~~~~~Lv~ag~~~d~--i~iD~a~---gh~~~~~e~I~~ir~~~p~---~~vi~g~V~---t~e~----a~~l~~ 159 (326)
T PRK05458 95 KDDEYDFVDQLAAEGLTPEY--ITIDIAH---GHSDSVINMIQHIKKHLPE---TFVIAGNVG---TPEA----VRELEN 159 (326)
T ss_pred CHHHHHHHHHHHhcCCCCCE--EEEECCC---CchHHHHHHHHHHHhhCCC---CeEEEEecC---CHHH----HHHHHH
Confidence 3445688888888865 75 4566665 8889999989999987764 33555 444 4443 356778
Q ss_pred cCCCEEEcCCCCCC-------CCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCc
Q psy10250 295 AGSDFIKTSTGKEK-------TNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 363 (387)
Q Consensus 295 aGaDfVKTSTGf~~-------~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w 363 (387)
+|+|+|+-+-|=+. .|...++ ..+.+++.+++.. ++.|=++|||++..|+.+.+ .+|++.
T Consensus 160 aGad~i~vg~~~G~~~~t~~~~g~~~~~--w~l~ai~~~~~~~--~ipVIAdGGI~~~~Di~KaL-----a~GA~a 226 (326)
T PRK05458 160 AGADATKVGIGPGKVCITKIKTGFGTGG--WQLAALRWCAKAA--RKPIIADGGIRTHGDIAKSI-----RFGATM 226 (326)
T ss_pred cCcCEEEECCCCCcccccccccCCCCCc--cHHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHH-----HhCCCE
Confidence 99999995533210 0111110 0123455555543 47788999999999999999 489863
No 77
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=96.37 E-value=0.23 Score=46.92 Aligned_cols=173 Identities=18% Similarity=0.189 Sum_probs=107.4
Q ss_pred cccCCCCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCcc------HHHHHHHhhhcCCCCCceEEEEec
Q psy10250 136 LTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPAR------VVDVIKVLDRENARDDVKVASVAA 209 (387)
Q Consensus 136 ~T~L~~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~------v~~a~~~L~~~~~~~~v~v~tVvi 209 (387)
.|+|.|+-. +++.++..+.. +.|+.++.|-.+. +....+.++.. ++++| +
T Consensus 2 ~~~iDP~k~-e~~~~ia~~v~----------------~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~---~~lPv--i-- 57 (205)
T TIGR01769 2 FTLIDPEKS-DEIEKIAKNAK----------------DAGTDAIMVGGSLGIVESNLDQTVKKIKKI---TNLPV--I-- 57 (205)
T ss_pred ccccCCCcH-HHHHHHHHHHH----------------hcCCCEEEEcCcCCCCHHHHHHHHHHHHhh---cCCCE--E--
Confidence 378899888 88888877777 6788888887553 22233444431 34554 3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHH-HHHHH---HHH----h-------CCCcceEEEE
Q psy10250 210 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFS-EVKQM---KEK----C-------GEKIHMKTIL 274 (387)
Q Consensus 210 gFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~-Ei~~v---~~~----~-------~~~~~lKvIl 274 (387)
=||....... .| .|.++=.+.|.++|..++.. .+..+ ++. . +++..+--+=
T Consensus 58 lfp~~~~~i~-----------~~---aD~~~~~sllns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~ 123 (205)
T TIGR01769 58 LFPGNVNGLS-----------RY---ADAVFFMSLLNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVG 123 (205)
T ss_pred EECCCccccC-----------cC---CCEEEEEEeecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeec
Confidence 3887766543 33 55565567777788777654 33333 211 1 0111122222
Q ss_pred ee---ccCCChHHHHHHHHHHHHcCCC--EEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHH
Q psy10250 275 AV---GELKTSENIYCASMTAMFAGSD--FIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSV 349 (387)
Q Consensus 275 Et---~~L~t~e~i~~a~~ia~~aGaD--fVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~ 349 (387)
++ +.+ ++|++..-+..|...|++ |+.-++|+. ...+++ -|+.+++.+ ++.+=.-|||||.+++.
T Consensus 124 ~a~~ip~~-~~e~~~~~a~aa~~~G~~~i~Le~~sGa~-~~v~~e-------~i~~Vk~~~--~~Pv~vGGGIrs~e~a~ 192 (205)
T TIGR01769 124 KAREIPYN-KPEIAAAYCLAAKYFGMKWVYLEAGSGAS-YPVNPE-------TISLVKKAS--GIPLIVGGGIRSPEIAY 192 (205)
T ss_pred CcccCCCC-CHHHHHHHHHHHHHcCCCEEEEEcCCCCC-CCCCHH-------HHHHHHHhh--CCCEEEeCCCCCHHHHH
Confidence 22 235 578888888888899999 556677873 334443 445555554 47788899999999999
Q ss_pred HHHHHHHHhcCCC
Q psy10250 350 RWIYLVLIMLGPD 362 (387)
Q Consensus 350 ~~i~l~~~~~Ga~ 362 (387)
.++ ..|+|
T Consensus 193 ~l~-----~~GAD 200 (205)
T TIGR01769 193 EIV-----LAGAD 200 (205)
T ss_pred HHH-----HcCCC
Confidence 998 47873
No 78
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.35 E-value=0.043 Score=58.34 Aligned_cols=134 Identities=20% Similarity=0.218 Sum_probs=84.6
Q ss_pred CceEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCC
Q psy10250 201 DVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELK 280 (387)
Q Consensus 201 ~v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~ 280 (387)
...|++.+ |- . ..-..-++..++.|+|- +++|.. .|+-..+.+.++.+++..++ +.+|.=.. .
T Consensus 236 ~l~vgaav-g~----~--~~~~~r~~~l~~ag~d~--i~iD~~---~g~~~~~~~~i~~ik~~~p~---~~vi~g~v-~- 298 (505)
T PLN02274 236 KLLVGAAI-GT----R--ESDKERLEHLVKAGVDV--VVLDSS---QGDSIYQLEMIKYIKKTYPE---LDVIGGNV-V- 298 (505)
T ss_pred CEEEEEEE-cC----C--ccHHHHHHHHHHcCCCE--EEEeCC---CCCcHHHHHHHHHHHHhCCC---CcEEEecC-C-
Confidence 46677763 52 1 11135677788889887 456764 58888889999999987654 45554222 2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChh-------hhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHH
Q psy10250 281 TSENIYCASMTAMFAGSDFIKTSTGKEKTNATIP-------AGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 353 (387)
Q Consensus 281 t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~-------~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~ 353 (387)
|.++ ++.++++|+|+||.|-|-+....|.. ..-.+ ..+..+.+. .++.|=+.|||++..++.+-+
T Consensus 299 t~e~----a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i-~~~~~~~~~--~~vpVIadGGI~~~~di~kAl- 370 (505)
T PLN02274 299 TMYQ----AQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAV-YKVASIAAQ--HGVPVIADGGISNSGHIVKAL- 370 (505)
T ss_pred CHHH----HHHHHHcCcCEEEECCCCCccccCccccccCCCcccHH-HHHHHHHHh--cCCeEEEeCCCCCHHHHHHHH-
Confidence 4443 56678899999998733221112211 10011 123333332 357888999999999999999
Q ss_pred HHHHhcCCCc
Q psy10250 354 LVLIMLGPDW 363 (387)
Q Consensus 354 l~~~~~Ga~w 363 (387)
.+||+.
T Consensus 371 ----a~GA~~ 376 (505)
T PLN02274 371 ----TLGAST 376 (505)
T ss_pred ----HcCCCE
Confidence 489863
No 79
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=96.31 E-value=0.065 Score=56.57 Aligned_cols=131 Identities=21% Similarity=0.291 Sum_probs=84.2
Q ss_pred CceEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCC
Q psy10250 201 DVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELK 280 (387)
Q Consensus 201 ~v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~ 280 (387)
...|..+ ++-+. . -...++..++.|++=| |++.. .|+...+.+.++.+++..++ +.||. +-..
T Consensus 216 ~l~V~aa-i~~~~--~----~~e~a~~L~~agvdvi--vvD~a---~g~~~~vl~~i~~i~~~~p~---~~vi~--g~v~ 278 (486)
T PRK05567 216 RLRVGAA-VGVGA--D----NEERAEALVEAGVDVL--VVDTA---HGHSEGVLDRVREIKAKYPD---VQIIA--GNVA 278 (486)
T ss_pred CEEEEee-cccCc--c----hHHHHHHHHHhCCCEE--EEECC---CCcchhHHHHHHHHHhhCCC---CCEEE--eccC
Confidence 5677777 45321 1 1677888888899854 55553 26667788888888875543 56666 3333
Q ss_pred ChHHHHHHHHHHHHcCCCEEEcCCCCCCC---------CCChhhhHhHHHHHHHHHHHc-CCCceEeEeccCCCHHHHHH
Q psy10250 281 TSENIYCASMTAMFAGSDFIKTSTGKEKT---------NATIPAGIIMCSAIKHFHKLS-GKKIGLKPAGGISTFEDSVR 350 (387)
Q Consensus 281 t~e~i~~a~~ia~~aGaDfVKTSTGf~~~---------gat~~~~~~m~~~v~~~~~~~-~~~~gIKasGGIrt~~~a~~ 350 (387)
|.++ ++.++++|+|+|+.+ ++++ +...+.. +++....+.. ..++.|=+.||||+..++.+
T Consensus 279 t~e~----a~~l~~aGad~i~vg--~g~gs~~~~r~~~~~g~p~~----~~~~~~~~~~~~~~~~viadGGi~~~~di~k 348 (486)
T PRK05567 279 TAEA----ARALIEAGADAVKVG--IGPGSICTTRIVAGVGVPQI----TAIADAAEAAKKYGIPVIADGGIRYSGDIAK 348 (486)
T ss_pred CHHH----HHHHHHcCCCEEEEC--CCCCccccceeecCCCcCHH----HHHHHHHHHhccCCCeEEEcCCCCCHHHHHH
Confidence 5553 456778999999964 3332 2212222 2343334433 34688999999999999999
Q ss_pred HHHHHHHhcCCCc
Q psy10250 351 WIYLVLIMLGPDW 363 (387)
Q Consensus 351 ~i~l~~~~~Ga~w 363 (387)
-+ .+||+.
T Consensus 349 Al-----a~GA~~ 356 (486)
T PRK05567 349 AL-----AAGASA 356 (486)
T ss_pred HH-----HhCCCE
Confidence 99 589864
No 80
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=96.30 E-value=0.66 Score=47.24 Aligned_cols=135 Identities=13% Similarity=0.021 Sum_probs=82.1
Q ss_pred EEEEecCCCCCCC-CHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCCh
Q psy10250 204 VASVAAGFPSGQY-LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTS 282 (387)
Q Consensus 204 v~tVvigFP~G~~-~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~ 282 (387)
+++. .|.|.+.. +.+.-+.-++.+.+.||++|=+.=-.|.+ +...+++-++.+++..+. +-|+...=+|.
T Consensus 182 is~~-fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a---~P~~v~~lv~~l~~~~~~-----~~i~~H~Hnd~ 252 (347)
T PLN02746 182 VSCV-VGCPIEGPVPPSKVAYVAKELYDMGCYEISLGDTIGVG---TPGTVVPMLEAVMAVVPV-----DKLAVHFHDTY 252 (347)
T ss_pred EEee-ecCCccCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCc---CHHHHHHHHHHHHHhCCC-----CeEEEEECCCC
Confidence 3445 58896544 56666666888999999998555334443 477888888888876542 12566555443
Q ss_pred HHHHHHHHHHHHcCCCEEEcCCC-CCC--------CCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHH
Q psy10250 283 ENIYCASMTAMFAGSDFIKTSTG-KEK--------TNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 353 (387)
Q Consensus 283 e~i~~a~~ia~~aGaDfVKTSTG-f~~--------~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~ 353 (387)
-.=..-+..|+++|+++|-+|.+ .|. +++..|++..|+ +.. |++. || +++....+-.
T Consensus 253 GlA~AN~lAA~~aGa~~vd~sv~GlGecPfa~graGN~atE~lv~~L-------~~~----G~~t--gi-Dl~~L~~~s~ 318 (347)
T PLN02746 253 GQALANILVSLQMGISTVDSSVAGLGGCPYAKGASGNVATEDVVYML-------NGL----GVST--NV-DLGKLMAAGD 318 (347)
T ss_pred ChHHHHHHHHHHhCCCEEEEecccccCCCCCCCCCCChhHHHHHHHH-------Hhc----CCCC--CC-CHHHHHHHHH
Confidence 33333456799999999999874 542 445565433332 221 2321 33 3555555555
Q ss_pred HHHHhcCC
Q psy10250 354 LVLIMLGP 361 (387)
Q Consensus 354 l~~~~~Ga 361 (387)
++.+.+|.
T Consensus 319 ~v~~~~g~ 326 (347)
T PLN02746 319 FISKHLGR 326 (347)
T ss_pred HHHHHhCC
Confidence 55666674
No 81
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.28 E-value=0.15 Score=51.14 Aligned_cols=134 Identities=14% Similarity=0.087 Sum_probs=87.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCeeeee--------cC--chhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHH
Q psy10250 215 QYLLETRLHEIELLAKQKVDEVDIV--------IQ--RSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSEN 284 (387)
Q Consensus 215 ~~~~e~K~~Ea~~Ai~~GAdEID~V--------in--~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~ 284 (387)
....+.=..-++.+.+.|+|.||+= .+ +|.-+-.+.+.+.+-+++++++++-++.+|+=+-.....+.+.
T Consensus 63 g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~ 142 (318)
T TIGR00742 63 GSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEF 142 (318)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHH
Confidence 3344544555666667899999962 21 3556667889999999999998865578888763322223355
Q ss_pred HHHHHHHHHHcCCCEEEcCC------CCCCC--CCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHH
Q psy10250 285 IYCASMTAMFAGSDFIKTST------GKEKT--NATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWI 352 (387)
Q Consensus 285 i~~a~~ia~~aGaDfVKTST------Gf~~~--gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i 352 (387)
....++.+.++|+|.|--.. ||++. ....+ +. .+.|+.+++.++ ++.|=..|||+|++++.+++
T Consensus 143 ~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~-~~--~~~i~~vk~~~~-~ipVi~NGdI~s~~da~~~l 214 (318)
T TIGR00742 143 LCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPP-LR--YERVYQLKKDFP-HLTIEINGGIKNSEQIKQHL 214 (318)
T ss_pred HHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCc-hh--HHHHHHHHHhCC-CCcEEEECCcCCHHHHHHHH
Confidence 66788999999999884332 23211 01111 11 134666666553 47777899999999999998
No 82
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=96.27 E-value=0.56 Score=45.35 Aligned_cols=129 Identities=13% Similarity=0.164 Sum_probs=84.3
Q ss_pred HHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCC-CcceEEEEeeccCCChHHHHHHHHHHHHcCCCEE-
Q psy10250 223 HEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGE-KIHMKTILAVGELKTSENIYCASMTAMFAGSDFI- 300 (387)
Q Consensus 223 ~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~-~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfV- 300 (387)
..++.|.+.|++.|-+....+.+ +. +...++.++. +..+-+-++.+...+++.+.+.++.+.++|+|-|
T Consensus 89 ~~i~~a~~~g~~~iri~~~~s~~-----~~----~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~ 159 (263)
T cd07943 89 DDLKMAADLGVDVVRVATHCTEA-----DV----SEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVY 159 (263)
T ss_pred HHHHHHHHcCCCEEEEEechhhH-----HH----HHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEE
Confidence 66889999999999988766632 23 3333333322 2467777787777788999999999999999954
Q ss_pred -EcCCCCCCCCCChhhhHhHHHHHHHHHHHcCC-CceEeEeccCCCHH----HHHHHHHHHHHhcCCCccCCCcceeecc
Q psy10250 301 -KTSTGKEKTNATIPAGIIMCSAIKHFHKLSGK-KIGLKPAGGISTFE----DSVRWIYLVLIMLGPDWLNKDLFRIGAS 374 (387)
Q Consensus 301 -KTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~-~~gIKasGGIrt~~----~a~~~i~l~~~~~Ga~w~~~~~~RIGtS 374 (387)
+=++| .++|+.+..+++ .+++..+. .+++.. =.|+- .++.-+ ++|++|++....=+|-.
T Consensus 160 l~DT~G----~~~P~~v~~lv~---~l~~~~~~~~l~~H~---Hn~~GlA~AN~laAi-----~aGa~~vd~s~~GlG~~ 224 (263)
T cd07943 160 VTDSAG----AMLPDDVRERVR---ALREALDPTPVGFHG---HNNLGLAVANSLAAV-----EAGATRIDGSLAGLGAG 224 (263)
T ss_pred EcCCCC----CcCHHHHHHHHH---HHHHhCCCceEEEEe---cCCcchHHHHHHHHH-----HhCCCEEEeecccccCC
Confidence 44555 477876665544 44455554 343332 12332 233334 58999998887777765
Q ss_pred c
Q psy10250 375 S 375 (387)
Q Consensus 375 s 375 (387)
+
T Consensus 225 a 225 (263)
T cd07943 225 A 225 (263)
T ss_pred c
Confidence 3
No 83
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=96.27 E-value=0.54 Score=48.52 Aligned_cols=143 Identities=17% Similarity=0.182 Sum_probs=79.0
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeeec---Cch------hhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHH
Q psy10250 216 YLLETRLHEIELLAKQKVDEVDIVI---QRS------LVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIY 286 (387)
Q Consensus 216 ~~~e~K~~Ea~~Ai~~GAdEID~Vi---n~~------~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~ 286 (387)
.+.+.=..-++..-+.|||-|.+=+ |.. .....+.+.+.+=++.|++...-|..+|+= +.+ +.|.
T Consensus 124 ~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLs---Pn~---t~i~ 197 (385)
T PLN02495 124 YNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKMT---PNI---TDIT 197 (385)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEeC---CCh---hhHH
Confidence 3334434444455556888766532 321 112234455555557777665434666654 344 3477
Q ss_pred HHHHHHHHcCCCEEE---cCC-CC-----------------CCCCCChhhhH-hHHHHHHHHHHHc----CCCceEeEec
Q psy10250 287 CASMTAMFAGSDFIK---TST-GK-----------------EKTNATIPAGI-IMCSAIKHFHKLS----GKKIGLKPAG 340 (387)
Q Consensus 287 ~a~~ia~~aGaDfVK---TST-Gf-----------------~~~gat~~~~~-~m~~~v~~~~~~~----~~~~gIKasG 340 (387)
..++.|.++|+|.|- |-. +. +.+|-+=..++ +-+..|+.+++.+ +.++.|=.+|
T Consensus 198 ~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvG 277 (385)
T PLN02495 198 QPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIG 277 (385)
T ss_pred HHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEEC
Confidence 788889999999652 211 10 01112211111 1112333344433 3357899999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCccCCCcceeecc
Q psy10250 341 GISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 374 (387)
Q Consensus 341 GIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtS 374 (387)
||.|.+||.+|+ .+||+ ..-+||.
T Consensus 278 GI~s~~Da~e~i-----~aGAs-----~VQv~Ta 301 (385)
T PLN02495 278 GVETGGDAAEFI-----LLGAD-----TVQVCTG 301 (385)
T ss_pred CCCCHHHHHHHH-----HhCCC-----ceeEeee
Confidence 999999999999 69985 4556665
No 84
>PRK08227 autoinducer 2 aldolase; Validated
Probab=96.26 E-value=0.018 Score=56.38 Aligned_cols=82 Identities=16% Similarity=0.153 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHccc-CccEEEEEeccC-C-CCHHHHHHHHHHHHHc
Q psy10250 10 ETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEE-KIHMKTILAVGE-L-KTSENIYYASMTAMFA 86 (387)
Q Consensus 10 ~~K~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~-~~~~KvIlEt~~-L-~~~e~i~~a~~~a~~a 86 (387)
..-...+++|++.|||-+=+-+|+| +..-..-.+++.++++.|+. +.++=++.--|- . ++.+.|..|++++.+.
T Consensus 94 ~~l~~sVeeAvrlGAdAV~~~v~~G---s~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaEL 170 (264)
T PRK08227 94 EAVAVDMEDAVRLNACAVAAQVFIG---SEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEM 170 (264)
T ss_pred ccceecHHHHHHCCCCEEEEEEecC---CHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHH
Confidence 3445568899999999999999999 44445667789999998874 444333332221 1 1245688999999999
Q ss_pred CCCEEecC
Q psy10250 87 GSDFIKTS 94 (387)
Q Consensus 87 g~dfvKTS 94 (387)
|||||||.
T Consensus 171 GADiVK~~ 178 (264)
T PRK08227 171 GAQIIKTY 178 (264)
T ss_pred cCCEEecC
Confidence 99999974
No 85
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=96.25 E-value=0.023 Score=58.46 Aligned_cols=91 Identities=20% Similarity=0.252 Sum_probs=61.6
Q ss_pred HHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCc
Q psy10250 255 SEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKI 334 (387)
Q Consensus 255 ~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~ 334 (387)
++|+.+++..+.+.++|=| + +.+. ++.|.++|+|+|--|- -+.+ .+....-.++.+..+++.+++++
T Consensus 243 ~~i~~lr~~~~~pvivKgV-----~-~~~d----A~~a~~~G~d~I~vsn-hGGr--~~d~~~~t~~~L~ei~~~~~~~~ 309 (383)
T cd03332 243 EDLAFLREWTDLPIVLKGI-----L-HPDD----ARRAVEAGVDGVVVSN-HGGR--QVDGSIAALDALPEIVEAVGDRL 309 (383)
T ss_pred HHHHHHHHhcCCCEEEecC-----C-CHHH----HHHHHHCCCCEEEEcC-CCCc--CCCCCcCHHHHHHHHHHHhcCCC
Confidence 6677788776545667733 4 4443 3568889999998873 2221 11111111245666667777889
Q ss_pred eEeEeccCCCHHHHHHHHHHHHHhcCCCc
Q psy10250 335 GLKPAGGISTFEDSVRWIYLVLIMLGPDW 363 (387)
Q Consensus 335 gIKasGGIrt~~~a~~~i~l~~~~~Ga~w 363 (387)
.|=++||||+..|..+-+ .+||+.
T Consensus 310 ~vi~dGGIr~G~Dv~KAL-----aLGA~~ 333 (383)
T cd03332 310 TVLFDSGVRTGADIMKAL-----ALGAKA 333 (383)
T ss_pred eEEEeCCcCcHHHHHHHH-----HcCCCE
Confidence 999999999999999999 489964
No 86
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=96.16 E-value=0.14 Score=48.41 Aligned_cols=158 Identities=14% Similarity=0.141 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEEC---CccHHHHHHHhhhcCCCCCc--eEEEEecCCCCCCCC
Q psy10250 143 DTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVY---PARVVDVIKVLDRENARDDV--KVASVAAGFPSGQYL 217 (387)
Q Consensus 143 ~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~---P~~v~~a~~~L~~~~~~~~v--~v~tVvigFP~G~~~ 217 (387)
.+.++..+.++... +-|+..+.|. |.+.+..+++-+.. .++ -.+||
T Consensus 17 ~~~e~a~~~~~al~----------------~~Gi~~iEit~~t~~a~~~i~~l~~~~---~~~~vGAGTV---------- 67 (204)
T TIGR01182 17 DDVDDALPLAKALI----------------EGGLRVLEVTLRTPVALDAIRLLRKEV---PDALIGAGTV---------- 67 (204)
T ss_pred CCHHHHHHHHHHHH----------------HcCCCEEEEeCCCccHHHHHHHHHHHC---CCCEEEEEeC----------
Confidence 47888888888887 5677777775 55555444433321 233 33333
Q ss_pred HHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCC
Q psy10250 218 LETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGS 297 (387)
Q Consensus 218 ~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGa 297 (387)
.-..+++.|++.||+=| +-.++.. .+.+.|.. .-+-+| -+-+ |+.|+. .|.++|+
T Consensus 68 --l~~~~a~~a~~aGA~Fi-vsP~~~~--------------~v~~~~~~-~~i~~i--PG~~-TptEi~----~A~~~Ga 122 (204)
T TIGR01182 68 --LNPEQLRQAVDAGAQFI-VSPGLTP--------------ELAKHAQD-HGIPII--PGVA-TPSEIM----LALELGI 122 (204)
T ss_pred --CCHHHHHHHHHcCCCEE-ECCCCCH--------------HHHHHHHH-cCCcEE--CCCC-CHHHHH----HHHHCCC
Confidence 23567999999999976 3333321 34444543 111111 2667 778874 4689999
Q ss_pred CEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccchH
Q psy10250 298 DFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLL 377 (387)
Q Consensus 298 DfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~~ 377 (387)
|+||---+-..+| +. -|+.++.-. +.+.+-++|||.. +.+..|+ .+|+ .-+|.+|.+
T Consensus 123 ~~vKlFPA~~~GG--~~-------yikal~~pl-p~i~~~ptGGV~~-~N~~~~l-----~aGa-------~~vg~Gs~L 179 (204)
T TIGR01182 123 TALKLFPAEVSGG--VK-------MLKALAGPF-PQVRFCPTGGINL-ANVRDYL-----AAPN-------VACGGGSWL 179 (204)
T ss_pred CEEEECCchhcCC--HH-------HHHHHhccC-CCCcEEecCCCCH-HHHHHHH-----hCCC-------EEEEEChhh
Confidence 9999644321112 22 244444444 5689999999976 8888898 4887 677766544
No 87
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=96.14 E-value=1.5 Score=44.29 Aligned_cols=206 Identities=12% Similarity=0.023 Sum_probs=113.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEecCCCCCCCCCCCcccccchhccccchhhhhhHHHHHHhhcccccc----cCCC-CCCHH
Q psy10250 72 TSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEFIDLT----TLSG-DDTEA 146 (387)
Q Consensus 72 ~~e~i~~a~~~a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ID~T----~L~~-~~T~~ 146 (387)
+.+++...++...++|+|.|--+-|-+.+|.+....... ++..| +++.+.+....+ +|.| ..+.+
T Consensus 23 ~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~------~~~~e----~i~~~~~~~~~~~~~~ll~pg~~~~~ 92 (337)
T PRK08195 23 TLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGA------HTDEE----YIEAAAEVVKQAKIAALLLPGIGTVD 92 (337)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCC------CCHHH----HHHHHHHhCCCCEEEEEeccCcccHH
Confidence 568888899999999999999765543333332211111 11111 222222222222 2323 34666
Q ss_pred HHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEecCCCCCCCCHHHHHHHHH
Q psy10250 147 VVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIE 226 (387)
Q Consensus 147 ~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~~e~K~~Ea~ 226 (387)
+++...+.-+ ..--|++.-.....+.+.++-.. ..+..+...+.. .+..+.+.=+..++
T Consensus 93 dl~~a~~~gv------------------d~iri~~~~~e~~~~~~~i~~ak-~~G~~v~~~l~~--a~~~~~e~l~~~a~ 151 (337)
T PRK08195 93 DLKMAYDAGV------------------RVVRVATHCTEADVSEQHIGLAR-ELGMDTVGFLMM--SHMAPPEKLAEQAK 151 (337)
T ss_pred HHHHHHHcCC------------------CEEEEEEecchHHHHHHHHHHHH-HCCCeEEEEEEe--ccCCCHHHHHHHHH
Confidence 7654433322 33335555444444443332110 124443322111 23456677777788
Q ss_pred HHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCC-C
Q psy10250 227 LLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTST-G 305 (387)
Q Consensus 227 ~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTST-G 305 (387)
.+.+.||+.|=++=-.|.+ ..+.+++=++.+++..++ .+-|+...=++...=..-+..|+++|+++|-+|- |
T Consensus 152 ~~~~~Ga~~i~i~DT~G~~---~P~~v~~~v~~l~~~l~~----~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G 224 (337)
T PRK08195 152 LMESYGAQCVYVVDSAGAL---LPEDVRDRVRALRAALKP----DTQVGFHGHNNLGLGVANSLAAVEAGATRIDGSLAG 224 (337)
T ss_pred HHHhCCCCEEEeCCCCCCC---CHHHHHHHHHHHHHhcCC----CCeEEEEeCCCcchHHHHHHHHHHhCCCEEEecChh
Confidence 9999999998766556654 367788888888876643 1335555444433333345679999999999876 4
Q ss_pred C--CCCCCChhh
Q psy10250 306 K--EKTNATIPA 315 (387)
Q Consensus 306 f--~~~gat~~~ 315 (387)
+ +++++..|.
T Consensus 225 lG~~aGN~~tE~ 236 (337)
T PRK08195 225 LGAGAGNTPLEV 236 (337)
T ss_pred hcccccCccHHH
Confidence 4 445666664
No 88
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=96.13 E-value=0.027 Score=57.44 Aligned_cols=91 Identities=18% Similarity=0.203 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCC
Q psy10250 253 LFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGK 332 (387)
Q Consensus 253 v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~ 332 (387)
.-++|+.+++..+.+.++|=| + +.+. ++.|.++|+|.|..|-. | |..++....-++.+..+++.++
T Consensus 224 ~w~~i~~ir~~~~~pviiKgV-----~-~~ed----a~~a~~~G~d~I~VSnh-G--Grqld~~~~~~~~L~ei~~~~~- 289 (361)
T cd04736 224 NWQDLRWLRDLWPHKLLVKGI-----V-TAED----AKRCIELGADGVILSNH-G--GRQLDDAIAPIEALAEIVAATY- 289 (361)
T ss_pred CHHHHHHHHHhCCCCEEEecC-----C-CHHH----HHHHHHCCcCEEEECCC-C--cCCCcCCccHHHHHHHHHHHhC-
Confidence 345888898887655566633 5 5553 35678899999998752 2 2222211111245555555553
Q ss_pred CceEeEeccCCCHHHHHHHHHHHHHhcCCCc
Q psy10250 333 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 363 (387)
Q Consensus 333 ~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w 363 (387)
+.|=++||||+..++.+-+ .+||+.
T Consensus 290 -~~vi~dGGIr~g~Dv~KAL-----aLGA~a 314 (361)
T cd04736 290 -KPVLIDSGIRRGSDIVKAL-----ALGANA 314 (361)
T ss_pred -CeEEEeCCCCCHHHHHHHH-----HcCCCE
Confidence 7788999999999999999 499964
No 89
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.10 E-value=0.032 Score=55.27 Aligned_cols=84 Identities=20% Similarity=0.168 Sum_probs=62.0
Q ss_pred HHHHHHHHcCCCeeeeecchhHHhc-------------------CChhHHHHHHHHHHHHcccCccEEEEEeccC-----
Q psy10250 14 HEIELLAKQKVDEVDIVIQRSLVLN-------------------NQWPELFSEVKQMKEKCEEKIHMKTILAVGE----- 69 (387)
Q Consensus 14 ~E~~~a~~~GA~EiD~Vin~~~lk~-------------------g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~----- 69 (387)
.-|+.|.+.|+|.||+-..-++|.+ ++...+.+-+++|+++++.+.++.|-+....
T Consensus 145 ~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g 224 (327)
T cd02803 145 AAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGG 224 (327)
T ss_pred HHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCC
Confidence 3467888899999999987666533 2345677888888888865445555454322
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEecCCCCC
Q psy10250 70 LKTSENIYYASMTAMFAGSDFIKTSTGKE 98 (387)
Q Consensus 70 L~~~e~i~~a~~~a~~ag~dfvKTSTG~~ 98 (387)
+ +.++....++.+.++|+|||..|.|+.
T Consensus 225 ~-~~~e~~~la~~l~~~G~d~i~vs~g~~ 252 (327)
T cd02803 225 L-TLEEAIEIAKALEEAGVDALHVSGGSY 252 (327)
T ss_pred C-CHHHHHHHHHHHHHcCCCEEEeCCCCC
Confidence 3 567778888888999999999999974
No 90
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=96.09 E-value=0.53 Score=50.10 Aligned_cols=207 Identities=16% Similarity=0.104 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHcCCCEEecCCCCCCCCCCCcccccchhccccchhhhhhHHHHHHhhcccccccCCCC----------
Q psy10250 73 SENIYYASMTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEFIDLTTLSGD---------- 142 (387)
Q Consensus 73 ~e~i~~a~~~a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ID~T~L~~~---------- 142 (387)
.+++...+...-++|.+.|-.. +|+|.....++ .. |+--+.++.+.+.+-.|.|.--
T Consensus 26 t~d~l~ia~~ld~~G~~siE~~-----GGatfd~~~rf-------l~-Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~ 92 (499)
T PRK12330 26 MEDMVGACEDIDNAGYWSVECW-----GGATFDACIRF-------LN-EDPWERLRTFRKLMPNSRLQMLLRGQNLLGYR 92 (499)
T ss_pred HHHHHHHHHHHHhcCCCEEEec-----CCcchhhhhcc-------cC-CCHHHHHHHHHHhCCCCeEEEEEcccccCCcc
Confidence 3556667777788999999973 45654433333 11 2333334444444443433211
Q ss_pred -CCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEecCCCCC-CCCHHH
Q psy10250 143 -DTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPSG-QYLLET 220 (387)
Q Consensus 143 -~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G-~~~~e~ 220 (387)
...+-++.+++.|.. +...+--|+.+.++++.....++... ..+..+-.. ++|-.+ .++.+.
T Consensus 93 ~y~ddvv~~fv~~a~~--------------~Gidi~RIfd~lndv~nl~~ai~~vk-~ag~~~~~~-i~yt~sp~~t~e~ 156 (499)
T PRK12330 93 HYEDEVVDRFVEKSAE--------------NGMDVFRVFDALNDPRNLEHAMKAVK-KVGKHAQGT-ICYTVSPIHTVEG 156 (499)
T ss_pred CcchhHHHHHHHHHHH--------------cCCCEEEEEecCChHHHHHHHHHHHH-HhCCeEEEE-EEEecCCCCCHHH
Confidence 234467778888771 13455567777888766555543210 123333233 355222 456777
Q ss_pred HHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEE
Q psy10250 221 RLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 300 (387)
Q Consensus 221 K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfV 300 (387)
=+.-++++.+.||+.|-+.=-.|.+ ....+++-++++++..++ .+.|+...=+|.-.-...+..|+++|+|+|
T Consensus 157 ~~~~a~~l~~~Gad~I~IkDtaGll---~P~~~~~LV~~Lk~~~~~----~ipI~~H~Hnt~GlA~An~laAieAGad~v 229 (499)
T PRK12330 157 FVEQAKRLLDMGADSICIKDMAALL---KPQPAYDIVKGIKEACGE----DTRINLHCHSTTGVTLVSLMKAIEAGVDVV 229 (499)
T ss_pred HHHHHHHHHHcCCCEEEeCCCccCC---CHHHHHHHHHHHHHhCCC----CCeEEEEeCCCCCcHHHHHHHHHHcCCCEE
Confidence 7777999999999999655334433 477888888999887652 233444444333333334566999999999
Q ss_pred EcCC-C--CCCCCCChhh
Q psy10250 301 KTST-G--KEKTNATIPA 315 (387)
Q Consensus 301 KTST-G--f~~~gat~~~ 315 (387)
-||- | ++++++..|.
T Consensus 230 Dtai~Glg~~aGn~atE~ 247 (499)
T PRK12330 230 DTAISSMSLGPGHNPTES 247 (499)
T ss_pred EeecccccccccchhHHH
Confidence 9976 3 3444455543
No 91
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=96.08 E-value=0.12 Score=54.61 Aligned_cols=118 Identities=18% Similarity=0.166 Sum_probs=78.6
Q ss_pred HHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEE-
Q psy10250 223 HEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK- 301 (387)
Q Consensus 223 ~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVK- 301 (387)
.-++..++.|+|- +|+|... |+...+.+-++.+++..++ +-||. +...|.|. ++.++++|+|+||
T Consensus 228 ~ra~~Lv~aGVd~--i~~D~a~---g~~~~~~~~i~~i~~~~~~---~~vi~--g~~~t~~~----~~~l~~~G~d~i~v 293 (475)
T TIGR01303 228 GKAKALLDAGVDV--LVIDTAH---GHQVKMISAIKAVRALDLG---VPIVA--GNVVSAEG----VRDLLEAGANIIKV 293 (475)
T ss_pred HHHHHHHHhCCCE--EEEeCCC---CCcHHHHHHHHHHHHHCCC---CeEEE--eccCCHHH----HHHHHHhCCCEEEE
Confidence 5567777889888 6788876 8889999999999986654 45666 43335553 4567789999999
Q ss_pred -------cCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCc
Q psy10250 302 -------TSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 363 (387)
Q Consensus 302 -------TSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w 363 (387)
+.|-. -.|...+....+.+..+..++ ..+.|=|.||||+..|..+-+ .+||++
T Consensus 294 g~g~Gs~~ttr~-~~~~g~~~~~a~~~~~~~~~~---~~~~viadGgi~~~~di~kal-----a~GA~~ 353 (475)
T TIGR01303 294 GVGPGAMCTTRM-MTGVGRPQFSAVLECAAEARK---LGGHVWADGGVRHPRDVALAL-----AAGASN 353 (475)
T ss_pred CCcCCccccCcc-ccCCCCchHHHHHHHHHHHHH---cCCcEEEeCCCCCHHHHHHHH-----HcCCCE
Confidence 32211 112222222333333333332 257789999999999999988 489853
No 92
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=96.02 E-value=0.12 Score=50.14 Aligned_cols=128 Identities=20% Similarity=0.147 Sum_probs=75.8
Q ss_pred HHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHH-cCCCEEEcC
Q psy10250 225 IELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMF-AGSDFIKTS 303 (387)
Q Consensus 225 a~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~-aGaDfVKTS 303 (387)
++.+.+.|++-+=+. +. -.+|...+.+.|+. .-++.|+=..--++++.+. .++.. .|..|+=|+
T Consensus 108 ~~~~~~aGvdgviip-Dl----------p~ee~~~~~~~~~~-~gl~~i~lv~P~T~~eri~---~i~~~~~gfiy~vs~ 172 (256)
T TIGR00262 108 YAKCKEVGVDGVLVA-DL----------PLEESGDLVEAAKK-HGVKPIFLVAPNADDERLK---QIAEKSQGFVYLVSR 172 (256)
T ss_pred HHHHHHcCCCEEEEC-CC----------ChHHHHHHHHHHHH-CCCcEEEEECCCCCHHHHH---HHHHhCCCCEEEEEC
Confidence 566677777765433 22 12456666666654 2356564444332444443 33334 478899888
Q ss_pred CCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccchHHHHHH
Q psy10250 304 TGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQ 382 (387)
Q Consensus 304 TGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~~~il~~ 382 (387)
.|+........ .-+.+-|+.+++..+. .|=+-|||+|.+++..+. .+|+| --|-.|..++.+.+
T Consensus 173 ~G~TG~~~~~~--~~~~~~i~~lr~~~~~--pi~vgfGI~~~e~~~~~~-----~~GAD------gvVvGSaiv~~~~~ 236 (256)
T TIGR00262 173 AGVTGARNRAA--SALNELVKRLKAYSAK--PVLVGFGISKPEQVKQAI-----DAGAD------GVIVGSAIVKIIEE 236 (256)
T ss_pred CCCCCCcccCC--hhHHHHHHHHHhhcCC--CEEEeCCCCCHHHHHHHH-----HcCCC------EEEECHHHHHHHHh
Confidence 88754321221 1234566777766543 466789999999999999 58986 23334666665543
No 93
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.01 E-value=0.082 Score=55.90 Aligned_cols=122 Identities=16% Similarity=0.180 Sum_probs=82.1
Q ss_pred HHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEE
Q psy10250 222 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 301 (387)
Q Consensus 222 ~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVK 301 (387)
...++..++.|++- +++|.. .|+-..+.+-|+.+++..++ +-+|- +-..|.| .++-++++|||+||
T Consensus 229 ~~~a~~Lv~aGvd~--i~~D~a---~~~~~~~~~~i~~ik~~~p~---~~v~a--gnv~t~~----~a~~l~~aGad~v~ 294 (479)
T PRK07807 229 AAKARALLEAGVDV--LVVDTA---HGHQEKMLEALRAVRALDPG---VPIVA--GNVVTAE----GTRDLVEAGADIVK 294 (479)
T ss_pred HHHHHHHHHhCCCE--EEEecc---CCccHHHHHHHHHHHHHCCC---CeEEe--eccCCHH----HHHHHHHcCCCEEE
Confidence 46677788889888 777875 36778888889999987754 44554 2222434 45667889999999
Q ss_pred ----c-----CCCCCCCCCChhhhHhHHHHHHHHHHHc-CCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCc
Q psy10250 302 ----T-----STGKEKTNATIPAGIIMCSAIKHFHKLS-GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDL 368 (387)
Q Consensus 302 ----T-----STGf~~~gat~~~~~~m~~~v~~~~~~~-~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~ 368 (387)
| .-++ .|.+.++. .+|....+.. ...+.|=|-|||++..++.+.+ .+|++++--|.
T Consensus 295 vgig~gsictt~~~--~~~~~p~~----~av~~~~~~~~~~~~~via~ggi~~~~~~~~al-----~~ga~~v~~g~ 360 (479)
T PRK07807 295 VGVGPGAMCTTRMM--TGVGRPQF----SAVLECAAAARELGAHVWADGGVRHPRDVALAL-----AAGASNVMIGS 360 (479)
T ss_pred ECccCCcccccccc--cCCchhHH----HHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHH-----HcCCCeeeccH
Confidence 3 2233 23444443 3444444432 2357888999999999999999 48987654333
No 94
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=95.99 E-value=0.71 Score=46.52 Aligned_cols=121 Identities=23% Similarity=0.258 Sum_probs=76.6
Q ss_pred HHHHHHHHCCCCeee-eecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEE
Q psy10250 223 HEIELLAKQKVDEVD-IVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 301 (387)
Q Consensus 223 ~Ea~~Ai~~GAdEID-~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVK 301 (387)
..+...++.|. +.| +|++.. .|+-..+.+-|+.+++..+. +..+-=++. +.+ .++.++++|+|.|+
T Consensus 97 ~r~~~lv~a~~-~~d~i~~D~a---hg~s~~~~~~i~~i~~~~p~--~~vi~GnV~---t~e----~a~~l~~aGad~I~ 163 (321)
T TIGR01306 97 EFVTQLAEEAL-TPEYITIDIA---HGHSNSVINMIKHIKTHLPD--SFVIAGNVG---TPE----AVRELENAGADATK 163 (321)
T ss_pred HHHHHHHhcCC-CCCEEEEeCc---cCchHHHHHHHHHHHHhCCC--CEEEEecCC---CHH----HHHHHHHcCcCEEE
Confidence 44555566671 224 456764 58999999999999987753 222222222 433 46778899999999
Q ss_pred cCCCCCCCCCCh-----hhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCc
Q psy10250 302 TSTGKEKTNATI-----PAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 363 (387)
Q Consensus 302 TSTGf~~~gat~-----~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w 363 (387)
.|-|=+..-.|- ...-.++.+|...++.. ++.|=+.||||+..|+.+.+ .+||+.
T Consensus 164 V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~--~~pVIadGGIr~~~Di~KAL-----a~GAd~ 223 (321)
T TIGR01306 164 VGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA--RKPIIADGGIRTHGDIAKSI-----RFGASM 223 (321)
T ss_pred ECCCCCccccceeeeccCCCchHHHHHHHHHHhc--CCeEEEECCcCcHHHHHHHH-----HcCCCE
Confidence 885432210000 00001224566666554 57899999999999999999 489863
No 95
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=95.98 E-value=1.2 Score=42.23 Aligned_cols=152 Identities=20% Similarity=0.200 Sum_probs=92.8
Q ss_pred CceEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhh-----cCChhHHHHHHHHHHHHhC-CCcceEEEE
Q psy10250 201 DVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVL-----NNQWPELFSEVKQMKEKCG-EKIHMKTIL 274 (387)
Q Consensus 201 ~v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk-----~g~~~~v~~Ei~~v~~~~~-~~~~lKvIl 274 (387)
++++++.+ +.| ...++.+.+.|++.|-+.+..+-.. ....+...+++....+.+. .+..+-+-+
T Consensus 66 ~~~~~~l~---~~~-------~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 66 NVKLQALV---RNR-------EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred CcEEEEEc---cCc-------hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56776553 233 6689999999999999998765210 0112223333433333332 235677778
Q ss_pred eeccC--CChHHHHHHHHHHHHcCCCEEEc--CCCCCCCCCChhhhHhHHHHHHHHHHHcCC-CceEeEec--cCCCHHH
Q psy10250 275 AVGEL--KTSENIYCASMTAMFAGSDFIKT--STGKEKTNATIPAGIIMCSAIKHFHKLSGK-KIGLKPAG--GISTFED 347 (387)
Q Consensus 275 Et~~L--~t~e~i~~a~~ia~~aGaDfVKT--STGf~~~gat~~~~~~m~~~v~~~~~~~~~-~~gIKasG--GIrt~~~ 347 (387)
|+..- .+++.+....+.+.+.|+|.|-- ++| ..+|+.+..+++.+ ++..++ .+++..== |-- ...
T Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G----~~~P~~v~~li~~l---~~~~~~~~~~~H~Hn~~gla-~an 207 (265)
T cd03174 136 EDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVG----LATPEEVAELVKAL---REALPDVPLGLHTHNTLGLA-VAN 207 (265)
T ss_pred EeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcC----CcCHHHHHHHHHHH---HHhCCCCeEEEEeCCCCChH-HHH
Confidence 76554 57899999999999999997753 455 37888766654444 445542 33332210 111 122
Q ss_pred HHHHHHHHHHhcCCCccCCCcceeeccc
Q psy10250 348 SVRWIYLVLIMLGPDWLNKDLFRIGASS 375 (387)
Q Consensus 348 a~~~i~l~~~~~Ga~w~~~~~~RIGtSs 375 (387)
++.-+ .+|++|++....=||-.+
T Consensus 208 ~laA~-----~aG~~~id~s~~G~G~~~ 230 (265)
T cd03174 208 SLAAL-----EAGADRVDGSVNGLGERA 230 (265)
T ss_pred HHHHH-----HcCCCEEEeccccccccc
Confidence 33333 599999988888887654
No 96
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=95.98 E-value=0.23 Score=46.46 Aligned_cols=159 Identities=19% Similarity=0.269 Sum_probs=85.9
Q ss_pred EEECCccHHHHHHHhhhcCCCCCceEEEEe-cCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHH
Q psy10250 179 VCVYPARVVDVIKVLDRENARDDVKVASVA-AGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEV 257 (387)
Q Consensus 179 VcV~P~~v~~a~~~L~~~~~~~~v~v~tVv-igFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei 257 (387)
+-|.-+.+...+..-+ ..+++|...+ -+||...-...-=..|+++.++.|||-|=+=- =...+...+.+-+
T Consensus 14 ~giR~~~~~dI~aik~----~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDa----T~R~Rp~~l~~li 85 (192)
T PF04131_consen 14 VGIRANGVEDIRAIKK----AVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDA----TDRPRPETLEELI 85 (192)
T ss_dssp SEEEEESHHHHHHHHT----TB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-----SSSS-SS-HHHHH
T ss_pred eEEEcCCHHHHHHHHH----hcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEec----CCCCCCcCHHHHH
Confidence 3344445566554333 2578887773 14776555555567899999999998643221 1112225555555
Q ss_pred HHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEc-CCCCCCCCC-ChhhhHhHHHHHHHHHHHcCCCce
Q psy10250 258 KQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKT-STGKEKTNA-TIPAGIIMCSAIKHFHKLSGKKIG 335 (387)
Q Consensus 258 ~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKT-STGf~~~ga-t~~~~~~m~~~v~~~~~~~~~~~g 335 (387)
+++++. . .-++=..+ |.|+- ..|.++|+|||-| =.||.+... ..+ +..++++.....+.
T Consensus 86 ~~i~~~----~-~l~MADis---t~ee~----~~A~~~G~D~I~TTLsGYT~~t~~~~p-------D~~lv~~l~~~~~p 146 (192)
T PF04131_consen 86 REIKEK----Y-QLVMADIS---TLEEA----INAAELGFDIIGTTLSGYTPYTKGDGP-------DFELVRELVQADVP 146 (192)
T ss_dssp HHHHHC----T-SEEEEE-S---SHHHH----HHHHHTT-SEEE-TTTTSSTTSTTSSH-------HHHHHHHHHHTTSE
T ss_pred HHHHHh----C-cEEeeecC---CHHHH----HHHHHcCCCEEEcccccCCCCCCCCCC-------CHHHHHHHHhCCCc
Confidence 555542 2 33333333 44554 4578899999976 347754322 222 44444444445688
Q ss_pred EeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeecc
Q psy10250 336 LKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 374 (387)
Q Consensus 336 IKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtS 374 (387)
|=+=|+|.|+++|.+.+ ++|+. ..-+|+.
T Consensus 147 vIaEGri~tpe~a~~al-----~~GA~-----aVVVGsA 175 (192)
T PF04131_consen 147 VIAEGRIHTPEQAAKAL-----ELGAH-----AVVVGSA 175 (192)
T ss_dssp EEEESS--SHHHHHHHH-----HTT-S-----EEEE-HH
T ss_pred EeecCCCCCHHHHHHHH-----hcCCe-----EEEECcc
Confidence 88999999999999999 59984 4667874
No 97
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=95.96 E-value=0.28 Score=49.34 Aligned_cols=135 Identities=16% Similarity=0.142 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCeeeeecC----------chhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHH
Q psy10250 215 QYLLETRLHEIELLAKQKVDEVDIVIQ----------RSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSEN 284 (387)
Q Consensus 215 ~~~~e~K~~Ea~~Ai~~GAdEID~Vin----------~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~ 284 (387)
....+.=..-|+.+.+.|+|.||+=+- +|..+..+.+.+.+=++++++++.-++.+|+=+-...-.+.++
T Consensus 73 g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~ 152 (333)
T PRK11815 73 GSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEF 152 (333)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHH
Confidence 334455555677777789999996321 2444456788888888999988754466765332221123345
Q ss_pred HHHHHHHHHHcCCCEEEcC--C----CCCCC--CCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHH
Q psy10250 285 IYCASMTAMFAGSDFIKTS--T----GKEKT--NATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 353 (387)
Q Consensus 285 i~~a~~ia~~aGaDfVKTS--T----Gf~~~--gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~ 353 (387)
....++.+.++|+|+|--. | |+.+. ...++.. .+.++.+++.+ .++.|=++|||+|++++.+++.
T Consensus 153 ~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~---~~~i~~v~~~~-~~iPVI~nGgI~s~eda~~~l~ 225 (333)
T PRK11815 153 LCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLD---YDRVYRLKRDF-PHLTIEINGGIKTLEEAKEHLQ 225 (333)
T ss_pred HHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcC---HHHHHHHHHhC-CCCeEEEECCcCCHHHHHHHHh
Confidence 6677788889999999532 2 23211 0111111 13444555443 2578889999999999999983
No 98
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.94 E-value=0.062 Score=52.94 Aligned_cols=87 Identities=16% Similarity=0.191 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCC
Q psy10250 254 FSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKK 333 (387)
Q Consensus 254 ~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~ 333 (387)
..-++.+++.++ ..|+.+|+.-+ +|..+ |.++|+|||-- .+.+++ .++...+..+++
T Consensus 177 ~~av~~~r~~~~---~~~I~VEv~tl---eea~e----A~~~gaD~I~L------D~~~~e-------~l~~~v~~~~~~ 233 (277)
T PRK05742 177 AQAVAAAHRIAP---GKPVEVEVESL---DELRQ----ALAAGADIVML------DELSLD-------DMREAVRLTAGR 233 (277)
T ss_pred HHHHHHHHHhCC---CCeEEEEeCCH---HHHHH----HHHcCCCEEEE------CCCCHH-------HHHHHHHHhCCC
Confidence 344666666543 37899998754 55533 56899999943 245665 344444444568
Q ss_pred ceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccch
Q psy10250 334 IGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL 376 (387)
Q Consensus 334 ~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~ 376 (387)
+.+=||||| |.+.+.+|. ..|+ +.|.+|+.
T Consensus 234 i~leAsGGI-t~~ni~~~a-----~tGv-------D~Isvg~l 263 (277)
T PRK05742 234 AKLEASGGI-NESTLRVIA-----ETGV-------DYISIGAM 263 (277)
T ss_pred CcEEEECCC-CHHHHHHHH-----HcCC-------CEEEEChh
Confidence 999999999 699999999 5898 58887764
No 99
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=95.93 E-value=1.3 Score=43.43 Aligned_cols=129 Identities=15% Similarity=0.108 Sum_probs=81.7
Q ss_pred CeEEEEECCccHHHHHHHhhhcCCCCCceEEEEecCCCCCC-CCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHH
Q psy10250 175 HTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPSGQ-YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPEL 253 (387)
Q Consensus 175 ~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~-~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v 253 (387)
..--++++.+.++.+.+.++-.. ..+..+... ++|..+. .+.+.-..-++.+.+.||+.|=++=-.|.+ ....+
T Consensus 106 ~~iri~~~~~~~~~~~~~i~~ak-~~G~~v~~~-i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~---~P~~v 180 (275)
T cd07937 106 DIFRIFDALNDVRNLEVAIKAVK-KAGKHVEGA-ICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAGLL---TPYAA 180 (275)
T ss_pred CEEEEeecCChHHHHHHHHHHHH-HCCCeEEEE-EEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC---CHHHH
Confidence 45567888887777666553210 135666555 4777654 445555666788888999999776445543 36777
Q ss_pred HHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCC-CCC--CCCCChh
Q psy10250 254 FSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTST-GKE--KTNATIP 314 (387)
Q Consensus 254 ~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTST-Gf~--~~gat~~ 314 (387)
.+=++.+++..+ +-|+...=++.-.=..-+..|+++|+++|-+|- |.| .+++.+|
T Consensus 181 ~~lv~~l~~~~~------~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~GlG~~aGN~~~E 238 (275)
T cd07937 181 YELVKALKKEVG------LPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPLSGGTSQPSTE 238 (275)
T ss_pred HHHHHHHHHhCC------CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccCCcCChhHH
Confidence 777777776442 346665444433333346678899999999876 444 3455555
No 100
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=95.93 E-value=0.1 Score=53.44 Aligned_cols=151 Identities=22% Similarity=0.249 Sum_probs=74.7
Q ss_pred CCCC-CCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCC-CcceEEEEeeccCCChHHHHH
Q psy10250 210 GFPS-GQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGE-KIHMKTILAVGELKTSENIYC 287 (387)
Q Consensus 210 gFP~-G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~-~~~lKvIlEt~~L~t~e~i~~ 287 (387)
.-|- |.+....|+.+--..+..-.--.|.+-+-..=---+.+.+.+-|..++++.+. ++-+|+-. +.. .+.+.
T Consensus 146 AKpG~GG~Lp~~KV~~~ia~~R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~--~~~--~~~~~- 220 (368)
T PF01645_consen 146 AKPGEGGHLPGEKVTEEIARIRGVPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVA--GRG--VEDIA- 220 (368)
T ss_dssp TSTTT--EE-GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE---STT--HHHHH-
T ss_pred ccccCcceechhhchHHHHHHhCCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECC--CCc--HHHHH-
Confidence 4554 55555666655444444333334555443322223467788888899888854 34566644 222 23332
Q ss_pred HHHHHHHcCCCEEEcCCCCCCCCCChhhh---------HhHHHHHHHHHHH-cCCCceEeEeccCCCHHHHHHHHHHHHH
Q psy10250 288 ASMTAMFAGSDFIKTSTGKEKTNATIPAG---------IIMCSAIKHFHKL-SGKKIGLKPAGGISTFEDSVRWIYLVLI 357 (387)
Q Consensus 288 a~~ia~~aGaDfVKTSTGf~~~gat~~~~---------~~m~~~v~~~~~~-~~~~~gIKasGGIrt~~~a~~~i~l~~~ 357 (387)
..+.++|+|||--+=+-+..||++... ..+.++.+.+.+. ..+++.+=+|||++|..|+...+
T Consensus 221 --~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kal----- 293 (368)
T PF01645_consen 221 --AGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKAL----- 293 (368)
T ss_dssp --HHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHH-----
T ss_pred --HhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHH-----
Confidence 238899999996544445556665321 1122333333322 35678999999999999999999
Q ss_pred hcCCCccCCCcceeeccchH
Q psy10250 358 MLGPDWLNKDLFRIGASSLL 377 (387)
Q Consensus 358 ~~Ga~w~~~~~~RIGtSs~~ 377 (387)
.||||+ +-||+..++
T Consensus 294 aLGAD~-----v~igt~~li 308 (368)
T PF01645_consen 294 ALGADA-----VYIGTAALI 308 (368)
T ss_dssp HCT-SE-----EE-SHHHHH
T ss_pred hcCCCe-----eEecchhhh
Confidence 599963 555555443
No 101
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=95.91 E-value=0.89 Score=43.51 Aligned_cols=192 Identities=14% Similarity=0.107 Sum_probs=119.5
Q ss_pred CCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEecCCCCCCCCHHHH
Q psy10250 142 DDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLETR 221 (387)
Q Consensus 142 ~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~~e~K 221 (387)
+...+.|.+..+.|-.. .-.|-=|--.|..|+.+++. ++++||.-+ +.
T Consensus 23 NFd~~~V~~i~~AA~~g--------------gAt~vDIAadp~LV~~~~~~-------s~lPICVSa-----------Ve 70 (242)
T PF04481_consen 23 NFDAESVAAIVKAAEIG--------------GATFVDIAADPELVKLAKSL-------SNLPICVSA-----------VE 70 (242)
T ss_pred ccCHHHHHHHHHHHHcc--------------CCceEEecCCHHHHHHHHHh-------CCCCeEeec-----------CC
Confidence 45667787777777632 34455566688888888754 578887653 34
Q ss_pred HHHHHHHHHCCCCeeeeecCchhhh-cCC---hhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCC
Q psy10250 222 LHEIELLAKQKVDEVDIVIQRSLVL-NNQ---WPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGS 297 (387)
Q Consensus 222 ~~Ea~~Ai~~GAdEID~Vin~~~lk-~g~---~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGa 297 (387)
-.+.-.|++.|||-|++- |+..|- .|. .++|.+--++.|+.+++ .++-|-+.--+- =++|+ +.++...++|+
T Consensus 71 p~~f~~aV~AGAdliEIG-NfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~-~~LsVTVPHiL~-ld~Qv-~LA~~L~~~Ga 146 (242)
T PF04481_consen 71 PELFVAAVKAGADLIEIG-NFDSFYAQGRRFSAEEVLALTRETRSLLPD-ITLSVTVPHILP-LDQQV-QLAEDLVKAGA 146 (242)
T ss_pred HHHHHHHHHhCCCEEEec-chHHHHhcCCeecHHHHHHHHHHHHHhCCC-CceEEecCcccc-HHHHH-HHHHHHHHhCC
Confidence 466778999999999875 443332 222 13444444555666666 778887765432 34444 67777889999
Q ss_pred CEEEcCCCCCCCCCChh---hhHh---HHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCccee
Q psy10250 298 DFIKTSTGKEKTNATIP---AGII---MCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRI 371 (387)
Q Consensus 298 DfVKTSTGf~~~gat~~---~~~~---m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RI 371 (387)
|.|+|--|....+..+. -++- -+.+.-.+.+. -.+.|=-|-||.+..-=+++- +|+ .-|
T Consensus 147 DiIQTEGgtss~p~~~g~lglIekaapTLAaay~ISr~--v~iPVlcASGlS~vT~PmAia------aGA-------sGV 211 (242)
T PF04481_consen 147 DIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRA--VSIPVLCASGLSAVTAPMAIA------AGA-------SGV 211 (242)
T ss_pred cEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhc--cCCceEeccCcchhhHHHHHH------cCC-------ccc
Confidence 99999777644321111 0000 00111122222 246677778999888777776 787 689
Q ss_pred eccchHHHHHHHH
Q psy10250 372 GASSLLNNILQEL 384 (387)
Q Consensus 372 GtSs~~~il~~~~ 384 (387)
|..|.++-+..++
T Consensus 212 GVGSavn~Ln~~~ 224 (242)
T PF04481_consen 212 GVGSAVNRLNDEV 224 (242)
T ss_pred chhHHhhhcccHH
Confidence 9988887766554
No 102
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=95.88 E-value=0.36 Score=45.04 Aligned_cols=117 Identities=23% Similarity=0.250 Sum_probs=70.8
Q ss_pred HHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEc
Q psy10250 223 HEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKT 302 (387)
Q Consensus 223 ~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKT 302 (387)
.+++.+.+.|||-+=+ +...+. . ++++.+.+.+.. .-+.+++++. +.+++.+ +.+.|+||+=.
T Consensus 85 ~~v~~~~~~Gad~v~l--~~~~~~---~----~~~~~~~~~~~~-~g~~~~v~v~---~~~e~~~----~~~~g~~~i~~ 147 (217)
T cd00331 85 YQIYEARAAGADAVLL--IVAALD---D----EQLKELYELARE-LGMEVLVEVH---DEEELER----ALALGAKIIGI 147 (217)
T ss_pred HHHHHHHHcCCCEEEE--eeccCC---H----HHHHHHHHHHHH-cCCeEEEEEC---CHHHHHH----HHHcCCCEEEE
Confidence 3799999999997533 222221 1 344444444332 2356677775 4555543 55679999843
Q ss_pred CCCCCC--CCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeecc
Q psy10250 303 STGKEK--TNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 374 (387)
Q Consensus 303 STGf~~--~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtS 374 (387)
. |... .+..+ +.++.+++..+..+.+=+.|||++.+++.+++ .+|++ ..-+|++
T Consensus 148 t-~~~~~~~~~~~-------~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~-----~~Ga~-----gvivGsa 203 (217)
T cd00331 148 N-NRDLKTFEVDL-------NTTERLAPLIPKDVILVSESGISTPEDVKRLA-----EAGAD-----AVLIGES 203 (217)
T ss_pred e-CCCccccCcCH-------HHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHH-----HcCCC-----EEEECHH
Confidence 2 3211 11122 34555555554567788899999999999999 58874 3556654
No 103
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=95.82 E-value=0.071 Score=54.24 Aligned_cols=90 Identities=17% Similarity=0.232 Sum_probs=61.0
Q ss_pred HHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCc
Q psy10250 255 SEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKI 334 (387)
Q Consensus 255 ~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~ 334 (387)
++++.+++..+.+..+|-| + +.+. ++.+.++|+|+|--|-. + |-.+.....-++.+..+++..++++
T Consensus 211 ~~l~~lr~~~~~PvivKgv-----~-~~~d----A~~a~~~G~d~I~vsnh-G--Gr~ld~~~~~~~~l~~i~~a~~~~i 277 (351)
T cd04737 211 ADIEFIAKISGLPVIVKGI-----Q-SPED----ADVAINAGADGIWVSNH-G--GRQLDGGPASFDSLPEIAEAVNHRV 277 (351)
T ss_pred HHHHHHHHHhCCcEEEecC-----C-CHHH----HHHHHHcCCCEEEEeCC-C--CccCCCCchHHHHHHHHHHHhCCCC
Confidence 5677788766655778842 4 4432 36688999999977632 1 1111111111245666677777889
Q ss_pred eEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 335 GLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 335 gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
.|=++||||+..++.+.+ .+||+
T Consensus 278 ~vi~dGGIr~g~Di~kaL-----alGA~ 300 (351)
T cd04737 278 PIIFDSGVRRGEHVFKAL-----ASGAD 300 (351)
T ss_pred eEEEECCCCCHHHHHHHH-----HcCCC
Confidence 999999999999999999 58985
No 104
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=95.82 E-value=0.59 Score=46.16 Aligned_cols=140 Identities=13% Similarity=0.075 Sum_probs=89.0
Q ss_pred HHHHHHHHHHCCCCeeeeecCchhh-----hcCChhHHHHHHHHHHHHhCC-CcceEEEEeecc------CCChHHHHHH
Q psy10250 221 RLHEIELLAKQKVDEVDIVIQRSLV-----LNNQWPELFSEVKQMKEKCGE-KIHMKTILAVGE------LKTSENIYCA 288 (387)
Q Consensus 221 K~~Ea~~Ai~~GAdEID~Vin~~~l-----k~g~~~~v~~Ei~~v~~~~~~-~~~lKvIlEt~~------L~t~e~i~~a 288 (387)
+...++.|++.|.++|.+++..+.. .....+++.+++..+++.++. +..+.+-|.+.. -.+++.+.+.
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~ 160 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADV 160 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHH
Confidence 5677899999999999999888643 123466777788888887754 223332233211 2257788899
Q ss_pred HHHHHHcCCCEE--EcCCCCCCCCCChhhhHhHHHHHHHHHHHcCC-CceEeEec--cCCCHHHHHHHHHHHHHhcCCCc
Q psy10250 289 SMTAMFAGSDFI--KTSTGKEKTNATIPAGIIMCSAIKHFHKLSGK-KIGLKPAG--GISTFEDSVRWIYLVLIMLGPDW 363 (387)
Q Consensus 289 ~~ia~~aGaDfV--KTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~-~~gIKasG--GIrt~~~a~~~i~l~~~~~Ga~w 363 (387)
++.+.++|+|-| +-++|. ++|..+..+++.+ ++..++ .+++..=- |.-. ..++.-+ ++|++|
T Consensus 161 ~~~~~~~G~d~i~l~DT~G~----~~P~~v~~lv~~l---~~~~~~~~i~~H~Hn~~Gla~-AN~laA~-----~aG~~~ 227 (287)
T PRK05692 161 AERLFALGCYEISLGDTIGV----GTPGQVRAVLEAV---LAEFPAERLAGHFHDTYGQAL-ANIYASL-----EEGITV 227 (287)
T ss_pred HHHHHHcCCcEEEeccccCc----cCHHHHHHHHHHH---HHhCCCCeEEEEecCCCCcHH-HHHHHHH-----HhCCCE
Confidence 999999999965 556665 5787766654444 445542 34443311 1111 2223333 699999
Q ss_pred cCCCcceeec
Q psy10250 364 LNKDLFRIGA 373 (387)
Q Consensus 364 ~~~~~~RIGt 373 (387)
++....=||-
T Consensus 228 id~s~~GlGe 237 (287)
T PRK05692 228 FDASVGGLGG 237 (287)
T ss_pred EEEEccccCC
Confidence 8877776664
No 105
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.76 E-value=0.057 Score=49.95 Aligned_cols=113 Identities=17% Similarity=0.163 Sum_probs=71.3
Q ss_pred HHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEE
Q psy10250 221 RLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 300 (387)
Q Consensus 221 K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfV 300 (387)
-..|+.+|++-|||-||+=-+-.--+.-|+.+|.+||++++.. +.-+.-.+=..+|= +-.+..|+.=+.-+|+|||
T Consensus 9 n~eEA~eAieGGAdIiDVKNP~EGSLGANFPWvIr~i~Ev~p~--d~~vSAT~GDvpYK--PGT~slAalGaav~GaDYi 84 (235)
T COG1891 9 NREEAIEAIEGGADIIDVKNPAEGSLGANFPWVIREIREVVPE--DQEVSATVGDVPYK--PGTASLAALGAAVAGADYI 84 (235)
T ss_pred CHHHHHHHhhCCCceEeccCcccCcccCCChHHHHHHHHhCcc--ceeeeeeecCCCCC--CchHHHHHHHhHhhCCceE
Confidence 3679999999999999987554444456899999998887632 11123333444554 3456677777888999999
Q ss_pred EcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEec
Q psy10250 301 KTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAG 340 (387)
Q Consensus 301 KTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasG 340 (387)
|-.- |+.. .--++..+|..-+|..++. ....++=|+|
T Consensus 85 KVGL-Yg~k-n~~eA~e~m~~vvrAVkd~-d~~k~VVAaG 121 (235)
T COG1891 85 KVGL-YGTK-NEEEALEVMKNVVRAVKDF-DPSKKVVAAG 121 (235)
T ss_pred EEee-cccc-cHHHHHHHHHHHHHHHhcc-CCCceEEecc
Confidence 9643 2221 2234555565555554443 4445565655
No 106
>PLN02826 dihydroorotate dehydrogenase
Probab=95.76 E-value=0.15 Score=52.87 Aligned_cols=86 Identities=23% Similarity=0.295 Sum_probs=58.1
Q ss_pred cCCChHHHHHHHHHHHHcCCCEEEcC---CCC-----------CCCCCC-hhhhHhHHHHHHHHHHHcCCCceEeEeccC
Q psy10250 278 ELKTSENIYCASMTAMFAGSDFIKTS---TGK-----------EKTNAT-IPAGIIMCSAIKHFHKLSGKKIGLKPAGGI 342 (387)
Q Consensus 278 ~L~t~e~i~~a~~ia~~aGaDfVKTS---TGf-----------~~~gat-~~~~~~m~~~v~~~~~~~~~~~gIKasGGI 342 (387)
.+ +++++...++.+.++|+|-|--+ .+. ..+|-+ .+.-..-++.|+.+++.+++++.|=.+|||
T Consensus 272 dl-~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI 350 (409)
T PLN02826 272 DL-SKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGV 350 (409)
T ss_pred CC-CHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCC
Confidence 45 56778889999999999976321 110 011111 000111235677777888888999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCccCCCcceeecc
Q psy10250 343 STFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 374 (387)
Q Consensus 343 rt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtS 374 (387)
.|.+||.+++ .+||+ ..-+||+
T Consensus 351 ~sg~Da~e~i-----~AGAs-----~VQv~Ta 372 (409)
T PLN02826 351 SSGEDAYKKI-----RAGAS-----LVQLYTA 372 (409)
T ss_pred CCHHHHHHHH-----HhCCC-----eeeecHH
Confidence 9999999999 69985 4456665
No 107
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=95.72 E-value=0.2 Score=50.60 Aligned_cols=125 Identities=14% Similarity=0.122 Sum_probs=76.2
Q ss_pred HHHHHHHCCCCeeeeecCchhh----hcC---------------ChhHHHHHHHHHHHHhCCCcceEEEEeec---cCCC
Q psy10250 224 EIELLAKQKVDEVDIVIQRSLV----LNN---------------QWPELFSEVKQMKEKCGEKIHMKTILAVG---ELKT 281 (387)
Q Consensus 224 Ea~~Ai~~GAdEID~Vin~~~l----k~g---------------~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~---~L~t 281 (387)
-|+.|.+.|.|-|++=.--|+| +|- +...+.+=+.+|++++..++.+|+=.+-. =+ +
T Consensus 147 aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~-~ 225 (337)
T PRK13523 147 AAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGL-T 225 (337)
T ss_pred HHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCC-C
Confidence 4678888999999975442222 221 12334455567777774334455543211 13 4
Q ss_pred hHHHHHHHHHHHHcCCCEEEcCCCCCCCC--CChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHH
Q psy10250 282 SENIYCASMTAMFAGSDFIKTSTGKEKTN--ATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 353 (387)
Q Consensus 282 ~e~i~~a~~ia~~aGaDfVKTSTGf~~~g--at~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~ 353 (387)
.++....++...++|+|||-.|.|..... ...+. . ..+..+.+++.+ ++.|=++|+|+|+++|.+++.
T Consensus 226 ~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~-~-~~~~~~~ik~~~--~ipVi~~G~i~~~~~a~~~l~ 295 (337)
T PRK13523 226 VQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPG-Y-QVPFAEHIREHA--NIATGAVGLITSGAQAEEILQ 295 (337)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCcc-c-cHHHHHHHHhhc--CCcEEEeCCCCCHHHHHHHHH
Confidence 57777788888889999999998842110 10110 0 123445566553 355668899999999999994
No 108
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=95.70 E-value=1.3 Score=46.85 Aligned_cols=198 Identities=18% Similarity=0.113 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHcCCCEEecCCCCCCCCCCCcccccchhccccchhhhhhHHHHHHhhcccccccCC-----C-----C
Q psy10250 73 SENIYYASMTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEFIDLTTLS-----G-----D 142 (387)
Q Consensus 73 ~e~i~~a~~~a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ID~T~L~-----~-----~ 142 (387)
-+++...+....++|++.|-.. +|++-....++ ++ ++-.+.++++.+.+..+.+. + .
T Consensus 24 t~dkl~Ia~~Ld~~Gv~~IE~~-----ggatfd~~~~F----l~----e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~ 90 (467)
T PRK14041 24 TEDMLPALEAFDRMGFYSMEVW-----GGATFDVCVRF----LN----ENPWERLKEIRKRLKNTKIQMLLRGQNLVGYR 90 (467)
T ss_pred HHHHHHHHHHHHHcCCCEEEec-----CCccchhhhcc----cC----CCHHHHHHHHHHhCCCCEEEEEeccccccCcc
Confidence 4556667777789999999972 35543322232 11 11222344444444333331 1 1
Q ss_pred CCHHH-HHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEecCCCCC-CCCHHH
Q psy10250 143 DTEAV-VETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPSG-QYLLET 220 (387)
Q Consensus 143 ~T~~~-i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G-~~~~e~ 220 (387)
..++| ++.+++.|.. +....-.++.+.+.++..+...+-.. ..+..+... ++|=++ .++.+.
T Consensus 91 ~~~dDvv~~fv~~A~~--------------~Gvd~irif~~lnd~~n~~~~i~~ak-~~G~~v~~~-i~~t~~p~~t~e~ 154 (467)
T PRK14041 91 HYADDVVELFVKKVAE--------------YGLDIIRIFDALNDIRNLEKSIEVAK-KHGAHVQGA-ISYTVSPVHTLEY 154 (467)
T ss_pred cccchhhHHHHHHHHH--------------CCcCEEEEEEeCCHHHHHHHHHHHHH-HCCCEEEEE-EEeccCCCCCHHH
Confidence 23445 6777888872 13556677777877776665553210 134455544 354333 455666
Q ss_pred HHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEE
Q psy10250 221 RLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 300 (387)
Q Consensus 221 K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfV 300 (387)
=+.-++++.+.|||.|-+.=-.|.+ ....+++-++++++..+ +-|+...=+|.-.=..-+..|+++|+|+|
T Consensus 155 ~~~~a~~l~~~Gad~I~i~Dt~G~l---~P~~v~~Lv~~lk~~~~------vpI~~H~Hnt~GlA~AN~laAieaGad~v 225 (467)
T PRK14041 155 YLEFARELVDMGVDSICIKDMAGLL---TPKRAYELVKALKKKFG------VPVEVHSHCTTGLASLAYLAAVEAGADMF 225 (467)
T ss_pred HHHHHHHHHHcCCCEEEECCccCCc---CHHHHHHHHHHHHHhcC------CceEEEecCCCCcHHHHHHHHHHhCCCEE
Confidence 6677888999999998555334443 46778888888887542 34566555443333334566999999999
Q ss_pred EcCCC-CCC
Q psy10250 301 KTSTG-KEK 308 (387)
Q Consensus 301 KTSTG-f~~ 308 (387)
-||.+ |+.
T Consensus 226 D~sv~~~g~ 234 (467)
T PRK14041 226 DTAISPFSM 234 (467)
T ss_pred EeeccccCC
Confidence 99874 543
No 109
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=95.62 E-value=0.09 Score=53.54 Aligned_cols=86 Identities=26% Similarity=0.371 Sum_probs=59.0
Q ss_pred HHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCC-C-CC--CCCCChhhhHhHHHHHHHHHHHc
Q psy10250 255 SEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTST-G-KE--KTNATIPAGIIMCSAIKHFHKLS 330 (387)
Q Consensus 255 ~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTST-G-f~--~~gat~~~~~~m~~~v~~~~~~~ 330 (387)
++|+.+++..+.|.++|=| + +.+.. +.+.++|+|.|=.|- | -. ...+|+ +.+..+++.+
T Consensus 215 ~~i~~~~~~~~~pvivKgv-----~-~~~da----~~~~~~G~~~i~vs~hGGr~~d~~~~~~-------~~L~~i~~~~ 277 (356)
T PF01070_consen 215 DDIEWIRKQWKLPVIVKGV-----L-SPEDA----KRAVDAGVDGIDVSNHGGRQLDWGPPTI-------DALPEIRAAV 277 (356)
T ss_dssp HHHHHHHHHCSSEEEEEEE-------SHHHH----HHHHHTT-SEEEEESGTGTSSTTS-BHH-------HHHHHHHHHH
T ss_pred HHHHHHhcccCCceEEEec-----c-cHHHH----HHHHhcCCCEEEecCCCcccCccccccc-------cccHHHHhhh
Confidence 6688888887766788877 5 55544 567899999887763 2 11 112233 4566667777
Q ss_pred CCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 331 GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 331 ~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
++++.|=++||||+..|+.+.+ .+||+
T Consensus 278 ~~~~~i~~dgGir~g~Dv~kal-----aLGA~ 304 (356)
T PF01070_consen 278 GDDIPIIADGGIRRGLDVAKAL-----ALGAD 304 (356)
T ss_dssp TTSSEEEEESS--SHHHHHHHH-----HTT-S
T ss_pred cCCeeEEEeCCCCCHHHHHHHH-----HcCCC
Confidence 8999999999999999999999 49994
No 110
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=95.59 E-value=2 Score=40.46 Aligned_cols=221 Identities=16% Similarity=0.175 Sum_probs=124.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHcccCccEEEEEeccCCCCHHHHHHHHHH
Q psy10250 3 PSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGELKTSENIYYASMT 82 (387)
Q Consensus 3 P~G~~~~~~K~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~~~e~i~~a~~~ 82 (387)
+...-+++.|..=++...+.|.+.|++-+ ......+++ .++.+.+.... ..+-+..- . ..+.+..+.+.
T Consensus 7 ~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~--~~~~~~~~~----~v~~~~~~~~~-~~~~~~~~---~-~~~~i~~~~~~ 75 (237)
T PF00682_consen 7 NGVAFSTEEKLEIAKALDEAGVDYIEVGF--PFASEDDFE----QVRRLREALPN-ARLQALCR---A-NEEDIERAVEA 75 (237)
T ss_dssp CSTT--HHHHHHHHHHHHHHTTSEEEEEH--CTSSHHHHH----HHHHHHHHHHS-SEEEEEEE---S-CHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCCCEEEEcc--cccCHHHHH----Hhhhhhhhhcc-cccceeee---e-hHHHHHHHHHh
Confidence 34567889999999999999999999982 222223333 34445544443 22323222 2 56778888888
Q ss_pred HHHcCCCEEecCCCCCCCCCCCcccccchhccccchhhhhhHHHHHHhhcccccccCCCCCCHHHHHHHHHHhcCCCcHH
Q psy10250 83 AMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEE 162 (387)
Q Consensus 83 a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ID~T~L~~~~T~~~i~~l~~~A~~~~~~~ 162 (387)
+.+.|+|++......+ ..+ .... + ..+.+++...+.+++
T Consensus 76 ~~~~g~~~i~i~~~~s---------~~~------~~~~------------------~--~~~~~~~~~~~~~~v------ 114 (237)
T PF00682_consen 76 AKEAGIDIIRIFISVS---------DLH------IRKN------------------L--NKSREEALERIEEAV------ 114 (237)
T ss_dssp HHHTTSSEEEEEEETS---------HHH------HHHH------------------T--CSHHHHHHHHHHHHH------
T ss_pred hHhccCCEEEecCccc---------HHH------HHHh------------------h--cCCHHHHHHHHHHHH------
Confidence 8899999988543321 011 0000 0 123344433333333
Q ss_pred HHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEecCCCCCCCCHHHHHHH-HHHHHHCCCCeeeeecC
Q psy10250 163 LKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHE-IELLAKQKVDEVDIVIQ 241 (387)
Q Consensus 163 ~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~~e~K~~E-a~~Ai~~GAdEID~Vin 241 (387)
+.+++. +..+ . ++++....++...+.+ ++.+.+.|++.|=++=-
T Consensus 115 ------------------------~~ak~~--------g~~v--~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt 159 (237)
T PF00682_consen 115 ------------------------KYAKEL--------GYEV--A-FGCEDASRTDPEELLELAEALAEAGADIIYLADT 159 (237)
T ss_dssp ------------------------HHHHHT--------TSEE--E-EEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEET
T ss_pred ------------------------HHHHhc--------CCce--E-eCccccccccHHHHHHHHHHHHHcCCeEEEeeCc
Confidence 333321 3333 3 3777655555555555 55566679999966644
Q ss_pred chhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCC-CC--CCCCCChhhhHh
Q psy10250 242 RSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTST-GK--EKTNATIPAGII 318 (387)
Q Consensus 242 ~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTST-Gf--~~~gat~~~~~~ 318 (387)
.|.+ ..+.+.+=++.+++..++ +-|+...=++.-.=..-+..|+++|+|+|-||- |+ +.+++.+|.+..
T Consensus 160 ~G~~---~P~~v~~lv~~~~~~~~~-----~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~GlG~~~Gn~~le~lv~ 231 (237)
T PF00682_consen 160 VGIM---TPEDVAELVRALREALPD-----IPLGFHAHNDLGLAVANALAALEAGADRIDGTLGGLGERAGNAPLEELVA 231 (237)
T ss_dssp TS-S----HHHHHHHHHHHHHHSTT-----SEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGGSSTTSB-BHHHHHH
T ss_pred cCCc---CHHHHHHHHHHHHHhccC-----CeEEEEecCCccchhHHHHHHHHcCCCEEEccCccCCCCCCCccHHHHHH
Confidence 5543 477888888888887664 334444333333334457889999999999877 33 345666664433
No 111
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.55 E-value=0.14 Score=50.75 Aligned_cols=93 Identities=15% Similarity=0.200 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCC
Q psy10250 253 LFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGK 332 (387)
Q Consensus 253 v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~ 332 (387)
+.+-++.+++.++. ..|+.+|+.-+ +|..+ |.++|+|+|-=. +.+++.++.. ++.+++ ..+
T Consensus 182 i~~av~~~r~~~~~--~~~I~VEv~tl---eea~e----A~~~GaD~I~LD------n~~~e~l~~a---v~~~~~-~~~ 242 (288)
T PRK07428 182 IGEAITRIRQRIPY--PLTIEVETETL---EQVQE----ALEYGADIIMLD------NMPVDLMQQA---VQLIRQ-QNP 242 (288)
T ss_pred HHHHHHHHHHhCCC--CCEEEEECCCH---HHHHH----HHHcCCCEEEEC------CCCHHHHHHH---HHHHHh-cCC
Confidence 77788888877763 47999999855 45543 558999999643 4456544332 332222 256
Q ss_pred CceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccchH
Q psy10250 333 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLL 377 (387)
Q Consensus 333 ~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~~ 377 (387)
++.+=||||| |.+.+.+|. ..|+ +.|-+|++.
T Consensus 243 ~i~leAsGGI-t~~ni~~ya-----~tGv-------D~Isvgsl~ 274 (288)
T PRK07428 243 RVKIEASGNI-TLETIRAVA-----ETGV-------DYISSSAPI 274 (288)
T ss_pred CeEEEEECCC-CHHHHHHHH-----HcCC-------CEEEEchhh
Confidence 7899999999 799999998 5898 588887653
No 112
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.53 E-value=0.53 Score=47.23 Aligned_cols=128 Identities=20% Similarity=0.208 Sum_probs=79.8
Q ss_pred HHHHHHHHCCCCeeeeecCch----hh---------------hcCChhHHHHHHHHHHHHhCCC--cceEEEEe---ecc
Q psy10250 223 HEIELLAKQKVDEVDIVIQRS----LV---------------LNNQWPELFSEVKQMKEKCGEK--IHMKTILA---VGE 278 (387)
Q Consensus 223 ~Ea~~Ai~~GAdEID~Vin~~----~l---------------k~g~~~~v~~Ei~~v~~~~~~~--~~lKvIlE---t~~ 278 (387)
.-|+.|.+.|.|.|++=.--+ .+ ..++...+.+=|++|++++++. +.+|+=-+ -+-
T Consensus 153 ~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g 232 (338)
T cd04733 153 HAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGG 232 (338)
T ss_pred HHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCC
Confidence 346788889999999742211 11 1223456667888999999753 23333110 012
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCCh-----hh---hHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHH
Q psy10250 279 LKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATI-----PA---GIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVR 350 (387)
Q Consensus 279 L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~-----~~---~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~ 350 (387)
+ +.++-...++...++|+|||-.|.|........ .. --...+..+.+++.+ ++.|=+.|+|+|.+++.+
T Consensus 233 ~-~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v--~iPVi~~G~i~t~~~a~~ 309 (338)
T cd04733 233 F-TEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT--KTPLMVTGGFRTRAAMEQ 309 (338)
T ss_pred C-CHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHc--CCCEEEeCCCCCHHHHHH
Confidence 4 556666788888999999999888752211110 00 001123445566665 478899999999999999
Q ss_pred HHH
Q psy10250 351 WIY 353 (387)
Q Consensus 351 ~i~ 353 (387)
++.
T Consensus 310 ~l~ 312 (338)
T cd04733 310 ALA 312 (338)
T ss_pred HHH
Confidence 994
No 113
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=95.53 E-value=0.099 Score=53.77 Aligned_cols=90 Identities=22% Similarity=0.264 Sum_probs=61.3
Q ss_pred HHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCc
Q psy10250 255 SEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKI 334 (387)
Q Consensus 255 ~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~ 334 (387)
++|+.+++..+.+.++|=| + +.+. ++.++++|+|.|.-|- -+ |..+....--++.+..+.+.+++++
T Consensus 235 ~di~~lr~~~~~pvivKgV-----~-s~~d----A~~a~~~Gvd~I~Vs~-hG--Gr~~d~~~~t~~~L~~i~~a~~~~~ 301 (381)
T PRK11197 235 KDLEWIRDFWDGPMVIKGI-----L-DPED----ARDAVRFGADGIVVSN-HG--GRQLDGVLSSARALPAIADAVKGDI 301 (381)
T ss_pred HHHHHHHHhCCCCEEEEec-----C-CHHH----HHHHHhCCCCEEEECC-CC--CCCCCCcccHHHHHHHHHHHhcCCC
Confidence 6788888877655677766 5 4443 4667889999998773 22 2222211111134444455567789
Q ss_pred eEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 335 GLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 335 gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
.|=++||||+..|..+-+ .+||+
T Consensus 302 ~vi~dGGIr~g~Di~KAL-----aLGA~ 324 (381)
T PRK11197 302 TILADSGIRNGLDVVRMI-----ALGAD 324 (381)
T ss_pred eEEeeCCcCcHHHHHHHH-----HcCcC
Confidence 999999999999999999 48985
No 114
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=95.52 E-value=1 Score=46.06 Aligned_cols=142 Identities=15% Similarity=0.135 Sum_probs=94.3
Q ss_pred HHHHHHHHHHCCCCeeeeecCchhh-----hcCChhHHHHHHHHHHHHhCC-CcceEEEEeeccCCChHHHHHHHHHHHH
Q psy10250 221 RLHEIELLAKQKVDEVDIVIQRSLV-----LNNQWPELFSEVKQMKEKCGE-KIHMKTILAVGELKTSENIYCASMTAMF 294 (387)
Q Consensus 221 K~~Ea~~Ai~~GAdEID~Vin~~~l-----k~g~~~~v~~Ei~~v~~~~~~-~~~lKvIlEt~~L~t~e~i~~a~~ia~~ 294 (387)
+...++.|++.|++.|.+++..+-+ .....+++.+.+...++.+.. +..+-+-.|...-.+++.+.+.++.+.+
T Consensus 77 ~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~ 156 (378)
T PRK11858 77 VKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEE 156 (378)
T ss_pred CHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHh
Confidence 4556888999999999999887764 334567777877777777653 3455555666665578889999999999
Q ss_pred cCCCEEE--cCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEec--cCCCHHHHHHHHHHHHHhcCCCccCCCcce
Q psy10250 295 AGSDFIK--TSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAG--GISTFEDSVRWIYLVLIMLGPDWLNKDLFR 370 (387)
Q Consensus 295 aGaDfVK--TSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasG--GIrt~~~a~~~i~l~~~~~Ga~w~~~~~~R 370 (387)
+|+|-|- -++| .++|+.+..++..+ ++..+-.+++..-= |--+ ..++.-+ ++|++|++....=
T Consensus 157 ~Ga~~I~l~DT~G----~~~P~~v~~lv~~l---~~~~~~~l~~H~Hnd~GlA~-AN~laAv-----~aGa~~vd~tv~G 223 (378)
T PRK11858 157 AGADRVRFCDTVG----ILDPFTMYELVKEL---VEAVDIPIEVHCHNDFGMAT-ANALAGI-----EAGAKQVHTTVNG 223 (378)
T ss_pred CCCCEEEEeccCC----CCCHHHHHHHHHHH---HHhcCCeEEEEecCCcCHHH-HHHHHHH-----HcCCCEEEEeecc
Confidence 9999764 3444 47888776665444 44444445554421 1111 1223333 5999988877777
Q ss_pred eeccc
Q psy10250 371 IGASS 375 (387)
Q Consensus 371 IGtSs 375 (387)
||-.+
T Consensus 224 lGera 228 (378)
T PRK11858 224 LGERA 228 (378)
T ss_pred ccccc
Confidence 77653
No 115
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=95.50 E-value=0.04 Score=55.82 Aligned_cols=77 Identities=19% Similarity=0.148 Sum_probs=58.6
Q ss_pred HHHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHccc-CccEEEEEeccCCC------------CHHHHHH
Q psy10250 12 RLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEE-KIHMKTILAVGELK------------TSENIYY 78 (387)
Q Consensus 12 K~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~-~~~~KvIlEt~~L~------------~~e~i~~ 78 (387)
-...+++|++.|||-+=+-+|+| |..-..-.+|+.++++.|+. +.+ +|+.. |.. +.+.|..
T Consensus 148 l~~sVedAlrLGAdAV~~tvy~G---s~~E~~ml~~l~~i~~ea~~~GlP--lv~~~-YpRG~~i~~~~d~~~~~d~Ia~ 221 (348)
T PRK09250 148 LTASVEDALRLGAVAVGATIYFG---SEESRRQIEEISEAFEEAHELGLA--TVLWS-YLRNSAFKKDGDYHTAADLTGQ 221 (348)
T ss_pred ceecHHHHHHCCCCEEEEEEecC---CHHHHHHHHHHHHHHHHHHHhCCC--EEEEe-cccCcccCCcccccccHHHHHH
Confidence 34568999999999999999999 44446667789999988874 333 44432 221 1357899
Q ss_pred HHHHHHHcCCCEEecC
Q psy10250 79 ASMTAMFAGSDFIKTS 94 (387)
Q Consensus 79 a~~~a~~ag~dfvKTS 94 (387)
|+++|.+.|||+|||.
T Consensus 222 AaRiaaELGADIVKv~ 237 (348)
T PRK09250 222 ANHLAATIGADIIKQK 237 (348)
T ss_pred HHHHHHHHcCCEEEec
Confidence 9999999999999985
No 116
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=95.48 E-value=3.3 Score=41.87 Aligned_cols=131 Identities=13% Similarity=0.167 Sum_probs=86.7
Q ss_pred HHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCC--E
Q psy10250 222 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSD--F 299 (387)
Q Consensus 222 ~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaD--f 299 (387)
....+.|.+.|++.|-+..... +.+.+.+-++..++. +..+-+-++.+...+++.+...++.+.++|+| +
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~-----e~d~~~~~i~~ak~~---G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~ 161 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCT-----EADVSEQHIGMAREL---GMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVY 161 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccc-----hHHHHHHHHHHHHHc---CCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEE
Confidence 3568999999999998876543 234444444444432 24566677888777889999999999999999 5
Q ss_pred EEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCC--CceEeEeccCCCH--H--HHHHHHHHHHHhcCCCccCCCcceeec
Q psy10250 300 IKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGK--KIGLKPAGGISTF--E--DSVRWIYLVLIMLGPDWLNKDLFRIGA 373 (387)
Q Consensus 300 VKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~--~~gIKasGGIrt~--~--~a~~~i~l~~~~~Ga~w~~~~~~RIGt 373 (387)
|+=|.|. .+|+++..++. .+++..++ ++|+..= .|+ . .++..+ ++|++|++....=+|.
T Consensus 162 i~DT~G~----~~P~~v~~~v~---~l~~~l~~~i~ig~H~H---nnlGla~ANslaAi-----~aGa~~iD~Sl~G~G~ 226 (333)
T TIGR03217 162 IVDSAGA----MLPDDVRDRVR---ALKAVLKPETQVGFHAH---HNLSLAVANSIAAI-----EAGATRIDASLRGLGA 226 (333)
T ss_pred EccCCCC----CCHHHHHHHHH---HHHHhCCCCceEEEEeC---CCCchHHHHHHHHH-----HhCCCEEEeecccccc
Confidence 6667774 67887666544 44455553 3444431 222 2 233334 6999999888888887
Q ss_pred cc
Q psy10250 374 SS 375 (387)
Q Consensus 374 Ss 375 (387)
.+
T Consensus 227 ~a 228 (333)
T TIGR03217 227 GA 228 (333)
T ss_pred cc
Confidence 64
No 117
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.46 E-value=0.14 Score=50.58 Aligned_cols=92 Identities=24% Similarity=0.215 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHc-C
Q psy10250 253 LFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLS-G 331 (387)
Q Consensus 253 v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~-~ 331 (387)
+.+-++.++..++ ..|+.+|+.-| +|..+ ++++|+|.|-= . +.+++.++. .+..+++.. +
T Consensus 169 i~~av~~~r~~~~---~~kIeVEv~~l---eea~~----a~~agaDiI~L-D-----n~~~e~l~~---~v~~l~~~~~~ 229 (278)
T PRK08385 169 LEEAIRRAKEFSV---YKVVEVEVESL---EDALK----AAKAGADIIML-D-----NMTPEEIRE---VIEALKREGLR 229 (278)
T ss_pred HHHHHHHHHHhCC---CCcEEEEeCCH---HHHHH----HHHcCcCEEEE-C-----CCCHHHHHH---HHHHHHhcCcC
Confidence 5556666665444 36899999866 44433 56899998862 2 235654333 333333322 3
Q ss_pred CCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccch
Q psy10250 332 KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL 376 (387)
Q Consensus 332 ~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~ 376 (387)
+++.+=+|||| |.+...+|. ..|+ +.|.+|++
T Consensus 230 ~~~~leaSGGI-~~~ni~~yA-----~tGv-------D~Is~gal 261 (278)
T PRK08385 230 ERVKIEVSGGI-TPENIEEYA-----KLDV-------DVISLGAL 261 (278)
T ss_pred CCEEEEEECCC-CHHHHHHHH-----HcCC-------CEEEeChh
Confidence 67899999999 999999999 5898 58888864
No 118
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=95.37 E-value=1.2 Score=45.41 Aligned_cols=142 Identities=15% Similarity=0.114 Sum_probs=92.5
Q ss_pred HHHHHHHHHHCCCCeeeeecCchhhh-----cCChhHHHHHHHHHHHHhCC-CcceEEEEeeccCCChHHHHHHHHHHHH
Q psy10250 221 RLHEIELLAKQKVDEVDIVIQRSLVL-----NNQWPELFSEVKQMKEKCGE-KIHMKTILAVGELKTSENIYCASMTAMF 294 (387)
Q Consensus 221 K~~Ea~~Ai~~GAdEID~Vin~~~lk-----~g~~~~v~~Ei~~v~~~~~~-~~~lKvIlEt~~L~t~e~i~~a~~ia~~ 294 (387)
....++.|++.|++.|.+++..+-+. ....+++.+.+....+.+.. +..+-+-+|...-.+++.+.+.++.+.+
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~ 152 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEE 152 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHh
Confidence 35668889999999999998876442 23567777777777776653 3567777888776678889999999999
Q ss_pred cCCCEE--EcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEec--cCCCHHHHHHHHHHHHHhcCCCccCCCcce
Q psy10250 295 AGSDFI--KTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAG--GISTFEDSVRWIYLVLIMLGPDWLNKDLFR 370 (387)
Q Consensus 295 aGaDfV--KTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasG--GIrt~~~a~~~i~l~~~~~Ga~w~~~~~~R 370 (387)
+|+|-| +-++| .++|+.+..++..+ ++..+-.+++..-= |-- ...++.-+ ++|++|++....=
T Consensus 153 ~g~~~i~l~DT~G----~~~P~~v~~li~~l---~~~~~~~l~~H~Hnd~GlA-~AN~laA~-----~aGa~~vd~s~~G 219 (363)
T TIGR02090 153 AGADRINIADTVG----VLTPQKMEELIKKL---KENVKLPISVHCHNDFGLA-TANSIAGV-----KAGAEQVHVTVNG 219 (363)
T ss_pred CCCCEEEEeCCCC----ccCHHHHHHHHHHH---hcccCceEEEEecCCCChH-HHHHHHHH-----HCCCCEEEEEeec
Confidence 999965 44555 47787665554433 33333333333311 111 12233333 5899888777766
Q ss_pred eeccc
Q psy10250 371 IGASS 375 (387)
Q Consensus 371 IGtSs 375 (387)
+|-..
T Consensus 220 lGera 224 (363)
T TIGR02090 220 IGERA 224 (363)
T ss_pred ccccc
Confidence 76543
No 119
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=95.37 E-value=1.8 Score=44.01 Aligned_cols=195 Identities=14% Similarity=0.080 Sum_probs=113.2
Q ss_pred CCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEE-CCccHHH---HHHHhhhcCCCCCceEEEEecCCCCCCCC
Q psy10250 142 DDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCV-YPARVVD---VIKVLDRENARDDVKVASVAAGFPSGQYL 217 (387)
Q Consensus 142 ~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV-~P~~v~~---a~~~L~~~~~~~~v~v~tVvigFP~G~~~ 217 (387)
..|.++..++++.-. +.|+..+-+ +|..-+. +.+.+... ..+.++++. +-|
T Consensus 19 ~~s~~~k~~ia~~L~----------------~~Gv~~IEvG~p~~~~~~~e~i~~i~~~--~~~~~i~~~--~r~----- 73 (365)
T TIGR02660 19 AFTAAEKLAIARALD----------------EAGVDELEVGIPAMGEEERAVIRAIVAL--GLPARLMAW--CRA----- 73 (365)
T ss_pred CCCHHHHHHHHHHHH----------------HcCCCEEEEeCCCCCHHHHHHHHHHHHc--CCCcEEEEE--cCC-----
Confidence 356666666665554 456666655 3543331 12222221 234566554 222
Q ss_pred HHHHHHHHHHHHHCCCCeeeeecCchhh-----hcCChhHHHHHHHHHHHHhCC-CcceEEEEeeccCCChHHHHHHHHH
Q psy10250 218 LETRLHEIELLAKQKVDEVDIVIQRSLV-----LNNQWPELFSEVKQMKEKCGE-KIHMKTILAVGELKTSENIYCASMT 291 (387)
Q Consensus 218 ~e~K~~Ea~~Ai~~GAdEID~Vin~~~l-----k~g~~~~v~~Ei~~v~~~~~~-~~~lKvIlEt~~L~t~e~i~~a~~i 291 (387)
....++.|++.|++.|-+++..+-+ .....+++.+.+...++.+.. +..+-+=.|...-.+++.+.+.++.
T Consensus 74 ---~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~ 150 (365)
T TIGR02660 74 ---RDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEV 150 (365)
T ss_pred ---CHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHH
Confidence 2456788999999999999887642 223456666666666666543 3455666676666567888899999
Q ss_pred HHHcCCCEEE--cCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcc
Q psy10250 292 AMFAGSDFIK--TSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLF 369 (387)
Q Consensus 292 a~~aGaDfVK--TSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~ 369 (387)
+.++|+|.|- -++| .++|+.+..+++.+ ++..+-.+++..-=- .-+..|-.+..+ ++|++|++....
T Consensus 151 ~~~~Ga~~i~l~DT~G----~~~P~~v~~lv~~l---~~~~~v~l~~H~HNd-~GlA~ANalaA~---~aGa~~vd~tl~ 219 (365)
T TIGR02660 151 AAEAGADRFRFADTVG----ILDPFSTYELVRAL---RQAVDLPLEMHAHND-LGMATANTLAAV---RAGATHVNTTVN 219 (365)
T ss_pred HHHcCcCEEEEcccCC----CCCHHHHHHHHHHH---HHhcCCeEEEEecCC-CChHHHHHHHHH---HhCCCEEEEEee
Confidence 9999999764 3455 47887766655444 444333333332100 001222222221 689998877776
Q ss_pred eeeccc
Q psy10250 370 RIGASS 375 (387)
Q Consensus 370 RIGtSs 375 (387)
=||-.+
T Consensus 220 GiGera 225 (365)
T TIGR02660 220 GLGERA 225 (365)
T ss_pred cccccc
Confidence 677553
No 120
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=95.33 E-value=2.4 Score=41.50 Aligned_cols=140 Identities=16% Similarity=0.093 Sum_probs=85.5
Q ss_pred HHHHHHHHHCCCCeeeeecCchhh----h-cCChhHHHHHHHHHHHHhCC-CcceEEEEeecc------CCChHHHHHHH
Q psy10250 222 LHEIELLAKQKVDEVDIVIQRSLV----L-NNQWPELFSEVKQMKEKCGE-KIHMKTILAVGE------LKTSENIYCAS 289 (387)
Q Consensus 222 ~~Ea~~Ai~~GAdEID~Vin~~~l----k-~g~~~~v~~Ei~~v~~~~~~-~~~lKvIlEt~~------L~t~e~i~~a~ 289 (387)
...++.|++.|+++|.+++..+-. + ....+...+.+...++.++. +..+.+-+++.. -.+++.+.+.+
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~ 155 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVA 155 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHH
Confidence 457899999999999999887643 1 22335555555555555543 244554455432 22567788889
Q ss_pred HHHHHcCCCEE--EcCCCCCCCCCChhhhHhHHHHHHHHHHHcC-CCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCC
Q psy10250 290 MTAMFAGSDFI--KTSTGKEKTNATIPAGIIMCSAIKHFHKLSG-KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNK 366 (387)
Q Consensus 290 ~ia~~aGaDfV--KTSTGf~~~gat~~~~~~m~~~v~~~~~~~~-~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~ 366 (387)
+.+.+.|+|.| +-++|. ++|..+..++..+ ++..+ -.+++..=- =.-+..|..+..+ ++|++|++.
T Consensus 156 ~~~~~~Ga~~i~l~DT~G~----~~P~~v~~lv~~l---~~~~~~~~i~~H~Hn-d~GlA~AN~laA~---~aGa~~id~ 224 (274)
T cd07938 156 ERLLDLGCDEISLGDTIGV----ATPAQVRRLLEAV---LERFPDEKLALHFHD-TRGQALANILAAL---EAGVRRFDS 224 (274)
T ss_pred HHHHHcCCCEEEECCCCCc----cCHHHHHHHHHHH---HHHCCCCeEEEEECC-CCChHHHHHHHHH---HhCCCEEEE
Confidence 99999999965 556664 6788776665444 44554 234444321 1112222222221 699999987
Q ss_pred Ccceee
Q psy10250 367 DLFRIG 372 (387)
Q Consensus 367 ~~~RIG 372 (387)
...=||
T Consensus 225 t~~GlG 230 (274)
T cd07938 225 SVGGLG 230 (274)
T ss_pred eccccC
Confidence 777565
No 121
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=95.26 E-value=2.8 Score=39.76 Aligned_cols=202 Identities=18% Similarity=0.170 Sum_probs=114.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEecCCCCCCCCCCCcccccchhccccchhhhhhHHHHHHhhccc---ccccCCCCCCH
Q psy10250 69 ELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEFI---DLTTLSGDDTE 145 (387)
Q Consensus 69 ~L~~~e~i~~a~~~a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~I---D~T~L~~~~T~ 145 (387)
.+ +.+++.+..+...++|+++|--..|-.+ +..+.+ ++..+.++++.+.. -.+.|.+.- .
T Consensus 15 ~~-s~e~~~~i~~~L~~~GV~~IEvg~~~~~-----~~~p~~----------~~~~~~i~~l~~~~~~~~~~~l~~~~-~ 77 (265)
T cd03174 15 TF-STEDKLEIAEALDEAGVDSIEVGSGASP-----KAVPQM----------EDDWEVLRAIRKLVPNVKLQALVRNR-E 77 (265)
T ss_pred CC-CHHHHHHHHHHHHHcCCCEEEeccCcCc-----cccccC----------CCHHHHHHHHHhccCCcEEEEEccCc-h
Confidence 45 5677888888889999999996554321 111122 22223444454444 222223221 3
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCc--------------cHHHHHHHhhhcCCCCCceEEEEe-cC
Q psy10250 146 AVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPA--------------RVVDVIKVLDRENARDDVKVASVA-AG 210 (387)
Q Consensus 146 ~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~--------------~v~~a~~~L~~~~~~~~v~v~tVv-ig 210 (387)
+ .++.+.. .....-.++.+++ .+..+.+.++... ..+..+...+ ..
T Consensus 78 ~----~i~~a~~--------------~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~-~~G~~v~~~~~~~ 138 (265)
T cd03174 78 K----GIERALE--------------AGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAK-EAGLEVEGSLEDA 138 (265)
T ss_pred h----hHHHHHh--------------CCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH-HCCCeEEEEEEee
Confidence 3 3444441 0234455666655 4444444442210 1234332221 12
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHH
Q psy10250 211 FPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASM 290 (387)
Q Consensus 211 FP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ 290 (387)
|+. ..+.+.-..-++.+.+.|++.|=+.=-.|. -..+.+++=++.+++..++ +.|+...=++...-..-+.
T Consensus 139 ~~~-~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~---~~P~~v~~li~~l~~~~~~-----~~~~~H~Hn~~gla~an~l 209 (265)
T cd03174 139 FGC-KTDPEYVLEVAKALEEAGADEISLKDTVGL---ATPEEVAELVKALREALPD-----VPLGLHTHNTLGLAVANSL 209 (265)
T ss_pred cCC-CCCHHHHHHHHHHHHHcCCCEEEechhcCC---cCHHHHHHHHHHHHHhCCC-----CeEEEEeCCCCChHHHHHH
Confidence 221 367777778888999999999886655554 2456666667777765542 5677766655555555678
Q ss_pred HHHHcCCCEEEcCCC-CC--CCCCChhh
Q psy10250 291 TAMFAGSDFIKTSTG-KE--KTNATIPA 315 (387)
Q Consensus 291 ia~~aGaDfVKTSTG-f~--~~gat~~~ 315 (387)
.|+++|+++|-+|-+ .| .+++..|.
T Consensus 210 aA~~aG~~~id~s~~G~G~~~Gn~~~e~ 237 (265)
T cd03174 210 AALEAGADRVDGSVNGLGERAGNAATED 237 (265)
T ss_pred HHHHcCCCEEEeccccccccccCccHHH
Confidence 899999999998873 43 34566653
No 122
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=95.23 E-value=0.26 Score=51.11 Aligned_cols=114 Identities=17% Similarity=0.210 Sum_probs=65.5
Q ss_pred HHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcC
Q psy10250 224 EIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTS 303 (387)
Q Consensus 224 Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTS 303 (387)
.++.|++.||+-|-+.-. .+... +..+++.+.. .-+++++.. ++....+.+ .+.+.+.|+|||+.+
T Consensus 73 ~v~~a~~aGAdgV~v~g~------~~~~~----~~~~i~~a~~-~G~~~~~g~--~s~~t~~e~-~~~a~~~GaD~I~~~ 138 (430)
T PRK07028 73 EVEMAAKAGADIVCILGL------ADDST----IEDAVRAARK-YGVRLMADL--INVPDPVKR-AVELEELGVDYINVH 138 (430)
T ss_pred HHHHHHHcCCCEEEEecC------CChHH----HHHHHHHHHH-cCCEEEEEe--cCCCCHHHH-HHHHHhcCCCEEEEE
Confidence 778888999987654311 01111 2233333322 235777752 221122322 355678899999998
Q ss_pred CCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCc
Q psy10250 304 TGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 363 (387)
Q Consensus 304 TGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w 363 (387)
.||......+ ...+.++.+++.. .+.|=+.||| +.+++..++ .+|++.
T Consensus 139 pg~~~~~~~~----~~~~~l~~l~~~~--~iPI~a~GGI-~~~n~~~~l-----~aGAdg 186 (430)
T PRK07028 139 VGIDQQMLGK----DPLELLKEVSEEV--SIPIAVAGGL-DAETAAKAV-----AAGADI 186 (430)
T ss_pred eccchhhcCC----ChHHHHHHHHhhC--CCcEEEECCC-CHHHHHHHH-----HcCCCE
Confidence 8874211111 1123555555543 3778889999 678888888 589864
No 123
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=95.20 E-value=1.9 Score=41.58 Aligned_cols=192 Identities=9% Similarity=0.052 Sum_probs=115.8
Q ss_pred CCCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEE-CCccH----HHHHHHhhhcCCCCCceEEEEecCCCCC
Q psy10250 140 SGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCV-YPARV----VDVIKVLDRENARDDVKVASVAAGFPSG 214 (387)
Q Consensus 140 ~~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV-~P~~v----~~a~~~L~~~~~~~~v~v~tVvigFP~G 214 (387)
+...|.++..++++.-. +.|+..+-+ +|.+- ...+.+.+. ..++++.+.+ -|
T Consensus 14 ~~~~~~~~k~~i~~~L~----------------~~Gv~~iE~g~p~~~~~~~e~~~~l~~~---~~~~~~~~~~--r~-- 70 (259)
T cd07939 14 GVAFSREEKLAIARALD----------------EAGVDEIEVGIPAMGEEEREAIRAIVAL---GLPARLIVWC--RA-- 70 (259)
T ss_pred CCCCCHHHHHHHHHHHH----------------HcCCCEEEEecCCCCHHHHHHHHHHHhc---CCCCEEEEec--cC--
Confidence 34457777777766655 457766655 46542 223333221 2456654441 11
Q ss_pred CCCHHHHHHHHHHHHHCCCCeeeeecCchhhh-----cCChhHHHHHHHHHHHHhCC-CcceEEEEeeccCCChHHHHHH
Q psy10250 215 QYLLETRLHEIELLAKQKVDEVDIVIQRSLVL-----NNQWPELFSEVKQMKEKCGE-KIHMKTILAVGELKTSENIYCA 288 (387)
Q Consensus 215 ~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk-----~g~~~~v~~Ei~~v~~~~~~-~~~lKvIlEt~~L~t~e~i~~a 288 (387)
....++.|.+.|++.|-+++..+-.. ....++..+.+..+.+.++. +..+-+=+|...-.+++.+.+.
T Consensus 71 ------~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~ 144 (259)
T cd07939 71 ------VKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEF 144 (259)
T ss_pred ------CHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHH
Confidence 23456788999999999998665442 23445666677777776653 2344444555444468889999
Q ss_pred HHHHHHcCCCE--EEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCH----HHHHHHHHHHHHhcCCC
Q psy10250 289 SMTAMFAGSDF--IKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTF----EDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 289 ~~ia~~aGaDf--VKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~----~~a~~~i~l~~~~~Ga~ 362 (387)
++.+.++|+|- ++=++| .++|+.+..++..+ ++..+-++++..= .|+ ..++.-+ ++|++
T Consensus 145 ~~~~~~~G~~~i~l~DT~G----~~~P~~v~~lv~~l---~~~~~~~l~~H~H---n~~Gla~An~laAi-----~aG~~ 209 (259)
T cd07939 145 AEVAQEAGADRLRFADTVG----ILDPFTTYELIRRL---RAATDLPLEFHAH---NDLGLATANTLAAV-----RAGAT 209 (259)
T ss_pred HHHHHHCCCCEEEeCCCCC----CCCHHHHHHHHHHH---HHhcCCeEEEEec---CCCChHHHHHHHHH-----HhCCC
Confidence 99999999995 445666 47888776665444 4444433443331 122 2233333 69999
Q ss_pred ccCCCcceeeccc
Q psy10250 363 WLNKDLFRIGASS 375 (387)
Q Consensus 363 w~~~~~~RIGtSs 375 (387)
|++....=+|-.+
T Consensus 210 ~vd~s~~G~G~~a 222 (259)
T cd07939 210 HVSVTVNGLGERA 222 (259)
T ss_pred EEEEecccccccc
Confidence 9988888888764
No 124
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=95.19 E-value=2.1 Score=43.66 Aligned_cols=138 Identities=14% Similarity=0.154 Sum_probs=91.6
Q ss_pred HHHHHHHHHHCCCCeeeeecCchhhh-----cCChhHHHHHHHHHHHHhCC-CcceEEEEee-------ccCCChHHHHH
Q psy10250 221 RLHEIELLAKQKVDEVDIVIQRSLVL-----NNQWPELFSEVKQMKEKCGE-KIHMKTILAV-------GELKTSENIYC 287 (387)
Q Consensus 221 K~~Ea~~Ai~~GAdEID~Vin~~~lk-----~g~~~~v~~Ei~~v~~~~~~-~~~lKvIlEt-------~~L~t~e~i~~ 287 (387)
....++.|++.|+++|.+++..+-.. ....+++.+++..+++.+++ +..+.+-|.+ +.. +.+.+.+
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~-~~~~l~~ 201 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPV-PPSKVAY 201 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCC-CHHHHHH
Confidence 67889999999999999998765332 24568888888888888864 2344444544 223 5677888
Q ss_pred HHHHHHHcCCCEE--EcCCCCCCCCCChhhhHhHHHHHHHHHHHcCC-CceEeEec--cCCCHHHHHHHHHHHHHhcCCC
Q psy10250 288 ASMTAMFAGSDFI--KTSTGKEKTNATIPAGIIMCSAIKHFHKLSGK-KIGLKPAG--GISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 288 a~~ia~~aGaDfV--KTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~-~~gIKasG--GIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
.++.+.++|+|-| +-.+|. ++|..+..+++.+ ++..+. .+++..=- |--. ..++.-+ ++|++
T Consensus 202 ~~~~~~~~Gad~I~l~DT~G~----a~P~~v~~lv~~l---~~~~~~~~i~~H~Hnd~GlA~-AN~lAA~-----~aGa~ 268 (347)
T PLN02746 202 VAKELYDMGCYEISLGDTIGV----GTPGTVVPMLEAV---MAVVPVDKLAVHFHDTYGQAL-ANILVSL-----QMGIS 268 (347)
T ss_pred HHHHHHHcCCCEEEecCCcCC----cCHHHHHHHHHHH---HHhCCCCeEEEEECCCCChHH-HHHHHHH-----HhCCC
Confidence 9999999999976 445664 6787776665555 344443 34444311 1111 2222223 69999
Q ss_pred ccCCCcceee
Q psy10250 363 WLNKDLFRIG 372 (387)
Q Consensus 363 w~~~~~~RIG 372 (387)
|++....=||
T Consensus 269 ~vd~sv~GlG 278 (347)
T PLN02746 269 TVDSSVAGLG 278 (347)
T ss_pred EEEEeccccc
Confidence 9888888777
No 125
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=95.17 E-value=0.22 Score=51.26 Aligned_cols=102 Identities=21% Similarity=0.319 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHHHhCC-CcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCC---------hhhhHhH
Q psy10250 250 WPELFSEVKQMKEKCGE-KIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNAT---------IPAGIIM 319 (387)
Q Consensus 250 ~~~v~~Ei~~v~~~~~~-~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat---------~~~~~~m 319 (387)
.+.+.+-|+.+++..++ ++.+|..... +.++ +.+.+..+|+|||--|.+.+..++. ++-...+
T Consensus 198 ~~~l~~~I~~lr~~~~~~pV~vK~~~~~----~~~~---~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L 270 (392)
T cd02808 198 IEDLAQLIEDLREATGGKPIGVKLVAGH----GEGD---IAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGL 270 (392)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECCCC----CHHH---HHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHH
Confidence 35677888888887763 3445655431 3343 4455666789999766554433332 2211122
Q ss_pred HHHHHHHHHHc--CCCceEeEeccCCCHHHHHHHHHHHHHhcCCCcc
Q psy10250 320 CSAIKHFHKLS--GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 364 (387)
Q Consensus 320 ~~~v~~~~~~~--~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~ 364 (387)
. .+..+.... +.++.|=++|||||..|+.+.+ .+||+++
T Consensus 271 ~-~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kal-----aLGAd~V 311 (392)
T cd02808 271 A-RAHQALVKNGLRDRVSLIASGGLRTGADVAKAL-----ALGADAV 311 (392)
T ss_pred H-HHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHH-----HcCCCee
Confidence 1 222222222 3468899999999999999999 5999753
No 126
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=95.15 E-value=0.19 Score=51.55 Aligned_cols=86 Identities=16% Similarity=0.267 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCC-C-CCC--CCCChhhhHhHHHHHHHHHHHc
Q psy10250 255 SEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTST-G-KEK--TNATIPAGIIMCSAIKHFHKLS 330 (387)
Q Consensus 255 ~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTST-G-f~~--~gat~~~~~~m~~~v~~~~~~~ 330 (387)
++|+.+++..+.+..+| +.+ +.+ -++.+.++|+|.|--|. | -.. ..++. +.+..+++.+
T Consensus 218 ~~i~~l~~~~~~PvivK-----Gv~-~~e----da~~a~~~Gvd~I~VS~HGGrq~~~~~a~~-------~~L~ei~~av 280 (367)
T TIGR02708 218 RDIEEIAGYSGLPVYVK-----GPQ-CPE----DADRALKAGASGIWVTNHGGRQLDGGPAAF-------DSLQEVAEAV 280 (367)
T ss_pred HHHHHHHHhcCCCEEEe-----CCC-CHH----HHHHHHHcCcCEEEECCcCccCCCCCCcHH-------HHHHHHHHHh
Confidence 67888887776557788 333 333 34667899999875544 2 111 11222 3456666667
Q ss_pred CCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 331 GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 331 ~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
++++.|=++||||+..|+.+.+ .+|++
T Consensus 281 ~~~i~vi~dGGIr~g~Dv~KaL-----alGAd 307 (367)
T TIGR02708 281 DKRVPIVFDSGVRRGQHVFKAL-----ASGAD 307 (367)
T ss_pred CCCCcEEeeCCcCCHHHHHHHH-----HcCCC
Confidence 7889999999999999999999 48985
No 127
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.14 E-value=1.3 Score=41.04 Aligned_cols=160 Identities=17% Similarity=0.154 Sum_probs=95.0
Q ss_pred CCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEEC---CccHHHHHHHhhhcCCCCCceEEEEecCCCCCCCCH
Q psy10250 142 DDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVY---PARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLL 218 (387)
Q Consensus 142 ~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~---P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~~ 218 (387)
..+.++..+.++.+. +.|+..+=+. |....... .++.......+..+++.
T Consensus 20 ~~~~~~~~~~~~~~~----------------~~Gv~~vqlr~k~~~~~e~~~-~~~~~~~~~~~g~gtvl---------- 72 (187)
T PRK07455 20 APDLELGLQMAEAVA----------------AGGMRLIEITWNSDQPAELIS-QLREKLPECIIGTGTIL---------- 72 (187)
T ss_pred cCCHHHHHHHHHHHH----------------HCCCCEEEEeCCCCCHHHHHH-HHHHhCCCcEEeEEEEE----------
Confidence 348888999999988 6688888774 44333322 22211000112233442
Q ss_pred HHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCC
Q psy10250 219 ETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSD 298 (387)
Q Consensus 219 e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaD 298 (387)
. ..+++.|++.|||-+ .+|.++ .|+..+++..+ ...|+= -. |++|+.+ |.+.|+|
T Consensus 73 -~-~d~~~~A~~~gAdgv---------~~p~~~---~~~~~~~~~~~----~~~i~G--~~-t~~e~~~----A~~~Gad 127 (187)
T PRK07455 73 -T-LEDLEEAIAAGAQFC---------FTPHVD---PELIEAAVAQD----IPIIPG--AL-TPTEIVT----AWQAGAS 127 (187)
T ss_pred -c-HHHHHHHHHcCCCEE---------ECCCCC---HHHHHHHHHcC----CCEEcC--cC-CHHHHHH----HHHCCCC
Confidence 2 278999999999764 223333 23333433322 134443 24 6677754 4568999
Q ss_pred EEEcCCCCCCCCC-ChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccchH
Q psy10250 299 FIKTSTGKEKTNA-TIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLL 377 (387)
Q Consensus 299 fVKTSTGf~~~ga-t~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~~ 377 (387)
|||- |-.... .+ +-++.++... +.+.+=|.||| |.+.+..|+ .+|+ ..+|.+|.+
T Consensus 128 yv~~---Fpt~~~~G~-------~~l~~~~~~~-~~ipvvaiGGI-~~~n~~~~l-----~aGa-------~~vav~s~i 183 (187)
T PRK07455 128 CVKV---FPVQAVGGA-------DYIKSLQGPL-GHIPLIPTGGV-TLENAQAFI-----QAGA-------IAVGLSGQL 183 (187)
T ss_pred EEEE---CcCCcccCH-------HHHHHHHhhC-CCCcEEEeCCC-CHHHHHHHH-----HCCC-------eEEEEehhc
Confidence 9996 422111 12 3455555444 35889999999 779999999 5888 688887754
No 128
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=95.12 E-value=0.53 Score=45.79 Aligned_cols=118 Identities=16% Similarity=0.213 Sum_probs=74.3
Q ss_pred HHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcC
Q psy10250 224 EIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTS 303 (387)
Q Consensus 224 Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTS 303 (387)
++.+|.+.|||-|=+.... + + ..++.++.+.++. .-+-+++|+.-. ++..+ +.++|+|+|=.+
T Consensus 125 qi~~a~~~GAD~VlLi~~~--l-~------~~~l~~li~~a~~-lGl~~lvevh~~---~E~~~----A~~~gadiIgin 187 (260)
T PRK00278 125 QIYEARAAGADAILLIVAA--L-D------DEQLKELLDYAHS-LGLDVLVEVHDE---EELER----ALKLGAPLIGIN 187 (260)
T ss_pred HHHHHHHcCCCEEEEEecc--C-C------HHHHHHHHHHHHH-cCCeEEEEeCCH---HHHHH----HHHcCCCEEEEC
Confidence 7999999999986555433 2 1 1466666666654 348999998755 55644 568899999643
Q ss_pred CCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeecc
Q psy10250 304 TGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 374 (387)
Q Consensus 304 TGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtS 374 (387)
+..-....++ .+....+.+..++.+.+=+-|||.|.+++..+. .+|++ .+-+|++
T Consensus 188 -~rdl~~~~~d-----~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~-----~~Gad-----~vlVGsa 242 (260)
T PRK00278 188 -NRNLKTFEVD-----LETTERLAPLIPSDRLVVSESGIFTPEDLKRLA-----KAGAD-----AVLVGES 242 (260)
T ss_pred -CCCcccccCC-----HHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHH-----HcCCC-----EEEECHH
Confidence 3211111111 123344444444333333458999999999999 58974 5778876
No 129
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=95.10 E-value=0.31 Score=48.11 Aligned_cols=114 Identities=21% Similarity=0.254 Sum_probs=65.4
Q ss_pred HHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEE
Q psy10250 222 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 301 (387)
Q Consensus 222 ~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVK 301 (387)
..|++...+.|+|-||-- .....+.+.+..++.-. + .-++=. ..|.++- ..+.+.|+|||-
T Consensus 77 ~~Ea~~L~eaGvDiIDaT--------~r~rP~~~~~~~iK~~~-~---~l~MAD---~stleEa----l~a~~~Gad~I~ 137 (283)
T cd04727 77 FVEAQILEALGVDMIDES--------EVLTPADEEHHIDKHKF-K---VPFVCG---ARNLGEA----LRRISEGAAMIR 137 (283)
T ss_pred HHHHHHHHHcCCCEEecc--------CCCCcHHHHHHHHHHHc-C---CcEEcc---CCCHHHH----HHHHHCCCCEEE
Confidence 899999999999999822 11111344445554422 1 223333 3343433 347889999997
Q ss_pred cCCCCCCCCC---------------------Chhhh-------HhHHHHHHHHHHHcCCCceEe--EeccCCCHHHHHHH
Q psy10250 302 TSTGKEKTNA---------------------TIPAG-------IIMCSAIKHFHKLSGKKIGLK--PAGGISTFEDSVRW 351 (387)
Q Consensus 302 TSTGf~~~ga---------------------t~~~~-------~~m~~~v~~~~~~~~~~~gIK--asGGIrt~~~a~~~ 351 (387)
| ||.+..|. |.+-. ..=.+-++.+++.. ++.|= +-|||.|++++..+
T Consensus 138 T-Tl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~--~iPVV~iAeGGI~Tpena~~v 214 (283)
T cd04727 138 T-KGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLG--RLPVVNFAAGGVATPADAALM 214 (283)
T ss_pred e-cCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc--CCCeEEEEeCCCCCHHHHHHH
Confidence 5 44332222 11100 00112344444433 35665 89999999999999
Q ss_pred HHHHHHhcCCC
Q psy10250 352 IYLVLIMLGPD 362 (387)
Q Consensus 352 i~l~~~~~Ga~ 362 (387)
+ ++|++
T Consensus 215 ~-----e~GAd 220 (283)
T cd04727 215 M-----QLGAD 220 (283)
T ss_pred H-----HcCCC
Confidence 9 58984
No 130
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=95.10 E-value=0.18 Score=50.11 Aligned_cols=128 Identities=22% Similarity=0.127 Sum_probs=76.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCeeeeec----------CchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHH
Q psy10250 215 QYLLETRLHEIELLAKQKVDEVDIVI----------QRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSEN 284 (387)
Q Consensus 215 ~~~~e~K~~Ea~~Ai~~GAdEID~Vi----------n~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~ 284 (387)
.+..+.=..-++.+.+.|+++||+=+ ..|+-+-.+++.+.+=++++++.++-++.+|+=+ +.-.+.++
T Consensus 62 g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~--g~~~~~~~ 139 (309)
T PF01207_consen 62 GNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRL--GWDDSPEE 139 (309)
T ss_dssp -S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEES--ECT--CHH
T ss_pred eccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEeccc--ccccchhH
Confidence 34444444444555555999999732 2456666789999999999999887434455444 44444577
Q ss_pred HHHHHHHHHHcCCCEE--EcCCCC--CCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHH
Q psy10250 285 IYCASMTAMFAGSDFI--KTSTGK--EKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 353 (387)
Q Consensus 285 i~~a~~ia~~aGaDfV--KTSTGf--~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~ 353 (387)
....++...++|+++| .--|.. ..+.+.. +.|+.+++.++ +.|=+-|||.|++++.++++
T Consensus 140 ~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w-------~~i~~i~~~~~--ipvi~NGdI~s~~d~~~~~~ 203 (309)
T PF01207_consen 140 TIEFARILEDAGVSAITVHGRTRKQRYKGPADW-------EAIAEIKEALP--IPVIANGDIFSPEDAERMLE 203 (309)
T ss_dssp HHHHHHHHHHTT--EEEEECS-TTCCCTS---H-------HHHHHCHHC-T--SEEEEESS--SHHHHHHHCC
T ss_pred HHHHHHHhhhcccceEEEecCchhhcCCcccch-------HHHHHHhhccc--ceeEEcCccCCHHHHHHHHH
Confidence 8888999999999998 222322 1224444 45666666655 88889999999999999985
No 131
>PLN02535 glycolate oxidase
Probab=95.09 E-value=0.13 Score=52.58 Aligned_cols=89 Identities=19% Similarity=0.294 Sum_probs=60.5
Q ss_pred HHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcC-CCCCCCCCChhhhHhHHHHHHHHHHHcCCC
Q psy10250 255 SEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTS-TGKEKTNATIPAGIIMCSAIKHFHKLSGKK 333 (387)
Q Consensus 255 ~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTS-TGf~~~gat~~~~~~m~~~v~~~~~~~~~~ 333 (387)
++|+.+++..+.+..+|=| + +.++ ++.+.++|+|+|-.| +|-...+.++.- +..+..+++.++++
T Consensus 213 ~~i~~lr~~~~~PvivKgV-----~-~~~d----A~~a~~~GvD~I~vsn~GGr~~d~~~~t----~~~L~ev~~av~~~ 278 (364)
T PLN02535 213 KDIEWLRSITNLPILIKGV-----L-TRED----AIKAVEVGVAGIIVSNHGARQLDYSPAT----ISVLEEVVQAVGGR 278 (364)
T ss_pred HHHHHHHhccCCCEEEecC-----C-CHHH----HHHHHhcCCCEEEEeCCCcCCCCCChHH----HHHHHHHHHHHhcC
Confidence 5677787765545677766 4 4454 467889999999654 331111222221 23555666666778
Q ss_pred ceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 334 IGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 334 ~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
+.|=++||||+..++.+.+ .+||+
T Consensus 279 ipVi~dGGIr~g~Dv~KAL-----alGA~ 302 (364)
T PLN02535 279 VPVLLDGGVRRGTDVFKAL-----ALGAQ 302 (364)
T ss_pred CCEEeeCCCCCHHHHHHHH-----HcCCC
Confidence 9999999999999999999 59985
No 132
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=95.08 E-value=3.6 Score=43.29 Aligned_cols=198 Identities=17% Similarity=0.133 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHcCCCEEecCCCCCCCCCCCcccccchhccccchhhhhhHHHHHHhhcccccccCC---------CC-
Q psy10250 73 SENIYYASMTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEFIDLTTLS---------GD- 142 (387)
Q Consensus 73 ~e~i~~a~~~a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ID~T~L~---------~~- 142 (387)
-+++...+....++|++.|-.. +|+|.+..+++ +. ++-.+.++.+.+.+..|.+. ..
T Consensus 25 t~dkl~ia~~Ld~~Gv~~IE~~-----ggatf~~~~~f----~~----e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~ 91 (448)
T PRK12331 25 TEEMLPILEKLDNAGYHSLEMW-----GGATFDACLRF----LN----EDPWERLRKIRKAVKKTKLQMLLRGQNLLGYR 91 (448)
T ss_pred HHHHHHHHHHHHHcCCCEEEec-----CCccchhhhcc----CC----CCHHHHHHHHHHhCCCCEEEEEeccccccccc
Confidence 3556667777789999999972 24544433332 11 11222344444444444321 11
Q ss_pred -CCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEecCCCCC-CCCHHH
Q psy10250 143 -DTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPSG-QYLLET 220 (387)
Q Consensus 143 -~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G-~~~~e~ 220 (387)
...+-+++.++.|.. .....-.++.+.+++....+.++-.. ..+..+... ++|-.+ .++.+.
T Consensus 92 ~~pddvv~~~v~~A~~--------------~Gvd~irif~~lnd~~n~~~~v~~ak-~~G~~v~~~-i~~t~~p~~~~~~ 155 (448)
T PRK12331 92 NYADDVVESFVQKSVE--------------NGIDIIRIFDALNDVRNLETAVKATK-KAGGHAQVA-ISYTTSPVHTIDY 155 (448)
T ss_pred cCchhhHHHHHHHHHH--------------CCCCEEEEEEecCcHHHHHHHHHHHH-HcCCeEEEE-EEeecCCCCCHHH
Confidence 122335666677761 13456677777766665554442110 124333222 233322 366777
Q ss_pred HHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEE
Q psy10250 221 RLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 300 (387)
Q Consensus 221 K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfV 300 (387)
=+.-++++.+.|||.|=+.=-.|.+ ....+++=++++++..+ +-|+...=+|.-.=..-+..|+++|+|+|
T Consensus 156 ~~~~a~~l~~~Gad~I~i~Dt~G~l---~P~~v~~lv~alk~~~~------~pi~~H~Hnt~GlA~AN~laAieaGad~v 226 (448)
T PRK12331 156 FVKLAKEMQEMGADSICIKDMAGIL---TPYVAYELVKRIKEAVT------VPLEVHTHATSGIAEMTYLKAIEAGADII 226 (448)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCC---CHHHHHHHHHHHHHhcC------CeEEEEecCCCCcHHHHHHHHHHcCCCEE
Confidence 7778999999999998666334432 46778888888876542 33565544443333334566899999999
Q ss_pred EcCCC-CCC
Q psy10250 301 KTSTG-KEK 308 (387)
Q Consensus 301 KTSTG-f~~ 308 (387)
-||.+ ++.
T Consensus 227 D~sv~glg~ 235 (448)
T PRK12331 227 DTAISPFAG 235 (448)
T ss_pred EeeccccCC
Confidence 99874 543
No 133
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=95.08 E-value=2.2 Score=41.34 Aligned_cols=190 Identities=14% Similarity=0.080 Sum_probs=109.5
Q ss_pred CCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEEC-Cc----cHHHHHHHhhhcCCCCCceEEEEecCCCCCCC
Q psy10250 142 DDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVY-PA----RVVDVIKVLDRENARDDVKVASVAAGFPSGQY 216 (387)
Q Consensus 142 ~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~-P~----~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~ 216 (387)
..+.++..++++.-. +.||..+-+- |. -...++ .+... ..++++.+.+ +
T Consensus 16 ~~~~~~k~~i~~~L~----------------~~Gv~~iEvg~~~~~~~~~~~~~-~l~~~--~~~~~~~~l~---r---- 69 (268)
T cd07940 16 SLTPEEKLEIARQLD----------------ELGVDVIEAGFPAASPGDFEAVK-RIARE--VLNAEICGLA---R---- 69 (268)
T ss_pred CCCHHHHHHHHHHHH----------------HcCCCEEEEeCCCCCHHHHHHHH-HHHHh--CCCCEEEEEc---c----
Confidence 456777777776655 5577776652 22 122222 23221 2356766552 1
Q ss_pred CHHHHHHHHHHHHHCC----CCeeeeecCchhhh-----cCChhHHHHHHHHHHHHhCC-CcceEEEEeeccCCChHHHH
Q psy10250 217 LLETRLHEIELLAKQK----VDEVDIVIQRSLVL-----NNQWPELFSEVKQMKEKCGE-KIHMKTILAVGELKTSENIY 286 (387)
Q Consensus 217 ~~e~K~~Ea~~Ai~~G----AdEID~Vin~~~lk-----~g~~~~v~~Ei~~v~~~~~~-~~~lKvIlEt~~L~t~e~i~ 286 (387)
.....++.|.+.| ++.|.+++..+-.. ....+...+.+..+++.++. +..+-+=.|...-.+++.+.
T Consensus 70 ---~~~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~ 146 (268)
T cd07940 70 ---AVKKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLI 146 (268)
T ss_pred ---CCHhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHH
Confidence 1245577888888 99999997664432 22344555666666665543 22333334444444678888
Q ss_pred HHHHHHHHcCCCEE--EcCCCCCCCCCChhhhHhHHHHHHHHHHHcCC---CceEeEeccCCCHHH----HHHHHHHHHH
Q psy10250 287 CASMTAMFAGSDFI--KTSTGKEKTNATIPAGIIMCSAIKHFHKLSGK---KIGLKPAGGISTFED----SVRWIYLVLI 357 (387)
Q Consensus 287 ~a~~ia~~aGaDfV--KTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~---~~gIKasGGIrt~~~----a~~~i~l~~~ 357 (387)
..++.+.++|+|-| +=++|. ++|+.+..++..+ ++..++ .+++..- .|+-. ++.-+
T Consensus 147 ~~~~~~~~~G~~~i~l~DT~G~----~~P~~v~~lv~~l---~~~~~~~~i~l~~H~H---n~~GlA~An~laAi----- 211 (268)
T cd07940 147 EVVEAAIEAGATTINIPDTVGY----LTPEEFGELIKKL---KENVPNIKVPISVHCH---NDLGLAVANSLAAV----- 211 (268)
T ss_pred HHHHHHHHcCCCEEEECCCCCC----CCHHHHHHHHHHH---HHhCCCCceeEEEEec---CCcchHHHHHHHHH-----
Confidence 89999999999954 445553 6888776655444 455543 3333331 22222 23333
Q ss_pred hcCCCccCCCcceeeccc
Q psy10250 358 MLGPDWLNKDLFRIGASS 375 (387)
Q Consensus 358 ~~Ga~w~~~~~~RIGtSs 375 (387)
++|++|++....=+|-.+
T Consensus 212 ~aG~~~iD~s~~GlG~~a 229 (268)
T cd07940 212 EAGARQVECTINGIGERA 229 (268)
T ss_pred HhCCCEEEEEeecccccc
Confidence 589998887777776543
No 134
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=95.05 E-value=1.5 Score=41.33 Aligned_cols=197 Identities=13% Similarity=0.102 Sum_probs=116.1
Q ss_pred CCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEEC-Ccc----HHHHHHHhhhcCCCCCceEEEEecCCCCCCCC
Q psy10250 143 DTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVY-PAR----VVDVIKVLDRENARDDVKVASVAAGFPSGQYL 217 (387)
Q Consensus 143 ~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~-P~~----v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~ 217 (387)
.+.++..++++.-. +.|+..+.+. |.. .+..++..+.. ...++.+.. - ..
T Consensus 11 ~~~~~k~~i~~~L~----------------~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~---~~~~~~~~~-~-----~~ 65 (237)
T PF00682_consen 11 FSTEEKLEIAKALD----------------EAGVDYIEVGFPFASEDDFEQVRRLREAL---PNARLQALC-R-----AN 65 (237)
T ss_dssp --HHHHHHHHHHHH----------------HHTTSEEEEEHCTSSHHHHHHHHHHHHHH---HSSEEEEEE-E-----SC
T ss_pred cCHHHHHHHHHHHH----------------HhCCCEEEEcccccCHHHHHHhhhhhhhh---cccccceee-e-----eh
Confidence 56666666666554 4577888887 543 33333333221 246666663 2 22
Q ss_pred HHHHHHHHHHHHHCCCCeeeeecCchhh-----hcCChhHHHHHHHHHHHHhCC-CcceEEEEeeccCCChHHHHHHHHH
Q psy10250 218 LETRLHEIELLAKQKVDEVDIVIQRSLV-----LNNQWPELFSEVKQMKEKCGE-KIHMKTILAVGELKTSENIYCASMT 291 (387)
Q Consensus 218 ~e~K~~Ea~~Ai~~GAdEID~Vin~~~l-----k~g~~~~v~~Ei~~v~~~~~~-~~~lKvIlEt~~L~t~e~i~~a~~i 291 (387)
.+.-..-.+.+.+.|++.|.+.+..+-+ ....+++..+.+..+++.++. +..+-+=+|...-.+++.+.+.++.
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~ 145 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEA 145 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHH
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHH
Confidence 2222222445666999999999887652 223557777888888877753 2345555555555578999999999
Q ss_pred HHHcCCCE--EEcCCCCCCCCCChhhhHhHHHHHHHHHHHcC-CCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCc
Q psy10250 292 AMFAGSDF--IKTSTGKEKTNATIPAGIIMCSAIKHFHKLSG-KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDL 368 (387)
Q Consensus 292 a~~aGaDf--VKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~-~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~ 368 (387)
+.++|+|- ++=+.|. .+|+.+.-+ ++.+++..+ ..+++..---- -+..|..+..+ ++|++|++...
T Consensus 146 ~~~~g~~~i~l~Dt~G~----~~P~~v~~l---v~~~~~~~~~~~l~~H~Hnd~-Gla~An~laA~---~aGa~~id~t~ 214 (237)
T PF00682_consen 146 LAEAGADIIYLADTVGI----MTPEDVAEL---VRALREALPDIPLGFHAHNDL-GLAVANALAAL---EAGADRIDGTL 214 (237)
T ss_dssp HHHHT-SEEEEEETTS-----S-HHHHHHH---HHHHHHHSTTSEEEEEEBBTT-S-HHHHHHHHH---HTT-SEEEEBG
T ss_pred HHHcCCeEEEeeCccCC----cCHHHHHHH---HHHHHHhccCCeEEEEecCCc-cchhHHHHHHH---HcCCCEEEccC
Confidence 99999994 4556664 577776655 455566677 56777764322 12233333222 69999887777
Q ss_pred ceeeccc
Q psy10250 369 FRIGASS 375 (387)
Q Consensus 369 ~RIGtSs 375 (387)
.=+|-++
T Consensus 215 ~GlG~~~ 221 (237)
T PF00682_consen 215 GGLGERA 221 (237)
T ss_dssp GGGSSTT
T ss_pred ccCCCCC
Confidence 7677655
No 135
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=94.99 E-value=0.12 Score=51.18 Aligned_cols=114 Identities=24% Similarity=0.281 Sum_probs=62.7
Q ss_pred HHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEE
Q psy10250 222 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 301 (387)
Q Consensus 222 ~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVK 301 (387)
..|++...+.|+|-||- +..+. ...+.+..++... ++.+ .|--.|.++- .-+++.|+|||-
T Consensus 86 ~~Ea~~L~~~GvDiID~----Te~lr----pad~~~~~~K~~f------~~~f-mad~~~l~EA----lrai~~GadmI~ 146 (293)
T PRK04180 86 FVEAQILEALGVDYIDE----SEVLT----PADEEYHIDKWDF------TVPF-VCGARNLGEA----LRRIAEGAAMIR 146 (293)
T ss_pred HHHHHHHHHcCCCEEec----cCCCC----chHHHHHHHHHHc------CCCE-EccCCCHHHH----HHHHHCCCCeee
Confidence 88999999999999982 11121 1333444444322 2222 2223343332 347889999998
Q ss_pred cCCCCCCCCC---ChhhhHhHHHHHHH-------------------------HHHHcCCCceEe--EeccCCCHHHHHHH
Q psy10250 302 TSTGKEKTNA---TIPAGIIMCSAIKH-------------------------FHKLSGKKIGLK--PAGGISTFEDSVRW 351 (387)
Q Consensus 302 TSTGf~~~ga---t~~~~~~m~~~v~~-------------------------~~~~~~~~~gIK--asGGIrt~~~a~~~ 351 (387)
|- |-...|- .+.|.+.+...|+. +++. .++.|= +.|||.|++++..+
T Consensus 147 Tt-ge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~--~~iPVV~~AeGGI~TPedaa~v 223 (293)
T PRK04180 147 TK-GEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAEL--GRLPVVNFAAGGIATPADAALM 223 (293)
T ss_pred cc-CCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHh--CCCCEEEEEeCCCCCHHHHHHH
Confidence 64 2211111 11122222222222 2221 134554 78999999999999
Q ss_pred HHHHHHhcCCC
Q psy10250 352 IYLVLIMLGPD 362 (387)
Q Consensus 352 i~l~~~~~Ga~ 362 (387)
+ ++|++
T Consensus 224 m-----e~GAd 229 (293)
T PRK04180 224 M-----QLGAD 229 (293)
T ss_pred H-----HhCCC
Confidence 9 58984
No 136
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=94.90 E-value=0.64 Score=47.42 Aligned_cols=176 Identities=19% Similarity=0.229 Sum_probs=106.7
Q ss_pred HHHhhcccccccCCCCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEE
Q psy10250 127 LLKIIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVAS 206 (387)
Q Consensus 127 ~~~l~~~ID~T~L~~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~t 206 (387)
+..++++==+..|..+.+.++-.+.+++.+ ++ .+.+.+ +. .....|++
T Consensus 54 Aiama~~Gglgvih~~~~~e~q~~~v~~vK----------------~~-----------~~~a~~--d~---~~~l~V~a 101 (352)
T PF00478_consen 54 AIAMARLGGLGVIHRNMSIEEQAEEVKKVK----------------RY-----------YPNASK--DE---KGRLLVAA 101 (352)
T ss_dssp HHHHHHTTSEEEEESSSCHHHHHHHHHHHH----------------TH-----------HTTHHB--HT---TSCBCEEE
T ss_pred HHHHHHhcCCceecCCCCHHHHHHHHhhhc----------------cc-----------cccccc--cc---cccceEEE
Confidence 345555555566666777777777777766 22 222221 11 23566777
Q ss_pred EecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHH
Q psy10250 207 VAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIY 286 (387)
Q Consensus 207 VvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~ 286 (387)
.+ |-.. .-..-++..++.|+|-| ||+.. .|+-+.+.+-++.+++..++ +-||.=. .-|.|
T Consensus 102 av-g~~~------~~~er~~~L~~agvD~i--vID~a---~g~s~~~~~~ik~ik~~~~~---~~viaGN--V~T~e--- 161 (352)
T PF00478_consen 102 AV-GTRD------DDFERAEALVEAGVDVI--VIDSA---HGHSEHVIDMIKKIKKKFPD---VPVIAGN--VVTYE--- 161 (352)
T ss_dssp EE-ESST------CHHHHHHHHHHTT-SEE--EEE-S---STTSHHHHHHHHHHHHHSTT---SEEEEEE--E-SHH---
T ss_pred Ee-cCCH------HHHHHHHHHHHcCCCEE--Ecccc---CccHHHHHHHHHHHHHhCCC---ceEEecc--cCCHH---
Confidence 74 5432 12445566777899874 77765 48889999999999987763 6677544 33544
Q ss_pred HHHHHHHHcCCCEEEcCCCCCCC-------CCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhc
Q psy10250 287 CASMTAMFAGSDFIKTSTGKEKT-------NATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIML 359 (387)
Q Consensus 287 ~a~~ia~~aGaDfVKTSTGf~~~-------gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~ 359 (387)
+++-.+++|||.||-.-|=+.. |...++.-.+. ++....+ ...+.|=|=||||+.-|..+-+ .+
T Consensus 162 -~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~-~~a~~a~--~~~v~iIADGGi~~sGDi~KAl-----a~ 232 (352)
T PF00478_consen 162 -GAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVY-ECAEAAR--DYGVPIIADGGIRTSGDIVKAL-----AA 232 (352)
T ss_dssp -HHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHH-HHHHHHH--CTTSEEEEESS-SSHHHHHHHH-----HT
T ss_pred -HHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHH-HHHHHhh--hccCceeecCCcCcccceeeee-----ee
Confidence 5566899999999988875442 22233333332 2333322 2368899999999999988888 48
Q ss_pred CCCc
Q psy10250 360 GPDW 363 (387)
Q Consensus 360 Ga~w 363 (387)
||+|
T Consensus 233 GAd~ 236 (352)
T PF00478_consen 233 GADA 236 (352)
T ss_dssp T-SE
T ss_pred cccc
Confidence 9975
No 137
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=94.87 E-value=3.3 Score=39.88 Aligned_cols=99 Identities=10% Similarity=0.105 Sum_probs=65.2
Q ss_pred cCCCCCCCC-HHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHH
Q psy10250 209 AGFPSGQYL-LETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYC 287 (387)
Q Consensus 209 igFP~G~~~-~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~ 287 (387)
+++|.+... .+.-+.-++.+.+.|++.|=++=-.|.+ ..+.+++-+..+++..+ +-|+...=++...=..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~---~P~~v~~lv~~l~~~~~------~~l~~H~Hn~~Gla~A 198 (259)
T cd07939 128 VGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVGIL---DPFTTYELIRRLRAATD------LPLEFHAHNDLGLATA 198 (259)
T ss_pred EeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCCCC---CHHHHHHHHHHHHHhcC------CeEEEEecCCCChHHH
Confidence 388876655 5555555677788899998666556643 46777777777776442 3356665555443334
Q ss_pred HHHHHHHcCCCEEEcCC-CCC--CCCCChhhh
Q psy10250 288 ASMTAMFAGSDFIKTST-GKE--KTNATIPAG 316 (387)
Q Consensus 288 a~~ia~~aGaDfVKTST-Gf~--~~gat~~~~ 316 (387)
-+..|+++|+++|-+|- |.| .+++..|.+
T Consensus 199 n~laAi~aG~~~vd~s~~G~G~~aGN~~tE~l 230 (259)
T cd07939 199 NTLAAVRAGATHVSVTVNGLGERAGNAALEEV 230 (259)
T ss_pred HHHHHHHhCCCEEEEecccccccccCcCHHHH
Confidence 46779999999999887 343 345666543
No 138
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=94.82 E-value=5.1 Score=40.49 Aligned_cols=147 Identities=12% Similarity=0.130 Sum_probs=93.2
Q ss_pred CCceEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccC
Q psy10250 200 DDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGEL 279 (387)
Q Consensus 200 ~~v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L 279 (387)
.+.++++.. - | |..+ ...++.|.+.|++.|-+..... +.+...+-++.+++ . +..+-+-++.+..
T Consensus 76 ~~~~~~~ll-~-p-g~~~----~~dl~~a~~~gvd~iri~~~~~-----e~~~~~~~i~~ak~-~--G~~v~~~l~~a~~ 140 (337)
T PRK08195 76 KQAKIAALL-L-P-GIGT----VDDLKMAYDAGVRVVRVATHCT-----EADVSEQHIGLARE-L--GMDTVGFLMMSHM 140 (337)
T ss_pred CCCEEEEEe-c-c-Cccc----HHHHHHHHHcCCCEEEEEEecc-----hHHHHHHHHHHHHH-C--CCeEEEEEEeccC
Confidence 356777652 2 3 2222 3568999999999988876443 23344444444443 2 2467777888877
Q ss_pred CChHHHHHHHHHHHHcCCCE--EEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCC--CceEeEeccCCCH----HHHHHH
Q psy10250 280 KTSENIYCASMTAMFAGSDF--IKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGK--KIGLKPAGGISTF----EDSVRW 351 (387)
Q Consensus 280 ~t~e~i~~a~~ia~~aGaDf--VKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~--~~gIKasGGIrt~----~~a~~~ 351 (387)
.+++.+.+.++.+.+.|+|- ++=|.|. .+|+++..++. .+++..++ ++++.. =.|+ ..++..
T Consensus 141 ~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~----~~P~~v~~~v~---~l~~~l~~~i~ig~H~---HnnlGla~ANslaA 210 (337)
T PRK08195 141 APPEKLAEQAKLMESYGAQCVYVVDSAGA----LLPEDVRDRVR---ALRAALKPDTQVGFHG---HNNLGLGVANSLAA 210 (337)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeCCCCCC----CCHHHHHHHHH---HHHHhcCCCCeEEEEe---CCCcchHHHHHHHH
Confidence 78899999999999999995 4556664 68887666544 44455533 333332 1222 223333
Q ss_pred HHHHHHhcCCCccCCCcceeeccch
Q psy10250 352 IYLVLIMLGPDWLNKDLFRIGASSL 376 (387)
Q Consensus 352 i~l~~~~~Ga~w~~~~~~RIGtSs~ 376 (387)
+ ++|++|++....=+|..++
T Consensus 211 i-----~aGa~~iD~Sl~GlG~~aG 230 (337)
T PRK08195 211 V-----EAGATRIDGSLAGLGAGAG 230 (337)
T ss_pred H-----HhCCCEEEecChhhccccc
Confidence 4 6999999888888887653
No 139
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=94.82 E-value=0.41 Score=46.89 Aligned_cols=196 Identities=17% Similarity=0.212 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHcCCCEEecCCCCCCCCCCCcccccchhccc-cchhhhhhHHHHHHhhcccccccCCCCCCHHHHHHHH
Q psy10250 74 ENIYYASMTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAV-DLSRLKNKKSLLLKIIEFIDLTTLSGDDTEAVVETLT 152 (387)
Q Consensus 74 e~i~~a~~~a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ID~T~L~~~~T~~~i~~l~ 152 (387)
+.+....+.+.++|+|.|-|.=|-..... . .|- +++. |+++.+.|.|.|+.-...+..-+
T Consensus 43 ~d~e~~v~~v~~~g~dav~~~~G~~~~~~-----~----~y~~dvpl----------ivkl~~~t~l~~~~~~~~~~~~v 103 (265)
T COG1830 43 EDPENIVAKVAEAGADAVAMTPGIARSVH-----R----GYAHDVPL----------IVKLNGSTSLSPDPNDQVLVATV 103 (265)
T ss_pred cCHHHHHHHHHhcCCCEEEecHhHHhhcC-----c----cccCCcCE----------EEEeccccccCCCcccceeeeeH
Confidence 44556677889999999998877432211 1 122 2222 47778889999988666666777
Q ss_pred HHhcCCCcHHHHHHHhhhccCCCeEEEEECCc--------cHHHHHHHhhhcCCCCCceEEEEecCCCCCCCCH------
Q psy10250 153 LKAIQPLSEELKEKVLHQQANVHTAAVCVYPA--------RVVDVIKVLDRENARDDVKVASVAAGFPSGQYLL------ 218 (387)
Q Consensus 153 ~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~--------~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~~------ 218 (387)
++|+ ..|--|||+.-+ .+....+...... ..+..+-.. -||-|....
T Consensus 104 e~ai----------------~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~-~~Gmp~v~~--~YpRg~~~~~~~~~d 164 (265)
T COG1830 104 EDAI----------------RLGADAVGATVYVGSETEREMIENISQVVEDAH-ELGMPLVAW--AYPRGPAIKDEYHRD 164 (265)
T ss_pred HHHH----------------hCCCcEEEEEEecCCcchHHHHHHHHHHHHHHH-HcCCceEEE--EeccCCccccccccc
Confidence 8887 677777776432 2333333332210 235555444 699887663
Q ss_pred -HHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCC-ChHHHHHHHHHHHHcC
Q psy10250 219 -ETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELK-TSENIYCASMTAMFAG 296 (387)
Q Consensus 219 -e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~-t~e~i~~a~~ia~~aG 296 (387)
+.-.+-++.+.++|||=|=. |+. |+. +..+.+++.|+ +.|++-=+-=. ++++..+.+.-++++|
T Consensus 165 ~~~v~~aaRlaaelGADIiK~--~yt----g~~----e~F~~vv~~~~----vpVviaGG~k~~~~~~~l~~~~~ai~aG 230 (265)
T COG1830 165 ADLVGYAARLAAELGADIIKT--KYT----GDP----ESFRRVVAACG----VPVVIAGGPKTETEREFLEMVTAAIEAG 230 (265)
T ss_pred HHHHHHHHHHHHHhcCCeEee--cCC----CCh----HHHHHHHHhCC----CCEEEeCCCCCCChHHHHHHHHHHHHcc
Confidence 35567788999999987543 221 222 66777888775 57788766554 6788889999999999
Q ss_pred CCEEEcCCCCCCC-CCChhhhHhHHHHHHHH
Q psy10250 297 SDFIKTSTGKEKT-NATIPAGIIMCSAIKHF 326 (387)
Q Consensus 297 aDfVKTSTGf~~~-gat~~~~~~m~~~v~~~ 326 (387)
+--+ .+|-.-. ...|+ .|+.+|..+
T Consensus 231 a~G~--~~GRNifQ~~~p~---~m~~Ai~~I 256 (265)
T COG1830 231 AMGV--AVGRNIFQHEDPE---AMVKAIQAI 256 (265)
T ss_pred Ccch--hhhhhhhccCChH---HHHHHHHHH
Confidence 9877 4553221 12232 277777654
No 140
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=94.75 E-value=0.25 Score=52.20 Aligned_cols=158 Identities=22% Similarity=0.204 Sum_probs=96.0
Q ss_pred CceEEEEecCCC-CCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCC-CcceEEEEeecc
Q psy10250 201 DVKVASVAAGFP-SGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGE-KIHMKTILAVGE 278 (387)
Q Consensus 201 ~v~v~tVvigFP-~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~-~~~lKvIlEt~~ 278 (387)
.+|++-- .-| .|-+-.--|+.+-...+..-.--+|..=+-..--==..+.+.+-|..++++-+. ++.||+.-|.+.
T Consensus 239 eIKiaQG--AKPGeGG~Lpg~KV~~~IA~~R~~~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I~VKlva~~~v 316 (485)
T COG0069 239 EIKIAQG--AKPGEGGQLPGEKVTPEIAKTRGSPPGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKISVKLVAEHGV 316 (485)
T ss_pred EEEeccC--CCCCCCCCCCCccCCHHHHHhcCCCCCCCCcCCCCcccccCHHHHHHHHHHHHhcCCCCeEEEEEecccch
Confidence 4666554 577 777777777777666666644444444221110001235555666667666543 367888777663
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEcCCCC-CCCCCChhhhHh---------HHHHHHHHHH-HcCCCceEeEeccCCCHHH
Q psy10250 279 LKTSENIYCASMTAMFAGSDFIKTSTGK-EKTNATIPAGII---------MCSAIKHFHK-LSGKKIGLKPAGGISTFED 347 (387)
Q Consensus 279 L~t~e~i~~a~~ia~~aGaDfVKTSTGf-~~~gat~~~~~~---------m~~~v~~~~~-~~~~~~gIKasGGIrt~~~ 347 (387)
= .|. + -+.++|||||- =.|+ +..||+|....- +.+.-+-+.+ ...+++.|=++||+||..|
T Consensus 317 ~----~ia-a--gvakA~AD~I~-IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~D 388 (485)
T COG0069 317 G----TIA-A--GVAKAGADVIT-IDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLRDKVKLIADGGLRTGAD 388 (485)
T ss_pred H----HHH-h--hhhhccCCEEE-EcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCcceeEEEecCCccCHHH
Confidence 2 232 2 28899999994 5565 456777643221 2222233322 2457899999999999999
Q ss_pred HHHHHHHHHHhcCCCccCCCcceeeccchHH
Q psy10250 348 SVRWIYLVLIMLGPDWLNKDLFRIGASSLLN 378 (387)
Q Consensus 348 a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~~~ 378 (387)
...-+ .||||| +-|||..++.
T Consensus 389 Vaka~-----aLGAd~-----v~~gTa~lia 409 (485)
T COG0069 389 VAKAA-----ALGADA-----VGFGTAALVA 409 (485)
T ss_pred HHHHH-----HhCcch-----hhhchHHHHH
Confidence 88888 599986 6777765543
No 141
>PLN02321 2-isopropylmalate synthase
Probab=94.69 E-value=4.1 Score=44.78 Aligned_cols=228 Identities=13% Similarity=0.058 Sum_probs=130.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHccc----CccEEEEEeccCCCCHHHHHHHHH
Q psy10250 6 QYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEE----KIHMKTILAVGELKTSENIYYASM 81 (387)
Q Consensus 6 ~~~~~~K~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~----~~~~KvIlEt~~L~~~e~i~~a~~ 81 (387)
..+++-|+.=++...+.|.++|++-.+. .-.+|++. ++.+.+...+ ...+-+|.-.+.- +.+.|.++.+
T Consensus 104 ~~s~eeKl~Ia~~L~~lGVd~IEvGfP~--~Sp~D~e~----vr~i~~~~~~~v~~~~~v~~i~a~~ra-~~~dId~A~~ 176 (632)
T PLN02321 104 TLTSKEKLDIARQLAKLGVDIIEAGFPI--ASPDDLEA----VKTIAKEVGNEVDEDGYVPVICGLSRC-NKKDIDAAWE 176 (632)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCcC--CCccHHHH----HHHHHHhcccCCCccccceeeeeehhc-cHHhHHHHHH
Confidence 4689999999999999999999986543 22344444 3344332211 1122344444443 4566655444
Q ss_pred HHHHcCCCEEecCCCCCCCCCCCcccccchhccccchhhhhhHHHHHHhhcccccccCCCCCCHHHHHHHHHHhcCCCcH
Q psy10250 82 TAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEFIDLTTLSGDDTEAVVETLTLKAIQPLSE 161 (387)
Q Consensus 82 ~a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ID~T~L~~~~T~~~i~~l~~~A~~~~~~ 161 (387)
....++...|.+. .+.+.+-.+. .| ..|.+++.+.+.+++
T Consensus 177 al~~a~~~~I~i~--------------------~stSd~h~~~-------------~l--~~t~ee~l~~~~~~V----- 216 (632)
T PLN02321 177 AVKHAKRPRIHTF--------------------IATSEIHMEH-------------KL--RKTPDEVVEIARDMV----- 216 (632)
T ss_pred HhcCCCCCEEEEE--------------------EcCCHHHHHH-------------Hh--CCCHHHHHHHHHHHH-----
Confidence 3222211122221 1112210000 02 247777777766666
Q ss_pred HHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEecCCCCCCCC-HHHHHHHHHHHHHCCCCeeeeec
Q psy10250 162 ELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPSGQYL-LETRLHEIELLAKQKVDEVDIVI 240 (387)
Q Consensus 162 ~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~-~e~K~~Ea~~Ai~~GAdEID~Vi 240 (387)
+++++. +.. .+. .+.|.+..+ .+.-+.-++.+.+.||+.|-+.=
T Consensus 217 -------------------------~~Ak~~--------G~~-~v~-fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~D 261 (632)
T PLN02321 217 -------------------------KYARSL--------GCE-DVE-FSPEDAGRSDPEFLYRILGEVIKAGATTLNIPD 261 (632)
T ss_pred -------------------------HHHHHc--------CCc-eEE-EecccCCCCCHHHHHHHHHHHHHcCCCEEEecc
Confidence 344432 111 122 377755544 45555556677888999986664
Q ss_pred CchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCC-CCC--CCCCChhhhH
Q psy10250 241 QRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTST-GKE--KTNATIPAGI 317 (387)
Q Consensus 241 n~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTST-Gf~--~~gat~~~~~ 317 (387)
-+|.. ....+.+-++.+++..++ .-+++|+...=++...=..-+..|+++||+.|-++- |.| .+++.+|.+.
T Consensus 262 TvG~~---~P~~v~~li~~l~~~~~~--~~~v~i~vH~HND~GlAvANslaAv~AGA~~Vd~TinGlGERaGNa~LEevv 336 (632)
T PLN02321 262 TVGYT---LPSEFGQLIADIKANTPG--IENVIISTHCQNDLGLSTANTLAGAHAGARQVEVTINGIGERAGNASLEEVV 336 (632)
T ss_pred cccCC---CHHHHHHHHHHHHHhcCC--CCCceEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecccccccccCccHHHHH
Confidence 45543 356777777777776553 226889998775555444457789999999999876 454 3578887665
Q ss_pred hHH
Q psy10250 318 IMC 320 (387)
Q Consensus 318 ~m~ 320 (387)
.++
T Consensus 337 ~~L 339 (632)
T PLN02321 337 MAI 339 (632)
T ss_pred HHH
Confidence 554
No 142
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=94.69 E-value=2.6 Score=39.51 Aligned_cols=145 Identities=18% Similarity=0.160 Sum_probs=80.6
Q ss_pred CCccHHHHHHHhhhcCCCCCceEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHH
Q psy10250 182 YPARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMK 261 (387)
Q Consensus 182 ~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~ 261 (387)
.+.....+++..+. .++++... |.-. + ...++.+++.|||-+ |++...+.+ .+.+ +.+.
T Consensus 58 ~~~~~~~i~~i~~~----~~~pv~~~--GgI~---~----~e~~~~~~~~Gad~v--vigs~~l~d--p~~~----~~i~ 116 (234)
T cd04732 58 EPVNLELIEEIVKA----VGIPVQVG--GGIR---S----LEDIERLLDLGVSRV--IIGTAAVKN--PELV----KELL 116 (234)
T ss_pred CCCCHHHHHHHHHh----cCCCEEEe--CCcC---C----HHHHHHHHHcCCCEE--EECchHHhC--hHHH----HHHH
Confidence 34556666665543 34565444 3221 1 566888888999974 677777653 3333 3334
Q ss_pred HHhCC-Cc--ceE-----EEEeeccCCChHHHHHHHHHHHHcCCCEE----EcCCCCCCCCCChhhhHhHHHHHHHHHHH
Q psy10250 262 EKCGE-KI--HMK-----TILAVGELKTSENIYCASMTAMFAGSDFI----KTSTGKEKTNATIPAGIIMCSAIKHFHKL 329 (387)
Q Consensus 262 ~~~~~-~~--~lK-----vIlEt~~L~t~e~i~~a~~ia~~aGaDfV----KTSTGf~~~gat~~~~~~m~~~v~~~~~~ 329 (387)
+.++. .. .+. ++..-..-.++.......+...+.|++++ -+.+|.. .|+..+ .++.+++.
T Consensus 117 ~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~-~g~~~~-------~i~~i~~~ 188 (234)
T cd04732 117 KEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTL-SGPNFE-------LYKELAAA 188 (234)
T ss_pred HHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCcc-CCCCHH-------HHHHHHHh
Confidence 34432 11 111 11111000012223345666788999977 2334432 344443 45555544
Q ss_pred cCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 330 SGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 330 ~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
+ ++.|=++|||++.+++..++. .|++
T Consensus 189 ~--~ipvi~~GGi~~~~di~~~~~-----~Ga~ 214 (234)
T cd04732 189 T--GIPVIASGGVSSLDDIKALKE-----LGVA 214 (234)
T ss_pred c--CCCEEEecCCCCHHHHHHHHH-----CCCC
Confidence 3 477889999999999999984 6874
No 143
>PRK02227 hypothetical protein; Provisional
Probab=94.68 E-value=0.36 Score=46.62 Aligned_cols=76 Identities=18% Similarity=0.208 Sum_probs=54.7
Q ss_pred HHHHHHHHHCCCCeeeee-cCchhhhcCChhHHHHHHHHHHHHhCCCcceEE-EEeeccCCChHHHHHHHHHHHHcCCCE
Q psy10250 222 LHEIELLAKQKVDEVDIV-IQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKT-ILAVGELKTSENIYCASMTAMFAGSDF 299 (387)
Q Consensus 222 ~~Ea~~Ai~~GAdEID~V-in~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKv-IlEt~~L~t~e~i~~a~~ia~~aGaDf 299 (387)
..|++.|++-|||=||+= ++.|+| -.++.++.+||.+.+. +..++-. |=+.++- +..+..+..-+..+|+||
T Consensus 10 ~eEA~~Al~~GaDiIDvK~P~~GaL-GA~~p~vir~Iv~~~~---~~~pvSAtiGD~p~~--p~~~~~aa~~~a~~GvDy 83 (238)
T PRK02227 10 LEEALEALAGGADIIDVKNPKEGSL-GANFPWVIREIVAAVP---GRKPVSATIGDVPYK--PGTISLAALGAAATGADY 83 (238)
T ss_pred HHHHHHHHhcCCCEEEccCCCCCCC-CCCCHHHHHHHHHHhC---CCCCceeeccCCCCC--chHHHHHHHHHHhhCCCE
Confidence 689999999999999987 555654 3677888777766653 3234443 3333333 467888888899999999
Q ss_pred EEcC
Q psy10250 300 IKTS 303 (387)
Q Consensus 300 VKTS 303 (387)
||-.
T Consensus 84 VKvG 87 (238)
T PRK02227 84 VKVG 87 (238)
T ss_pred EEEc
Confidence 9964
No 144
>KOG2335|consensus
Probab=94.66 E-value=0.86 Score=46.37 Aligned_cols=132 Identities=20% Similarity=0.147 Sum_probs=96.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCeeeeec----------CchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCCh
Q psy10250 213 SGQYLLETRLHEIELLAKQKVDEVDIVI----------QRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTS 282 (387)
Q Consensus 213 ~G~~~~e~K~~Ea~~Ai~~GAdEID~Vi----------n~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~ 282 (387)
+|.+..+.=+..|+.+-..+ |+||+=. .+|.++.-+|+.|.+-|++++.-++.++.+|+=|= .+.
T Consensus 80 f~~ndp~~ll~Aa~lv~~y~-D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~----~d~ 154 (358)
T KOG2335|consen 80 FGGNDPENLLKAARLVQPYC-DGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIF----VDL 154 (358)
T ss_pred EcCCCHHHHHHHHHHhhhhc-CcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEec----CcH
Confidence 46777777666666666665 9998632 35777888899999999999988876677787663 344
Q ss_pred HHHHHHHHHHHHcCCCEEEcCCCC-----C--CCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHH
Q psy10250 283 ENIYCASMTAMFAGSDFIKTSTGK-----E--KTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLV 355 (387)
Q Consensus 283 e~i~~a~~ia~~aGaDfVKTSTGf-----~--~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~ 355 (387)
+.=..-|+...+||++++ |=-|- | .+.+.. ++|+.+++..+. +.|=|=|+|.+++++...+.
T Consensus 155 ~kTvd~ak~~e~aG~~~l-tVHGRtr~~kg~~~~pad~-------~~i~~v~~~~~~-ipviaNGnI~~~~d~~~~~~-- 223 (358)
T KOG2335|consen 155 EKTVDYAKMLEDAGVSLL-TVHGRTREQKGLKTGPADW-------EAIKAVRENVPD-IPVIANGNILSLEDVERCLK-- 223 (358)
T ss_pred HHHHHHHHHHHhCCCcEE-EEecccHHhcCCCCCCcCH-------HHHHHHHHhCcC-CcEEeeCCcCcHHHHHHHHH--
Confidence 555567789999999998 43333 1 223444 577888888877 99999999999999999985
Q ss_pred HHhcCCC
Q psy10250 356 LIMLGPD 362 (387)
Q Consensus 356 ~~~~Ga~ 362 (387)
.-|++
T Consensus 224 --~tG~d 228 (358)
T KOG2335|consen 224 --YTGAD 228 (358)
T ss_pred --HhCCc
Confidence 46654
No 145
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=94.63 E-value=4.3 Score=43.06 Aligned_cols=198 Identities=15% Similarity=0.051 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHcCCCEEecCCCCCCCCCCCcccccchhccccchhhhhhHHHHHHhhcccccccCC----C-----C-
Q psy10250 73 SENIYYASMTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEFIDLTTLS----G-----D- 142 (387)
Q Consensus 73 ~e~i~~a~~~a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ID~T~L~----~-----~- 142 (387)
-+++..++...-++|.+-|-.. +|||.....++ .. |+--+.++.+.+.+-.|.|. . +
T Consensus 34 t~d~l~ia~~ld~~G~~siE~w-----GGAtfd~~~rf-------l~-edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~ 100 (468)
T PRK12581 34 IEDMLPVLTILDKIGYYSLECW-----GGATFDACIRF-------LN-EDPWERLRTLKKGLPNTRLQMLLRGQNLLGYR 100 (468)
T ss_pred HHHHHHHHHHHHhcCCCEEEec-----CCcchhhhhcc-------cC-CCHHHHHHHHHHhCCCCceeeeeccccccCcc
Confidence 4566677777788899999865 44543322332 22 22223344444444433322 1 1
Q ss_pred -CCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEecCCCCC-CCCHHH
Q psy10250 143 -DTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPSG-QYLLET 220 (387)
Q Consensus 143 -~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G-~~~~e~ 220 (387)
-..+-++.+++.|.. +...+--|+-..++++.....++... ..+..+... ++|=.. .++.+.
T Consensus 101 ~ypddvv~~fv~~a~~--------------~Gidi~Rifd~lnd~~n~~~ai~~ak-~~G~~~~~~-i~yt~sp~~t~~y 164 (468)
T PRK12581 101 HYADDIVDKFISLSAQ--------------NGIDVFRIFDALNDPRNIQQALRAVK-KTGKEAQLC-IAYTTSPVHTLNY 164 (468)
T ss_pred CCcchHHHHHHHHHHH--------------CCCCEEEEcccCCCHHHHHHHHHHHH-HcCCEEEEE-EEEEeCCcCcHHH
Confidence 123667888888871 13555666667777777666553210 123333333 355211 456777
Q ss_pred HHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEE
Q psy10250 221 RLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 300 (387)
Q Consensus 221 K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfV 300 (387)
=+..++++.+.||+.|-+.=-.|.+. ...+++-++++++. ..+-|+...=+|...-...+..|+++|+|.|
T Consensus 165 ~~~~a~~l~~~Gad~I~IkDtaG~l~---P~~v~~Lv~alk~~------~~~pi~~H~Hnt~GlA~An~laAieAGad~v 235 (468)
T PRK12581 165 YLSLVKELVEMGADSICIKDMAGILT---PKAAKELVSGIKAM------TNLPLIVHTHATSGISQMTYLAAVEAGADRI 235 (468)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcC---HHHHHHHHHHHHhc------cCCeEEEEeCCCCccHHHHHHHHHHcCCCEE
Confidence 78889999999999987764455433 66777777777652 1344555555444444445677999999999
Q ss_pred EcCCC-CCC
Q psy10250 301 KTSTG-KEK 308 (387)
Q Consensus 301 KTSTG-f~~ 308 (387)
-||.+ |+.
T Consensus 236 D~ai~g~g~ 244 (468)
T PRK12581 236 DTALSPFSE 244 (468)
T ss_pred EeeccccCC
Confidence 99874 543
No 146
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=94.58 E-value=0.8 Score=46.44 Aligned_cols=118 Identities=21% Similarity=0.256 Sum_probs=79.6
Q ss_pred HHHHHHHHCC--CCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEE
Q psy10250 223 HEIELLAKQK--VDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 300 (387)
Q Consensus 223 ~Ea~~Ai~~G--AdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfV 300 (387)
.-++..++.| +|- +|+|.. .|+.+.+.+.|+.+++..++ +.|+-=..+ |.| .++.++++|||-|
T Consensus 110 er~~~L~~a~~~~d~--iviD~A---hGhs~~~i~~ik~ir~~~p~----~~viaGNV~-T~e----~a~~Li~aGAD~i 175 (343)
T TIGR01305 110 EKMTSILEAVPQLKF--ICLDVA---NGYSEHFVEFVKLVREAFPE----HTIMAGNVV-TGE----MVEELILSGADIV 175 (343)
T ss_pred HHHHHHHhcCCCCCE--EEEECC---CCcHHHHHHHHHHHHhhCCC----CeEEEeccc-CHH----HHHHHHHcCCCEE
Confidence 3344455543 554 457775 59999999999999987764 344433345 555 4567889999999
Q ss_pred EcCCCCCC-------CCCChhhhHhHHHHHHHHHHHcCC-CceEeEeccCCCHHHHHHHHHHHHHhcCCCc
Q psy10250 301 KTSTGKEK-------TNATIPAGIIMCSAIKHFHKLSGK-KIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 363 (387)
Q Consensus 301 KTSTGf~~-------~gat~~~~~~m~~~v~~~~~~~~~-~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w 363 (387)
|-|-|=|. .|+..+ .+.+|....+..++ ++.|=+=||||+.-|..+-+ .+||++
T Consensus 176 kVgiGpGSicttR~~~Gvg~p----qltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KAL-----A~GAd~ 237 (343)
T TIGR01305 176 KVGIGPGSVCTTRTKTGVGYP----QLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAF-----GAGADF 237 (343)
T ss_pred EEcccCCCcccCceeCCCCcC----HHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHH-----HcCCCE
Confidence 97744322 233322 23456666666655 78899999999999988888 489864
No 147
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=94.55 E-value=1.5 Score=45.05 Aligned_cols=126 Identities=16% Similarity=0.158 Sum_probs=79.4
Q ss_pred HHHHHHHCCCCeeeeec-Cchhh----hcC---------------ChhHHHHHHHHHHHHhCCC--cceEEEEee-----
Q psy10250 224 EIELLAKQKVDEVDIVI-QRSLV----LNN---------------QWPELFSEVKQMKEKCGEK--IHMKTILAV----- 276 (387)
Q Consensus 224 Ea~~Ai~~GAdEID~Vi-n~~~l----k~g---------------~~~~v~~Ei~~v~~~~~~~--~~lKvIlEt----- 276 (387)
-|+.|.+.|.|-|++=. +-|+| +|. +...+.+=+++|++++++. +-+|+=...
T Consensus 155 AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~ 234 (382)
T cd02931 155 SAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDL 234 (382)
T ss_pred HHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcccc
Confidence 46778889999999864 32443 221 2245556778888888753 445543210
Q ss_pred ------------ccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCC-----C-ChhhhHhHHHHHHHHHHHcCCCceEeE
Q psy10250 277 ------------GELKTSENIYCASMTAMFAGSDFIKTSTGKEKTN-----A-TIPAGIIMCSAIKHFHKLSGKKIGLKP 338 (387)
Q Consensus 277 ------------~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~g-----a-t~~~~~~m~~~v~~~~~~~~~~~gIKa 338 (387)
+-+ +.++....++...++|+|||-.|.|..... . ..+.. ....-++.+++.+ ++.|=+
T Consensus 235 ~~~~~~~~~~~~~g~-~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~-~~~~~~~~ik~~~--~~pvi~ 310 (382)
T cd02931 235 RQGALPGEEFQEKGR-DLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKG-MYLPYCKALKEVV--DVPVIM 310 (382)
T ss_pred ccccccccccccCCC-CHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcc-hhHHHHHHHHHHC--CCCEEE
Confidence 113 456667788888899999999998852110 0 00000 0123455666665 356778
Q ss_pred eccCCCHHHHHHHHH
Q psy10250 339 AGGISTFEDSVRWIY 353 (387)
Q Consensus 339 sGGIrt~~~a~~~i~ 353 (387)
+|||++.+++.+++.
T Consensus 311 ~G~i~~~~~~~~~l~ 325 (382)
T cd02931 311 AGRMEDPELASEAIN 325 (382)
T ss_pred eCCCCCHHHHHHHHH
Confidence 999999999999994
No 148
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=94.54 E-value=0.3 Score=47.02 Aligned_cols=175 Identities=19% Similarity=0.207 Sum_probs=103.4
Q ss_pred cccccccCCCCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCcc------HHHHHHHhhhcCCCCCceEE
Q psy10250 132 EFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPAR------VVDVIKVLDRENARDDVKVA 205 (387)
Q Consensus 132 ~~ID~T~L~~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~------v~~a~~~L~~~~~~~~v~v~ 205 (387)
...+.|+|.|+.+ ++..+..+.+. +.|..+|.|--+- +....+.++. .+++++
T Consensus 15 ~~~H~tliDP~k~-~~~~ei~~~~~----------------~~GTDaImIGGS~gvt~~~~~~~v~~ik~---~~~lPv- 73 (240)
T COG1646 15 GKRHLTLIDPDKT-EEADEIAEAAA----------------EAGTDAIMIGGSDGVTEENVDNVVEAIKE---RTDLPV- 73 (240)
T ss_pred cceEEEEeCcccc-cccHHHHHHHH----------------HcCCCEEEECCcccccHHHHHHHHHHHHh---hcCCCE-
Confidence 5688999999998 55666666666 5688899987653 3444455553 256665
Q ss_pred EEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHH-HHHHHHHHhC---CCcce-EEEEe-----
Q psy10250 206 SVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFS-EVKQMKEKCG---EKIHM-KTILA----- 275 (387)
Q Consensus 206 tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~-Ei~~v~~~~~---~~~~l-KvIlE----- 275 (387)
+=||.+.+...- ..|.+.=.+.|.|+|-.++-- .+......-+ ...+. -+|++
T Consensus 74 ---ilfP~~~~~is~--------------~aDavff~svLNS~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~p~~~v 136 (240)
T COG1646 74 ---ILFPGSPSGISP--------------YADAVFFPSVLNSDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVNPDGTV 136 (240)
T ss_pred ---EEecCChhccCc--------------cCCeEEEEEEecCCCcccccchhhhhhHHHHhhhheecceEEEEECCCCce
Confidence 468877654321 345555566677777766543 1111111100 00011 11111
Q ss_pred -----e--ccCCChHHHHHHHHHHH-HcCC--CEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCH
Q psy10250 276 -----V--GELKTSENIYCASMTAM-FAGS--DFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTF 345 (387)
Q Consensus 276 -----t--~~L~t~e~i~~a~~ia~-~aGa--DfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~ 345 (387)
. +-+ +.+++..+..++. .-|- =|+--|.|++ .+..++ .|+..++ ...+=.=|||||.
T Consensus 137 a~v~~A~~ip~-~~~~iaa~y~la~~~~g~~~~YlEagsga~-~Pv~~e-------~v~~v~~----~~~LivGGGIrs~ 203 (240)
T COG1646 137 AWVGKAKPIPL-DKEDIAAYYALAEKYLGMPVVYLEAGSGAG-DPVPVE-------MVSRVLS----DTPLIVGGGIRSP 203 (240)
T ss_pred eeecccccCCC-CcHHHHHHHHHHHHHhCCeEEEEEecCCCC-CCcCHH-------HHHHhhc----cceEEEcCCcCCH
Confidence 1 234 4566766665555 3354 5888899984 345554 4544432 2356667999999
Q ss_pred HHHHHHHHHHHHhcCCC
Q psy10250 346 EDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 346 ~~a~~~i~l~~~~~Ga~ 362 (387)
+||.+|. .+|||
T Consensus 204 E~A~~~a-----~agAD 215 (240)
T COG1646 204 EQAREMA-----EAGAD 215 (240)
T ss_pred HHHHHHH-----HcCCC
Confidence 9999999 58985
No 149
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=94.53 E-value=1.6 Score=41.41 Aligned_cols=145 Identities=15% Similarity=0.084 Sum_probs=79.1
Q ss_pred CCccHHHHHHHhhhcCCCCCceEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHH
Q psy10250 182 YPARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMK 261 (387)
Q Consensus 182 ~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~ 261 (387)
.|..++.+++.-+. .+++|... .|- .+ ...++.+++.|++-+ +++.+.+.+ .+.+. ++.
T Consensus 56 ~~~~~~~i~~i~~~----~~~pv~~~-GGI----~s----~~d~~~~l~~G~~~v--~ig~~~~~~--p~~~~----~i~ 114 (243)
T cd04731 56 RETMLDVVERVAEE----VFIPLTVG-GGI----RS----LEDARRLLRAGADKV--SINSAAVEN--PELIR----EIA 114 (243)
T ss_pred CcccHHHHHHHHHh----CCCCEEEe-CCC----CC----HHHHHHHHHcCCceE--EECchhhhC--hHHHH----HHH
Confidence 34456666665443 45677666 232 22 245667777898875 567766653 33333 333
Q ss_pred HHhCCC-cc------------eEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHH
Q psy10250 262 EKCGEK-IH------------MKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHK 328 (387)
Q Consensus 262 ~~~~~~-~~------------lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~ 328 (387)
+.++.. .+ .+|-.....-.++......++.+.+.|+|+|=- ||....|..... -.+-++.+++
T Consensus 115 ~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v-~~i~~~g~~~g~---~~~~i~~i~~ 190 (243)
T cd04731 115 KRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILL-TSMDRDGTKKGY---DLELIRAVSS 190 (243)
T ss_pred HHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEE-eccCCCCCCCCC---CHHHHHHHHh
Confidence 334321 11 223332222223333445567788999998854 333322211100 1133455554
Q ss_pred HcCCCceEeEeccCCCHHHHHHHHH
Q psy10250 329 LSGKKIGLKPAGGISTFEDSVRWIY 353 (387)
Q Consensus 329 ~~~~~~gIKasGGIrt~~~a~~~i~ 353 (387)
.. .+.|=++|||++.+++.+++.
T Consensus 191 ~~--~~pvia~GGi~~~~di~~~l~ 213 (243)
T cd04731 191 AV--NIPVIASGGAGKPEHFVEAFE 213 (243)
T ss_pred hC--CCCEEEeCCCCCHHHHHHHHH
Confidence 43 577889999999999999995
No 150
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=94.52 E-value=0.46 Score=48.26 Aligned_cols=93 Identities=20% Similarity=0.193 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCC--CChhhhHhHHHHHHHHHHHc
Q psy10250 253 LFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTN--ATIPAGIIMCSAIKHFHKLS 330 (387)
Q Consensus 253 v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~g--at~~~~~~m~~~v~~~~~~~ 330 (387)
..++|+.+++..+.+..+|- + . +.+. ++.+.++|+|+|--|- -+... .++.-+.. +..++.+.+.+
T Consensus 201 ~~~~i~~l~~~~~~PvivKg---v--~-~~~d----A~~a~~~G~d~I~vsn-hgG~~~d~~~~~~~~-L~~i~~~~~~~ 268 (344)
T cd02922 201 TWDDIKWLRKHTKLPIVLKG---V--Q-TVED----AVLAAEYGVDGIVLSN-HGGRQLDTAPAPIEV-LLEIRKHCPEV 268 (344)
T ss_pred CHHHHHHHHHhcCCcEEEEc---C--C-CHHH----HHHHHHcCCCEEEEEC-CCcccCCCCCCHHHH-HHHHHHHHHHh
Confidence 34667888877765577883 2 2 3333 3567899999987653 11110 11111111 22344433345
Q ss_pred CCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 331 GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 331 ~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
++++.|=++||||+..|+.+.+ .+||+
T Consensus 269 ~~~~~vi~~GGIr~G~Dv~kal-----aLGA~ 295 (344)
T cd02922 269 FDKIEVYVDGGVRRGTDVLKAL-----CLGAK 295 (344)
T ss_pred CCCceEEEeCCCCCHHHHHHHH-----HcCCC
Confidence 6789999999999999999999 59985
No 151
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=94.51 E-value=0.32 Score=44.50 Aligned_cols=92 Identities=24% Similarity=0.296 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCC
Q psy10250 253 LFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGK 332 (387)
Q Consensus 253 v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~ 332 (387)
+.+=++++++..+. ..|+.+|+.-+ +|.. -|+++|+|.|-==+ .+++.++. .++.+ +..++
T Consensus 66 i~~av~~~~~~~~~--~~~I~VEv~~~---ee~~----ea~~~g~d~I~lD~------~~~~~~~~---~v~~l-~~~~~ 126 (169)
T PF01729_consen 66 IEEAVKAARQAAPE--KKKIEVEVENL---EEAE----EALEAGADIIMLDN------MSPEDLKE---AVEEL-RELNP 126 (169)
T ss_dssp HHHHHHHHHHHSTT--TSEEEEEESSH---HHHH----HHHHTT-SEEEEES-------CHHHHHH---HHHHH-HHHTT
T ss_pred HHHHHHHHHHhCCC--CceEEEEcCCH---HHHH----HHHHhCCCEEEecC------cCHHHHHH---HHHHH-hhcCC
Confidence 44445555655554 45699999855 5553 46779999997433 35665443 33333 34577
Q ss_pred CceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccch
Q psy10250 333 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL 376 (387)
Q Consensus 333 ~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~ 376 (387)
++.|=+|||| |.+...+|. ..|. +.|+++++
T Consensus 127 ~v~ie~SGGI-~~~ni~~ya-----~~gv-------D~isvg~~ 157 (169)
T PF01729_consen 127 RVKIEASGGI-TLENIAEYA-----KTGV-------DVISVGSL 157 (169)
T ss_dssp TSEEEEESSS-STTTHHHHH-----HTT--------SEEEECHH
T ss_pred cEEEEEECCC-CHHHHHHHH-----hcCC-------CEEEcChh
Confidence 7999999999 456677777 5887 58888765
No 152
>PRK06852 aldolase; Validated
Probab=94.46 E-value=0.11 Score=52.01 Aligned_cols=78 Identities=22% Similarity=0.244 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHcC------CCeeeeecchhHHhcCChhHHHHHHHHHHHHccc-CccEEEEEeccCCC--------CHHH
Q psy10250 11 TRLHEIELLAKQK------VDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEE-KIHMKTILAVGELK--------TSEN 75 (387)
Q Consensus 11 ~K~~E~~~a~~~G------A~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~-~~~~KvIlEt~~L~--------~~e~ 75 (387)
.=...+++|++.| ||-+=+-+|+| +..-..-.+++.++++.|+. +++ +|+.. |-. +.+.
T Consensus 116 ~l~~sVeeAvrlG~~~~~~AdAV~v~v~~G---s~~E~~ml~~l~~v~~ea~~~GlP--ll~~~-yprG~~i~~~~~~~~ 189 (304)
T PRK06852 116 RQLLDVEQVVEFKENSGLNILGVGYTIYLG---SEYESEMLSEAAQIIYEAHKHGLI--AVLWI-YPRGKAVKDEKDPHL 189 (304)
T ss_pred cceecHHHHHhcCCccCCCceEEEEEEecC---CHHHHHHHHHHHHHHHHHHHhCCc--EEEEe-eccCcccCCCccHHH
Confidence 4455688999998 88999999999 44446677789999998874 344 44322 211 2367
Q ss_pred HHHHHHHHHHcCCCEEecC
Q psy10250 76 IYYASMTAMFAGSDFIKTS 94 (387)
Q Consensus 76 i~~a~~~a~~ag~dfvKTS 94 (387)
|..|+++|.+.|||+|||.
T Consensus 190 ia~aaRiaaELGADIVKv~ 208 (304)
T PRK06852 190 IAGAAGVAACLGADFVKVN 208 (304)
T ss_pred HHHHHHHHHHHcCCEEEec
Confidence 8999999999999999985
No 153
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=94.43 E-value=0.43 Score=46.71 Aligned_cols=89 Identities=25% Similarity=0.261 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCC
Q psy10250 253 LFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGK 332 (387)
Q Consensus 253 v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~ 332 (387)
+..-++.+++.+++ ..|+.+|+.-+ ||..+ |.++|+|||--.. .+++ .++...+..+.
T Consensus 164 ~~~av~~~r~~~~~--~~~Igvev~t~---eea~~----A~~~gaDyI~ld~------~~~e-------~lk~~v~~~~~ 221 (265)
T TIGR00078 164 IEKAVKRARAAAPF--ALKIEVEVESL---EEAEE----AAEAGADIIMLDN------MKPE-------EIKEAVQLLKG 221 (265)
T ss_pred HHHHHHHHHHhCCC--CCeEEEEeCCH---HHHHH----HHHcCCCEEEECC------CCHH-------HHHHHHHHhcC
Confidence 55567777776764 36788998755 55543 4689999996433 3343 34444444455
Q ss_pred CceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccch
Q psy10250 333 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL 376 (387)
Q Consensus 333 ~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~ 376 (387)
++.|=||||| |.+.+..+. ..|+ +.|.+|+.
T Consensus 222 ~ipi~AsGGI-~~~ni~~~a-----~~Gv-------d~Isvgai 252 (265)
T TIGR00078 222 RVLLEASGGI-TLDNLEEYA-----ETGV-------DVISSGAL 252 (265)
T ss_pred CCcEEEECCC-CHHHHHHHH-----HcCC-------CEEEeCHH
Confidence 6889999999 699999999 5898 58888654
No 154
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=94.43 E-value=0.79 Score=45.37 Aligned_cols=114 Identities=24% Similarity=0.254 Sum_probs=64.3
Q ss_pred HHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEE
Q psy10250 222 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 301 (387)
Q Consensus 222 ~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVK 301 (387)
..|++...+.|+|-||-- .. .....+.+..++... ++.+ .|--.|.+|- .-+++.|+|||-
T Consensus 79 ~~Ea~~L~~~GvDiIDeT----e~----lrPade~~~~~K~~f------~vpf-mad~~~l~EA----lrai~~GadmI~ 139 (287)
T TIGR00343 79 FVEAQILEALGVDYIDES----EV----LTPADWTFHIDKKKF------KVPF-VCGARDLGEA----LRRINEGAAMIR 139 (287)
T ss_pred HHHHHHHHHcCCCEEEcc----CC----CCcHHHHHHHHHHHc------CCCE-EccCCCHHHH----HHHHHCCCCEEe
Confidence 899999999999999822 11 111333344444322 2222 2223343433 336789999997
Q ss_pred cCCCCCCCCCChhhhHh---HH--------------------------HHHHHHHHHcCCCceEe--EeccCCCHHHHHH
Q psy10250 302 TSTGKEKTNATIPAGII---MC--------------------------SAIKHFHKLSGKKIGLK--PAGGISTFEDSVR 350 (387)
Q Consensus 302 TSTGf~~~gat~~~~~~---m~--------------------------~~v~~~~~~~~~~~gIK--asGGIrt~~~a~~ 350 (387)
| ||.+..|--.+.++- +. +-++.+++. .++.|= +.|||.|++++..
T Consensus 140 T-t~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~--~~iPVV~fAiGGI~TPedAa~ 216 (287)
T TIGR00343 140 T-KGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKL--GKLPVVNFAAGGVATPADAAL 216 (287)
T ss_pred c-cccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHh--CCCCEEEeccCCCCCHHHHHH
Confidence 4 555444431111110 11 122233222 246665 7899999999999
Q ss_pred HHHHHHHhcCCC
Q psy10250 351 WIYLVLIMLGPD 362 (387)
Q Consensus 351 ~i~l~~~~~Ga~ 362 (387)
++ ++|++
T Consensus 217 ~m-----elGAd 223 (287)
T TIGR00343 217 MM-----QLGAD 223 (287)
T ss_pred HH-----HcCCC
Confidence 99 58984
No 155
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.41 E-value=1.1 Score=46.10 Aligned_cols=126 Identities=17% Similarity=0.191 Sum_probs=68.7
Q ss_pred HHHHHHHHCCCCeeeeec---Cchhhhc-CChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCC
Q psy10250 223 HEIELLAKQKVDEVDIVI---QRSLVLN-NQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSD 298 (387)
Q Consensus 223 ~Ea~~Ai~~GAdEID~Vi---n~~~lk~-g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaD 298 (387)
.-++.+++.|+|-|=+=- +..+.-+ ++|..+ ..+++.. .++||. +-..|.+ .++-++++|||
T Consensus 145 e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i----~~~ik~~----~ipVIa--G~V~t~e----~A~~l~~aGAD 210 (368)
T PRK08649 145 ELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNL----KEFIYEL----DVPVIV--GGCVTYT----TALHLMRTGAA 210 (368)
T ss_pred HHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHH----HHHHHHC----CCCEEE--eCCCCHH----HHHHHHHcCCC
Confidence 445666778887754421 2222222 356554 3333322 255666 3454644 33555679999
Q ss_pred EEEcCCCCCCC-------CCChhhhHhHHHHHHH---H-HHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCC
Q psy10250 299 FIKTSTGKEKT-------NATIPAGIIMCSAIKH---F-HKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKD 367 (387)
Q Consensus 299 fVKTSTGf~~~-------gat~~~~~~m~~~v~~---~-~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~ 367 (387)
.|+-+-|-+.. |..++.+..+.+..+. + ++..+..+.|=++|||++..++.+-+ .+||+.+--|
T Consensus 211 ~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAl-----alGAd~Vm~G 285 (368)
T PRK08649 211 GVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAI-----ACGADAVMLG 285 (368)
T ss_pred EEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHH-----HcCCCeeccc
Confidence 99986443211 1123333222222211 1 11223358888999999999999999 4899754333
No 156
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=94.35 E-value=0.41 Score=47.70 Aligned_cols=103 Identities=17% Similarity=0.095 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHc--CCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHc
Q psy10250 253 LFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFA--GSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLS 330 (387)
Q Consensus 253 v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~a--GaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~ 330 (387)
+.+-+++.++.++. ..|+++|+..+.+ ++..|.+.+... |+|-|-==+--...|.+++.++.+.++++ ..
T Consensus 170 ~~~A~~~~~~~~p~--~~~i~vevdt~~~--~v~eal~~~~~~~~~~d~I~lDn~~~~~G~~~~~~~~~~~~l~----~~ 241 (302)
T cd01571 170 QVEAWKAFDETYPE--DVPRIALIDTFND--EKEEALKAAKALGDKLDGVRLDTPSSRRGVFRYLIREVRWALD----IR 241 (302)
T ss_pred HHHHHHHHHHHCCC--cCCeEEEEeecCc--chHHHHHHHHHhCCCCcEEEECCCCCCCCCHHHHHHHHHHHHH----hC
Confidence 45556666665553 3689999999842 354454444332 47877643311134667776555544443 33
Q ss_pred C-CCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccch
Q psy10250 331 G-KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL 376 (387)
Q Consensus 331 ~-~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~ 376 (387)
+ +++.|=+|||| |.+.+.+|. ..|. +.||.++.
T Consensus 242 g~~~~~ieaSGgI-~~~~i~~~a-----~~gv-------D~isvGs~ 275 (302)
T cd01571 242 GYKHVKIFVSGGL-DEEDIKELE-----DVGV-------DAFGVGTA 275 (302)
T ss_pred CCCCeEEEEeCCC-CHHHHHHHH-----HcCC-------CEEECCcc
Confidence 4 67899999999 999999998 5888 57877654
No 157
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=94.32 E-value=5.6 Score=38.79 Aligned_cols=202 Identities=11% Similarity=0.035 Sum_probs=111.5
Q ss_pred CCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEE-----CCccHHHHHHHhhhcCCCCCceEEEEecCCCCCC
Q psy10250 141 GDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCV-----YPARVVDVIKVLDRENARDDVKVASVAAGFPSGQ 215 (387)
Q Consensus 141 ~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV-----~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~ 215 (387)
-..|.++..++++.-. +.||..+=+ +|..++..+++.+-. ..+.++.+....-+.|.
T Consensus 15 ~~~s~e~k~~i~~~L~----------------~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i 76 (273)
T cd07941 15 ISFSVEDKLRIARKLD----------------ELGVDYIEGGWPGSNPKDTEFFARAKKLK--LKHAKLAAFGSTRRAGV 76 (273)
T ss_pred CCCCHHHHHHHHHHHH----------------HcCCCEEEecCCcCCHHHHHHHHHHHHcC--CCCcEEEEEecccccCC
Confidence 3456666666666554 345554433 455555554332210 01345544421223333
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeeecCchhh-----hcCChhHHHHHHHHHHHHhCC-CcceEEEEe---eccCCChHHHH
Q psy10250 216 YLLETRLHEIELLAKQKVDEVDIVIQRSLV-----LNNQWPELFSEVKQMKEKCGE-KIHMKTILA---VGELKTSENIY 286 (387)
Q Consensus 216 ~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~l-----k~g~~~~v~~Ei~~v~~~~~~-~~~lKvIlE---t~~L~t~e~i~ 286 (387)
... ....++.+++.|++.|.+++..+-. .....+...+.+...++.++. +..+-+-.| .+.-.+++...
T Consensus 77 ~~~--~~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~ 154 (273)
T cd07941 77 KAE--EDPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYAL 154 (273)
T ss_pred Ccc--chHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHH
Confidence 221 1245677889999999999876532 223446666777777766653 233444334 22233567777
Q ss_pred HHHHHHHHcCCCEE--EcCCCCCCCCCChhhhHhHHHHHHHHHHHcC-CCceEeEec--cCCCHHHHHHHHHHHHHhcCC
Q psy10250 287 CASMTAMFAGSDFI--KTSTGKEKTNATIPAGIIMCSAIKHFHKLSG-KKIGLKPAG--GISTFEDSVRWIYLVLIMLGP 361 (387)
Q Consensus 287 ~a~~ia~~aGaDfV--KTSTGf~~~gat~~~~~~m~~~v~~~~~~~~-~~~gIKasG--GIrt~~~a~~~i~l~~~~~Ga 361 (387)
+.++.+.++|+|-| +-++| .++|+.+..+++.+ ++..+ -.+++..== |-- ...++.-+ ++|+
T Consensus 155 ~~~~~~~~~g~~~i~l~DT~G----~~~P~~v~~lv~~l---~~~~~~~~l~~H~Hnd~Gla-~An~laA~-----~aGa 221 (273)
T cd07941 155 ATLKAAAEAGADWLVLCDTNG----GTLPHEIAEIVKEV---RERLPGVPLGIHAHNDSGLA-VANSLAAV-----EAGA 221 (273)
T ss_pred HHHHHHHhCCCCEEEEecCCC----CCCHHHHHHHHHHH---HHhCCCCeeEEEecCCCCcH-HHHHHHHH-----HcCC
Confidence 88888999999965 55666 47888776655444 44554 234333210 111 12233333 5899
Q ss_pred CccCCCcceeeccc
Q psy10250 362 DWLNKDLFRIGASS 375 (387)
Q Consensus 362 ~w~~~~~~RIGtSs 375 (387)
+|++....=+|-.+
T Consensus 222 ~~id~s~~GlGera 235 (273)
T cd07941 222 TQVQGTINGYGERC 235 (273)
T ss_pred CEEEEecccccccc
Confidence 99887777777654
No 158
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=94.30 E-value=2.1 Score=40.92 Aligned_cols=151 Identities=18% Similarity=0.199 Sum_probs=87.8
Q ss_pred CeEEEEECCcc-H----HHHHHHhhhcCCCCC-ceEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcC
Q psy10250 175 HTAAVCVYPAR-V----VDVIKVLDRENARDD-VKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNN 248 (387)
Q Consensus 175 ~~~aVcV~P~~-v----~~a~~~L~~~~~~~~-v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g 248 (387)
|+.++.|--+. + ....+.++.. ++ +++ +=||.+.... ..| .|.++=.+.|.++
T Consensus 25 gtdai~vGGS~~v~~~~~~~~~~ik~~---~~~~Pv----ilfp~~~~~i-----------~~~---aDa~l~~svlns~ 83 (219)
T cd02812 25 GTDAIMVGGSDGVSSTLDNVVRLIKRI---RRPVPV----ILFPSNPEAV-----------SPG---ADAYLFPSVLNSG 83 (219)
T ss_pred CCCEEEECCccchhhhHHHHHHHHHHh---cCCCCE----EEeCCCcccc-----------CcC---CCEEEEEeeecCC
Confidence 55677776554 4 4445556542 22 333 3599887654 233 5566666777777
Q ss_pred ChhHHHH-HHHHHHHHhC----------------CCcceEEEEeec-cCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCC
Q psy10250 249 QWPELFS-EVKQMKEKCG----------------EKIHMKTILAVG-ELKTSENIYCASMTAMFAGSDFIKTSTGKEKTN 310 (387)
Q Consensus 249 ~~~~v~~-Ei~~v~~~~~----------------~~~~lKvIlEt~-~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~g 310 (387)
|..++.. .+..+...-+ ++..+--+-++- .+ ++|++..-++.+..-|..+|=.- |-+. .
T Consensus 84 n~~~i~g~~~~~~~~~~~~~~~~e~i~~gYiv~~~~~~v~~v~~a~~~~-~~e~~~ayA~aae~~g~~ivyLe-~SG~-~ 160 (219)
T cd02812 84 DPYWIIGAQAEAAPEVGKIIPWLELIPEGYLVLNPDSTVARVTGAKTDL-KPEDAAAYALAAEYLGMPIVYLE-YSGA-Y 160 (219)
T ss_pred CchHHHHHHHHHHHHhccccccccccceEEEEECCCCceeeeeccCcCC-CHHHHHHHHHHHHHcCCeEEEeC-CCCC-c
Confidence 8777653 2222221111 111122222222 34 57778777888888898877666 2122 2
Q ss_pred CChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 311 ATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 311 at~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
..+ +-|+.+++.++ .+.|=.-|||||.+||..++ .+|++
T Consensus 161 ~~~-------e~I~~v~~~~~-~~pl~vGGGIrs~e~a~~l~-----~aGAD 199 (219)
T cd02812 161 GPP-------EVVRAVKKVLG-DTPLIVGGGIRSGEQAKEMA-----EAGAD 199 (219)
T ss_pred CCH-------HHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHH-----HcCCC
Confidence 233 34555565552 46677899999999999999 58983
No 159
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=94.29 E-value=5.4 Score=38.51 Aligned_cols=130 Identities=14% Similarity=0.051 Sum_probs=76.9
Q ss_pred CeEEEEECCccHHHHHHHhhhcCCCCCceEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHH
Q psy10250 175 HTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELF 254 (387)
Q Consensus 175 ~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~ 254 (387)
..-.++++.+.+..+.+.++... ..+..+...+.. .+..+.+.-..-++.+.+.|++.|=++=-.|.+ ..+.+.
T Consensus 100 ~~iri~~~~s~~~~~~~~i~~ak-~~G~~v~~~~~~--~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~---~P~~v~ 173 (263)
T cd07943 100 DVVRVATHCTEADVSEQHIGAAR-KLGMDVVGFLMM--SHMASPEELAEQAKLMESYGADCVYVTDSAGAM---LPDDVR 173 (263)
T ss_pred CEEEEEechhhHHHHHHHHHHHH-HCCCeEEEEEEe--ccCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCc---CHHHHH
Confidence 44566777766555555443210 123443333111 234556666666888888999998554334533 466777
Q ss_pred HHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCC-CC--CCCCCChhh
Q psy10250 255 SEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTST-GK--EKTNATIPA 315 (387)
Q Consensus 255 ~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTST-Gf--~~~gat~~~ 315 (387)
+=++.+++..+. +-|+...=++...=..-+..|+++|+++|-||- |. +.+++..|.
T Consensus 174 ~lv~~l~~~~~~-----~~l~~H~Hn~~GlA~AN~laAi~aGa~~vd~s~~GlG~~aGN~~~E~ 232 (263)
T cd07943 174 ERVRALREALDP-----TPVGFHGHNNLGLAVANSLAAVEAGATRIDGSLAGLGAGAGNTPLEV 232 (263)
T ss_pred HHHHHHHHhCCC-----ceEEEEecCCcchHHHHHHHHHHhCCCEEEeecccccCCcCCccHHH
Confidence 777777765532 356776665544444446779999999999976 33 344555653
No 160
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=94.24 E-value=0.97 Score=46.20 Aligned_cols=121 Identities=12% Similarity=0.086 Sum_probs=77.6
Q ss_pred HHHHHHHHCCCCeeeeecCchhhh----c-------C--------ChhHHHHHHHHHHHHhCCC--cceEEEEe--ecc-
Q psy10250 223 HEIELLAKQKVDEVDIVIQRSLVL----N-------N--------QWPELFSEVKQMKEKCGEK--IHMKTILA--VGE- 278 (387)
Q Consensus 223 ~Ea~~Ai~~GAdEID~Vin~~~lk----~-------g--------~~~~v~~Ei~~v~~~~~~~--~~lKvIlE--t~~- 278 (387)
.-|+.|.+.|.|-|++=.--|+|. | . +...+.+=+++|++++++. +-+|+--+ ..+
T Consensus 148 ~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~ 227 (361)
T cd04747 148 RAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYT 227 (361)
T ss_pred HHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccc
Confidence 346788889999999874443222 1 1 1234456678888888743 44555422 111
Q ss_pred ----CCChHHHHHHHHHHHHcCCCEEEcCCC-CC-CC--CCChhhhHhHHHHHHHHHHHcCCCceEeEeccC--------
Q psy10250 279 ----LKTSENIYCASMTAMFAGSDFIKTSTG-KE-KT--NATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGI-------- 342 (387)
Q Consensus 279 ----L~t~e~i~~a~~ia~~aGaDfVKTSTG-f~-~~--gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGI-------- 342 (387)
+ +.++....++.+.++|+|||-.|+| +. +. +... .-.+.+++.+ ++.|=++|||
T Consensus 228 ~~~g~-~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~-------~~~~~~k~~~--~~pv~~~G~i~~~~~~~~ 297 (361)
T cd04747 228 ARLAD-TPDELEALLAPLVDAGVDIFHCSTRRFWEPEFEGSEL-------NLAGWTKKLT--GLPTITVGSVGLDGDFIG 297 (361)
T ss_pred cCCCC-CHHHHHHHHHHHHHcCCCEEEecCCCccCCCcCccch-------hHHHHHHHHc--CCCEEEECCccccccccc
Confidence 4 5667777888889999999999998 21 11 1111 1234445544 3667889999
Q ss_pred ----------CCHHHHHHHHH
Q psy10250 343 ----------STFEDSVRWIY 353 (387)
Q Consensus 343 ----------rt~~~a~~~i~ 353 (387)
+|++++.+++.
T Consensus 298 ~~~~~~~~~~~~~~~a~~~l~ 318 (361)
T cd04747 298 AFAGDEGASPASLDRLLERLE 318 (361)
T ss_pred ccccccccccCCHHHHHHHHH
Confidence 69999999994
No 161
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=94.18 E-value=2.4 Score=40.67 Aligned_cols=151 Identities=17% Similarity=0.208 Sum_probs=87.9
Q ss_pred CCCeEEEEECCcc------HHHHHHHhhhcCCCCCceEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhh
Q psy10250 173 NVHTAAVCVYPAR------VVDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVL 246 (387)
Q Consensus 173 ~~~~~aVcV~P~~------v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk 246 (387)
+.|+.++.|--+. +....+.++. ..+++ + =||.+..... .| .|.++=.+.|.
T Consensus 25 ~~gtdai~vGGS~~vt~~~~~~~v~~ik~----~~lPv--i--lfp~~~~~i~-----------~~---aDa~l~~svlN 82 (223)
T TIGR01768 25 ESGTDAILIGGSQGVTYEKTDTLIEALRR----YGLPI--I--LFPSNPTNVS-----------RD---ADALFFPSVLN 82 (223)
T ss_pred hcCCCEEEEcCCCcccHHHHHHHHHHHhc----cCCCE--E--EeCCCccccC-----------cC---CCEEEEEEeec
Confidence 4566777776554 3333444553 34443 3 3996655432 33 55566567777
Q ss_pred cCChhHHHH-HHHHHHHHhCCCcceEEEE----------------eecc--CCChHHHHHHHHHHHH-cCCC--EEEcCC
Q psy10250 247 NNQWPELFS-EVKQMKEKCGEKIHMKTIL----------------AVGE--LKTSENIYCASMTAMF-AGSD--FIKTST 304 (387)
Q Consensus 247 ~g~~~~v~~-Ei~~v~~~~~~~~~lKvIl----------------Et~~--L~t~e~i~~a~~ia~~-aGaD--fVKTST 304 (387)
++|..++.. .+..+... +. ..+.+|- ++-. + +.+++..++.+|.+ -|-. |+--|.
T Consensus 83 s~~~~~iig~~~~~~~~~-~~-~~~e~ip~gYiv~~~~~~v~~v~~a~~~p~-~~~~~aa~~~lA~~~~g~~~vYlE~gs 159 (223)
T TIGR01768 83 SDDPYWIIGAQIEAAPKF-KK-IGEEIIPEGYIIVNPGGAAARVTKAKPIPY-DKEDLAAYAAMAEEMLGMPIIYLEAGS 159 (223)
T ss_pred CCCchHHHhHHHHHHHHH-hh-hcceecceEEEEECCCcceeecccccccCC-CcHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 777777543 23333321 11 1122222 2222 4 45667766666666 5776 778888
Q ss_pred CCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 305 GKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 305 Gf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
|++. +..++ .|+.+++.++ .+.|=.-|||||.+|+..++ .+|+|
T Consensus 160 ~~g~-~v~~e-------~i~~v~~~~~-~~pl~vGGGIrs~e~a~~l~-----~aGAD 203 (223)
T TIGR01768 160 GAPE-PVPPE-------LVAEVKKVLD-KARLFVGGGIRSVEKAREMA-----EAGAD 203 (223)
T ss_pred CCCC-CcCHH-------HHHHHHHHcC-CCCEEEecCCCCHHHHHHHH-----HcCCC
Confidence 8853 34453 4555566553 46777799999999999999 47984
No 162
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=94.12 E-value=0.54 Score=46.08 Aligned_cols=88 Identities=23% Similarity=0.276 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCC
Q psy10250 254 FSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKK 333 (387)
Q Consensus 254 ~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~ 333 (387)
..-++.+++.+++ ..|+.+|+.-+ +|..+ |.++|+|||--.. .+++ .++...+..+.+
T Consensus 169 ~~~v~~~r~~~~~--~~~Igvev~s~---eea~~----A~~~gaDyI~ld~------~~~e-------~l~~~~~~~~~~ 226 (268)
T cd01572 169 TEAVRRARAAAPF--TLKIEVEVETL---EQLKE----ALEAGADIIMLDN------MSPE-------ELREAVALLKGR 226 (268)
T ss_pred HHHHHHHHHhCCC--CCeEEEEECCH---HHHHH----HHHcCCCEEEECC------cCHH-------HHHHHHHHcCCC
Confidence 4567778877764 36888998755 55544 4579999996543 2343 555555555557
Q ss_pred ceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccch
Q psy10250 334 IGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL 376 (387)
Q Consensus 334 ~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~ 376 (387)
+.|=|+||| |.+.+..|. ..|+ +.|.++++
T Consensus 227 ipi~AiGGI-~~~ni~~~a-----~~Gv-------d~Iav~sl 256 (268)
T cd01572 227 VLLEASGGI-TLENIRAYA-----ETGV-------DYISVGAL 256 (268)
T ss_pred CcEEEECCC-CHHHHHHHH-----HcCC-------CEEEEEee
Confidence 889999999 699999999 5898 58877764
No 163
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=94.10 E-value=0.92 Score=45.79 Aligned_cols=122 Identities=13% Similarity=0.041 Sum_probs=78.4
Q ss_pred HHHHHHHCCCCeeeeecCch----hhhcC---------------ChhHHHHHHHHHHHHhCC-CcceEEEEeec------
Q psy10250 224 EIELLAKQKVDEVDIVIQRS----LVLNN---------------QWPELFSEVKQMKEKCGE-KIHMKTILAVG------ 277 (387)
Q Consensus 224 Ea~~Ai~~GAdEID~Vin~~----~lk~g---------------~~~~v~~Ei~~v~~~~~~-~~~lKvIlEt~------ 277 (387)
-|+.|.+.|.|-|++=.--| .++|- +...+.+=+++|+++++. .+-+|+=.+-.
T Consensus 157 aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~ 236 (338)
T cd02933 157 AARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGD 236 (338)
T ss_pred HHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCC
Confidence 46788888999999843322 22222 234455667888888865 34455433210
Q ss_pred cCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHH
Q psy10250 278 ELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 353 (387)
Q Consensus 278 ~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~ 353 (387)
-. +.++....++.+.++|+|||-.|.|.... .. + ....+.++.+++.+ ++.|=++|||+ .++|.+++.
T Consensus 237 ~~-~~ee~~~~~~~l~~~g~d~i~vs~g~~~~-~~-~--~~~~~~~~~ik~~~--~ipvi~~G~i~-~~~a~~~l~ 304 (338)
T cd02933 237 SD-PEATFSYLAKELNKRGLAYLHLVEPRVAG-NP-E--DQPPDFLDFLRKAF--KGPLIAAGGYD-AESAEAALA 304 (338)
T ss_pred CC-CHHHHHHHHHHHHHcCCcEEEEecCCCCC-cc-c--ccchHHHHHHHHHc--CCCEEEECCCC-HHHHHHHHH
Confidence 12 45677788888999999999998884221 11 1 11224455566665 47788999997 999999994
No 164
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.10 E-value=0.46 Score=47.21 Aligned_cols=92 Identities=13% Similarity=0.268 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcC
Q psy10250 252 ELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSG 331 (387)
Q Consensus 252 ~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~ 331 (387)
.+.+-++++++.++. .|+++|..-| +|..+ ++++|+|-|-== +.+++.++ ++++.+++ .+
T Consensus 185 ~i~~ai~~~r~~~~~---~kIeVEv~tl---~ea~e----al~~gaDiI~LD------nm~~e~vk---~av~~~~~-~~ 244 (289)
T PRK07896 185 SVVAALRAVRAAAPD---LPCEVEVDSL---EQLDE----VLAEGAELVLLD------NFPVWQTQ---EAVQRRDA-RA 244 (289)
T ss_pred cHHHHHHHHHHhCCC---CCEEEEcCCH---HHHHH----HHHcCCCEEEeC------CCCHHHHH---HHHHHHhc-cC
Confidence 456667777765543 6899999755 44443 478999999732 44566444 34443333 36
Q ss_pred CCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccch
Q psy10250 332 KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL 376 (387)
Q Consensus 332 ~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~ 376 (387)
+++.+=+|||| |.+.+.+|. ..|+ +.|.+|+.
T Consensus 245 ~~v~ieaSGGI-~~~ni~~yA-----~tGv-------D~Is~gal 276 (289)
T PRK07896 245 PTVLLESSGGL-TLDTAAAYA-----ETGV-------DYLAVGAL 276 (289)
T ss_pred CCEEEEEECCC-CHHHHHHHH-----hcCC-------CEEEeChh
Confidence 78999999999 577888888 5898 58888764
No 165
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.06 E-value=0.58 Score=46.14 Aligned_cols=89 Identities=29% Similarity=0.325 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCC
Q psy10250 253 LFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGK 332 (387)
Q Consensus 253 v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~ 332 (387)
+.+-+..+++..++ ..++-+|+.- .+|..+| .++|+|||- +. +.+++ .++...+..+.
T Consensus 174 ~~~~v~~aR~~~~~--~~~Igvsv~t---leea~~A----~~~gaDyI~----lD--~~~~e-------~l~~~~~~~~~ 231 (277)
T PRK08072 174 ITKAVTSVREKLGH--MVKIEVETET---EEQVREA----VAAGADIIM----FD--NRTPD-------EIREFVKLVPS 231 (277)
T ss_pred HHHHHHHHHHhCCC--CCEEEEEeCC---HHHHHHH----HHcCCCEEE----EC--CCCHH-------HHHHHHHhcCC
Confidence 77788888887764 3578888874 4665444 579999994 32 34554 55555555555
Q ss_pred CceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccch
Q psy10250 333 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL 376 (387)
Q Consensus 333 ~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~ 376 (387)
++.+=|+||| |.+.+.++. ..|+ +.|-+|++
T Consensus 232 ~i~i~AiGGI-t~~ni~~~a-----~~Gv-------d~IAvg~l 262 (277)
T PRK08072 232 AIVTEASGGI-TLENLPAYG-----GTGV-------DYISLGFL 262 (277)
T ss_pred CceEEEECCC-CHHHHHHHH-----HcCC-------CEEEEChh
Confidence 6667799999 899999999 5898 57766653
No 166
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=93.97 E-value=2.2 Score=43.75 Aligned_cols=128 Identities=20% Similarity=0.227 Sum_probs=80.5
Q ss_pred HHHHHHHCCCCeeeeecCchhhhcC-----------Ch--------hHHHHHHHHHHHHhCCCcceEEEEeeccC-C---
Q psy10250 224 EIELLAKQKVDEVDIVIQRSLVLNN-----------QW--------PELFSEVKQMKEKCGEKIHMKTILAVGEL-K--- 280 (387)
Q Consensus 224 Ea~~Ai~~GAdEID~Vin~~~lk~g-----------~~--------~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L-~--- 280 (387)
-|+.|.+.|.|-|++---=|+|.+. .| ..+.+=+++|++++++..++-+=|-...+ .
T Consensus 154 AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g 233 (363)
T COG1902 154 AARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGG 233 (363)
T ss_pred HHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCC
Confidence 4778999999999987544444322 22 23455668888888764444444444333 1
Q ss_pred -ChHHHHHHHHHHHHcC-CCEEEcCCCCCCCCCChhhhH--hHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHH
Q psy10250 281 -TSENIYCASMTAMFAG-SDFIKTSTGKEKTNATIPAGI--IMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 353 (387)
Q Consensus 281 -t~e~i~~a~~ia~~aG-aDfVKTSTGf~~~gat~~~~~--~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~ 353 (387)
+.++....++...+.| .|||--|.|-...+.++.... --..-.+.+++.+ ++.+=++|||++.++|.++++
T Consensus 234 ~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~--~~pvi~~G~i~~~~~Ae~~l~ 308 (363)
T COG1902 234 LTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAV--RIPVIAVGGINDPEQAEEILA 308 (363)
T ss_pred CCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHH
Confidence 4567778888899999 799999988542222111110 0001222333333 388899999999999999994
No 167
>PLN02979 glycolate oxidase
Probab=93.95 E-value=0.34 Score=49.57 Aligned_cols=90 Identities=22% Similarity=0.214 Sum_probs=60.6
Q ss_pred HHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCc
Q psy10250 255 SEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKI 334 (387)
Q Consensus 255 ~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~ 334 (387)
++|+.+++..+.+.++|=|+ +.+ -++.++++|+|+|--|.. +.+. +..+---++.+..+++..++++
T Consensus 213 ~dl~wlr~~~~~PvivKgV~------~~~----dA~~a~~~Gvd~I~Vsnh-GGrq--ld~~p~t~~~L~ei~~~~~~~~ 279 (366)
T PLN02979 213 KDVQWLQTITKLPILVKGVL------TGE----DARIAIQAGAAGIIVSNH-GARQ--LDYVPATISALEEVVKATQGRI 279 (366)
T ss_pred HHHHHHHhccCCCEEeecCC------CHH----HHHHHHhcCCCEEEECCC-CcCC--CCCchhHHHHHHHHHHHhCCCC
Confidence 67888887766557788773 333 245789999999866552 2221 1111111134555556667889
Q ss_pred eEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 335 GLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 335 gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
.|=++||||+..|+.+-+ .+||+
T Consensus 280 ~Vi~dGGIr~G~Di~KAL-----ALGAd 302 (366)
T PLN02979 280 PVFLDGGVRRGTDVFKAL-----ALGAS 302 (366)
T ss_pred eEEEeCCcCcHHHHHHHH-----HcCCC
Confidence 999999999999999999 48995
No 168
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=93.95 E-value=0.55 Score=46.25 Aligned_cols=139 Identities=11% Similarity=0.106 Sum_probs=90.7
Q ss_pred HHHHHHHCCCCeeeeecCchhhh-----cCChhHHHHHHHHHHHHhCC-CcceEEEEee---ccCCChHHHHHHHHHHHH
Q psy10250 224 EIELLAKQKVDEVDIVIQRSLVL-----NNQWPELFSEVKQMKEKCGE-KIHMKTILAV---GELKTSENIYCASMTAMF 294 (387)
Q Consensus 224 Ea~~Ai~~GAdEID~Vin~~~lk-----~g~~~~v~~Ei~~v~~~~~~-~~~lKvIlEt---~~L~t~e~i~~a~~ia~~ 294 (387)
.++.|++.|+++|.+++..+-.. ....++..+++..+++.+++ +..+-+-+|+ ++-.+++.+.+.++.+.+
T Consensus 79 ~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~ 158 (280)
T cd07945 79 SVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSD 158 (280)
T ss_pred HHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHH
Confidence 67889999999999998554322 24678888899988888764 3567778885 223367888899999999
Q ss_pred cCCCEE--EcCCCCCCCCCChhhhHhHHHHHHHHHHHcC-CCceEeEec--cCCCHHHHHHHHHHHHHhcCCCccCCCcc
Q psy10250 295 AGSDFI--KTSTGKEKTNATIPAGIIMCSAIKHFHKLSG-KKIGLKPAG--GISTFEDSVRWIYLVLIMLGPDWLNKDLF 369 (387)
Q Consensus 295 aGaDfV--KTSTGf~~~gat~~~~~~m~~~v~~~~~~~~-~~~gIKasG--GIrt~~~a~~~i~l~~~~~Ga~w~~~~~~ 369 (387)
+|+|-| +=++|. ++|..+..+++.+ ++..+ -.+++..== |--. ..++.-+ ++|++|++....
T Consensus 159 ~G~~~i~l~DT~G~----~~P~~v~~l~~~l---~~~~~~~~i~~H~Hnd~Gla~-AN~laA~-----~aGa~~vd~s~~ 225 (280)
T cd07945 159 LPIKRIMLPDTLGI----LSPFETYTYISDM---VKRYPNLHFDFHAHNDYDLAV-ANVLAAV-----KAGIKGLHTTVN 225 (280)
T ss_pred cCCCEEEecCCCCC----CCHHHHHHHHHHH---HhhCCCCeEEEEeCCCCCHHH-HHHHHHH-----HhCCCEEEEecc
Confidence 999965 556664 6787666555444 44443 233333210 1111 1222223 689998887777
Q ss_pred eeeccc
Q psy10250 370 RIGASS 375 (387)
Q Consensus 370 RIGtSs 375 (387)
=||-.+
T Consensus 226 GlGe~a 231 (280)
T cd07945 226 GLGERA 231 (280)
T ss_pred cccccc
Confidence 777543
No 169
>PRK09389 (R)-citramalate synthase; Provisional
Probab=93.93 E-value=4.2 Score=43.27 Aligned_cols=140 Identities=15% Similarity=0.118 Sum_probs=91.8
Q ss_pred HHHHHHHHHCCCCeeeeecCchhh-----hcCChhHHHHHHHHHHHHhCC-CcceEEEEeeccCCChHHHHHHHHHHHHc
Q psy10250 222 LHEIELLAKQKVDEVDIVIQRSLV-----LNNQWPELFSEVKQMKEKCGE-KIHMKTILAVGELKTSENIYCASMTAMFA 295 (387)
Q Consensus 222 ~~Ea~~Ai~~GAdEID~Vin~~~l-----k~g~~~~v~~Ei~~v~~~~~~-~~~lKvIlEt~~L~t~e~i~~a~~ia~~a 295 (387)
...++.|++.|++.|.+++..+-+ .....+++.+.+...++.+.. +..+-+=.|...-.+++-+.+.++.+.++
T Consensus 76 ~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~ 155 (488)
T PRK09389 76 KVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEA 155 (488)
T ss_pred HHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhC
Confidence 556888999999999999887654 234667788888877776653 34677778888776778888999999999
Q ss_pred CCCEEEc--CCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCC--HHHHHHHHHHHHHhcCCCccCCCccee
Q psy10250 296 GSDFIKT--STGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGIST--FEDSVRWIYLVLIMLGPDWLNKDLFRI 371 (387)
Q Consensus 296 GaDfVKT--STGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt--~~~a~~~i~l~~~~~Ga~w~~~~~~RI 371 (387)
|+|-|-= .+| .++|+.+..+++.+ ++..+-.+++..- .+ +..|..+..+ ++|++|++...+=|
T Consensus 156 Ga~~i~l~DTvG----~~~P~~~~~lv~~l---~~~~~v~l~~H~H---ND~GlAvANalaAv---~aGa~~Vd~Ti~Gi 222 (488)
T PRK09389 156 GADRICFCDTVG----ILTPEKTYELFKRL---SELVKGPVSIHCH---NDFGLAVANTLAAL---AAGADQVHVTINGI 222 (488)
T ss_pred CCCEEEEecCCC----CcCHHHHHHHHHHH---HhhcCCeEEEEec---CCccHHHHHHHHHH---HcCCCEEEEEcccc
Confidence 9997643 445 47787766654444 3333323333321 12 1222222221 69998887666666
Q ss_pred ecc
Q psy10250 372 GAS 374 (387)
Q Consensus 372 GtS 374 (387)
|-.
T Consensus 223 GER 225 (488)
T PRK09389 223 GER 225 (488)
T ss_pred ccc
Confidence 654
No 170
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=93.89 E-value=0.55 Score=46.80 Aligned_cols=88 Identities=20% Similarity=0.208 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCC
Q psy10250 253 LFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGK 332 (387)
Q Consensus 253 v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~ 332 (387)
+.+-++++++.++. .|+.+|..-| +|.. .++++|+|.|-= .+.+++. ++...+..++
T Consensus 195 i~~av~~~r~~~~~---~kIeVEv~sl---eea~----ea~~~gaDiI~L------Dn~s~e~-------~~~av~~~~~ 251 (296)
T PRK09016 195 IRQAVEKAFWLHPD---VPVEVEVENL---DELD----QALKAGADIIML------DNFTTEQ-------MREAVKRTNG 251 (296)
T ss_pred HHHHHHHHHHhCCC---CCEEEEeCCH---HHHH----HHHHcCCCEEEe------CCCChHH-------HHHHHHhhcC
Confidence 66677777765554 5899999855 4443 367899999973 2335553 3333333456
Q ss_pred CceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccch
Q psy10250 333 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL 376 (387)
Q Consensus 333 ~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~ 376 (387)
++.|=+|||| |.+.+.+|- ..|+ +.|.+|++
T Consensus 252 ~~~ieaSGGI-~~~ni~~yA-----~tGV-------D~Is~gal 282 (296)
T PRK09016 252 RALLEVSGNV-TLETLREFA-----ETGV-------DFISVGAL 282 (296)
T ss_pred CeEEEEECCC-CHHHHHHHH-----hcCC-------CEEEeCcc
Confidence 8999999999 577888888 5898 57777653
No 171
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=93.86 E-value=1.7 Score=44.49 Aligned_cols=126 Identities=13% Similarity=0.058 Sum_probs=76.2
Q ss_pred HHHHHHHHCCCCeeeeecCchhh----hc---------------CChhHHHHHHHHHHHHhCCCcceEEEEeec------
Q psy10250 223 HEIELLAKQKVDEVDIVIQRSLV----LN---------------NQWPELFSEVKQMKEKCGEKIHMKTILAVG------ 277 (387)
Q Consensus 223 ~Ea~~Ai~~GAdEID~Vin~~~l----k~---------------g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~------ 277 (387)
..|+.|.+.|.|-||+=.--|+| +| ++...+.+=+++|+++++++.++++=|-..
T Consensus 154 ~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~ 233 (370)
T cd02929 154 DAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPG 233 (370)
T ss_pred HHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCC
Confidence 34678888999999984332222 21 223556677888998887545566544221
Q ss_pred -cCCChHHHHHHHHHHHHcCCCEEEcCCCCCC-CCCCh---hhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHH
Q psy10250 278 -ELKTSENIYCASMTAMFAGSDFIKTSTGKEK-TNATI---PAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWI 352 (387)
Q Consensus 278 -~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~-~gat~---~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i 352 (387)
.+ +.++-...++...+. +||+.-|.|... .+.+. +... ..+.++.+++.+ ++.|=++|||++.+++..++
T Consensus 234 g~~-~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~-~~~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l 308 (370)
T cd02929 234 GIE-SEGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGH-QEPYIKFVKQVT--SKPVVGVGRFTSPDKMVEVV 308 (370)
T ss_pred CCC-CHHHHHHHHHHHHhh-CCEEEecCCCccccccccccCCccc-cHHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHH
Confidence 13 445555566665544 799998888421 11111 1111 123445566654 35678899999999999999
Q ss_pred H
Q psy10250 353 Y 353 (387)
Q Consensus 353 ~ 353 (387)
.
T Consensus 309 ~ 309 (370)
T cd02929 309 K 309 (370)
T ss_pred H
Confidence 4
No 172
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.83 E-value=0.63 Score=46.06 Aligned_cols=89 Identities=18% Similarity=0.167 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCC
Q psy10250 253 LFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGK 332 (387)
Q Consensus 253 v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~ 332 (387)
+.+-++++++.++. ..|+++|+.-| +|..+ ++++|+|.|-= .+.+++ +++...+..++
T Consensus 180 i~~ai~~~r~~~~~--~~kIeVEv~tl---eea~e----a~~~gaDiI~L------Dn~s~e-------~l~~av~~~~~ 237 (281)
T PRK06106 180 VREAIRRARAGVGH--LVKIEVEVDTL---DQLEE----ALELGVDAVLL------DNMTPD-------TLREAVAIVAG 237 (281)
T ss_pred HHHHHHHHHHhCCC--CCcEEEEeCCH---HHHHH----HHHcCCCEEEe------CCCCHH-------HHHHHHHHhCC
Confidence 66777777776653 47899999855 45543 46999999972 334565 34444444566
Q ss_pred CceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccch
Q psy10250 333 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL 376 (387)
Q Consensus 333 ~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~ 376 (387)
+..+=+|||| |.+.+.+|. ..|. +.|.+|++
T Consensus 238 ~~~leaSGGI-~~~ni~~yA-----~tGV-------D~Is~Gal 268 (281)
T PRK06106 238 RAITEASGRI-TPETAPAIA-----ASGV-------DLISVGWL 268 (281)
T ss_pred CceEEEECCC-CHHHHHHHH-----hcCC-------CEEEeChh
Confidence 7779999999 578888888 5888 57777754
No 173
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=93.81 E-value=1.6 Score=42.74 Aligned_cols=127 Identities=17% Similarity=0.161 Sum_probs=75.2
Q ss_pred HHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHc-CCCEEEcC
Q psy10250 225 IELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFA-GSDFIKTS 303 (387)
Q Consensus 225 a~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~a-GaDfVKTS 303 (387)
++.|.+.|+|-+= +.+... +|...+.+.|.. .-++.|+=.+--++++.+ .+++..+ |-=|+-+.
T Consensus 112 ~~~~~~aGvdgvi-ipDLP~----------ee~~~~~~~~~~-~gi~~I~lv~PtT~~eri---~~i~~~a~gFIY~vS~ 176 (263)
T CHL00200 112 IKKISQAGVKGLI-IPDLPY----------EESDYLISVCNL-YNIELILLIAPTSSKSRI---QKIARAAPGCIYLVST 176 (263)
T ss_pred HHHHHHcCCeEEE-ecCCCH----------HHHHHHHHHHHH-cCCCEEEEECCCCCHHHH---HHHHHhCCCcEEEEcC
Confidence 6778888988873 345542 556666666654 236666655555344544 3444444 57787788
Q ss_pred CCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccchHHHHH
Q psy10250 304 TGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNIL 381 (387)
Q Consensus 304 TGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~~~il~ 381 (387)
+|+......+. .-+.+-++.+++.++ ..|=+=+||++.+|+..+. .+|+| --|=-|..++.+.
T Consensus 177 ~GvTG~~~~~~--~~~~~~i~~ir~~t~--~Pi~vGFGI~~~e~~~~~~-----~~GAD------GvVVGSalv~~i~ 239 (263)
T CHL00200 177 TGVTGLKTELD--KKLKKLIETIKKMTN--KPIILGFGISTSEQIKQIK-----GWNIN------GIVIGSACVQILL 239 (263)
T ss_pred CCCCCCCcccc--HHHHHHHHHHHHhcC--CCEEEECCcCCHHHHHHHH-----hcCCC------EEEECHHHHHHHH
Confidence 88754322221 112233444455443 3455567999999999998 58885 3444466666654
No 174
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=93.81 E-value=3.4 Score=39.32 Aligned_cols=162 Identities=19% Similarity=0.173 Sum_probs=97.9
Q ss_pred EEEECCccHHHHHHHhhhcCCCCCceEEEEe-cCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHH
Q psy10250 178 AVCVYPARVVDVIKVLDRENARDDVKVASVA-AGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSE 256 (387)
Q Consensus 178 aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVv-igFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~E 256 (387)
|+-+.-.-++..+..=. ..+++|...+ =+||.---....=+.|+++.++.||+-|-+= +-.-.+++.-.+|
T Consensus 47 AvgiR~~gv~dIkai~~----~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~D----aT~R~RP~~~~~~ 118 (229)
T COG3010 47 AVGIRIEGVEDIKAIRA----VVDVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFD----ATDRPRPDGDLEE 118 (229)
T ss_pred cceEeecchhhHHHHHh----hCCCCeEEEEecCCCCCCceecccHHHHHHHHHCCCcEEEee----cccCCCCcchHHH
Confidence 45555556666665322 2466665551 1577766666667899999999999875442 2233344432233
Q ss_pred HHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEc-CCCCCCCCCChhhhHhHHHHHHHHHHHcCCCce
Q psy10250 257 VKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKT-STGKEKTNATIPAGIIMCSAIKHFHKLSGKKIG 335 (387)
Q Consensus 257 i~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKT-STGf~~~gat~~~~~~m~~~v~~~~~~~~~~~g 335 (387)
+....+.+. .=.+=. -+|.|+- ..|..+|+|||=| =.||...+.++.. .|..++++....++.
T Consensus 119 ---~i~~~k~~~-~l~MAD---~St~ee~----l~a~~~G~D~IGTTLsGYT~~~~~~~~-----pDf~lvk~l~~~~~~ 182 (229)
T COG3010 119 ---LIARIKYPG-QLAMAD---CSTFEEG----LNAHKLGFDIIGTTLSGYTGYTEKPTE-----PDFQLVKQLSDAGCR 182 (229)
T ss_pred ---HHHHhhcCC-cEEEec---cCCHHHH----HHHHHcCCcEEecccccccCCCCCCCC-----CcHHHHHHHHhCCCe
Confidence 332233211 112222 3344443 5588899999976 3477654433332 245555666667788
Q ss_pred EeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeec
Q psy10250 336 LKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGA 373 (387)
Q Consensus 336 IKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGt 373 (387)
+=|=|.+.|+++|..-+ ++|++ +.-+|.
T Consensus 183 vIAEGr~~tP~~Ak~a~-----~~Ga~-----aVvVGs 210 (229)
T COG3010 183 VIAEGRYNTPEQAKKAI-----EIGAD-----AVVVGS 210 (229)
T ss_pred EEeeCCCCCHHHHHHHH-----HhCCe-----EEEECc
Confidence 99999999999999999 58984 445565
No 175
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=93.78 E-value=12 Score=40.80 Aligned_cols=203 Identities=15% Similarity=0.095 Sum_probs=116.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEecCCCCCCCCCCCcccccchhccccchhhhhhHHHHHHhhcccccccC----C-----CC
Q psy10250 72 TSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEFIDLTTL----S-----GD 142 (387)
Q Consensus 72 ~~e~i~~a~~~a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ID~T~L----~-----~~ 142 (387)
+.+++...+...-++|.+-|-.- +|||.+.... +.. |+--..++.+.+.+-.|.| . ..
T Consensus 25 ~~~d~l~ia~~ld~~G~~siE~~-----GGatf~~~~~-------~~~-e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~ 91 (593)
T PRK14040 25 RLDDMLPIAAKLDKVGYWSLESW-----GGATFDACIR-------FLG-EDPWERLRELKKAMPNTPQQMLLRGQNLLGY 91 (593)
T ss_pred CHHHHHHHHHHHHHcCCCEEEec-----CCcchhhhcc-------ccC-CCHHHHHHHHHHhCCCCeEEEEecCcceecc
Confidence 34666777878888999999972 3454332121 111 3333345555555554443 1 11
Q ss_pred --CCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEecCC---CCCCCC
Q psy10250 143 --DTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGF---PSGQYL 217 (387)
Q Consensus 143 --~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigF---P~G~~~ 217 (387)
...+-++.+++.|.. +....--|+...++++.....++-.. ..+..+... ++| | .++
T Consensus 92 ~~ypddvv~~~v~~a~~--------------~Gid~~rifd~lnd~~~~~~ai~~ak-~~G~~~~~~-i~yt~~p--~~~ 153 (593)
T PRK14040 92 RHYADDVVERFVERAVK--------------NGMDVFRVFDAMNDPRNLETALKAVR-KVGAHAQGT-LSYTTSP--VHT 153 (593)
T ss_pred ccCcHHHHHHHHHHHHh--------------cCCCEEEEeeeCCcHHHHHHHHHHHH-HcCCeEEEE-EEEeeCC--ccC
Confidence 123456778888771 12344556666667764444432110 124443333 355 4 456
Q ss_pred HHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCC
Q psy10250 218 LETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGS 297 (387)
Q Consensus 218 ~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGa 297 (387)
.+.=+.-++++.+.|||.|-+.=-.|.+ ....+++-++++++.. .+-|+...=+|...-...+..|+++|+
T Consensus 154 ~~~~~~~a~~l~~~Gad~i~i~Dt~G~l---~P~~~~~lv~~lk~~~------~~pi~~H~Hnt~GlA~An~laAieAGa 224 (593)
T PRK14040 154 LQTWVDLAKQLEDMGVDSLCIKDMAGLL---KPYAAYELVSRIKKRV------DVPLHLHCHATTGLSTATLLKAIEAGI 224 (593)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCc---CHHHHHHHHHHHHHhc------CCeEEEEECCCCchHHHHHHHHHHcCC
Confidence 6666677888899999988555334433 3677888888887654 233555544444444445677999999
Q ss_pred CEEEcCC-CCCC--CCCChh
Q psy10250 298 DFIKTST-GKEK--TNATIP 314 (387)
Q Consensus 298 DfVKTST-Gf~~--~gat~~ 314 (387)
|+|-|+- |++. +++.++
T Consensus 225 ~~vD~ai~glG~~~Gn~~le 244 (593)
T PRK14040 225 DGVDTAISSMSMTYGHSATE 244 (593)
T ss_pred CEEEeccccccccccchhHH
Confidence 9999875 4543 344444
No 176
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=93.76 E-value=9.1 Score=41.68 Aligned_cols=205 Identities=16% Similarity=0.120 Sum_probs=116.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEecCCCCCCCCCCCcccccchhccccchhhhhhHHHHHHhhcccccc---cC--CCC----
Q psy10250 72 TSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEFIDLT---TL--SGD---- 142 (387)
Q Consensus 72 ~~e~i~~a~~~a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ID~T---~L--~~~---- 142 (387)
+.+++...+....++|.+.|-.. +|+|-....++ ++ ++-.+.++++.+.+..+ .| .++
T Consensus 19 ~t~dkl~ia~~L~~~Gv~~IE~~-----GGatfd~~~~f----~~----e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~ 85 (582)
T TIGR01108 19 RTEDMLPIAEKLDDVGYWSLEVW-----GGATFDACIRF----LN----EDPWERLRELKKALPNTPLQMLLRGQNLLGY 85 (582)
T ss_pred CHHHHHHHHHHHHHcCCCEEEec-----CCccccccccc----CC----CCHHHHHHHHHHhCCCCEEEEEEcccccccc
Confidence 34556677778889999999973 34544322332 11 11122334443333322 22 111
Q ss_pred -CCHHH-HHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEecCCCCC-CCCHH
Q psy10250 143 -DTEAV-VETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPSG-QYLLE 219 (387)
Q Consensus 143 -~T~~~-i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G-~~~~e 219 (387)
..+++ ++.+++.|.. +....-.++.+.++++..+..++-.. ..+..+... ++|=.. .++.+
T Consensus 86 ~~ypddvv~~~v~~a~~--------------~Gvd~irif~~lnd~~n~~~~i~~ak-~~G~~v~~~-i~~t~~p~~~~~ 149 (582)
T TIGR01108 86 RHYADDVVERFVKKAVE--------------NGMDVFRIFDALNDPRNLQAAIQAAK-KHGAHAQGT-ISYTTSPVHTLE 149 (582)
T ss_pred ccCchhhHHHHHHHHHH--------------CCCCEEEEEEecCcHHHHHHHHHHHH-HcCCEEEEE-EEeccCCCCCHH
Confidence 12344 6777888872 13455667777777666655543110 134444444 243221 25667
Q ss_pred HHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCE
Q psy10250 220 TRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDF 299 (387)
Q Consensus 220 ~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDf 299 (387)
.=+.-++++.+.|||.|-+.=-.|.+ ....+++-++++++..+ +-|+...=+|...-...+..|+++|+|+
T Consensus 150 ~~~~~~~~~~~~Gad~I~i~Dt~G~~---~P~~v~~lv~~lk~~~~------~pi~~H~Hnt~Gla~An~laAveaGa~~ 220 (582)
T TIGR01108 150 TYLDLAEELLEMGVDSICIKDMAGIL---TPKAAYELVSALKKRFG------LPVHLHSHATTGMAEMALLKAIEAGADG 220 (582)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCc---CHHHHHHHHHHHHHhCC------CceEEEecCCCCcHHHHHHHHHHhCCCE
Confidence 77777889999999998554223432 36778888888887553 2355554544443334567799999999
Q ss_pred EEcCC-CCC--CCCCChh
Q psy10250 300 IKTST-GKE--KTNATIP 314 (387)
Q Consensus 300 VKTST-Gf~--~~gat~~ 314 (387)
|-||- |++ .+++.++
T Consensus 221 vd~ai~GlG~~tGn~~le 238 (582)
T TIGR01108 221 IDTAISSMSGGTSHPPTE 238 (582)
T ss_pred EEeccccccccccChhHH
Confidence 99976 343 3345554
No 177
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.72 E-value=0.67 Score=46.08 Aligned_cols=89 Identities=19% Similarity=0.175 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcC
Q psy10250 252 ELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSG 331 (387)
Q Consensus 252 ~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~ 331 (387)
.+.+-++++++.++. ..|+.+|+.-| ||..+ ++++|+|-|- -.+.+|+. ++...+..+
T Consensus 182 ~i~~av~~~r~~~~~--~~kIeVEv~tl---eea~~----a~~agaDiIm------LDnmspe~-------l~~av~~~~ 239 (290)
T PRK06559 182 SVQKAIAQARAYAPF--VKMVEVEVESL---AAAEE----AAAAGADIIM------LDNMSLEQ-------IEQAITLIA 239 (290)
T ss_pred cHHHHHHHHHHhCCC--CCeEEEECCCH---HHHHH----HHHcCCCEEE------ECCCCHHH-------HHHHHHHhc
Confidence 456677777766652 47999999755 55543 5689999996 23456763 444444445
Q ss_pred CCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccc
Q psy10250 332 KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS 375 (387)
Q Consensus 332 ~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs 375 (387)
+++.+=+|||| |.+.+.+|. ..|.| .|-+|+
T Consensus 240 ~~~~leaSGGI-~~~ni~~yA-----~tGVD-------~Is~ga 270 (290)
T PRK06559 240 GRSRIECSGNI-DMTTISRFR-----GLAID-------YVSSGS 270 (290)
T ss_pred CceEEEEECCC-CHHHHHHHH-----hcCCC-------EEEeCc
Confidence 68999999999 577888888 58984 666654
No 178
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.64 E-value=0.76 Score=45.48 Aligned_cols=91 Identities=16% Similarity=0.227 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHH
Q psy10250 250 WPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKL 329 (387)
Q Consensus 250 ~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~ 329 (387)
++.+.+-++++++.++. ..|+.+|+.-| ++... ++++|+|-|-= .+.+++ +++...+.
T Consensus 176 ~~~i~~av~~~r~~~~~--~~kIeVEv~sl---ee~~e----a~~~gaDiImL------Dn~s~e-------~l~~av~~ 233 (281)
T PRK06543 176 GLDLTEALRHVRAQLGH--TTHVEVEVDRL---DQIEP----VLAAGVDTIML------DNFSLD-------DLREGVEL 233 (281)
T ss_pred chHHHHHHHHHHHhCCC--CCcEEEEeCCH---HHHHH----HHhcCCCEEEE------CCCCHH-------HHHHHHHH
Confidence 44577778888776653 47999999866 44433 56899999962 345675 34444444
Q ss_pred cCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccc
Q psy10250 330 SGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS 375 (387)
Q Consensus 330 ~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs 375 (387)
.+++..+=+|||| |.+.+.+|. ..|.| +|-+|+
T Consensus 234 ~~~~~~leaSGgI-~~~ni~~yA-----~tGVD-------~Is~ga 266 (281)
T PRK06543 234 VDGRAIVEASGNV-NLNTVGAIA-----STGVD-------VISVGA 266 (281)
T ss_pred hCCCeEEEEECCC-CHHHHHHHH-----hcCCC-------EEEeCc
Confidence 5677889999999 578888888 58985 666654
No 179
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=93.53 E-value=8.4 Score=38.06 Aligned_cols=90 Identities=14% Similarity=0.028 Sum_probs=61.1
Q ss_pred CCCC-CCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHH
Q psy10250 210 GFPS-GQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCA 288 (387)
Q Consensus 210 gFP~-G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a 288 (387)
+-|. |..+.+.-+.-++.+.+.|||.|=+.=-.|.+ ....+++=++.+++..++ + -|+...=++.-.=..-
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~---~P~~v~~lv~~l~~~~~~---~--~i~~H~Hn~~Gla~AN 216 (287)
T PRK05692 145 GCPYEGEVPPEAVADVAERLFALGCYEISLGDTIGVG---TPGQVRAVLEAVLAEFPA---E--RLAGHFHDTYGQALAN 216 (287)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCcEEEeccccCcc---CHHHHHHHHHHHHHhCCC---C--eEEEEecCCCCcHHHH
Confidence 4474 46667777788889999999998555334443 577788888888876653 2 3455544343333334
Q ss_pred HHHHHHcCCCEEEcCCC-CC
Q psy10250 289 SMTAMFAGSDFIKTSTG-KE 307 (387)
Q Consensus 289 ~~ia~~aGaDfVKTSTG-f~ 307 (387)
+..|+++|+++|-+|.+ .|
T Consensus 217 ~laA~~aG~~~id~s~~GlG 236 (287)
T PRK05692 217 IYASLEEGITVFDASVGGLG 236 (287)
T ss_pred HHHHHHhCCCEEEEEccccC
Confidence 57799999999999874 54
No 180
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=93.53 E-value=0.73 Score=44.43 Aligned_cols=107 Identities=12% Similarity=0.114 Sum_probs=64.7
Q ss_pred HHHHHHHHHCCCCeeeee-cCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEE-eeccCCChHHHHHHHHHHHHcCCCE
Q psy10250 222 LHEIELLAKQKVDEVDIV-IQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTIL-AVGELKTSENIYCASMTAMFAGSDF 299 (387)
Q Consensus 222 ~~Ea~~Ai~~GAdEID~V-in~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIl-Et~~L~t~e~i~~a~~ia~~aGaDf 299 (387)
..|++.|++-|||=||+= ++.|+|= .++.++.+||.+. +++..++-.-+ +.++- +..+..+..-+...|+||
T Consensus 10 ~~EA~~a~~~gaDiID~K~P~~GaLG-A~~~~vi~~i~~~---~~~~~pvSAtiGDlp~~--p~~~~~aa~~~a~~Gvdy 83 (235)
T PF04476_consen 10 VEEAEEALAGGADIIDLKNPAEGALG-ALFPWVIREIVAA---VPGRKPVSATIGDLPMK--PGTASLAALGAAATGVDY 83 (235)
T ss_pred HHHHHHHHhCCCCEEEccCCCCCCCC-CCCHHHHHHHHHH---cCCCCceEEEecCCCCC--chHHHHHHHHHHhcCCCE
Confidence 689999999999999997 4556554 3556666666554 54434555444 55544 466777777777889999
Q ss_pred EEcCCCCCCCCCChh-hhHhHHHHHHHHHHHcCCCceEeE
Q psy10250 300 IKTSTGKEKTNATIP-AGIIMCSAIKHFHKLSGKKIGLKP 338 (387)
Q Consensus 300 VKTSTGf~~~gat~~-~~~~m~~~v~~~~~~~~~~~gIKa 338 (387)
||- |+.+. .+.+ ....|..-++.+++. ..+..+=+
T Consensus 84 vKv--Gl~g~-~~~~~a~e~l~~v~~av~~~-~~~~~vVA 119 (235)
T PF04476_consen 84 VKV--GLFGC-KDYDEAIEALEAVVRAVKDF-DPDKKVVA 119 (235)
T ss_pred EEE--ecCCC-CCHHHHHHHHHHHHHHHhhh-CCCcEEEE
Confidence 995 44322 3333 333342223444433 34444433
No 181
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.52 E-value=3.2 Score=39.34 Aligned_cols=116 Identities=17% Similarity=0.292 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCC
Q psy10250 218 LETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGS 297 (387)
Q Consensus 218 ~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGa 297 (387)
.+.=..-++.+.+.|.+-|++.++.. .-.+-|+.+++..++ +++=.+-..++++ .+.+.++||
T Consensus 26 ~~~a~~i~~al~~~Gi~~iEitl~~~--------~~~~~I~~l~~~~p~-----~~IGAGTVl~~~~----a~~a~~aGA 88 (212)
T PRK05718 26 LEDAVPLAKALVAGGLPVLEVTLRTP--------AALEAIRLIAKEVPE-----ALIGAGTVLNPEQ----LAQAIEAGA 88 (212)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCc--------cHHHHHHHHHHHCCC-----CEEEEeeccCHHH----HHHHHHcCC
Confidence 44444555666666899999985432 234455556654442 3333333335543 466788888
Q ss_pred CEEEcCCCCCC---------------CCCChhhhHh----------------H--HHHHHHHHHHcCCCceEeEeccCCC
Q psy10250 298 DFIKTSTGKEK---------------TNATIPAGII----------------M--CSAIKHFHKLSGKKIGLKPAGGIST 344 (387)
Q Consensus 298 DfVKTSTGf~~---------------~gat~~~~~~----------------m--~~~v~~~~~~~~~~~gIKasGGIrt 344 (387)
+|+ +|-|+.+ +-.|+..+.. + ...++.++.-.+ .+.+-++|||..
T Consensus 89 ~Fi-vsP~~~~~vi~~a~~~~i~~iPG~~TptEi~~a~~~Ga~~vKlFPa~~~gg~~~lk~l~~p~p-~~~~~ptGGV~~ 166 (212)
T PRK05718 89 QFI-VSPGLTPPLLKAAQEGPIPLIPGVSTPSELMLGMELGLRTFKFFPAEASGGVKMLKALAGPFP-DVRFCPTGGISP 166 (212)
T ss_pred CEE-ECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEEccchhccCHHHHHHHhccCC-CCeEEEeCCCCH
Confidence 888 4556642 2344433221 0 133444444443 588899999976
Q ss_pred HHHHHHHHH
Q psy10250 345 FEDSVRWIY 353 (387)
Q Consensus 345 ~~~a~~~i~ 353 (387)
+++..|+.
T Consensus 167 -~ni~~~l~ 174 (212)
T PRK05718 167 -ANYRDYLA 174 (212)
T ss_pred -HHHHHHHh
Confidence 78888883
No 182
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=93.46 E-value=0.47 Score=48.64 Aligned_cols=121 Identities=18% Similarity=0.243 Sum_probs=66.1
Q ss_pred HHHHHHHHCCCCeeeee---cCchhhh-cCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCC
Q psy10250 223 HEIELLAKQKVDEVDIV---IQRSLVL-NNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSD 298 (387)
Q Consensus 223 ~Ea~~Ai~~GAdEID~V---in~~~lk-~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaD 298 (387)
.-++.+++.|+|-|=+- .+-.... +++|. ++.++++.. .+.||. +-..+.+.. +-++++|+|
T Consensus 146 e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~----~l~~~i~~~----~IPVI~--G~V~t~e~A----~~~~~aGaD 211 (369)
T TIGR01304 146 EIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPL----NLKEFIGEL----DVPVIA--GGVNDYTTA----LHLMRTGAA 211 (369)
T ss_pred HHHHHHHHCCCCEEEEeccchhhhccCCCCCHH----HHHHHHHHC----CCCEEE--eCCCCHHHH----HHHHHcCCC
Confidence 44566778899774432 1111111 34555 455555433 256675 445454433 445679999
Q ss_pred EEEcCCCCC-----CCCCChhhhHhH---HHHHHHHHHHcCC-CceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 299 FIKTSTGKE-----KTNATIPAGIIM---CSAIKHFHKLSGK-KIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 299 fVKTSTGf~-----~~gat~~~~~~m---~~~v~~~~~~~~~-~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
+|.-+.|=+ ..+...+....+ ..+.+.|.+..++ .+-|=++|||++..++.+-+ .+||+
T Consensus 212 gV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAl-----AlGAd 279 (369)
T TIGR01304 212 GVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAI-----ACGAD 279 (369)
T ss_pred EEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHH-----HcCCC
Confidence 998222210 111112222222 2222334444553 58899999999999999999 58985
No 183
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=93.46 E-value=0.8 Score=44.99 Aligned_cols=90 Identities=19% Similarity=0.259 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCC
Q psy10250 254 FSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKK 333 (387)
Q Consensus 254 ~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~ 333 (387)
.+-++.+++.+++ .|+.+|+.-+ ++..+ |.++|+|||.-..=| ++..+ +.++.+++ ...+
T Consensus 171 ~~av~~~R~~~~~---~~IgVev~t~---eea~~----A~~~gaD~I~ld~~~------p~~l~---~~~~~~~~-~~~~ 230 (272)
T cd01573 171 LKALARLRATAPE---KKIVVEVDSL---EEALA----AAEAGADILQLDKFS------PEELA---ELVPKLRS-LAPP 230 (272)
T ss_pred HHHHHHHHHhCCC---CeEEEEcCCH---HHHHH----HHHcCCCEEEECCCC------HHHHH---HHHHHHhc-cCCC
Confidence 4556666665543 4778887644 55544 457999999866432 22221 22332322 1246
Q ss_pred ceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccch
Q psy10250 334 IGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL 376 (387)
Q Consensus 334 ~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~ 376 (387)
+.+=|+||| |.+.+.+|. ..|+ +.|.+|+.
T Consensus 231 i~i~AsGGI-~~~ni~~~~-----~~Gv-------d~I~vsai 260 (272)
T cd01573 231 VLLAAAGGI-NIENAAAYA-----AAGA-------DILVTSAP 260 (272)
T ss_pred ceEEEECCC-CHHHHHHHH-----HcCC-------cEEEEChh
Confidence 899999999 889999999 5898 57755553
No 184
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=93.37 E-value=0.73 Score=45.68 Aligned_cols=89 Identities=13% Similarity=0.142 Sum_probs=61.0
Q ss_pred CChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHH
Q psy10250 248 NQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFH 327 (387)
Q Consensus 248 g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~ 327 (387)
|.++.+.+-++++++.+++ .|+.+|+.-| |+..+ ++++|+|.|-= .+.+++.++. .++.++
T Consensus 171 g~~~~i~~av~~~r~~~~~---~kIeVEv~tl---eqa~e----a~~agaDiI~L------Dn~~~e~l~~---av~~~~ 231 (284)
T PRK06096 171 HDPQDWSGAINQLRRHAPE---KKIVVEADTP---KEAIA----ALRAQPDVLQL------DKFSPQQATE---IAQIAP 231 (284)
T ss_pred CCcccHHHHHHHHHHhCCC---CCEEEECCCH---HHHHH----HHHcCCCEEEE------CCCCHHHHHH---HHHHhh
Confidence 4455677788888876654 5799998744 55543 56899999974 3456764333 333322
Q ss_pred HHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 328 KLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 328 ~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
+ ..+++.+=+|||| |.+.+.+|. ..|.|
T Consensus 232 ~-~~~~~~leaSGGI-~~~ni~~yA-----~tGvD 259 (284)
T PRK06096 232 S-LAPHCTLSLAGGI-NLNTLKNYA-----DCGIR 259 (284)
T ss_pred c-cCCCeEEEEECCC-CHHHHHHHH-----hcCCC
Confidence 1 2468899999999 588888888 58985
No 185
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=93.21 E-value=3.2 Score=38.92 Aligned_cols=125 Identities=24% Similarity=0.301 Sum_probs=67.9
Q ss_pred HHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhC-CCcc--eEEE---Eee-ccCC-ChHHHHHHHHHHH
Q psy10250 222 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCG-EKIH--MKTI---LAV-GELK-TSENIYCASMTAM 293 (387)
Q Consensus 222 ~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~-~~~~--lKvI---lEt-~~L~-t~e~i~~a~~ia~ 293 (387)
..+++.+++.||+-+ |++-..+. +.+. +.++.+..+ +... +++- +.+ +... +.......++...
T Consensus 84 ~ed~~~~~~~Ga~~v--vlgs~~l~--d~~~----~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~ 155 (230)
T TIGR00007 84 LEDVEKLLDLGVDRV--IIGTAAVE--NPDL----VKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLE 155 (230)
T ss_pred HHHHHHHHHcCCCEE--EEChHHhh--CHHH----HHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHH
Confidence 456778888898874 55555443 3333 444444443 2111 1111 111 1111 0111234556678
Q ss_pred HcCCC-EEEc---CCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcc
Q psy10250 294 FAGSD-FIKT---STGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLF 369 (387)
Q Consensus 294 ~aGaD-fVKT---STGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~ 369 (387)
+.|++ ++=| ..|.. .|...+ .++.+++. ..+.|=++|||++.+++..+. ..|++ ..
T Consensus 156 ~~g~~~ii~~~~~~~g~~-~g~~~~-------~i~~i~~~--~~ipvia~GGi~~~~di~~~~-----~~Gad-----gv 215 (230)
T TIGR00007 156 ELGLEGIIYTDISRDGTL-SGPNFE-------LTKELVKA--VNVPVIASGGVSSIDDLIALK-----KLGVY-----GV 215 (230)
T ss_pred hCCCCEEEEEeecCCCCc-CCCCHH-------HHHHHHHh--CCCCEEEeCCCCCHHHHHHHH-----HCCCC-----EE
Confidence 89999 4534 33332 244443 34444444 347788999999999999988 47874 34
Q ss_pred eeecc
Q psy10250 370 RIGAS 374 (387)
Q Consensus 370 RIGtS 374 (387)
-||++
T Consensus 216 ~ig~a 220 (230)
T TIGR00007 216 IVGKA 220 (230)
T ss_pred EEeHH
Confidence 46654
No 186
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=93.21 E-value=11 Score=39.76 Aligned_cols=138 Identities=13% Similarity=0.125 Sum_probs=82.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCC-CcceEEEE--eeccCCChHHHHHHHH
Q psy10250 214 GQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGE-KIHMKTIL--AVGELKTSENIYCASM 290 (387)
Q Consensus 214 G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~-~~~lKvIl--Et~~L~t~e~i~~a~~ 290 (387)
...+-++....++.|++.|.|.|-+....+.+. . +...++.++. +..+-+-+ +.+--.+.+-..+.++
T Consensus 91 ~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~-----n----~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~ 161 (448)
T PRK12331 91 RNYADDVVESFVQKSVENGIDIIRIFDALNDVR-----N----LETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAK 161 (448)
T ss_pred ccCchhhHHHHHHHHHHCCCCEEEEEEecCcHH-----H----HHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHH
Confidence 556678888899999999999999998776553 1 3333333332 22322222 2222335577777888
Q ss_pred HHHHcCCCE--EEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeE--eccCCCHHHHHHHHHHHHHhcCCCccCC
Q psy10250 291 TAMFAGSDF--IKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKP--AGGISTFEDSVRWIYLVLIMLGPDWLNK 366 (387)
Q Consensus 291 ia~~aGaDf--VKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKa--sGGIrt~~~a~~~i~l~~~~~Ga~w~~~ 366 (387)
.+.++|+|- +|=++|. .+|..+..++..+ ++.++-.+++.. --|.-.. .+++-+ ++|++|++.
T Consensus 162 ~l~~~Gad~I~i~Dt~G~----l~P~~v~~lv~al---k~~~~~pi~~H~Hnt~GlA~A-N~laAi-----eaGad~vD~ 228 (448)
T PRK12331 162 EMQEMGADSICIKDMAGI----LTPYVAYELVKRI---KEAVTVPLEVHTHATSGIAEM-TYLKAI-----EAGADIIDT 228 (448)
T ss_pred HHHHcCCCEEEEcCCCCC----CCHHHHHHHHHHH---HHhcCCeEEEEecCCCCcHHH-HHHHHH-----HcCCCEEEe
Confidence 899999995 5666775 6777666554444 445544444443 1122222 222233 699998876
Q ss_pred Ccceeec
Q psy10250 367 DLFRIGA 373 (387)
Q Consensus 367 ~~~RIGt 373 (387)
...=+|-
T Consensus 229 sv~glg~ 235 (448)
T PRK12331 229 AISPFAG 235 (448)
T ss_pred eccccCC
Confidence 6665533
No 187
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=93.09 E-value=0.79 Score=46.43 Aligned_cols=119 Identities=19% Similarity=0.211 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHc
Q psy10250 216 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFA 295 (387)
Q Consensus 216 ~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~a 295 (387)
...+.-+.+|+.|.+.||....||--+.- +..+.+++.+-++.|++.. .+++.+-.|.| ++|+. +-..++
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~-~~~~~~~i~~~v~~Vk~~~----~le~c~slG~l-~~eq~----~~L~~a 153 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRG-PGRDMEEVVEAIKAVKEEL----GLEVCASLGML-TEEQA----EKLADA 153 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccC-CCccHHHHHHHHHHHHHhc----CcHHhhccCCC-CHHHH----HHHHHc
Confidence 45677899999999999999999987766 5566677777777777543 38899999988 66655 446789
Q ss_pred CCCEEEc----CCCCCC---CCCChhhhHhHHHHHHHHHHHcCCCceEeE-eccC----CCHHHHHHHH
Q psy10250 296 GSDFIKT----STGKEK---TNATIPAGIIMCSAIKHFHKLSGKKIGLKP-AGGI----STFEDSVRWI 352 (387)
Q Consensus 296 GaDfVKT----STGf~~---~gat~~~~~~m~~~v~~~~~~~~~~~gIKa-sGGI----rt~~~a~~~i 352 (387)
|+|+... |-=|.+ .+-|.++-.- .++.. .+.|+|+ |||| -|.+|-+.|+
T Consensus 154 Gvd~ynhNLeTs~~~y~~I~tt~t~edR~~---tl~~v-----k~~Gi~vcsGgI~GlGEs~eDri~~l 214 (335)
T COG0502 154 GVDRYNHNLETSPEFYENIITTRTYEDRLN---TLENV-----REAGIEVCSGGIVGLGETVEDRAELL 214 (335)
T ss_pred ChhheecccccCHHHHcccCCCCCHHHHHH---HHHHH-----HHcCCccccceEecCCCCHHHHHHHH
Confidence 9998765 554432 2345543222 22222 3467888 7888 6777755554
No 188
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=93.05 E-value=5.3 Score=38.18 Aligned_cols=118 Identities=14% Similarity=0.202 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcC
Q psy10250 217 LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAG 296 (387)
Q Consensus 217 ~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aG 296 (387)
..+.-+.|++...+.+-+ +++-+..-..| +++++.+...+. ++-. |... +.+|- .+|..+|
T Consensus 64 d~e~mi~eA~~l~~~~~n---v~IKIP~T~~G--------l~Ai~~L~~~GI--~vn~-T~vf-s~~Qa----~~Aa~aG 124 (220)
T PRK12655 64 DAQGMVEEAKRLRNAIPG---IVVKIPVTAEG--------LAAIKKLKKEGI--PTLG-TAVY-SAAQG----LLAALAG 124 (220)
T ss_pred CHHHHHHHHHHHHHhCCC---EEEEeCCCHHH--------HHHHHHHHHCCC--ceeE-eEec-CHHHH----HHHHHcC
Confidence 678888888888887632 55555544455 556655543322 2222 2234 44443 4677899
Q ss_pred CCEEEcCCCCCC-CCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 297 SDFIKTSTGKEK-TNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 297 aDfVKTSTGf~~-~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
++||----|.-. .|- +..-+++.++.+.+..+.+.+|.+| .+|+.+|+...+ .+|++
T Consensus 125 a~yIspyvgR~~~~g~---dg~~~i~~~~~~~~~~~~~tkILaA-S~r~~~~v~~~~-----~~G~d 182 (220)
T PRK12655 125 AKYVAPYVNRVDAQGG---DGIRMVQELQTLLEMHAPESMVLAA-SFKTPRQALDCL-----LAGCQ 182 (220)
T ss_pred CeEEEeecchHhHcCC---CHHHHHHHHHHHHHhcCCCcEEEEE-ecCCHHHHHHHH-----HcCCC
Confidence 999976656421 111 1122234555555666778889886 799999999988 58985
No 189
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.01 E-value=5.7 Score=37.66 Aligned_cols=62 Identities=23% Similarity=0.359 Sum_probs=39.8
Q ss_pred HHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCccee
Q psy10250 292 AMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRI 371 (387)
Q Consensus 292 a~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RI 371 (387)
|.++|+||||- |-.....+ +.++.++... +.+.+=+.|||. .+.+..|+ .+|+ ..+
T Consensus 125 A~~~Gad~vkl---FPa~~~G~-------~~ik~l~~~~-p~ip~~atGGI~-~~N~~~~l-----~aGa-------~~v 180 (213)
T PRK06552 125 ALEAGSEIVKL---FPGSTLGP-------SFIKAIKGPL-PQVNVMVTGGVN-LDNVKDWF-----AAGA-------DAV 180 (213)
T ss_pred HHHcCCCEEEE---CCcccCCH-------HHHHHHhhhC-CCCEEEEECCCC-HHHHHHHH-----HCCC-------cEE
Confidence 45567777774 21111223 2455555554 348889999998 68899999 5887 577
Q ss_pred eccchH
Q psy10250 372 GASSLL 377 (387)
Q Consensus 372 GtSs~~ 377 (387)
|.+|.+
T Consensus 181 avgs~l 186 (213)
T PRK06552 181 GIGGEL 186 (213)
T ss_pred EEchHH
Confidence 777654
No 190
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=92.99 E-value=15 Score=39.37 Aligned_cols=106 Identities=14% Similarity=0.059 Sum_probs=69.5
Q ss_pred cCCCCCC-CCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHH
Q psy10250 209 AGFPSGQ-YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYC 287 (387)
Q Consensus 209 igFP~G~-~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~ 287 (387)
.+.|.+. ...+.=+.-++.|.+.||+.|-+.=-.|.+ ....+.+-++.+++..++ .-.+.|+...=++.-.=..
T Consensus 228 f~~EDa~Rtd~efl~~~~~~a~~~Gad~I~l~DTvG~~---tP~~v~~lV~~l~~~~~~--~~~i~I~~H~HND~GlAvA 302 (503)
T PLN03228 228 FGCEDGGRSDKEFLCKILGEAIKAGATSVGIADTVGIN---MPHEFGELVTYVKANTPG--IDDIVFSVHCHNDLGLATA 302 (503)
T ss_pred eccccccccCHHHHHHHHHHHHhcCCCEEEEecCCCCC---CHHHHHHHHHHHHHHhcc--ccCceeEecccCCcChHHH
Confidence 3777555 445555777788999999998666445543 366777778888776553 1246788876644333333
Q ss_pred HHHHHHHcCCCEEEcCC-CCC--CCCCChhhhHhH
Q psy10250 288 ASMTAMFAGSDFIKTST-GKE--KTNATIPAGIIM 319 (387)
Q Consensus 288 a~~ia~~aGaDfVKTST-Gf~--~~gat~~~~~~m 319 (387)
-+..|+++||++|-+|- |.| .+++.+|.+..+
T Consensus 303 NslaAi~aGa~~Vd~Tv~GiGERaGNa~lEevv~~ 337 (503)
T PLN03228 303 NTIAGICAGARQVEVTINGIGERSGNASLEEVVMA 337 (503)
T ss_pred HHHHHHHhCCCEEEEeccccccccCCccHHHHHHH
Confidence 35679999999999865 454 356777654443
No 191
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=92.95 E-value=9.8 Score=37.50 Aligned_cols=143 Identities=14% Similarity=0.145 Sum_probs=89.4
Q ss_pred HHHHHHHHHCCCCeeeeecCchhhh-----cCChhHHHHHHHHHHHHhCC-CcceEEEEeeccCCCh-----HHHHHHHH
Q psy10250 222 LHEIELLAKQKVDEVDIVIQRSLVL-----NNQWPELFSEVKQMKEKCGE-KIHMKTILAVGELKTS-----ENIYCASM 290 (387)
Q Consensus 222 ~~Ea~~Ai~~GAdEID~Vin~~~lk-----~g~~~~v~~Ei~~v~~~~~~-~~~lKvIlEt~~L~t~-----e~i~~a~~ 290 (387)
...++.|++.|+++|.+++..+-.. ....+++.+.++.+++.++. +..+-+-+|-.-=.+. +-+.+.++
T Consensus 77 ~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~d~~~~v~~~~~~~~~ 156 (279)
T cd07947 77 KEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLEDITRADIYGFVLPFVNKLMK 156 (279)
T ss_pred HHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEEcccCCCcccchHHHHHHHHH
Confidence 3557889999999999998875332 34568888888888888754 3567777774322122 25667888
Q ss_pred HHHHcCCCE---EEcCCCCCCC---CCChhhhHhHHHHHHHHHHHcC-C--CceEeEeccCCCH----HHHHHHHHHHHH
Q psy10250 291 TAMFAGSDF---IKTSTGKEKT---NATIPAGIIMCSAIKHFHKLSG-K--KIGLKPAGGISTF----EDSVRWIYLVLI 357 (387)
Q Consensus 291 ia~~aGaDf---VKTSTGf~~~---gat~~~~~~m~~~v~~~~~~~~-~--~~gIKasGGIrt~----~~a~~~i~l~~~ 357 (387)
.+.++|+|. +.-++|...+ ...|+.+..+++.++ +..+ + .+++..= .|+ ..++.-+
T Consensus 157 ~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~---~~~~~p~~~l~~H~H---n~~Gla~AN~laA~----- 225 (279)
T cd07947 157 LSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLR---KDCGVPSENLEWHGH---NDFYKAVANAVAAW----- 225 (279)
T ss_pred HHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHH---HhcCCCCceEEEEec---CCCChHHHHHHHHH-----
Confidence 888999993 6788897543 223455555544443 3322 1 2333321 122 2223333
Q ss_pred hcCCCccCCCcceeeccc
Q psy10250 358 MLGPDWLNKDLFRIGASS 375 (387)
Q Consensus 358 ~~Ga~w~~~~~~RIGtSs 375 (387)
++|++|++....=+|-.+
T Consensus 226 ~aG~~~vd~sv~GlGe~a 243 (279)
T cd07947 226 LYGASWVNCTLLGIGERT 243 (279)
T ss_pred HhCCCEEEEecccccccc
Confidence 689998887777777654
No 192
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=92.91 E-value=0.93 Score=46.50 Aligned_cols=90 Identities=22% Similarity=0.212 Sum_probs=61.0
Q ss_pred HHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCc
Q psy10250 255 SEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKI 334 (387)
Q Consensus 255 ~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~ 334 (387)
++|+.+++..+.+.++|=|+ +.+ -++.|+++|+|.|--|.- +.+ .+..+.--++.+..+++.+++++
T Consensus 214 ~di~wlr~~~~~PiivKgV~------~~~----dA~~a~~~Gvd~I~Vsnh-GGr--qld~~~~t~~~L~ei~~av~~~~ 280 (367)
T PLN02493 214 KDVQWLQTITKLPILVKGVL------TGE----DARIAIQAGAAGIIVSNH-GAR--QLDYVPATISALEEVVKATQGRI 280 (367)
T ss_pred HHHHHHHhccCCCEEeecCC------CHH----HHHHHHHcCCCEEEECCC-CCC--CCCCchhHHHHHHHHHHHhCCCC
Confidence 56778887666557788773 333 346789999999877653 221 11111111234555556667889
Q ss_pred eEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 335 GLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 335 gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
.|=++||||+..|+.+-+ .+||+
T Consensus 281 ~vi~dGGIr~G~Dv~KAL-----ALGA~ 303 (367)
T PLN02493 281 PVFLDGGVRRGTDVFKAL-----ALGAS 303 (367)
T ss_pred eEEEeCCcCcHHHHHHHH-----HcCCC
Confidence 999999999999999999 48985
No 193
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=92.88 E-value=5.9 Score=37.84 Aligned_cols=155 Identities=15% Similarity=0.207 Sum_probs=89.3
Q ss_pred CCeEEEEECCccHHHHHH----Hhhh---cCCCCCceEE-EEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhh
Q psy10250 174 VHTAAVCVYPARVVDVIK----VLDR---ENARDDVKVA-SVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLV 245 (387)
Q Consensus 174 ~~~~aVcV~P~~v~~a~~----~L~~---~~~~~~v~v~-tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~l 245 (387)
+-+.+|..||+.+..... .+++ .. +..-.+. =| . ....+.-+.|++...+.+- .+++-+..-
T Consensus 20 ~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~-~~~~~v~~Qv-~-----~~d~e~mi~ea~~l~~~~~---ni~IKIP~T 89 (220)
T PRK12653 20 FPLAGVTTNPSIIAAGKKPLEVVLPQLHEAM-GGQGRLFAQV-M-----ATTAEGMVNDARKLRSIIA---DIVVKVPVT 89 (220)
T ss_pred CCccEEeCCHHHHHhcCCCHHHHHHHHHHHh-CCCCcEEEEE-e-----cCCHHHHHHHHHHHHHhCC---CEEEEeCCC
Confidence 457899999987764311 1111 00 0001122 23 2 2578888888988888763 366655544
Q ss_pred hcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHH
Q psy10250 246 LNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKH 325 (387)
Q Consensus 246 k~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~ 325 (387)
.+| +++++.+...+. ++- =|... +.+|- .+|..+||+||----|.-.. .-.+....+.+++.
T Consensus 90 ~~G--------l~A~~~L~~~GI--~vn-~T~vf-s~~Qa----~~Aa~aGa~yIspyvgR~~~--~g~dg~~~i~~i~~ 151 (220)
T PRK12653 90 AEG--------LAAIKMLKAEGI--PTL-GTAVY-GAAQG----LLSALAGAEYVAPYVNRIDA--QGGSGIQTVTDLQQ 151 (220)
T ss_pred HHH--------HHHHHHHHHcCC--Cee-EEEec-CHHHH----HHHHhcCCcEEEeecChHhh--cCCChHHHHHHHHH
Confidence 444 555655543322 322 23344 44544 34567999999766664211 11111222345556
Q ss_pred HHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 326 FHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 326 ~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
+.+..+.+.+|.+| .+|+.+|+.+.+ .+|++
T Consensus 152 ~~~~~~~~tkILaA-S~r~~~~v~~~~-----~~G~d 182 (220)
T PRK12653 152 LLKMHAPQAKVLAA-SFKTPRQALDCL-----LAGCE 182 (220)
T ss_pred HHHhcCCCcEEEEE-ecCCHHHHHHHH-----HcCCC
Confidence 66666778889886 799999999988 58985
No 194
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=92.81 E-value=5 Score=36.49 Aligned_cols=62 Identities=26% Similarity=0.374 Sum_probs=36.9
Q ss_pred HHHHcCCCEEEcCCCCCC---CCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 291 TAMFAGSDFIKTSTGKEK---TNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 291 ia~~aGaDfVKTSTGf~~---~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
.+.+.|+|||+.|.=|.. .+.++... .+.++.+.+..+ .+.|=+.||| +.+++..++ .+|++
T Consensus 111 ~a~~~g~dyi~~~~v~~t~~k~~~~~~~g---~~~l~~~~~~~~-~~pv~a~GGI-~~~~~~~~~-----~~G~~ 175 (196)
T TIGR00693 111 EAEAEGADYIGFGPIFPTPTKKDPAPPAG---VELLREIAATSI-DIPIVAIGGI-TLENAAEVL-----AAGAD 175 (196)
T ss_pred HHhHcCCCEEEECCccCCCCCCCCCCCCC---HHHHHHHHHhcC-CCCEEEECCc-CHHHHHHHH-----HcCCC
Confidence 367789999996543311 11111100 123444444333 4779999999 588888888 47873
No 195
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=92.75 E-value=1.7 Score=42.30 Aligned_cols=125 Identities=14% Similarity=0.025 Sum_probs=76.8
Q ss_pred eeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCC--CCCCCC
Q psy10250 235 EVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGK--EKTNAT 312 (387)
Q Consensus 235 EID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf--~~~gat 312 (387)
+-.-++|..-+.+.-.+.+.+++...++...+ .+ +|+-..-- +.++..++++.+.++|+|+|--..|- ...+.+
T Consensus 67 ~~~~~~n~~g~~~~g~~~~~~~i~~~~~~~~~-~p--vi~si~g~-~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~ 142 (289)
T cd02810 67 EQLGILNSFGLPNLGLDVWLQDIAKAKKEFPG-QP--LIASVGGS-SKEDYVELARKIERAGAKALELNLSCPNVGGGRQ 142 (289)
T ss_pred ccceEeecCCCCCcCHHHHHHHHHHHHhccCC-Ce--EEEEeccC-CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcc
Confidence 33345676666777788899999887754112 33 44444333 56788899999999999999865442 111111
Q ss_pred -hhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccC
Q psy10250 313 -IPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLN 365 (387)
Q Consensus 313 -~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~ 365 (387)
...-..+.+-++.+++.++-.+.+|.+++. +.++..++..++ .++|++++.
T Consensus 143 ~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~-~~~~~~~~a~~l-~~~Gad~i~ 194 (289)
T cd02810 143 LGQDPEAVANLLKAVKAAVDIPLLVKLSPYF-DLEDIVELAKAA-ERAGADGLT 194 (289)
T ss_pred cccCHHHHHHHHHHHHHccCCCEEEEeCCCC-CHHHHHHHHHHH-HHcCCCEEE
Confidence 112223334455566666677999999876 444444444322 268999884
No 196
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=92.65 E-value=7.6 Score=38.86 Aligned_cols=146 Identities=8% Similarity=0.057 Sum_probs=97.8
Q ss_pred CHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeec-cCCChHHHHHHHHHHHHc
Q psy10250 217 LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVG-ELKTSENIYCASMTAMFA 295 (387)
Q Consensus 217 ~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~-~L~t~e~i~~a~~ia~~a 295 (387)
+.+.-..+++++.+.|.+-+-+=+..+.+.....+...+-++++++++++ -+++.+... -+ +.++-.+.++...+.
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~--~~~l~vDaN~~~-~~~~a~~~~~~l~~~ 215 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGP--DVDLMVDANGRW-DLAEAIRLARALEEY 215 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCC--CCEEEEECCCCC-CHHHHHHHHHHhCcc
Confidence 56777889999999999988775433222222245556667888888875 356777664 45 667777777777788
Q ss_pred CCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceee-cc
Q psy10250 296 GSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIG-AS 374 (387)
Q Consensus 296 GaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIG-tS 374 (387)
|.+||--+.... .. +..+.+++.+ .+.|-+-+.+++++++..++. .-.++.++++..++| -+
T Consensus 216 ~i~~iEqP~~~~----~~-------~~~~~l~~~~--~ipi~~dE~~~~~~~~~~~i~----~~~~d~v~~k~~~~GGi~ 278 (357)
T cd03316 216 DLFWFEEPVPPD----DL-------EGLARLRQAT--SVPIAAGENLYTRWEFRDLLE----AGAVDIIQPDVTKVGGIT 278 (357)
T ss_pred CCCeEcCCCCcc----CH-------HHHHHHHHhC--CCCEEeccccccHHHHHHHHH----hCCCCEEecCccccCCHH
Confidence 999998554210 11 3444555442 355666667899999999995 345788899999997 45
Q ss_pred chHHHHHH
Q psy10250 375 SLLNNILQ 382 (387)
Q Consensus 375 s~~~il~~ 382 (387)
..+++..-
T Consensus 279 ~~~~i~~~ 286 (357)
T cd03316 279 EAKKIAAL 286 (357)
T ss_pred HHHHHHHH
Confidence 66666543
No 197
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=92.62 E-value=3.9 Score=40.79 Aligned_cols=82 Identities=20% Similarity=0.215 Sum_probs=49.8
Q ss_pred eEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHH
Q psy10250 270 MKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSV 349 (387)
Q Consensus 270 lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~ 349 (387)
+||+-..+.+ ++ ++.+.++|+|+|-- +|+..+|-+-.. - ...-++.+++.+ ++.|=++|||.+.+++.
T Consensus 110 ~~v~~~v~s~---~~----a~~a~~~GaD~Ivv-~g~eagGh~g~~-~-~~~ll~~v~~~~--~iPviaaGGI~~~~~~~ 177 (307)
T TIGR03151 110 VKVIPVVASV---AL----AKRMEKAGADAVIA-EGMESGGHIGEL-T-TMALVPQVVDAV--SIPVIAAGGIADGRGMA 177 (307)
T ss_pred CEEEEEcCCH---HH----HHHHHHcCCCEEEE-ECcccCCCCCCC-c-HHHHHHHHHHHh--CCCEEEECCCCCHHHHH
Confidence 5777655433 32 35677889999963 444332211100 0 012344444444 47788999999999999
Q ss_pred HHHHHHHHhcCCCccCCCcceeec
Q psy10250 350 RWIYLVLIMLGPDWLNKDLFRIGA 373 (387)
Q Consensus 350 ~~i~l~~~~~Ga~w~~~~~~RIGt 373 (387)
+++ .+|++ ..-+||
T Consensus 178 ~al-----~~GA~-----gV~iGt 191 (307)
T TIGR03151 178 AAF-----ALGAE-----AVQMGT 191 (307)
T ss_pred HHH-----HcCCC-----Eeecch
Confidence 999 48985 344555
No 198
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=92.62 E-value=2.2 Score=44.20 Aligned_cols=125 Identities=17% Similarity=0.189 Sum_probs=76.7
Q ss_pred HHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCC
Q psy10250 225 IELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTST 304 (387)
Q Consensus 225 a~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTST 304 (387)
++.+.+.|||-+=+- .. +..+.+.+-++.+++ .-+|++++..--.++.+..+ .+ ..++|+|-=.|
T Consensus 243 v~~~a~aGAD~vTVH--~e----a~~~ti~~ai~~akk-----~GikvgVD~lnp~tp~e~i~--~l--~~~vD~Vllht 307 (391)
T PRK13307 243 ARMAADATADAVVIS--GL----APISTIEKAIHEAQK-----TGIYSILDMLNVEDPVKLLE--SL--KVKPDVVELHR 307 (391)
T ss_pred HHHHHhcCCCEEEEe--cc----CCHHHHHHHHHHHHH-----cCCEEEEEEcCCCCHHHHHH--Hh--hCCCCEEEEcc
Confidence 777888888875433 21 233334444444433 23789998655434433322 22 66999998888
Q ss_pred CCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccch
Q psy10250 305 GKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL 376 (387)
Q Consensus 305 Gf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~ 376 (387)
|..+.+..+ +.+.|+.+++. ..++.|=++|||+ .+++..++ .+|++++-.|..-.+.+..
T Consensus 308 ~vdp~~~~~-----~~~kI~~ikk~-~~~~~I~VdGGI~-~eti~~l~-----~aGADivVVGsaIf~a~Dp 367 (391)
T PRK13307 308 GIDEEGTEH-----AWGNIKEIKKA-GGKILVAVAGGVR-VENVEEAL-----KAGADILVVGRAITKSKDV 367 (391)
T ss_pred ccCCCcccc-----hHHHHHHHHHh-CCCCcEEEECCcC-HHHHHHHH-----HcCCCEEEEeHHHhCCCCH
Confidence 876653322 23577777766 4567889999999 78888888 5999865444444444343
No 199
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=92.60 E-value=4.5 Score=42.69 Aligned_cols=201 Identities=15% Similarity=0.097 Sum_probs=118.8
Q ss_pred HHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHcccCccEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEec
Q psy10250 14 HEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGELKTSENIYYASMTAMFAGSDFIKT 93 (387)
Q Consensus 14 ~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~~~e~i~~a~~~a~~ag~dfvKT 93 (387)
+++.+|...|||- |+=+-++++ .+++..+.+.++. .-+-+++|.- +.+|+.+ |.++|++.|=
T Consensus 123 ~QI~ea~~~GADa---vLLI~~~L~------~~~l~~l~~~a~~-lGl~~lvEvh---~~~El~~----al~~~a~iiG- 184 (454)
T PRK09427 123 YQIYLARYYGADA---ILLMLSVLD------DEQYRQLAAVAHS-LNMGVLTEVS---NEEELER----AIALGAKVIG- 184 (454)
T ss_pred HHHHHHHHcCCCc---hhHHHHhCC------HHHHHHHHHHHHH-cCCcEEEEEC---CHHHHHH----HHhCCCCEEE-
Confidence 5677888899975 444444554 2467777777764 4589999994 6677765 4667888762
Q ss_pred CCCCCCCCCCCcccccchhccccchhhhhhHHHHHHhhccccccc----CCCCCCHHHHHHHHHHhcCCCcHHHHHHHhh
Q psy10250 94 STGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEFIDLTT----LSGDDTEAVVETLTLKAIQPLSEELKEKVLH 169 (387)
Q Consensus 94 STG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ID~T~----L~~~~T~~~i~~l~~~A~~~~~~~~~~~~~~ 169 (387)
.+..+...+ -++++ ...+|+++|.-.. .+.--|.+|+..+..
T Consensus 185 --------iNnRdL~t~---~vd~~-------~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~~---------------- 230 (454)
T PRK09427 185 --------INNRNLRDL---SIDLN-------RTRELAPLIPADVIVISESGIYTHAQVRELSP---------------- 230 (454)
T ss_pred --------EeCCCCccc---eECHH-------HHHHHHhhCCCCcEEEEeCCCCCHHHHHHHHh----------------
Confidence 344445555 23333 3456677774332 355668899888632
Q ss_pred hccCCCeEEEEECCccH------HHHHHHhhhcCCCCCceEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCch
Q psy10250 170 QQANVHTAAVCVYPARV------VDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRS 243 (387)
Q Consensus 170 ~~~~~~~~aVcV~P~~v------~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~ 243 (387)
++.+|-|--..+ ...++++. ..+|||.+ ....+++.|.+.|||-|=||.-.
T Consensus 231 -----~~davLiG~~lm~~~d~~~~~~~L~~-----~~vKICGi------------t~~eda~~a~~~GaD~lGfIf~~- 287 (454)
T PRK09427 231 -----FANGFLIGSSLMAEDDLELAVRKLIL-----GENKVCGL------------TRPQDAKAAYDAGAVYGGLIFVE- 287 (454)
T ss_pred -----cCCEEEECHHHcCCCCHHHHHHHHhc-----cccccCCC------------CCHHHHHHHHhCCCCEEeeEeCC-
Confidence 245666643333 33455544 37999998 35678999999999999998422
Q ss_pred hhhcCChhHH-HHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEE
Q psy10250 244 LVLNNQWPEL-FSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 301 (387)
Q Consensus 244 ~lk~g~~~~v-~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVK 301 (387)
+| ..+| .+..+++.+..+ +-+|-+=.. - +.++|. +++.+.+.|+|+
T Consensus 288 --~S--pR~V~~~~a~~i~~~l~---v~~VgVfv~-~-~~~~i~---~i~~~~~lD~vQ 334 (454)
T PRK09427 288 --KS--PRYVSLEQAQEIIAAAP---LRYVGVFRN-A-DIEDIV---DIAKQLSLAAVQ 334 (454)
T ss_pred --CC--CCCCCHHHHHHHHHhCC---CCEEEEEeC-C-CHHHHH---HHHHHcCCCEEE
Confidence 12 2223 344555555443 112222111 1 344443 445566667665
No 200
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=92.58 E-value=2 Score=40.19 Aligned_cols=110 Identities=22% Similarity=0.212 Sum_probs=58.2
Q ss_pred HHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEc
Q psy10250 223 HEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKT 302 (387)
Q Consensus 223 ~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKT 302 (387)
..++.+.+.|+|-|.+--. ....+ ++.+++ ..+++|.-.. +.+++ +.+.+.|+|||..
T Consensus 71 ~~~~~~~~~g~d~v~l~~~-------~~~~~---~~~~~~-----~~i~~i~~v~---~~~~~----~~~~~~gad~i~~ 128 (236)
T cd04730 71 ALLEVALEEGVPVVSFSFG-------PPAEV---VERLKA-----AGIKVIPTVT---SVEEA----RKAEAAGADALVA 128 (236)
T ss_pred HHHHHHHhCCCCEEEEcCC-------CCHHH---HHHHHH-----cCCEEEEeCC---CHHHH----HHHHHcCCCEEEE
Confidence 3455667779888765221 12222 222222 1245555332 33433 3355689999985
Q ss_pred CCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 303 STGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 303 STGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
... ..+|.+........+.++.+++.. ++.|=++|||++.+++.+++ .+|++
T Consensus 129 ~~~-~~~G~~~~~~~~~~~~i~~i~~~~--~~Pvi~~GGI~~~~~v~~~l-----~~Gad 180 (236)
T cd04730 129 QGA-EAGGHRGTFDIGTFALVPEVRDAV--DIPVIAAGGIADGRGIAAAL-----ALGAD 180 (236)
T ss_pred eCc-CCCCCCCccccCHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHH-----HcCCc
Confidence 221 111111000001123455555544 46678899999999999999 48874
No 201
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=92.56 E-value=4 Score=37.97 Aligned_cols=127 Identities=11% Similarity=0.016 Sum_probs=75.3
Q ss_pred HHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCC-CcceEEEEeeccC---CC-hHHHHHHHHHHHHcCCC
Q psy10250 224 EIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGE-KIHMKTILAVGEL---KT-SENIYCASMTAMFAGSD 298 (387)
Q Consensus 224 Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~-~~~lKvIlEt~~L---~t-~e~i~~a~~ia~~aGaD 298 (387)
.++.+.+.|||-+=+-... | .+ .+.++.+.++. +..+-+.++.... .. .+.+...+.++.+.|.+
T Consensus 72 ~~~~~~~~gad~vtvh~e~-----g-~~----~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~ 141 (215)
T PRK13813 72 ICEAVFEAGAWGIIVHGFT-----G-RD----SLKAVVEAAAESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAF 141 (215)
T ss_pred HHHHHHhCCCCEEEEcCcC-----C-HH----HHHHHHHHHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 4477889999874443332 2 12 24444444432 2333334444321 11 34677888999999999
Q ss_pred EEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCH-HHHHHHHHHHHHhcCCCccCCCcceeeccchH
Q psy10250 299 FIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTF-EDSVRWIYLVLIMLGPDWLNKDLFRIGASSLL 377 (387)
Q Consensus 299 fVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~-~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~~ 377 (387)
..|.+.. .+ +.|+.+++..+..+.+ +.|||+.- ..+..++ .+|++++-.|+.-+......
T Consensus 142 g~~~~~~------~~-------~~i~~l~~~~~~~~~i-vdgGI~~~g~~~~~~~-----~aGad~iV~Gr~I~~~~d~~ 202 (215)
T PRK13813 142 GVVAPAT------RP-------ERVRYIRSRLGDELKI-ISPGIGAQGGKAADAI-----KAGADYVIVGRSIYNAADPR 202 (215)
T ss_pred eEEECCC------cc-------hhHHHHHHhcCCCcEE-EeCCcCCCCCCHHHHH-----HcCCCEEEECcccCCCCCHH
Confidence 8874431 13 3456666666766777 88999874 2355666 48998776666656554433
Q ss_pred HH
Q psy10250 378 NN 379 (387)
Q Consensus 378 ~i 379 (387)
+.
T Consensus 203 ~~ 204 (215)
T PRK13813 203 EA 204 (215)
T ss_pred HH
Confidence 33
No 202
>PRK00915 2-isopropylmalate synthase; Validated
Probab=92.53 E-value=7 Score=41.78 Aligned_cols=140 Identities=12% Similarity=0.083 Sum_probs=86.5
Q ss_pred HHHHHHH----HCCCCeeeeecCchhhh-----cCChhHHHHHHHHHHHHhCC-CcceEEEEeeccCCChHHHHHHHHHH
Q psy10250 223 HEIELLA----KQKVDEVDIVIQRSLVL-----NNQWPELFSEVKQMKEKCGE-KIHMKTILAVGELKTSENIYCASMTA 292 (387)
Q Consensus 223 ~Ea~~Ai----~~GAdEID~Vin~~~lk-----~g~~~~v~~Ei~~v~~~~~~-~~~lKvIlEt~~L~t~e~i~~a~~ia 292 (387)
..++.++ +.|++.|.+++..+-+. ....+++.+.+...++.++. +..+-+=.|-..-.+.+-+.+.++.+
T Consensus 79 ~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~ 158 (513)
T PRK00915 79 KDIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAA 158 (513)
T ss_pred HHHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHH
Confidence 3455555 67999999998876442 45678888888888777754 23344445545555667788999999
Q ss_pred HHcCCCEEEc--CCCCCCCCCChhhhHhHHHHHHHHHHHcCC----CceEeEec--cCCCHHHHHHHHHHHHHhcCCCcc
Q psy10250 293 MFAGSDFIKT--STGKEKTNATIPAGIIMCSAIKHFHKLSGK----KIGLKPAG--GISTFEDSVRWIYLVLIMLGPDWL 364 (387)
Q Consensus 293 ~~aGaDfVKT--STGf~~~gat~~~~~~m~~~v~~~~~~~~~----~~gIKasG--GIrt~~~a~~~i~l~~~~~Ga~w~ 364 (387)
.++|+|-|-= ..| .++|+.+..+++ .+++.+++ .+++..== |--+.+ ++.-+ ++|++|+
T Consensus 159 ~~~Ga~~i~l~DTvG----~~~P~~~~~~i~---~l~~~~~~~~~v~l~~H~HND~GlAvAN-slaAv-----~aGa~~V 225 (513)
T PRK00915 159 IDAGATTINIPDTVG----YTTPEEFGELIK---TLRERVPNIDKAIISVHCHNDLGLAVAN-SLAAV-----EAGARQV 225 (513)
T ss_pred HHcCCCEEEEccCCC----CCCHHHHHHHHH---HHHHhCCCcccceEEEEecCCCCHHHHH-HHHHH-----HhCCCEE
Confidence 9999997643 445 367877665544 44555553 34443311 222222 22223 5899887
Q ss_pred CCCcceeeccc
Q psy10250 365 NKDLFRIGASS 375 (387)
Q Consensus 365 ~~~~~RIGtSs 375 (387)
+...+=||-.+
T Consensus 226 d~Tv~GlGERa 236 (513)
T PRK00915 226 ECTINGIGERA 236 (513)
T ss_pred EEEeecccccc
Confidence 76666666543
No 203
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=92.53 E-value=3.2 Score=46.39 Aligned_cols=127 Identities=13% Similarity=0.115 Sum_probs=77.5
Q ss_pred HHHHHHHHCCCCeeeeecCchhh----hc---------------CChhHHHHHHHHHHHHhCCC--cceEEEEee---cc
Q psy10250 223 HEIELLAKQKVDEVDIVIQRSLV----LN---------------NQWPELFSEVKQMKEKCGEK--IHMKTILAV---GE 278 (387)
Q Consensus 223 ~Ea~~Ai~~GAdEID~Vin~~~l----k~---------------g~~~~v~~Ei~~v~~~~~~~--~~lKvIlEt---~~ 278 (387)
.-|+.|.+.|.|-||+=.--|+| +| ++...+.+=+++|++++++. +-+|+=.+- +-
T Consensus 555 ~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g 634 (765)
T PRK08255 555 AAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGG 634 (765)
T ss_pred HHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCC
Confidence 34678888999999985442222 11 12344556667788877643 445554321 12
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChh--hhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHH
Q psy10250 279 LKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIP--AGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 353 (387)
Q Consensus 279 L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~--~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~ 353 (387)
+ +.++-...++.+.++|+|||--|.|.......+. ... .....+.+++.+ ++.|=++|+|+|.+++..++.
T Consensus 635 ~-~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~-~~~~~~~ik~~~--~~pv~~~G~i~~~~~a~~~l~ 707 (765)
T PRK08255 635 N-TPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMY-QTPFADRIRNEA--GIATIAVGAISEADHVNSIIA 707 (765)
T ss_pred C-CHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccc-cHHHHHHHHHHc--CCEEEEeCCCCCHHHHHHHHH
Confidence 3 3556667788889999999998887422111100 000 012334455554 466888999999999999995
No 204
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=92.48 E-value=4.8 Score=37.87 Aligned_cols=64 Identities=17% Similarity=0.139 Sum_probs=42.8
Q ss_pred HHHHHHHHHHcCCCEEEcCCCCCC----CCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcC
Q psy10250 285 IYCASMTAMFAGSDFIKTSTGKEK----TNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG 360 (387)
Q Consensus 285 i~~a~~ia~~aGaDfVKTSTGf~~----~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~G 360 (387)
....++.+.+.|+|+|= -|+... .|... +-++.+++.+ .+.|=++|||++.+++...+. ..|
T Consensus 155 ~~~~~~~~~~~G~d~i~-i~~i~~~g~~~g~~~-------~~~~~i~~~~--~ipvia~GGi~s~~di~~~l~----~~g 220 (232)
T TIGR03572 155 PVEWAREAEQLGAGEIL-LNSIDRDGTMKGYDL-------ELIKTVSDAV--SIPVIALGGAGSLDDLVEVAL----EAG 220 (232)
T ss_pred HHHHHHHHHHcCCCEEE-EeCCCccCCcCCCCH-------HHHHHHHhhC--CCCEEEECCCCCHHHHHHHHH----HcC
Confidence 34667788899999874 333322 23333 3445555544 477999999999999999553 578
Q ss_pred CC
Q psy10250 361 PD 362 (387)
Q Consensus 361 a~ 362 (387)
++
T Consensus 221 ad 222 (232)
T TIGR03572 221 AS 222 (232)
T ss_pred CC
Confidence 73
No 205
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=92.45 E-value=16 Score=39.91 Aligned_cols=198 Identities=16% Similarity=0.096 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHcCCCEEecCCCCCCCCCCCcccccchhccccchhhhhhHHHHHHhhcccccccCCC-----------
Q psy10250 73 SENIYYASMTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEFIDLTTLSG----------- 141 (387)
Q Consensus 73 ~e~i~~a~~~a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ID~T~L~~----------- 141 (387)
.+++...+....++|.+-|-.. +|+|-....++ +. ++-.+.++++.+.+..|.|..
T Consensus 25 t~d~l~ia~~l~~~G~~~iE~~-----ggatfd~~~rf-l~-------edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~ 91 (592)
T PRK09282 25 TEDMLPIAEKLDKVGFWSLEVW-----GGATFDVCIRY-LN-------EDPWERLRKLKKALPNTPLQMLLRGQNLVGYR 91 (592)
T ss_pred HHHHHHHHHHHHHcCCCEEEec-----CCccchhhccc-CC-------ccHHHHHHHHHHhCCCCEEEEEeccccccccc
Confidence 4556667777889999999972 34543333332 11 111223344444433332211
Q ss_pred CCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEecCCCCC-CCCHHH
Q psy10250 142 DDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPSG-QYLLET 220 (387)
Q Consensus 142 ~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G-~~~~e~ 220 (387)
.-..+-++.+++.|.. +....-.++.+.++++..+...+-.. ..+..+... ++|=.+ .++.+.
T Consensus 92 ~ypd~vv~~~v~~A~~--------------~Gvd~irif~~lnd~~n~~~~i~~ak-~~G~~v~~~-i~~t~~p~~t~~~ 155 (592)
T PRK09282 92 HYPDDVVEKFVEKAAE--------------NGIDIFRIFDALNDVRNMEVAIKAAK-KAGAHVQGT-ISYTTSPVHTIEK 155 (592)
T ss_pred cccchhhHHHHHHHHH--------------CCCCEEEEEEecChHHHHHHHHHHHH-HcCCEEEEE-EEeccCCCCCHHH
Confidence 1133456677777772 13455677888887776665553210 134444444 344222 366777
Q ss_pred HHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEE
Q psy10250 221 RLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 300 (387)
Q Consensus 221 K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfV 300 (387)
=+.-++++.+.|||.|-+.=-.|.+ ....+++=++++++..+ +.|+...=+|...-...+..|+++|+|+|
T Consensus 156 ~~~~a~~l~~~Gad~I~i~Dt~G~~---~P~~~~~lv~~lk~~~~------~pi~~H~Hnt~Gla~An~laAv~aGad~v 226 (592)
T PRK09282 156 YVELAKELEEMGCDSICIKDMAGLL---TPYAAYELVKALKEEVD------LPVQLHSHCTSGLAPMTYLKAVEAGVDII 226 (592)
T ss_pred HHHHHHHHHHcCCCEEEECCcCCCc---CHHHHHHHHHHHHHhCC------CeEEEEEcCCCCcHHHHHHHHHHhCCCEE
Confidence 7888999999999988555223432 35667777777776542 34565555444434445677999999999
Q ss_pred EcCC-CCCC
Q psy10250 301 KTST-GKEK 308 (387)
Q Consensus 301 KTST-Gf~~ 308 (387)
-+|. ||+.
T Consensus 227 D~ai~g~g~ 235 (592)
T PRK09282 227 DTAISPLAF 235 (592)
T ss_pred EeeccccCC
Confidence 9976 4543
No 206
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=92.43 E-value=9.3 Score=41.70 Aligned_cols=195 Identities=14% Similarity=0.159 Sum_probs=126.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeeee----cc--hhHHhcCChhHHHHHHHHHHHHcccCccEEEEEe----ccCCC-CHH
Q psy10250 6 QYLLETRLHEIELLAKQKVDEVDIV----IQ--RSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILA----VGELK-TSE 74 (387)
Q Consensus 6 ~~~~~~K~~E~~~a~~~GA~EiD~V----in--~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlE----t~~L~-~~e 74 (387)
..+++-|+.-++..-+.|.+.|++- ++ +..+...+|+.+ +.+++..++ .++-+++= .||-. .++
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~l----r~l~~~~~~-~~lqml~Rg~n~vg~~~ypdd 97 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERL----RELKKAMPN-TPQQMLLRGQNLLGYRHYADD 97 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHH----HHHHHhCCC-CeEEEEecCcceeccccCcHH
Confidence 4678889999999999999999993 34 334566666554 455555543 45666553 23322 234
Q ss_pred HHHHHHHHHHHcCCCEEecCCCCCCCCCCCcccccchhccccchhhhhhHHHHHHhhcc----cccccCCCCCCHHHHHH
Q psy10250 75 NIYYASMTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEF----IDLTTLSGDDTEAVVET 150 (387)
Q Consensus 75 ~i~~a~~~a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----ID~T~L~~~~T~~~i~~ 150 (387)
-+..-++.|.+.|+|.+......+. + +.++.-..++++.-.. |-+|. .|..|.+.+.+
T Consensus 98 vv~~~v~~a~~~Gid~~rifd~lnd--------~---------~~~~~ai~~ak~~G~~~~~~i~yt~-~p~~~~~~~~~ 159 (593)
T PRK14040 98 VVERFVERAVKNGMDVFRVFDAMND--------P---------RNLETALKAVRKVGAHAQGTLSYTT-SPVHTLQTWVD 159 (593)
T ss_pred HHHHHHHHHHhcCCCEEEEeeeCCc--------H---------HHHHHHHHHHHHcCCeEEEEEEEee-CCccCHHHHHH
Confidence 5667788999999999888753321 0 1224444455543322 33443 67788899999
Q ss_pred HHHHhcCCCcHHHHHHHhhhccCCCeEEEEEC-------CccHHHHHHHhhhcCCCCCceEEEEecCCCCCCCCHHHHHH
Q psy10250 151 LTLKAIQPLSEELKEKVLHQQANVHTAAVCVY-------PARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLH 223 (387)
Q Consensus 151 l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~-------P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~~e~K~~ 223 (387)
+++++. +.|...+|+. |..+....+.|+.. .++. ++| |...+...=++
T Consensus 160 ~a~~l~----------------~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~---~~~p-----i~~-H~Hnt~GlA~A 214 (593)
T PRK14040 160 LAKQLE----------------DMGVDSLCIKDMAGLLKPYAAYELVSRIKKR---VDVP-----LHL-HCHATTGLSTA 214 (593)
T ss_pred HHHHHH----------------HcCCCEEEECCCCCCcCHHHHHHHHHHHHHh---cCCe-----EEE-EECCCCchHHH
Confidence 999888 6788888874 66666656666531 2222 244 45555666677
Q ss_pred HHHHHHHCCCCeeeeecC-chhhhcCC
Q psy10250 224 EIELLAKQKVDEVDIVIQ-RSLVLNNQ 249 (387)
Q Consensus 224 Ea~~Ai~~GAdEID~Vin-~~~lk~g~ 249 (387)
-.-.|++.||+-||.-+| +|. ..|+
T Consensus 215 n~laAieAGa~~vD~ai~glG~-~~Gn 240 (593)
T PRK14040 215 TLLKAIEAGIDGVDTAISSMSM-TYGH 240 (593)
T ss_pred HHHHHHHcCCCEEEeccccccc-cccc
Confidence 788899999999999998 444 3444
No 207
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=92.12 E-value=1.9 Score=42.28 Aligned_cols=87 Identities=24% Similarity=0.253 Sum_probs=57.4
Q ss_pred HHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcC--C
Q psy10250 255 SEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSG--K 332 (387)
Q Consensus 255 ~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~--~ 332 (387)
.-++.+++..++ ..|+.+|+.- .+|..+| ..+|+|||.-.+ .+++. ++...+..+ .
T Consensus 169 ~~v~~~r~~~~~--~~~I~vev~t---~eea~~A----~~~gaD~I~ld~------~~~e~-------l~~~v~~i~~~~ 226 (269)
T cd01568 169 EAVKRARAAAPF--EKKIEVEVET---LEEAEEA----LEAGADIIMLDN------MSPEE-------LKEAVKLLKGLP 226 (269)
T ss_pred HHHHHHHHhCCC--CCeEEEecCC---HHHHHHH----HHcCCCEEEECC------CCHHH-------HHHHHHHhccCC
Confidence 456777776653 3688998864 4566544 468999997544 23442 232222222 3
Q ss_pred CceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccch
Q psy10250 333 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL 376 (387)
Q Consensus 333 ~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~ 376 (387)
++.|=++|||. .+.+..|. ..|+ +.|.+|+.
T Consensus 227 ~i~i~asGGIt-~~ni~~~a-----~~Ga-------d~Isvgal 257 (269)
T cd01568 227 RVLLEASGGIT-LENIRAYA-----ETGV-------DVISTGAL 257 (269)
T ss_pred CeEEEEECCCC-HHHHHHHH-----HcCC-------CEEEEcHH
Confidence 78899999996 78888888 5898 57777654
No 208
>PRK02227 hypothetical protein; Provisional
Probab=92.10 E-value=0.66 Score=44.83 Aligned_cols=75 Identities=20% Similarity=0.235 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCCCeeeee-cchhHHhcCChhHHHHHHHHHHHHcccCccEEE-EEeccCCCCHHHHHHHHHHHHHcCCCE
Q psy10250 13 LHEIELLAKQKVDEVDIV-IQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKT-ILAVGELKTSENIYYASMTAMFAGSDF 90 (387)
Q Consensus 13 ~~E~~~a~~~GA~EiD~V-in~~~lk~g~~~~v~~ei~~v~~~~~~~~~~Kv-IlEt~~L~~~e~i~~a~~~a~~ag~df 90 (387)
..|++.|++.|||=||+= .+-|+ +..+.-++.+||.+.+ +++.++-. |=+.++ .+..+..++.-+...|+||
T Consensus 10 ~eEA~~Al~~GaDiIDvK~P~~Ga-LGA~~p~vir~Iv~~~---~~~~pvSAtiGD~p~--~p~~~~~aa~~~a~~GvDy 83 (238)
T PRK02227 10 LEEALEALAGGADIIDVKNPKEGS-LGANFPWVIREIVAAV---PGRKPVSATIGDVPY--KPGTISLAALGAAATGADY 83 (238)
T ss_pred HHHHHHHHhcCCCEEEccCCCCCC-CCCCCHHHHHHHHHHh---CCCCCceeeccCCCC--CchHHHHHHHHHHhhCCCE
Confidence 579999999999999986 34443 3456777777766665 33333333 333333 3467888888888899999
Q ss_pred Eec
Q psy10250 91 IKT 93 (387)
Q Consensus 91 vKT 93 (387)
||-
T Consensus 84 VKv 86 (238)
T PRK02227 84 VKV 86 (238)
T ss_pred EEE
Confidence 994
No 209
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=92.01 E-value=5.5 Score=35.48 Aligned_cols=61 Identities=20% Similarity=0.274 Sum_probs=37.6
Q ss_pred HHHHHcCCCEEEcCCCCCC---CCC-ChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 290 MTAMFAGSDFIKTSTGKEK---TNA-TIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 290 ~ia~~aGaDfVKTSTGf~~---~ga-t~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
+.+.+.|+|||.-++-|.. .+. .+.. .+.++.+++. ..+.|=+.|||. .+++..++ .+|++
T Consensus 109 ~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~pv~a~GGi~-~~~i~~~~-----~~Ga~ 173 (196)
T cd00564 109 LRAEELGADYVGFGPVFPTPTKPGAGPPLG----LELLREIAEL--VEIPVVAIGGIT-PENAAEVL-----AAGAD 173 (196)
T ss_pred HHHhhcCCCEEEECCccCCCCCCCCCCCCC----HHHHHHHHHh--CCCCEEEECCCC-HHHHHHHH-----HcCCC
Confidence 3456789999976654421 111 1111 1344444443 457788999995 68888888 48884
No 210
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=91.93 E-value=1.9 Score=41.86 Aligned_cols=124 Identities=14% Similarity=0.100 Sum_probs=76.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCc---ceEEEEeeccCCChHHHHHHH
Q psy10250 213 SGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKI---HMKTILAVGELKTSENIYCAS 289 (387)
Q Consensus 213 ~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~---~lKvIlEt~~L~t~e~i~~a~ 289 (387)
.|..+.+.=+.-++.|.+.+-. |+| -+. --||.+++..|+.+..+++.. . -++|+= |- +++ . ..|
T Consensus 70 aG~~ta~eAv~~a~lare~~~~--~~i-KlE--Vi~d~~~Llpd~~~tv~aa~~-L~~~Gf~vlp---yc-~dd-~-~~a 137 (248)
T cd04728 70 AGCRTAEEAVRTARLAREALGT--DWI-KLE--VIGDDKTLLPDPIETLKAAEI-LVKEGFTVLP---YC-TDD-P-VLA 137 (248)
T ss_pred CCCCCHHHHHHHHHHHHHHhCC--CeE-EEE--EecCccccccCHHHHHHHHHH-HHHCCCEEEE---Ee-CCC-H-HHH
Confidence 5778888778888888887622 211 000 135666677777777766643 1 355551 33 222 1 245
Q ss_pred HHHHHcCCCEEEc--CC-CCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 290 MTAMFAGSDFIKT--ST-GKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 290 ~ia~~aGaDfVKT--ST-Gf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
+...++|+++|=+ +. |-+.+-.+++ -|+.+++. .++.|=+-|||.|.+||...+ ++|++
T Consensus 138 r~l~~~G~~~vmPlg~pIGsg~Gi~~~~-------~I~~I~e~--~~vpVI~egGI~tpeda~~Am-----elGAd 199 (248)
T cd04728 138 KRLEDAGCAAVMPLGSPIGSGQGLLNPY-------NLRIIIER--ADVPVIVDAGIGTPSDAAQAM-----ELGAD 199 (248)
T ss_pred HHHHHcCCCEeCCCCcCCCCCCCCCCHH-------HHHHHHHh--CCCcEEEeCCCCCHHHHHHHH-----HcCCC
Confidence 6677789999954 11 2111223443 44555554 357788899999999999999 69984
No 211
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=91.92 E-value=1.5 Score=43.32 Aligned_cols=89 Identities=21% Similarity=0.194 Sum_probs=59.6
Q ss_pred CChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHH
Q psy10250 248 NQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFH 327 (387)
Q Consensus 248 g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~ 327 (387)
|.++.+.+-++++++.+++ .|+.+|.. +.|+.. .++++|+|.|-= .+.+++..+. .++.++
T Consensus 170 g~~~~i~~av~~~r~~~~~---~kIeVEv~---tleea~----ea~~~GaDiI~l------Dn~~~e~l~~---~v~~l~ 230 (277)
T TIGR01334 170 NDNFDWGGAIGRLKQTAPE---RKITVEAD---TIEQAL----TVLQASPDILQL------DKFTPQQLHH---LHERLK 230 (277)
T ss_pred CCcccHHHHHHHHHHhCCC---CCEEEECC---CHHHHH----HHHHcCcCEEEE------CCCCHHHHHH---HHHHHh
Confidence 4445566777777765543 68999987 445443 367899999962 2456764433 333332
Q ss_pred HHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 328 KLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 328 ~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
...+++.+=+|||| +.+.+.+|. ..|+|
T Consensus 231 -~~~~~~~leasGGI-~~~ni~~ya-----~~GvD 258 (277)
T TIGR01334 231 -FFDHIPTLAAAGGI-NPENIADYI-----EAGID 258 (277)
T ss_pred -ccCCCEEEEEECCC-CHHHHHHHH-----hcCCC
Confidence 23568889999999 578888888 58984
No 212
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=91.80 E-value=14 Score=36.45 Aligned_cols=86 Identities=23% Similarity=0.182 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHcCCCEEE----------------cCCCCC-------CCCCChhhhHhHHHHHHHHHHHcCCCceEeE
Q psy10250 282 SENIYCASMTAMFAGSDFIK----------------TSTGKE-------KTNATIPAGIIMCSAIKHFHKLSGKKIGLKP 338 (387)
Q Consensus 282 ~e~i~~a~~ia~~aGaDfVK----------------TSTGf~-------~~gat~~~~~~m~~~v~~~~~~~~~~~gIKa 338 (387)
.|+-...+..|.+.|.|+|= -|.||- -.|+..+.....-+.|+.+|+.++..+ +
T Consensus 133 ~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv---~ 209 (265)
T COG0159 133 PEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPV---L 209 (265)
T ss_pred hHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCe---E
Confidence 35555566667777887652 233662 234433322223355666666654333 2
Q ss_pred ec-cCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccchHHHHHH
Q psy10250 339 AG-GISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQ 382 (387)
Q Consensus 339 sG-GIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~~~il~~ 382 (387)
.| ||++.+|+.++.. . +| ..-+| |..++++.+
T Consensus 210 vGFGIs~~e~~~~v~~-----~-AD-----GVIVG-SAiV~~i~~ 242 (265)
T COG0159 210 VGFGISSPEQAAQVAE-----A-AD-----GVIVG-SAIVKIIEE 242 (265)
T ss_pred EecCcCCHHHHHHHHH-----h-CC-----eEEEc-HHHHHHHHh
Confidence 36 9999999999995 3 32 23444 556666655
No 213
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=91.62 E-value=2.1 Score=43.47 Aligned_cols=132 Identities=13% Similarity=0.097 Sum_probs=81.0
Q ss_pred HHHHHHHHcCCCeeeeecchhHHhcCCh----hHHHHHHHHHHHHcccCccEEEEEec-cCC-------------CCHHH
Q psy10250 14 HEIELLAKQKVDEVDIVIQRSLVLNNQW----PELFSEVKQMKEKCEEKIHMKTILAV-GEL-------------KTSEN 75 (387)
Q Consensus 14 ~E~~~a~~~GA~EiD~Vin~~~lk~g~~----~~v~~ei~~v~~~~~~~~~~KvIlEt-~~L-------------~~~e~ 75 (387)
--++++++.|||-+=+-++++ +.+. +.-.+.+.+|.+.|+. .-+-+++|. .|- ..++.
T Consensus 110 ~sve~a~~~GAdAVk~lv~~~---~d~~~~~~~~~~~~l~rv~~ec~~-~giPlllE~l~y~~~~~~~~~~~~a~~~p~~ 185 (340)
T PRK12858 110 WSVRRIKEAGADAVKLLLYYR---PDEDDAINDRKHAFVERVGAECRA-NDIPFFLEPLTYDGKGSDKKAEEFAKVKPEK 185 (340)
T ss_pred ccHHHHHHcCCCEEEEEEEeC---CCcchHHHHHHHHHHHHHHHHHHH-cCCceEEEEeccCCCccccccccccccCHHH
Confidence 347889999999999999998 3212 3445568888888874 235567772 121 13578
Q ss_pred HHHHHHHHHH--cCCCEEecCCCCCCCCCCCcccccch-hccccchhhhhhHHHHHHhhcccccc--cCCCCCCHHHHHH
Q psy10250 76 IYYASMTAMF--AGSDFIKTSTGKEKTNATIPADLTRQ-FEAVDLSRLKNKKSLLLKIIEFIDLT--TLSGDDTEAVVET 150 (387)
Q Consensus 76 i~~a~~~a~~--ag~dfvKTSTG~~~~gat~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ID~T--~L~~~~T~~~i~~ 150 (387)
+..+++.+.+ .|+|++|+.-=.. +.+.-..- .+.+ -.+ +.-.+.++++....+.. .|..-.+.+++.+
T Consensus 186 V~~a~r~~~~~elGaDvlKve~p~~-----~~~veg~~~~~~~-~~~-~~~~~~f~~~~~a~~~P~vvlsgG~~~~~f~~ 258 (340)
T PRK12858 186 VIKTMEEFSKPRYGVDVLKVEVPVD-----MKFVEGFDGFEEA-YTQ-EEAFKLFREQSDATDLPFIFLSAGVSPELFRR 258 (340)
T ss_pred HHHHHHHHhhhccCCeEEEeeCCCC-----ccccccccccccc-ccH-HHHHHHHHHHHhhCCCCEEEECCCCCHHHHHH
Confidence 8999999995 9999999842110 00000000 0000 011 22223445555554444 4677778899999
Q ss_pred HHHHhc
Q psy10250 151 LTLKAI 156 (387)
Q Consensus 151 l~~~A~ 156 (387)
.++.|.
T Consensus 259 ~l~~A~ 264 (340)
T PRK12858 259 TLEFAC 264 (340)
T ss_pred HHHHHH
Confidence 998888
No 214
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=91.57 E-value=9.7 Score=40.43 Aligned_cols=232 Identities=11% Similarity=0.104 Sum_probs=146.2
Q ss_pred CHHHHHHHHHHHHHcCCCeeee----ecc--hhHHhcCChhHHHHHHHHHHHHcccCccEEEEEe----ccCCC-CHHHH
Q psy10250 8 LLETRLHEIELLAKQKVDEVDI----VIQ--RSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILA----VGELK-TSENI 76 (387)
Q Consensus 8 ~~~~K~~E~~~a~~~GA~EiD~----Vin--~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlE----t~~L~-~~e~i 76 (387)
+++-.+.-++..-+.|..-|++ .++ ++.++..+|+.++ ++++..++ .++.+++= .||-. .++-+
T Consensus 33 ~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr----~~r~~~~n-t~lqmLlRG~n~vgy~~ypddvv 107 (468)
T PRK12581 33 SIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLR----TLKKGLPN-TRLQMLLRGQNLLGYRHYADDIV 107 (468)
T ss_pred CHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHH----HHHHhCCC-CceeeeeccccccCccCCcchHH
Confidence 4566666677777789999999 678 8888899998764 55555554 45555543 23332 24667
Q ss_pred HHHHHHHHHcCCCEEecCCCCCCCCCCCcccccchhccccchhhhhhHHHHHH----hhcccccccCCCCCCHHHHHHHH
Q psy10250 77 YYASMTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLK----IIEFIDLTTLSGDDTEAVVETLT 152 (387)
Q Consensus 77 ~~a~~~a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~ID~T~L~~~~T~~~i~~l~ 152 (387)
+..++.+.+.|+|.+...+... +...| +.-..++++ ..-.|-+|. +|..|.+-..+++
T Consensus 108 ~~fv~~a~~~Gidi~Rifd~ln-------d~~n~----------~~ai~~ak~~G~~~~~~i~yt~-sp~~t~~y~~~~a 169 (468)
T PRK12581 108 DKFISLSAQNGIDVFRIFDALN-------DPRNI----------QQALRAVKKTGKEAQLCIAYTT-SPVHTLNYYLSLV 169 (468)
T ss_pred HHHHHHHHHCCCCEEEEcccCC-------CHHHH----------HHHHHHHHHcCCEEEEEEEEEe-CCcCcHHHHHHHH
Confidence 7788999999999999877432 11112 222223333 123455655 7788888888888
Q ss_pred HHhcCCCcHHHHHHHhhhccCCCeEEEEEC-------CccHHHHHHHhhhcCCCCCceEEEEecCCCCCCCCHHHHHHHH
Q psy10250 153 LKAIQPLSEELKEKVLHQQANVHTAAVCVY-------PARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEI 225 (387)
Q Consensus 153 ~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~-------P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~~e~K~~Ea 225 (387)
+++. ++|+..||+. |..+....+.|+.. .++. ++| |+..+...=++-+
T Consensus 170 ~~l~----------------~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~---~~~p-----i~~-H~Hnt~GlA~An~ 224 (468)
T PRK12581 170 KELV----------------EMGADSICIKDMAGILTPKAAKELVSGIKAM---TNLP-----LIV-HTHATSGISQMTY 224 (468)
T ss_pred HHHH----------------HcCCCEEEECCCCCCcCHHHHHHHHHHHHhc---cCCe-----EEE-EeCCCCccHHHHH
Confidence 8888 6888999984 66565555555531 2332 244 5556666677788
Q ss_pred HHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCE
Q psy10250 226 ELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDF 299 (387)
Q Consensus 226 ~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDf 299 (387)
-.|++.||+-||.-++- +-.|--+.-.+++....+..+ .+|+ + +.+.+..+++...+.--.|
T Consensus 225 laAieAGad~vD~ai~g--~g~gagN~~tE~lv~~L~~~g--------~~tg-i-Dl~~L~~~a~~~~~vr~~y 286 (468)
T PRK12581 225 LAAVEAGADRIDTALSP--FSEGTSQPATESMYLALKEAG--------YDIT-L-DETLLEQAANHLRQARQKY 286 (468)
T ss_pred HHHHHcCCCEEEeeccc--cCCCcCChhHHHHHHHHHhcC--------CCCC-c-CHHHHHHHHHHHHHHHHHh
Confidence 89999999999999983 222333555566555444322 1332 4 3455666665555444444
No 215
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=91.45 E-value=0.94 Score=53.64 Aligned_cols=95 Identities=21% Similarity=0.181 Sum_probs=58.9
Q ss_pred HHHHHHHhCC-CcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHh---------HHHHHHHH
Q psy10250 257 VKQMKEKCGE-KIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGII---------MCSAIKHF 326 (387)
Q Consensus 257 i~~v~~~~~~-~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~---------m~~~v~~~ 326 (387)
|..++++.+. ++-+|+.-+.+.= + |. .-+.+||||||--|-+-+..||++....- +.+.-+-+
T Consensus 987 I~~Lk~~~~~~~I~VKl~a~~~vg-~---ia---~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L 1059 (1485)
T PRK11750 987 IFDLKQVNPKALVSVKLVSEPGVG-T---IA---TGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQAL 1059 (1485)
T ss_pred HHHHHHhCCCCcEEEEEccCCCcc-H---HH---hChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHH
Confidence 4444444332 3567777765542 2 21 23567999999766666667777653221 11111222
Q ss_pred H-HHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCc
Q psy10250 327 H-KLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 363 (387)
Q Consensus 327 ~-~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w 363 (387)
. ....+++.+=++||+||..|+...+ .|||||
T Consensus 1060 ~~~glR~rv~l~a~Ggl~t~~Dv~kA~-----aLGAd~ 1092 (1485)
T PRK11750 1060 VANGLRHKIRLQVDGGLKTGLDVIKAA-----ILGAES 1092 (1485)
T ss_pred HhcCCCcceEEEEcCCcCCHHHHHHHH-----HcCCcc
Confidence 2 2235689999999999999999888 599964
No 216
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.38 E-value=1.9 Score=43.00 Aligned_cols=86 Identities=16% Similarity=0.244 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCC
Q psy10250 254 FSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKK 333 (387)
Q Consensus 254 ~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~ 333 (387)
.+-++++++..+ ..|+.+|+.-| +|..+ ++++|||-|-= .+.+|+. ++...+..+++
T Consensus 193 ~~av~~~r~~~~---~~kIeVEvetl---eea~e----A~~aGaDiImL------Dnmspe~-------l~~av~~~~~~ 249 (294)
T PRK06978 193 GAALDAAFALNA---GVPVQIEVETL---AQLET----ALAHGAQSVLL------DNFTLDM-------MREAVRVTAGR 249 (294)
T ss_pred HHHHHHHHHhCC---CCcEEEEcCCH---HHHHH----HHHcCCCEEEE------CCCCHHH-------HHHHHHhhcCC
Confidence 344445554333 36899999866 44533 57899999962 3456764 33333344568
Q ss_pred ceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccc
Q psy10250 334 IGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS 375 (387)
Q Consensus 334 ~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs 375 (387)
+.+=+|||| |++.+.+|- ..|.| .|-+|+
T Consensus 250 ~~lEaSGGI-t~~ni~~yA-----~tGVD-------~IS~ga 278 (294)
T PRK06978 250 AVLEVSGGV-NFDTVRAFA-----ETGVD-------RISIGA 278 (294)
T ss_pred eEEEEECCC-CHHHHHHHH-----hcCCC-------EEEeCc
Confidence 899999999 588888888 58985 665554
No 217
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=91.36 E-value=10 Score=37.08 Aligned_cols=141 Identities=18% Similarity=0.092 Sum_probs=85.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEE--e--eccCCChHHHHHH
Q psy10250 213 SGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTIL--A--VGELKTSENIYCA 288 (387)
Q Consensus 213 ~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIl--E--t~~L~t~e~i~~a 288 (387)
....+.+.+....+.+.+.|++.|-+....+. .+.+.+-++..++. + ++|.. - .+.-.+++...+.
T Consensus 85 ~~~~p~~~~~~di~~~~~~g~~~iri~~~~~~-----~~~~~~~i~~ak~~---G--~~v~~~i~~~~~~~~~~~~~~~~ 154 (275)
T cd07937 85 YRHYPDDVVELFVEKAAKNGIDIFRIFDALND-----VRNLEVAIKAVKKA---G--KHVEGAICYTGSPVHTLEYYVKL 154 (275)
T ss_pred ccCCCcHHHHHHHHHHHHcCCCEEEEeecCCh-----HHHHHHHHHHHHHC---C--CeEEEEEEecCCCCCCHHHHHHH
Confidence 34466778888999999999999888877654 33333333333321 1 34432 2 2223367888899
Q ss_pred HHHHHHcCCCEE--EcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEe--ccCCCHHHHHHHHHHHHHhcCCCcc
Q psy10250 289 SMTAMFAGSDFI--KTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPA--GGISTFEDSVRWIYLVLIMLGPDWL 364 (387)
Q Consensus 289 ~~ia~~aGaDfV--KTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKas--GGIrt~~~a~~~i~l~~~~~Ga~w~ 364 (387)
++.+.++|+|-| +=+.|. .+|+.+..++..+ ++..+-.+++..= -|-- ...++.-+ ++|++|+
T Consensus 155 ~~~~~~~Ga~~i~l~DT~G~----~~P~~v~~lv~~l---~~~~~~~l~~H~Hnd~GlA-~aN~laA~-----~aGa~~v 221 (275)
T cd07937 155 AKELEDMGADSICIKDMAGL----LTPYAAYELVKAL---KKEVGLPIHLHTHDTSGLA-VATYLAAA-----EAGVDIV 221 (275)
T ss_pred HHHHHHcCCCEEEEcCCCCC----CCHHHHHHHHHHH---HHhCCCeEEEEecCCCChH-HHHHHHHH-----HhCCCEE
Confidence 999999999965 445553 6787766554444 4444433433321 1111 12223333 5899998
Q ss_pred CCCcceeeccch
Q psy10250 365 NKDLFRIGASSL 376 (387)
Q Consensus 365 ~~~~~RIGtSs~ 376 (387)
+....=+|-+++
T Consensus 222 d~sv~GlG~~aG 233 (275)
T cd07937 222 DTAISPLSGGTS 233 (275)
T ss_pred EEecccccCCcC
Confidence 888877877643
No 218
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.19 E-value=7.6 Score=36.61 Aligned_cols=151 Identities=15% Similarity=0.119 Sum_probs=86.9
Q ss_pred CCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEEC---CccHHHHHHHhhhcCCCCCceEEEEecCCCCCCCCHH
Q psy10250 143 DTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVY---PARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLE 219 (387)
Q Consensus 143 ~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~---P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~~e 219 (387)
.+.++..+.++... +-|+..+=|. |.+....+++-+..+ +--+-.+||.
T Consensus 13 ~~~~~a~~ia~al~----------------~gGi~~iEit~~tp~a~~~I~~l~~~~~-~~~vGAGTVl----------- 64 (201)
T PRK06015 13 DDVEHAVPLARALA----------------AGGLPAIEITLRTPAALDAIRAVAAEVE-EAIVGAGTIL----------- 64 (201)
T ss_pred CCHHHHHHHHHHHH----------------HCCCCEEEEeCCCccHHHHHHHHHHHCC-CCEEeeEeCc-----------
Confidence 47788888887777 4566666554 555555443322210 1123333442
Q ss_pred HHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCE
Q psy10250 220 TRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDF 299 (387)
Q Consensus 220 ~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDf 299 (387)
-..+++.|++.||+=| +..+ + ..|+.+.....+ +..=-+-+ |+.||. .|.++|+|+
T Consensus 65 -~~e~a~~ai~aGA~Fi---vSP~------~---~~~vi~~a~~~~------i~~iPG~~-TptEi~----~A~~~Ga~~ 120 (201)
T PRK06015 65 -NAKQFEDAAKAGSRFI---VSPG------T---TQELLAAANDSD------VPLLPGAA-TPSEVM----ALREEGYTV 120 (201)
T ss_pred -CHHHHHHHHHcCCCEE---ECCC------C---CHHHHHHHHHcC------CCEeCCCC-CHHHHH----HHHHCCCCE
Confidence 3458899999999853 3222 1 123333322221 22223456 778884 468999999
Q ss_pred EEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCC
Q psy10250 300 IKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGP 361 (387)
Q Consensus 300 VKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga 361 (387)
||---+-.-+| +. -++.++.-. +.+.+-++|||.. +++..|+ .+|+
T Consensus 121 vK~FPa~~~GG--~~-------yikal~~pl-p~~~l~ptGGV~~-~n~~~~l-----~ag~ 166 (201)
T PRK06015 121 LKFFPAEQAGG--AA-------FLKALSSPL-AGTFFCPTGGISL-KNARDYL-----SLPN 166 (201)
T ss_pred EEECCchhhCC--HH-------HHHHHHhhC-CCCcEEecCCCCH-HHHHHHH-----hCCC
Confidence 99654311112 32 345555445 4688999999976 6888888 4776
No 219
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=91.15 E-value=0.85 Score=44.48 Aligned_cols=176 Identities=18% Similarity=0.171 Sum_probs=93.5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEecCCCCCCCCH
Q psy10250 139 LSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLL 218 (387)
Q Consensus 139 L~~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~~ 218 (387)
++++..+.++-+..+++= -..-+|++-|.|-.=--+.|..- ... ++=|.-.-.-
T Consensus 64 i~~~~d~~~~a~~y~~~G-----------------A~aiSVlTe~~~F~Gs~~dL~~v--------~~~-~~~PvL~KDF 117 (254)
T PF00218_consen 64 IREDFDPAEIAKAYEEAG-----------------AAAISVLTEPKFFGGSLEDLRAV--------RKA-VDLPVLRKDF 117 (254)
T ss_dssp SBSS-SHHHHHHHHHHTT------------------SEEEEE--SCCCHHHHHHHHHH--------HHH-SSS-EEEES-
T ss_pred cCccCCHHHHHHHHHhcC-----------------CCEEEEECCCCCCCCCHHHHHHH--------HHH-hCCCcccccC
Confidence 555666677766655552 25567777776544333333310 001 1222222222
Q ss_pred HHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCC
Q psy10250 219 ETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSD 298 (387)
Q Consensus 219 e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaD 298 (387)
-.=-.++.+|...|||-|=+...+ ++. +++..+.+.|+. .-+-+++|+. +.+++.+ |.++|++
T Consensus 118 Iid~~QI~eA~~~GADaVLLI~~~---L~~------~~l~~l~~~a~~-lGle~lVEVh---~~~El~~----al~~~a~ 180 (254)
T PF00218_consen 118 IIDPYQIYEARAAGADAVLLIAAI---LSD------DQLEELLELAHS-LGLEALVEVH---NEEELER----ALEAGAD 180 (254)
T ss_dssp --SHHHHHHHHHTT-SEEEEEGGG---SGH------HHHHHHHHHHHH-TT-EEEEEES---SHHHHHH----HHHTT-S
T ss_pred CCCHHHHHHHHHcCCCEeehhHHh---CCH------HHHHHHHHHHHH-cCCCeEEEEC---CHHHHHH----HHHcCCC
Confidence 334578889999999985444332 321 234555555544 4589999998 4566755 4578999
Q ss_pred EEEcCC-CCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeecc
Q psy10250 299 FIKTST-GKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 374 (387)
Q Consensus 299 fVKTST-Gf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtS 374 (387)
.|=-.. .. .|++ +-++.-..+....+..+-+=+.+||+|.+|+..|. ..|++ .+.||+|
T Consensus 181 iiGINnRdL----~tf~---vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~-----~~G~d-----avLVGe~ 240 (254)
T PF00218_consen 181 IIGINNRDL----KTFE---VDLNRTEELAPLIPKDVIVISESGIKTPEDARRLA-----RAGAD-----AVLVGEA 240 (254)
T ss_dssp EEEEESBCT----TTCC---BHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHC-----TTT-S-----EEEESHH
T ss_pred EEEEeCccc----cCcc---cChHHHHHHHhhCccceeEEeecCCCCHHHHHHHH-----HCCCC-----EEEECHH
Confidence 863221 11 2222 11123333444556666555678999999999998 58875 7899987
No 220
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=91.09 E-value=1 Score=43.37 Aligned_cols=76 Identities=14% Similarity=0.181 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCCeeeee-cchhHHhcCChhHHHHHHHHHHHHcccCccEEEEE-eccCCCCHHHHHHHHHHHHHcCCC
Q psy10250 12 RLHEIELLAKQKVDEVDIV-IQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTIL-AVGELKTSENIYYASMTAMFAGSD 89 (387)
Q Consensus 12 K~~E~~~a~~~GA~EiD~V-in~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIl-Et~~L~~~e~i~~a~~~a~~ag~d 89 (387)
-..|++.|++.|||-||+= .+-|+|= ....++.+||.+. +++..++-.-+ +.++- +..+..+..-+...|+|
T Consensus 9 ~~~EA~~a~~~gaDiID~K~P~~GaLG-A~~~~vi~~i~~~---~~~~~pvSAtiGDlp~~--p~~~~~aa~~~a~~Gvd 82 (235)
T PF04476_consen 9 NVEEAEEALAGGADIIDLKNPAEGALG-ALFPWVIREIVAA---VPGRKPVSATIGDLPMK--PGTASLAALGAAATGVD 82 (235)
T ss_pred CHHHHHHHHhCCCCEEEccCCCCCCCC-CCCHHHHHHHHHH---cCCCCceEEEecCCCCC--chHHHHHHHHHHhcCCC
Confidence 3689999999999999986 4444443 3456666565554 45434554444 55543 46677777666778999
Q ss_pred EEec
Q psy10250 90 FIKT 93 (387)
Q Consensus 90 fvKT 93 (387)
|||-
T Consensus 83 yvKv 86 (235)
T PF04476_consen 83 YVKV 86 (235)
T ss_pred EEEE
Confidence 9994
No 221
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=90.98 E-value=11 Score=35.67 Aligned_cols=120 Identities=18% Similarity=0.216 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHc
Q psy10250 216 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFA 295 (387)
Q Consensus 216 ~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~a 295 (387)
...+.-+.|++...+.+-+ +++-+..-..| +++++.+...+. ++-+ |... +.+|. .+|.++
T Consensus 61 ~~~~~mi~~a~~l~~~~~~---i~iKIP~T~~G--------l~A~~~L~~~Gi--~v~~-T~vf-s~~Qa----~~Aa~a 121 (213)
T TIGR00875 61 LDAEGMVEEAKELAKLAPN---IVVKIPMTSEG--------LKAVKILKKEGI--KTNV-TLVF-SAAQA----LLAAKA 121 (213)
T ss_pred CCHHHHHHHHHHHHHhCCC---eEEEeCCCHHH--------HHHHHHHHHCCC--ceeE-EEec-CHHHH----HHHHHc
Confidence 4588888888888887632 55544433344 455554443322 2222 2234 44444 446778
Q ss_pred CCCEEEcCCCCCC-CCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCc
Q psy10250 296 GSDFIKTSTGKEK-TNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 363 (387)
Q Consensus 296 GaDfVKTSTGf~~-~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w 363 (387)
|++||--=-|.-. .| .+..-++++++.+.+..+.+.+|.+| .+|+.+|+.++. .+|++.
T Consensus 122 Ga~yispyvgRi~d~g---~dg~~~v~~~~~~~~~~~~~tkIlaA-S~r~~~~v~~~~-----~~G~d~ 181 (213)
T TIGR00875 122 GATYVSPFVGRLDDIG---GDGMKLIEEVKTIFENHAPDTEVIAA-SVRHPRHVLEAA-----LIGADI 181 (213)
T ss_pred CCCEEEeecchHHHcC---CCHHHHHHHHHHHHHHcCCCCEEEEe-ccCCHHHHHHHH-----HcCCCE
Confidence 9999976666421 11 12223345566666667888999886 799999999998 589863
No 222
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.97 E-value=0.74 Score=42.80 Aligned_cols=78 Identities=21% Similarity=0.232 Sum_probs=53.9
Q ss_pred HHHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHcccCccE-EEEEeccCCCCHHHHHHHHHHHHHcCCCE
Q psy10250 12 RLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHM-KTILAVGELKTSENIYYASMTAMFAGSDF 90 (387)
Q Consensus 12 K~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~~~~~-KvIlEt~~L~~~e~i~~a~~~a~~ag~df 90 (387)
-..|+.+|++-|||-||+==+-.--+.-++-++.+|+++++. +...+ -.+=..+|= +-.+..|+.=+.-+|+||
T Consensus 9 n~eEA~eAieGGAdIiDVKNP~EGSLGANFPWvIr~i~Ev~p---~d~~vSAT~GDvpYK--PGT~slAalGaav~GaDY 83 (235)
T COG1891 9 NREEAIEAIEGGADIIDVKNPAEGSLGANFPWVIREIREVVP---EDQEVSATVGDVPYK--PGTASLAALGAAVAGADY 83 (235)
T ss_pred CHHHHHHHhhCCCceEeccCcccCcccCCChHHHHHHHHhCc---cceeeeeeecCCCCC--CchHHHHHHHhHhhCCce
Confidence 467999999999999998644433445588999999988863 22222 222334442 355667777777889999
Q ss_pred EecC
Q psy10250 91 IKTS 94 (387)
Q Consensus 91 vKTS 94 (387)
||-.
T Consensus 84 iKVG 87 (235)
T COG1891 84 IKVG 87 (235)
T ss_pred EEEe
Confidence 9953
No 223
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=90.95 E-value=1.9 Score=42.63 Aligned_cols=86 Identities=24% Similarity=0.272 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcC
Q psy10250 252 ELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSG 331 (387)
Q Consensus 252 ~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~ 331 (387)
.+.+-+++.++.++. ..|+=+|+.-| +|. +-|+++|||-|- -.+.+|+. |.++++++ ...
T Consensus 173 ~i~~Av~~aR~~~~~--~~kIEVEvesl---e~~----~eAl~agaDiIm------LDNm~~e~---~~~av~~l--~~~ 232 (280)
T COG0157 173 SITEAVRRARAAAPF--TKKIEVEVESL---EEA----EEALEAGADIIM------LDNMSPEE---LKEAVKLL--GLA 232 (280)
T ss_pred cHHHHHHHHHHhCCC--CceEEEEcCCH---HHH----HHHHHcCCCEEE------ecCCCHHH---HHHHHHHh--ccC
Confidence 356677778777764 56788888755 555 346899999995 24566764 33455554 357
Q ss_pred CCceEeEeccCCCHHHHHHHHHHHHHhcCCCc
Q psy10250 332 KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 363 (387)
Q Consensus 332 ~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w 363 (387)
+++-+-+|||| |++....|- ..|.|.
T Consensus 233 ~~~~lEaSGgI-t~~ni~~yA-----~tGVD~ 258 (280)
T COG0157 233 GRALLEASGGI-TLENIREYA-----ETGVDV 258 (280)
T ss_pred CceEEEEeCCC-CHHHHHHHh-----hcCCCE
Confidence 79999999999 678888888 588854
No 224
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=90.95 E-value=11 Score=37.05 Aligned_cols=140 Identities=11% Similarity=0.060 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHc
Q psy10250 216 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFA 295 (387)
Q Consensus 216 ~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~a 295 (387)
...+.-..+++++.+.|.+-|++=+ + ++.+...+-++++++.+++ +++.+....--+.++-.+.++...+.
T Consensus 133 ~~~~~~~~~~~~~~~~Gf~~iKik~--g----~~~~~d~~~v~~lr~~~g~---~~l~vD~n~~~~~~~A~~~~~~l~~~ 203 (316)
T cd03319 133 DTPEAMAAAAKKAAKRGFPLLKIKL--G----GDLEDDIERIRAIREAAPD---ARLRVDANQGWTPEEAVELLRELAEL 203 (316)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEe--C----CChhhHHHHHHHHHHhCCC---CeEEEeCCCCcCHHHHHHHHHHHHhc
Confidence 3456566888999999999988843 2 3445566777888877762 57778775533567777777888888
Q ss_pred CCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeec-c
Q psy10250 296 GSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGA-S 374 (387)
Q Consensus 296 GaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGt-S 374 (387)
|.+||.-..-. ... +..+.+++. .++.|-+-+.+.+.+++..++. .-++++++++..++|. +
T Consensus 204 ~l~~iEeP~~~----~d~-------~~~~~L~~~--~~ipIa~~E~~~~~~~~~~~~~----~~~~d~v~~~~~~~GGi~ 266 (316)
T cd03319 204 GVELIEQPVPA----GDD-------DGLAYLRDK--SPLPIMADESCFSAADAARLAG----GGAYDGINIKLMKTGGLT 266 (316)
T ss_pred CCCEEECCCCC----CCH-------HHHHHHHhc--CCCCEEEeCCCCCHHHHHHHHh----cCCCCEEEEeccccCCHH
Confidence 99999754421 112 234445443 3467878888899999999985 4678888999999964 5
Q ss_pred chHHHHH
Q psy10250 375 SLLNNIL 381 (387)
Q Consensus 375 s~~~il~ 381 (387)
...++..
T Consensus 267 ~~~~~~~ 273 (316)
T cd03319 267 EALRIAD 273 (316)
T ss_pred HHHHHHH
Confidence 5555543
No 225
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=90.87 E-value=1.8 Score=42.13 Aligned_cols=118 Identities=18% Similarity=0.207 Sum_probs=72.8
Q ss_pred HHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEE
Q psy10250 221 RLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 300 (387)
Q Consensus 221 K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfV 300 (387)
--.++.+|...|||-| .+.... ++ .++++.+.+.+.. .-+-+++|+.-. +++.+ +.++|++.|
T Consensus 113 d~~QI~ea~~~GADav--LLI~~~-L~------~~~l~~l~~~a~~-lGle~LVEVh~~---~El~~----a~~~ga~ii 175 (247)
T PRK13957 113 DEIQIREARAFGASAI--LLIVRI-LT------PSQIKSFLKHASS-LGMDVLVEVHTE---DEAKL----ALDCGAEII 175 (247)
T ss_pred CHHHHHHHHHcCCCEE--EeEHhh-CC------HHHHHHHHHHHHH-cCCceEEEECCH---HHHHH----HHhCCCCEE
Confidence 3467788888999987 333332 22 2256666666654 458999999844 56644 677899987
Q ss_pred EcCC-CCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEe-ccCCCHHHHHHHHHHHHHhcCCCccCCCcceeecc
Q psy10250 301 KTST-GKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPA-GGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 374 (387)
Q Consensus 301 KTST-Gf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKas-GGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtS 374 (387)
=-.. .. .|++ +-.+....+....+..+ +++| +||+|.+|+..+.. . + +.+.||+|
T Consensus 176 GINnRdL----~t~~---vd~~~~~~L~~~ip~~~-~~IsESGI~t~~d~~~l~~-----~-~-----davLvG~~ 232 (247)
T PRK13957 176 GINTRDL----DTFQ---IHQNLVEEVAAFLPPNI-VKVGESGIESRSDLDKFRK-----L-V-----DAALIGTY 232 (247)
T ss_pred EEeCCCC----ccce---ECHHHHHHHHhhCCCCc-EEEEcCCCCCHHHHHHHHH-----h-C-----CEEEECHH
Confidence 3221 11 1221 11123333445566554 5665 89999999999873 2 3 35899997
No 226
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=90.84 E-value=6.9 Score=37.63 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=67.3
Q ss_pred HHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhC-CCcce---------------EEEEeeccCCChHHH
Q psy10250 222 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCG-EKIHM---------------KTILAVGELKTSENI 285 (387)
Q Consensus 222 ~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~-~~~~l---------------KvIlEt~~L~t~e~i 285 (387)
...++.+++.||+-+ ++....+.+ .+.+ +++.+.++ +...+ +|-+....-.+.+..
T Consensus 86 ~~d~~~~~~~Ga~~v--ivgt~~~~~--p~~~----~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~ 157 (254)
T TIGR00735 86 IEDVDKLLRAGADKV--SINTAAVKN--PELI----YELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDA 157 (254)
T ss_pred HHHHHHHHHcCCCEE--EEChhHhhC--hHHH----HHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCH
Confidence 345677778898884 677777663 3322 23344443 21110 222222222233445
Q ss_pred HHHHHHHHHcCCCEEEcCCCCCC----CCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHH
Q psy10250 286 YCASMTAMFAGSDFIKTSTGKEK----TNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 353 (387)
Q Consensus 286 ~~a~~ia~~aGaDfVKTSTGf~~----~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~ 353 (387)
...++.+.++|+|+|-- |+... .|...+ -++.+++.+ .+.|=++|||++.+++..++.
T Consensus 158 ~~~~~~l~~~G~~~iiv-t~i~~~g~~~g~~~~-------~~~~i~~~~--~ipvia~GGi~s~~di~~~~~ 219 (254)
T TIGR00735 158 VEWAKEVEKLGAGEILL-TSMDKDGTKSGYDLE-------LTKAVSEAV--KIPVIASGGAGKPEHFYEAFT 219 (254)
T ss_pred HHHHHHHHHcCCCEEEE-eCcCcccCCCCCCHH-------HHHHHHHhC--CCCEEEeCCCCCHHHHHHHHH
Confidence 66778889999998744 33332 233332 345555554 578899999999999999994
No 227
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=90.82 E-value=3.9 Score=38.26 Aligned_cols=139 Identities=18% Similarity=0.169 Sum_probs=74.2
Q ss_pred ccHHHHHHHhhhcCCCCCceEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHH
Q psy10250 184 ARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEK 263 (387)
Q Consensus 184 ~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~ 263 (387)
..++..++..+. .++++... |+-. ...+++.+++.||+- ++++...+.+ .+.+ +++.+.
T Consensus 61 ~~~~~i~~i~~~----~~~pv~~~--GGI~-------~~ed~~~~~~~Ga~~--vilg~~~l~~--~~~l----~ei~~~ 119 (233)
T PRK00748 61 VNLELIEAIVKA----VDIPVQVG--GGIR-------SLETVEALLDAGVSR--VIIGTAAVKN--PELV----KEACKK 119 (233)
T ss_pred ccHHHHHHHHHH----CCCCEEEc--CCcC-------CHHHHHHHHHcCCCE--EEECchHHhC--HHHH----HHHHHH
Confidence 455666655443 34555333 3332 234567778889887 4667666653 3333 333333
Q ss_pred hCCC--cceEE---EEeeccC-C-ChHHHHHHHHHHHHcCCC-EEEcCC---CCCCCCCChhhhHhHHHHHHHHHHHcCC
Q psy10250 264 CGEK--IHMKT---ILAVGEL-K-TSENIYCASMTAMFAGSD-FIKTST---GKEKTNATIPAGIIMCSAIKHFHKLSGK 332 (387)
Q Consensus 264 ~~~~--~~lKv---IlEt~~L-~-t~e~i~~a~~ia~~aGaD-fVKTST---Gf~~~gat~~~~~~m~~~v~~~~~~~~~ 332 (387)
.++. ..+.+ .+.+.-+ . ++.......+...+.|++ ++=|+. |.. .|+..+ -++.+++.++
T Consensus 120 ~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~-~G~d~~-------~i~~l~~~~~- 190 (233)
T PRK00748 120 FPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTL-SGPNVE-------ATRELAAAVP- 190 (233)
T ss_pred hCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCc-CCCCHH-------HHHHHHHhCC-
Confidence 3221 11221 1222111 0 111223456667888999 455533 322 344453 4455555543
Q ss_pred CceEeEeccCCCHHHHHHHHH
Q psy10250 333 KIGLKPAGGISTFEDSVRWIY 353 (387)
Q Consensus 333 ~~gIKasGGIrt~~~a~~~i~ 353 (387)
+.|=++|||+|.+++..++.
T Consensus 191 -ipvia~GGi~~~~di~~~~~ 210 (233)
T PRK00748 191 -IPVIASGGVSSLDDIKALKG 210 (233)
T ss_pred -CCEEEeCCCCCHHHHHHHHH
Confidence 77888999999999999994
No 228
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=90.48 E-value=1.6 Score=43.77 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=55.0
Q ss_pred HHHHHHHHHcCCCEEEcCCCCC--------C--------CCCChh-hhHhHHHHHHHHHHHcCC--CceEeEe------c
Q psy10250 286 YCASMTAMFAGSDFIKTSTGKE--------K--------TNATIP-AGIIMCSAIKHFHKLSGK--KIGLKPA------G 340 (387)
Q Consensus 286 ~~a~~ia~~aGaDfVKTSTGf~--------~--------~gat~~-~~~~m~~~v~~~~~~~~~--~~gIKas------G 340 (387)
..|++.|.++|.|.|+-..|-+ + .|.+++ ..+...+-|+.+++.+|. .++||.+ |
T Consensus 157 ~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~ 236 (336)
T cd02932 157 VAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEG 236 (336)
T ss_pred HHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCC
Confidence 4578889999999998876421 1 133333 444556677777888864 5999988 5
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCccC
Q psy10250 341 GISTFEDSVRWIYLVLIMLGPDWLN 365 (387)
Q Consensus 341 GIrt~~~a~~~i~l~~~~~Ga~w~~ 365 (387)
|. +.+++..++...+ .+|.+|++
T Consensus 237 g~-~~~e~~~ia~~Le-~~gvd~ie 259 (336)
T cd02932 237 GW-DLEDSVELAKALK-ELGVDLID 259 (336)
T ss_pred CC-CHHHHHHHHHHHH-HcCCCEEE
Confidence 55 6888988887655 46999986
No 229
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=90.30 E-value=11 Score=35.58 Aligned_cols=62 Identities=18% Similarity=0.157 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCCEEEcCCCCC----CCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCC
Q psy10250 286 YCASMTAMFAGSDFIKTSTGKE----KTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGP 361 (387)
Q Consensus 286 ~~a~~ia~~aGaDfVKTSTGf~----~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga 361 (387)
....+.+.+.|++.|- -|+-. ..|... +.++.+.+.+ .+.|=++|||+|++++..+. .+|+
T Consensus 152 ~~~~~~~~~~G~~~i~-~~~~~~~g~~~g~~~-------~~i~~i~~~~--~iPvia~GGI~~~~di~~~~-----~~Ga 216 (241)
T PRK13585 152 VEAAKRFEELGAGSIL-FTNVDVEGLLEGVNT-------EPVKELVDSV--DIPVIASGGVTTLDDLRALK-----EAGA 216 (241)
T ss_pred HHHHHHHHHcCCCEEE-EEeecCCCCcCCCCH-------HHHHHHHHhC--CCCEEEeCCCCCHHHHHHHH-----HcCC
Confidence 3455666889999663 22211 123333 2445555544 47899999999999999987 5787
Q ss_pred C
Q psy10250 362 D 362 (387)
Q Consensus 362 ~ 362 (387)
+
T Consensus 217 ~ 217 (241)
T PRK13585 217 A 217 (241)
T ss_pred C
Confidence 3
No 230
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=90.17 E-value=27 Score=37.54 Aligned_cols=203 Identities=12% Similarity=0.049 Sum_probs=111.2
Q ss_pred CCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEE-CCccHHHHHH---HhhhcCCC-CCceEEEEecCCCCCC
Q psy10250 141 GDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCV-YPARVVDVIK---VLDRENAR-DDVKVASVAAGFPSGQ 215 (387)
Q Consensus 141 ~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV-~P~~v~~a~~---~L~~~~~~-~~v~v~tVvigFP~G~ 215 (387)
-..|.++..++++.-. +.||..+-+ +|..-+.-.+ .+... + .+.++++..-..+.+.
T Consensus 22 ~~~s~e~Kl~ia~~L~----------------~~Gvd~IEvG~p~as~~d~~~~~~i~~~--~l~~~~i~~~~~~~~~~i 83 (524)
T PRK12344 22 ISFSVEDKLRIARKLD----------------ELGVDYIEGGWPGSNPKDTEFFKRAKEL--KLKHAKLAAFGSTRRAGV 83 (524)
T ss_pred CCCCHHHHHHHHHHHH----------------HcCCCEEEEcCCcCChhHHHHHHHHHHh--CCCCcEEEEEeeccccCC
Confidence 3456777777666654 567777777 5543333111 12111 1 2456665521222332
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeeecCchh-----hhcCChhHHHHHHHHHHHHhCCCcceEEEE--e---eccCCChHHH
Q psy10250 216 YLLETRLHEIELLAKQKVDEVDIVIQRSL-----VLNNQWPELFSEVKQMKEKCGEKIHMKTIL--A---VGELKTSENI 285 (387)
Q Consensus 216 ~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~-----lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIl--E---t~~L~t~e~i 285 (387)
....- ...+.+++.|++.|-+++..+- .+....+++.+.+...++.+.. .-.+|-+ | .++-.+++-.
T Consensus 84 ~~~~d--~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~-~G~~v~~~~e~~~Da~r~d~~~l 160 (524)
T PRK12344 84 SAEED--PNLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKA-HGREVIFDAEHFFDGYKANPEYA 160 (524)
T ss_pred CcccH--HHHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHH-cCCeEEEccccccccccCCHHHH
Confidence 21111 2345677889999999977642 3334567777777777777654 2345544 3 2223356667
Q ss_pred HHHHHHHHHcCCCEEE--cCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCc
Q psy10250 286 YCASMTAMFAGSDFIK--TSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 363 (387)
Q Consensus 286 ~~a~~ia~~aGaDfVK--TSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w 363 (387)
.+.++.+.++|+|.|- -++|. ++|+.+..+++ .+++.++-.+++..=- =+-+..|-.+..+ ++|++|
T Consensus 161 ~~~~~~~~~~Gad~i~l~DTvG~----~~P~~v~~li~---~l~~~~~v~i~~H~HN-D~GlA~ANslaAi---~aGa~~ 229 (524)
T PRK12344 161 LATLKAAAEAGADWVVLCDTNGG----TLPHEVAEIVA---EVRAAPGVPLGIHAHN-DSGCAVANSLAAV---EAGARQ 229 (524)
T ss_pred HHHHHHHHhCCCCeEEEccCCCC----cCHHHHHHHHH---HHHHhcCCeEEEEECC-CCChHHHHHHHHH---HhCCCE
Confidence 7889999999999764 34453 67876665544 4444443334443321 0112222222221 589988
Q ss_pred cCCCcceeeccc
Q psy10250 364 LNKDLFRIGASS 375 (387)
Q Consensus 364 ~~~~~~RIGtSs 375 (387)
++...+=||-.+
T Consensus 230 Vd~Tl~GlGERa 241 (524)
T PRK12344 230 VQGTINGYGERC 241 (524)
T ss_pred EEEecccccccc
Confidence 876666666543
No 231
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=90.09 E-value=10 Score=39.54 Aligned_cols=178 Identities=20% Similarity=0.195 Sum_probs=110.3
Q ss_pred CCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEEC-----CccHHHHHHHhhhcCCCCCceEEEEecCCCCC-CC
Q psy10250 143 DTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVY-----PARVVDVIKVLDRENARDDVKVASVAAGFPSG-QY 216 (387)
Q Consensus 143 ~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~-----P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G-~~ 216 (387)
-+.+-|+++++++. ++|..-+=|. |.-++.+.+..++. +-.+-.+ ++|-.. .+
T Consensus 95 yaDDvVe~Fv~ka~----------------~nGidvfRiFDAlND~RNl~~ai~a~kk~----G~h~q~~-i~YT~sPvH 153 (472)
T COG5016 95 YADDVVEKFVEKAA----------------ENGIDVFRIFDALNDVRNLKTAIKAAKKH----GAHVQGT-ISYTTSPVH 153 (472)
T ss_pred CchHHHHHHHHHHH----------------hcCCcEEEechhccchhHHHHHHHHHHhc----CceeEEE-EEeccCCcc
Confidence 35677889999998 4444433332 45566666666653 4455555 477533 67
Q ss_pred CHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHH-HHHHc
Q psy10250 217 LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASM-TAMFA 295 (387)
Q Consensus 217 ~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~-ia~~a 295 (387)
+.+.=+.-+++.++.|+|-|-+= |.+-++ .....++-++++++.++ +.|.+-|..-+. +..+|. .|.+|
T Consensus 154 t~e~yv~~akel~~~g~DSIciK-DmaGll--tP~~ayelVk~iK~~~~----~pv~lHtH~TsG---~a~m~ylkAvEA 223 (472)
T COG5016 154 TLEYYVELAKELLEMGVDSICIK-DMAGLL--TPYEAYELVKAIKKELP----VPVELHTHATSG---MAEMTYLKAVEA 223 (472)
T ss_pred cHHHHHHHHHHHHHcCCCEEEee-cccccC--ChHHHHHHHHHHHHhcC----CeeEEecccccc---hHHHHHHHHHHh
Confidence 78888888999999999998654 444344 25666777888887654 677777776532 444554 58999
Q ss_pred CCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhc
Q psy10250 296 GSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIML 359 (387)
Q Consensus 296 GaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~ 359 (387)
|+|+|-|+--=-+.|.+-+....|+.+++. ++...|+ -+.-++++..++.-+++.-
T Consensus 224 GvD~iDTAisp~S~gtsqP~tEtmv~aL~g----t~yDtgl----d~~~l~~~~~yf~~vrkkY 279 (472)
T COG5016 224 GVDGIDTAISPLSGGTSQPATETMVAALRG----TGYDTGL----DLELLEEIAEYFREVRKKY 279 (472)
T ss_pred CcchhhhhhccccCCCCCCcHHHHHHHhcC----CCCCccc----cHHHHHHHHHHHHHHHHHH
Confidence 999999965322344444444555544432 3444443 3445555555555555544
No 232
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=90.07 E-value=9.6 Score=36.84 Aligned_cols=118 Identities=19% Similarity=0.229 Sum_probs=66.1
Q ss_pred HHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCc---ce----------EEEEeeccCCChHHHHHHH
Q psy10250 223 HEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKI---HM----------KTILAVGELKTSENIYCAS 289 (387)
Q Consensus 223 ~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~---~l----------KvIlEt~~L~t~e~i~~a~ 289 (387)
.+++.+++.|++-+ ++|...+.+ .+ -++++.+..+... .+ +|.+.-..-.++.......
T Consensus 87 ~d~~~l~~~G~~~v--vigs~~~~~--~~----~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~ 158 (258)
T PRK01033 87 EQAKKIFSLGVEKV--SINTAALED--PD----LITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELA 158 (258)
T ss_pred HHHHHHHHCCCCEE--EEChHHhcC--HH----HHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHH
Confidence 35777778899885 457555443 22 2344444443211 12 2232211000111233456
Q ss_pred HHHHHcCCCEEE----cCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 290 MTAMFAGSDFIK----TSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 290 ~ia~~aGaDfVK----TSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
+.+.+.|++.+= +.-|.. .|...+ .++.+++. ..+.|=+||||++.+++..++. ..|++
T Consensus 159 ~~~~~~g~~~ii~~~i~~~G~~-~G~d~~-------~i~~~~~~--~~ipvIasGGv~s~eD~~~l~~----~~Gvd 221 (258)
T PRK01033 159 KEYEALGAGEILLNSIDRDGTM-KGYDLE-------LLKSFRNA--LKIPLIALGGAGSLDDIVEAIL----NLGAD 221 (258)
T ss_pred HHHHHcCCCEEEEEccCCCCCc-CCCCHH-------HHHHHHhh--CCCCEEEeCCCCCHHHHHHHHH----HCCCC
Confidence 777899999764 222322 344453 45555554 3578889999999999999984 47874
No 233
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=90.04 E-value=20 Score=34.96 Aligned_cols=131 Identities=15% Similarity=0.106 Sum_probs=81.2
Q ss_pred CeEEEEECCccHHHHHHHhhhcCCCCCceEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHH
Q psy10250 175 HTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELF 254 (387)
Q Consensus 175 ~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~ 254 (387)
..--++++...++.+.+.++... ..+..|..-+ -+=++ ++.+.-..-++.+.+.|++.|=++=-.|.+ ..+.++
T Consensus 97 ~~iri~~~~~~~~~~~~~i~~ak-~~G~~v~~~~-~~a~~-~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~---~P~~v~ 170 (266)
T cd07944 97 DMIRVAFHKHEFDEALPLIKAIK-EKGYEVFFNL-MAISG-YSDEELLELLELVNEIKPDVFYIVDSFGSM---YPEDIK 170 (266)
T ss_pred CEEEEecccccHHHHHHHHHHHH-HCCCeEEEEE-EeecC-CCHHHHHHHHHHHHhCCCCEEEEecCCCCC---CHHHHH
Confidence 44457788888887776664210 1244443221 22223 566777777888899999998666445543 467777
Q ss_pred HHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCC-CCCC--CCCChhh
Q psy10250 255 SEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTST-GKEK--TNATIPA 315 (387)
Q Consensus 255 ~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTST-Gf~~--~gat~~~ 315 (387)
+=++.+++..++ -+-|+...=++...=..-+..|+++|+++|-||- |+|. +++..|.
T Consensus 171 ~lv~~l~~~~~~----~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G~~aGN~~~E~ 230 (266)
T cd07944 171 RIISLLRSNLDK----DIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGMGRGAGNLPTEL 230 (266)
T ss_pred HHHHHHHHhcCC----CceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccCCCCcCcHHHHH
Confidence 777777765542 1446766554444333345679999999999987 4543 4455553
No 234
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=89.91 E-value=3.4 Score=41.46 Aligned_cols=74 Identities=12% Similarity=0.122 Sum_probs=48.7
Q ss_pred ceEEEEeeccCCChHHHHHHHHHHHH------cCCCEEEcCCC-CCCC--CCChhhhHhHHHHHHHHHHHcCCCceEeEe
Q psy10250 269 HMKTILAVGELKTSENIYCASMTAMF------AGSDFIKTSTG-KEKT--NATIPAGIIMCSAIKHFHKLSGKKIGLKPA 339 (387)
Q Consensus 269 ~lKvIlEt~~L~t~e~i~~a~~ia~~------aGaDfVKTSTG-f~~~--gat~~~~~~m~~~v~~~~~~~~~~~gIKas 339 (387)
..|+.+|+.-| ||..+ +++ +|+|.|-==.- +.+. ..+++ .++...+..++++.+=+|
T Consensus 203 ~~kIeVEv~tl---eea~e----a~~~~~~~~agaDiImLDnm~~~~~~~~~~~e-------~l~~av~~~~~~~~lEaS 268 (308)
T PLN02716 203 SMKIEVETRTL---EEVKE----VLEYLSDTKTSLTRVMLDNMVVPLENGDVDVS-------MLKEAVELINGRFETEAS 268 (308)
T ss_pred CeeEEEEECCH---HHHHH----HHHhcccccCCCCEEEeCCCcccccccCCCHH-------HHHHHHHhhCCCceEEEE
Confidence 47999999866 55544 456 89999973332 0111 11443 444444445677889999
Q ss_pred ccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 340 GGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 340 GGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
||| |.+.+.+|- ..|.|
T Consensus 269 GGI-t~~ni~~yA-----~tGVD 285 (308)
T PLN02716 269 GNV-TLDTVHKIG-----QTGVT 285 (308)
T ss_pred CCC-CHHHHHHHH-----HcCCC
Confidence 999 478888888 58985
No 235
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=89.90 E-value=20 Score=34.89 Aligned_cols=98 Identities=19% Similarity=0.132 Sum_probs=65.1
Q ss_pred cCCCCC-CCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHH
Q psy10250 209 AGFPSG-QYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYC 287 (387)
Q Consensus 209 igFP~G-~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~ 287 (387)
..|+.| ..+.+.-+.-++.+.+.|++.|=++=-.|. -....+++-++.+++..++ +-|+...=++.-.=..
T Consensus 140 ~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~---~~P~~v~~lv~~l~~~~~~-----~~l~~H~Hnd~Gla~A 211 (273)
T cd07941 140 EHFFDGYKANPEYALATLKAAAEAGADWLVLCDTNGG---TLPHEIAEIVKEVRERLPG-----VPLGIHAHNDSGLAVA 211 (273)
T ss_pred EeccccCCCCHHHHHHHHHHHHhCCCCEEEEecCCCC---CCHHHHHHHHHHHHHhCCC-----CeeEEEecCCCCcHHH
Confidence 478766 455666667788889999999855433443 3467788888888877653 3466665544433333
Q ss_pred HHHHHHHcCCCEEEcCC-CCC--CCCCChh
Q psy10250 288 ASMTAMFAGSDFIKTST-GKE--KTNATIP 314 (387)
Q Consensus 288 a~~ia~~aGaDfVKTST-Gf~--~~gat~~ 314 (387)
-+..|+++|+++|-+|- |.| .+++.++
T Consensus 212 n~laA~~aGa~~id~s~~GlGeraGn~~~e 241 (273)
T cd07941 212 NSLAAVEAGATQVQGTINGYGERCGNANLC 241 (273)
T ss_pred HHHHHHHcCCCEEEEeccccccccccccHH
Confidence 45678999999999876 343 3455554
No 236
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=89.84 E-value=34 Score=37.45 Aligned_cols=194 Identities=17% Similarity=0.082 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHcCCCEEecCCCCCCCCCCCcccccchhccccchhhhhhHHHHHHhhcccccccCCCC-----------
Q psy10250 74 ENIYYASMTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEFIDLTTLSGD----------- 142 (387)
Q Consensus 74 e~i~~a~~~a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ID~T~L~~~----------- 142 (387)
+++..++...-++|..-+-..- |||.....+ ++. |+--+.++.+.+.+-.|.|.--
T Consensus 26 ~d~~~ia~~~d~~g~~siE~~g-----Gatfd~~~r----fl~----edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~ 92 (596)
T PRK14042 26 EDMLPICNKMDDVGFWAMEVWG-----GATFDACLR----FLK----EDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRN 92 (596)
T ss_pred HHHHHHHHHHHhcCCCEEEeeC-----Ccccceeec----ccC----CCHHHHHHHHHHhCCCCceEEEecccccccccc
Confidence 4455677666778888877543 344332222 222 2222334444444444443322
Q ss_pred CCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEecCCCCC-CCCHHHH
Q psy10250 143 DTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPSG-QYLLETR 221 (387)
Q Consensus 143 ~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G-~~~~e~K 221 (387)
...+-|+.+++.|.. +...+.-|+-..++++.....++... ..+..+-+. |.|-.. .++.+.=
T Consensus 93 ~~d~vv~~~v~~a~~--------------~Gidv~Rifd~lnd~~n~~~~i~~~k-~~G~~~~~~-i~yt~sp~~t~e~~ 156 (596)
T PRK14042 93 YADDVVRAFVKLAVN--------------NGVDVFRVFDALNDARNLKVAIDAIK-SHKKHAQGA-ICYTTSPVHTLDNF 156 (596)
T ss_pred CChHHHHHHHHHHHH--------------cCCCEEEEcccCcchHHHHHHHHHHH-HcCCEEEEE-EEecCCCCCCHHHH
Confidence 255667778998872 14667778888888887766553211 134455555 467544 4455666
Q ss_pred HHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEE
Q psy10250 222 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 301 (387)
Q Consensus 222 ~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVK 301 (387)
+.-++++.+.||+.|-+.=-.|.+ ....+++-++++++..+ +-|+...=+|.-.-...+..|+++|+|.|-
T Consensus 157 ~~~ak~l~~~Gad~I~IkDtaG~l---~P~~v~~lv~alk~~~~------ipi~~H~Hnt~Gla~an~laAieaGad~iD 227 (596)
T PRK14042 157 LELGKKLAEMGCDSIAIKDMAGLL---TPTVTVELYAGLKQATG------LPVHLHSHSTSGLASICHYEAVLAGCNHID 227 (596)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCC---CHHHHHHHHHHHHhhcC------CEEEEEeCCCCCcHHHHHHHHHHhCCCEEE
Confidence 666888889999998666334443 36778888888887542 234444343433333445679999999999
Q ss_pred cCCC
Q psy10250 302 TSTG 305 (387)
Q Consensus 302 TSTG 305 (387)
||-+
T Consensus 228 ~ai~ 231 (596)
T PRK14042 228 TAIS 231 (596)
T ss_pred eccc
Confidence 9873
No 237
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=89.83 E-value=9 Score=36.21 Aligned_cols=116 Identities=13% Similarity=0.048 Sum_probs=69.5
Q ss_pred HHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCC------------C------hHHHHH
Q psy10250 226 ELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELK------------T------SENIYC 287 (387)
Q Consensus 226 ~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~------------t------~e~i~~ 287 (387)
+.+.+.|.+-|++..+. +.-.+|++++.+.. -|++.--.+.+. + .+.+.+
T Consensus 21 ~~~~e~G~~~vEl~~~~--------~~~~~~l~~~l~~~----gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (254)
T TIGR03234 21 AAAAQAGFTGVEYLFPY--------DWDAEALKARLAAA----GLEQVLFNLPAGDWAAGERGIACLPGREEEFREGVAL 88 (254)
T ss_pred HHHHHcCCCEEEecCCc--------cCCHHHHHHHHHHc----CCeEEEEeCCCCccccCCCccccCCccHHHHHHHHHH
Confidence 44457799999986432 22244555554422 355554332220 1 145567
Q ss_pred HHHHHHHcCCCEEEcCCCCCCCCCChhh-hHhHHHHHHH---HHHHcCCCceEeEe-------ccCCCHHHHHHHHH
Q psy10250 288 ASMTAMFAGSDFIKTSTGKEKTNATIPA-GIIMCSAIKH---FHKLSGKKIGLKPA-------GGISTFEDSVRWIY 353 (387)
Q Consensus 288 a~~ia~~aGaDfVKTSTGf~~~gat~~~-~~~m~~~v~~---~~~~~~~~~gIKas-------GGIrt~~~a~~~i~ 353 (387)
+.++|.+.|+..|-+.+|+.+.+.+.+. -..+++.++. +.+..|-++.+..- -.+.|.+++..++.
T Consensus 89 ~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~~~~l~t~~~~~~li~ 165 (254)
T TIGR03234 89 AIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMPGFFLTTTEQALAVID 165 (254)
T ss_pred HHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCCCChhcCHHHHHHHHH
Confidence 8889999999999998987654433332 2333344444 34444556777752 24789999999996
No 238
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=89.70 E-value=32 Score=36.88 Aligned_cols=164 Identities=15% Similarity=0.152 Sum_probs=97.7
Q ss_pred HHHHHHHhhhcCCCCCceEEEEe--cCCC-CCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHH
Q psy10250 186 VVDVIKVLDRENARDDVKVASVA--AGFP-SGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKE 262 (387)
Q Consensus 186 v~~a~~~L~~~~~~~~v~v~tVv--igFP-~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~ 262 (387)
+...++.+. ++++.... -+.| .+..+-++....++.|++.|.|-+-+....+.+ +....=++.+++
T Consensus 67 lr~lr~~~~------nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv-----~nl~~ai~~vk~ 135 (499)
T PRK12330 67 LRTFRKLMP------NSRLQMLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDP-----RNLEHAMKAVKK 135 (499)
T ss_pred HHHHHHhCC------CCeEEEEEcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCChH-----HHHHHHHHHHHH
Confidence 566666554 45565541 0122 455556688889999999999999888877655 444444555554
Q ss_pred HhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCE--EEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCC--CceEeE
Q psy10250 263 KCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDF--IKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGK--KIGLKP 338 (387)
Q Consensus 263 ~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDf--VKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~--~~gIKa 338 (387)
+ +......+-.-.+...|.+...+.++.+.++|+|- ||-++|. .+|+.+..++.++ ++.++. .+++..
T Consensus 136 a-g~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~IkDtaGl----l~P~~~~~LV~~L---k~~~~~~ipI~~H~ 207 (499)
T PRK12330 136 V-GKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICIKDMAAL----LKPQPAYDIVKGI---KEACGEDTRINLHC 207 (499)
T ss_pred h-CCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEeCCCccC----CCHHHHHHHHHHH---HHhCCCCCeEEEEe
Confidence 3 32111222222233557788888899999999995 5667775 6787766655444 455542 343333
Q ss_pred e--ccCCCHHHHHHHHHHHHHhcCCCccCCCcceeecc
Q psy10250 339 A--GGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 374 (387)
Q Consensus 339 s--GGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtS 374 (387)
= -|.-... .++-+ ++|+++++....=+|-.
T Consensus 208 Hnt~GlA~An-~laAi-----eAGad~vDtai~Glg~~ 239 (499)
T PRK12330 208 HSTTGVTLVS-LMKAI-----EAGVDVVDTAISSMSLG 239 (499)
T ss_pred CCCCCcHHHH-HHHHH-----HcCCCEEEeeccccccc
Confidence 1 1222222 23333 69998887666666544
No 239
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=89.64 E-value=2.9 Score=46.37 Aligned_cols=118 Identities=17% Similarity=0.177 Sum_probs=76.5
Q ss_pred HHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEE
Q psy10250 222 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 301 (387)
Q Consensus 222 ~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVK 301 (387)
-.++.+|...|||-|=+ +-.+++ .++++.+.+.+.. .-|-+++|+. +.+++.+ |.++|++.|=
T Consensus 123 ~~QI~ea~~~GADavLL---I~~~L~------~~~l~~l~~~a~~-lGme~LvEvh---~~~el~~----a~~~ga~iiG 185 (695)
T PRK13802 123 DYQIWEARAHGADLVLL---IVAALD------DAQLKHLLDLAHE-LGMTVLVETH---TREEIER----AIAAGAKVIG 185 (695)
T ss_pred HHHHHHHHHcCCCEeeh---hHhhcC------HHHHHHHHHHHHH-cCCeEEEEeC---CHHHHHH----HHhCCCCEEE
Confidence 46788999999986433 333343 2366777777765 5599999998 4466644 6778999882
Q ss_pred cCC-CCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEe-ccCCCHHHHHHHHHHHHHhcCCCccCCCcceeecc
Q psy10250 302 TST-GKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPA-GGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 374 (387)
Q Consensus 302 TST-Gf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKas-GGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtS 374 (387)
-.. .. .|++ +-++.-..+....+..+ +++| +||+|.+|+..+. .+|+| ++.||+|
T Consensus 186 INnRdL----~tf~---vd~~~t~~L~~~ip~~~-~~VsESGI~~~~d~~~l~-----~~G~d-----avLIGes 242 (695)
T PRK13802 186 INARNL----KDLK---VDVNKYNELAADLPDDV-IKVAESGVFGAVEVEDYA-----RAGAD-----AVLVGEG 242 (695)
T ss_pred EeCCCC----ccce---eCHHHHHHHHhhCCCCc-EEEEcCCCCCHHHHHHHH-----HCCCC-----EEEECHH
Confidence 211 11 1222 11122333344556544 6665 8999999999999 58875 7999997
No 240
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=89.47 E-value=12 Score=35.74 Aligned_cols=132 Identities=14% Similarity=0.155 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcC
Q psy10250 217 LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAG 296 (387)
Q Consensus 217 ~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aG 296 (387)
+.+.=..-++.+++-|.+-|++.+|... . .+-|+.+++..+...+ .+++=.+-..|.++. +.++++|
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEiT~~tp~-----a---~~~i~~l~~~~~~~~p-~~~vGaGTVl~~e~a----~~a~~aG 91 (222)
T PRK07114 25 DVEVAKKVIKACYDGGARVFEFTNRGDF-----A---HEVFAELVKYAAKELP-GMILGVGSIVDAATA----ALYIQLG 91 (222)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCc-----H---HHHHHHHHHHHHhhCC-CeEEeeEeCcCHHHH----HHHHHcC
Confidence 4555556667777789999999987632 2 2334444332221112 356666666566654 4578888
Q ss_pred CCEEEcCCCCCC---------------CCCChhhhHhHH-----------------HHHHHHHHHcCCCceEeEeccCCC
Q psy10250 297 SDFIKTSTGKEK---------------TNATIPAGIIMC-----------------SAIKHFHKLSGKKIGLKPAGGIST 344 (387)
Q Consensus 297 aDfVKTSTGf~~---------------~gat~~~~~~m~-----------------~~v~~~~~~~~~~~gIKasGGIrt 344 (387)
|+|+-|+ |+.+ +-.|+..+.... .-++.++.-. +.+.+-++|||..
T Consensus 92 A~FiVsP-~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA~~~G~~~ikal~~p~-p~i~~~ptGGV~~ 169 (222)
T PRK07114 92 ANFIVTP-LFNPDIAKVCNRRKVPYSPGCGSLSEIGYAEELGCEIVKLFPGSVYGPGFVKAIKGPM-PWTKIMPTGGVEP 169 (222)
T ss_pred CCEEECC-CCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECcccccCHHHHHHHhccC-CCCeEEeCCCCCc
Confidence 8888654 5632 335554322200 1122222222 3588999999985
Q ss_pred -HHHHHHHHHHHHHhcCCCccCCCcceeeccc
Q psy10250 345 -FEDSVRWIYLVLIMLGPDWLNKDLFRIGASS 375 (387)
Q Consensus 345 -~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs 375 (387)
.+++..|+ .+|+ .-+|.+|
T Consensus 170 ~~~n~~~yl-----~aGa-------~avg~Gs 189 (222)
T PRK07114 170 TEENLKKWF-----GAGV-------TCVGMGS 189 (222)
T ss_pred chhcHHHHH-----hCCC-------EEEEECh
Confidence 68899999 4787 6777444
No 241
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=89.45 E-value=6.2 Score=37.83 Aligned_cols=128 Identities=21% Similarity=0.161 Sum_probs=73.8
Q ss_pred HHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCC
Q psy10250 225 IELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTST 304 (387)
Q Consensus 225 a~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTST 304 (387)
++.+.+.|++-+=+. +.. + +|+..+.+.|+. .-++.|+=..--++.+.+...... ..|--|+=|..
T Consensus 97 i~~~~~aG~~giiip-Dl~------~----ee~~~~~~~~~~-~g~~~i~~i~P~T~~~~i~~i~~~--~~~~vy~~s~~ 162 (242)
T cd04724 97 LRDAKEAGVDGLIIP-DLP------P----EEAEEFREAAKE-YGLDLIFLVAPTTPDERIKKIAEL--ASGFIYYVSRT 162 (242)
T ss_pred HHHHHHCCCcEEEEC-CCC------H----HHHHHHHHHHHH-cCCcEEEEeCCCCCHHHHHHHHhh--CCCCEEEEeCC
Confidence 566677787765332 332 2 467777777764 347777755544344444332211 35666666655
Q ss_pred CCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccchHHHHHH
Q psy10250 305 GKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQ 382 (387)
Q Consensus 305 Gf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~~~il~~ 382 (387)
|-. ++.+.. ..-+.+.|+.+++.. ++.|=+-|||++.+++..+.. + +| ..-+| |+..+.+.+
T Consensus 163 g~t-G~~~~~-~~~~~~~i~~lr~~~--~~pI~vggGI~~~e~~~~~~~-----~-AD-----gvVvG-Saiv~~~~~ 224 (242)
T cd04724 163 GVT-GARTEL-PDDLKELIKRIRKYT--DLPIAVGFGISTPEQAAEVAK-----Y-AD-----GVIVG-SALVKIIEE 224 (242)
T ss_pred CCC-CCccCC-ChhHHHHHHHHHhcC--CCcEEEEccCCCHHHHHHHHc-----c-CC-----EEEEC-HHHHHHHHh
Confidence 521 122210 112335667776653 577778899999999999984 4 42 45677 666666654
No 242
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=89.29 E-value=37 Score=37.05 Aligned_cols=154 Identities=16% Similarity=0.143 Sum_probs=89.1
Q ss_pred CCceEEEEecC-CCCCC--CCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCC-CcceEEEEe
Q psy10250 200 DDVKVASVAAG-FPSGQ--YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGE-KIHMKTILA 275 (387)
Q Consensus 200 ~~v~v~tVvig-FP~G~--~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~-~~~lKvIlE 275 (387)
.++++.+..-| =..|+ .+-++.-.-++.|++.|.|.|-+....+.+ +. +....+.++. +..+-+-|.
T Consensus 69 ~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~-----~n----~~~~i~~ak~~G~~v~~~i~ 139 (582)
T TIGR01108 69 PNTPLQMLLRGQNLLGYRHYADDVVERFVKKAVENGMDVFRIFDALNDP-----RN----LQAAIQAAKKHGAHAQGTIS 139 (582)
T ss_pred CCCEEEEEEccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH-----HH----HHHHHHHHHHcCCEEEEEEE
Confidence 35677665201 01233 445667778899999999999888766653 22 3333333322 233444333
Q ss_pred eccC--CChHHHHHHHHHHHHcCCCEE--EcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeE--eccCCCHHHHH
Q psy10250 276 VGEL--KTSENIYCASMTAMFAGSDFI--KTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKP--AGGISTFEDSV 349 (387)
Q Consensus 276 t~~L--~t~e~i~~a~~ia~~aGaDfV--KTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKa--sGGIrt~~~a~ 349 (387)
...- .+.+...+.++.+.++|+|.| |=.+| ..+|..+..++..+ ++..+-.+++.. --|.-.. ..+
T Consensus 140 ~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G----~~~P~~v~~lv~~l---k~~~~~pi~~H~Hnt~Gla~A-n~l 211 (582)
T TIGR01108 140 YTTSPVHTLETYLDLAEELLEMGVDSICIKDMAG----ILTPKAAYELVSAL---KKRFGLPVHLHSHATTGMAEM-ALL 211 (582)
T ss_pred eccCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC----CcCHHHHHHHHHHH---HHhCCCceEEEecCCCCcHHH-HHH
Confidence 2221 256778888999999999965 55566 36788776665544 444544444443 1122222 222
Q ss_pred HHHHHHHHhcCCCccCCCcceeeccc
Q psy10250 350 RWIYLVLIMLGPDWLNKDLFRIGASS 375 (387)
Q Consensus 350 ~~i~l~~~~~Ga~w~~~~~~RIGtSs 375 (387)
.-+ ++|++|++....=+|-..
T Consensus 212 aAv-----eaGa~~vd~ai~GlG~~t 232 (582)
T TIGR01108 212 KAI-----EAGADGIDTAISSMSGGT 232 (582)
T ss_pred HHH-----HhCCCEEEeccccccccc
Confidence 223 699998887777776654
No 243
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=89.12 E-value=19 Score=36.52 Aligned_cols=58 Identities=19% Similarity=0.147 Sum_probs=44.2
Q ss_pred EEEEeeccCCChHHHHHHHHHHHHcCCC---EEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCc
Q psy10250 271 KTILAVGELKTSENIYCASMTAMFAGSD---FIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKI 334 (387)
Q Consensus 271 KvIlEt~~L~t~e~i~~a~~ia~~aGaD---fVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~ 334 (387)
.+||-|+.- +.++|.+|+.++.+.|.- .++..|.| ++..+++-+ ..+..|++..+-.+
T Consensus 149 PiIlSTGma-~~~ei~~av~~~r~~g~~~i~LLhC~s~Y---Pap~ed~NL--~~i~~l~~~Fn~~v 209 (347)
T COG2089 149 PIILSTGMA-TIEEIEEAVAILRENGNPDIALLHCTSAY---PAPFEDVNL--KAIPKLAEAFNAIV 209 (347)
T ss_pred CEEEEcccc-cHHHHHHHHHHHHhcCCCCeEEEEecCCC---CCCHHHhhH--HHHHHHHHHhCCcc
Confidence 689999976 789999999999999886 78888887 355554433 56777777774333
No 244
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=89.11 E-value=1.8 Score=39.78 Aligned_cols=108 Identities=20% Similarity=0.244 Sum_probs=60.3
Q ss_pred HHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcC
Q psy10250 224 EIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTS 303 (387)
Q Consensus 224 Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTS 303 (387)
.++.+.+.|++-+ .+... +. . ...++...+ ...++-+.+. |.++.. .+.+.|+|||+.+
T Consensus 73 ~~~~a~~~gad~v--h~~~~-----~~--~---~~~~~~~~~--~~~~~g~~~~---t~~e~~----~a~~~gaD~v~~~ 131 (212)
T PRK00043 73 RVDLALAVGADGV--HLGQD-----DL--P---VADARALLG--PDAIIGLSTH---TLEEAA----AALAAGADYVGVG 131 (212)
T ss_pred hHHHHHHcCCCEE--ecCcc-----cC--C---HHHHHHHcC--CCCEEEEeCC---CHHHHH----HHhHcCCCEEEEC
Confidence 4577888898752 22221 11 1 122222222 2345556554 555553 3457899999976
Q ss_pred CCCCC---CCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 304 TGKEK---TNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 304 TGf~~---~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
.-|.. .+..... -.+.++.+++.. +.+.|=+.||| +.+++..++ .+|++
T Consensus 132 ~~~~~~~~~~~~~~~---g~~~~~~~~~~~-~~~~v~a~GGI-~~~~i~~~~-----~~Ga~ 183 (212)
T PRK00043 132 PIFPTPTKKDAKAPQ---GLEGLREIRAAV-GDIPIVAIGGI-TPENAPEVL-----EAGAD 183 (212)
T ss_pred CccCCCCCCCCCCCC---CHHHHHHHHHhc-CCCCEEEECCc-CHHHHHHHH-----HcCCC
Confidence 54321 1111110 013555655554 34888999999 689999998 58984
No 245
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=89.06 E-value=5.3 Score=40.68 Aligned_cols=116 Identities=18% Similarity=0.201 Sum_probs=74.4
Q ss_pred HHHHHH--CCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEc
Q psy10250 225 IELLAK--QKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKT 302 (387)
Q Consensus 225 a~~Ai~--~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKT 302 (387)
++..++ .|+|- +|||.. .|+.+.+.+-|+.+++..++ +-| +-= -.-|.| +++-.+++|||.||-
T Consensus 113 ~~~L~~~~~g~D~--iviD~A---hGhs~~~i~~ik~ik~~~P~---~~v-IaG-NV~T~e----~a~~Li~aGAD~vKV 178 (346)
T PRK05096 113 TKQILALSPALNF--ICIDVA---NGYSEHFVQFVAKAREAWPD---KTI-CAG-NVVTGE----MVEELILSGADIVKV 178 (346)
T ss_pred HHHHHhcCCCCCE--EEEECC---CCcHHHHHHHHHHHHHhCCC---CcE-EEe-cccCHH----HHHHHHHcCCCEEEE
Confidence 334444 36665 567875 49999999999999997765 223 322 233554 556688999999997
Q ss_pred CCCCCCC-------CCChhhhHhHHHHHHHHHHHc-CCCceEeEeccCCCHHHHHHHHHHHHHhcCCCc
Q psy10250 303 STGKEKT-------NATIPAGIIMCSAIKHFHKLS-GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 363 (387)
Q Consensus 303 STGf~~~-------gat~~~~~~m~~~v~~~~~~~-~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w 363 (387)
.-|=|.. |.-.++. .+|....+.. +..+.|=|-||||+.=|..+-+ .+||++
T Consensus 179 GIGpGSiCtTr~vtGvG~PQl----tAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAl-----aaGAd~ 238 (346)
T PRK05096 179 GIGPGSVCTTRVKTGVGYPQL----SAVIECADAAHGLGGQIVSDGGCTVPGDVAKAF-----GGGADF 238 (346)
T ss_pred cccCCccccCccccccChhHH----HHHHHHHHHHHHcCCCEEecCCcccccHHHHHH-----HcCCCE
Confidence 6654332 2223332 3333333322 2356788999999998877777 389874
No 246
>PRK00208 thiG thiazole synthase; Reviewed
Probab=88.74 E-value=4.8 Score=39.24 Aligned_cols=124 Identities=12% Similarity=0.079 Sum_probs=74.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCc---ceEEEEeeccCCChHHHHHHH
Q psy10250 213 SGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKI---HMKTILAVGELKTSENIYCAS 289 (387)
Q Consensus 213 ~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~---~lKvIlEt~~L~t~e~i~~a~ 289 (387)
.|..+.+.-+.-++.|.+.+-. |+| -+. --||..+...|+.+.++++.. . -+.|+= |- +++ . ..|
T Consensus 70 aG~~ta~eAv~~a~lare~~~~--~~i-KlE--Vi~d~~~llpd~~~tv~aa~~-L~~~Gf~vlp---yc-~~d-~-~~a 137 (250)
T PRK00208 70 AGCRTAEEAVRTARLAREALGT--NWI-KLE--VIGDDKTLLPDPIETLKAAEI-LVKEGFVVLP---YC-TDD-P-VLA 137 (250)
T ss_pred CCCCCHHHHHHHHHHHHHHhCC--CeE-EEE--EecCCCCCCcCHHHHHHHHHH-HHHCCCEEEE---Ee-CCC-H-HHH
Confidence 5888888888888888887622 221 110 024555556666666666542 1 255551 33 222 2 135
Q ss_pred HHHHHcCCCEEEc--CC-CCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 290 MTAMFAGSDFIKT--ST-GKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 290 ~ia~~aGaDfVKT--ST-Gf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
+...++|+++|=. +. |-+.+-.+++ -++.+++. .++.|=+-|||.|.+||...+ ++|++
T Consensus 138 k~l~~~G~~~vmPlg~pIGsg~gi~~~~-------~i~~i~e~--~~vpVIveaGI~tpeda~~Am-----elGAd 199 (250)
T PRK00208 138 KRLEEAGCAAVMPLGAPIGSGLGLLNPY-------NLRIIIEQ--ADVPVIVDAGIGTPSDAAQAM-----ELGAD 199 (250)
T ss_pred HHHHHcCCCEeCCCCcCCCCCCCCCCHH-------HHHHHHHh--cCCeEEEeCCCCCHHHHHHHH-----HcCCC
Confidence 5567779999944 11 2111223443 35555554 357788899999999999999 69984
No 247
>PRK12999 pyruvate carboxylase; Reviewed
Probab=88.47 E-value=31 Score=40.64 Aligned_cols=197 Identities=14% Similarity=0.096 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHc--CCCEEecCCCCCCCCCCCcccccchhccccchhhhhhHHHHHHhhcccccccCCCC--------
Q psy10250 73 SENIYYASMTAMFA--GSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEFIDLTTLSGD-------- 142 (387)
Q Consensus 73 ~e~i~~a~~~a~~a--g~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ID~T~L~~~-------- 142 (387)
.+++..++....++ |.+.|-.. +|+|. +..+ ++.. |+--..++++.+.+-.|.|.--
T Consensus 554 ~~d~l~ia~~l~~~~~g~~siE~~-----ggatf--d~~~-----r~l~-e~p~erl~~~r~~~~~~~~q~l~Rg~n~vg 620 (1146)
T PRK12999 554 TKDLLRIAPATARLLPNLFSLEMW-----GGATF--DVAY-----RFLK-EDPWERLAELREAAPNVLFQMLLRGSNAVG 620 (1146)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEee-----CCcch--hhhc-----cccC-CCHHHHHHHHHHhCCCCeEEEEeccccccc
Confidence 35566677777889 99999865 34543 2222 2222 2222233444444433332211
Q ss_pred --CCH-HHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEecCCC------C
Q psy10250 143 --DTE-AVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFP------S 213 (387)
Q Consensus 143 --~T~-~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP------~ 213 (387)
.-+ +-++.+|+.|.. +...+--|+...++++......+... ..+...-.. ++|- .
T Consensus 621 y~~yp~~v~~~~i~~a~~--------------~Gid~~rifd~lnd~~~~~~~i~~vk-~~g~~~~~~-i~ytg~~~d~~ 684 (1146)
T PRK12999 621 YTNYPDNVVRAFVREAAA--------------AGIDVFRIFDSLNWVENMRVAIDAVR-ETGKIAEAA-ICYTGDILDPA 684 (1146)
T ss_pred ccCCCchHHHHHHHHHHH--------------cCCCEEEEeccCChHHHHHHHHHHHH-HcCCeEEEE-EEEEecCCCCC
Confidence 112 334445888772 13456667788888877665553210 012111122 2443 2
Q ss_pred -CCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHH
Q psy10250 214 -GQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTA 292 (387)
Q Consensus 214 -G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia 292 (387)
+.++.+.=+.-++++.+.||+.|-+.=-.|.+ ....+++-++++++.. .+-|+..-=+|.-.-...+..|
T Consensus 685 ~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l---~P~~~~~lv~~lk~~~------~ipi~~H~Hnt~Gla~an~laA 755 (1146)
T PRK12999 685 RAKYDLDYYVDLAKELEKAGAHILAIKDMAGLL---KPAAAYELVSALKEEV------DLPIHLHTHDTSGNGLATYLAA 755 (1146)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCccCCC---CHHHHHHHHHHHHHHc------CCeEEEEeCCCCchHHHHHHHH
Confidence 23577777788899999999998544223433 3677788888888754 2345655554434333445679
Q ss_pred HHcCCCEEEcCC-CCC
Q psy10250 293 MFAGSDFIKTST-GKE 307 (387)
Q Consensus 293 ~~aGaDfVKTST-Gf~ 307 (387)
+++|||+|-|+- |++
T Consensus 756 ~~aGad~vD~av~glg 771 (1146)
T PRK12999 756 AEAGVDIVDVAVASMS 771 (1146)
T ss_pred HHhCCCEEEecchhhc
Confidence 999999999976 443
No 248
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=88.39 E-value=3.7 Score=41.76 Aligned_cols=136 Identities=13% Similarity=-0.002 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHCCCCeeeeecCchhhhcC-ChhHHHHHHHHHHHHhCCCcceEEEE---eeccCCChHHHHHHHHHHHHc
Q psy10250 220 TRLHEIELLAKQKVDEVDIVIQRSLVLNN-QWPELFSEVKQMKEKCGEKIHMKTIL---AVGELKTSENIYCASMTAMFA 295 (387)
Q Consensus 220 ~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g-~~~~v~~Ei~~v~~~~~~~~~lKvIl---Et~~L~t~e~i~~a~~ia~~a 295 (387)
.+..++..++..+|.+--+.+.+|....+ ....+.+.++.+++..++ .++=+=| ..+.. +.+++.++.+.+
T Consensus 73 ~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~~~~~~~~~vr~~~p~-~p~~aNl~~~~~~~~-~~~~~~~~~~~~--- 147 (352)
T PRK05437 73 EKAKEINRKLAEAAEELGIAMGVGSQRAALKDPELADSFSVVRKVAPD-GLLFANLGAVQLYGY-GVEEAQRAVEMI--- 147 (352)
T ss_pred hhHHHHHHHHHHHHHHcCCCeEecccHhhccChhhHHHHHHHHHHCCC-ceEEeecCccccCCC-CHHHHHHHHHhc---
Confidence 33455556666666777766677665532 123377888888887765 3432211 12223 356666665444
Q ss_pred CCCEEEcCCCCC-----CCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCC
Q psy10250 296 GSDFIKTSTGKE-----KTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKD 367 (387)
Q Consensus 296 GaDfVKTSTGf~-----~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~ 367 (387)
++|++-=.-+.. +.+- .+..-+++.|+.+++.++-.+.+|.+|.--+.++|..+. .+|++.+.-+
T Consensus 148 ~adal~l~l~~~qe~~~p~g~--~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~-----~~Gvd~I~Vs 217 (352)
T PRK05437 148 EADALQIHLNPLQELVQPEGD--RDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLA-----DAGVKAIDVA 217 (352)
T ss_pred CCCcEEEeCccchhhcCCCCc--ccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHH-----HcCCCEEEEC
Confidence 555544333321 1121 123445678888888888899999999888899999888 5899887543
No 249
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=88.27 E-value=5.5 Score=38.16 Aligned_cols=127 Identities=14% Similarity=0.093 Sum_probs=74.1
Q ss_pred HHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCC
Q psy10250 225 IELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTST 304 (387)
Q Consensus 225 a~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTST 304 (387)
++.+.+.|++-+=+. +.. ++. .+|+..+.+.++. .-++++++..--++.+.+...... ..|.-|+ |..
T Consensus 94 i~~~~~~Gadgvii~-dlp------~e~-~~~~~~~~~~~~~-~Gl~~~~~v~p~T~~e~l~~~~~~--~~~~l~m-sv~ 161 (244)
T PRK13125 94 LNMARDVGADGVLFP-DLL------IDY-PDDLEKYVEIIKN-KGLKPVFFTSPKFPDLLIHRLSKL--SPLFIYY-GLR 161 (244)
T ss_pred HHHHHHcCCCEEEEC-CCC------CCc-HHHHHHHHHHHHH-cCCCEEEEECCCCCHHHHHHHHHh--CCCEEEE-EeC
Confidence 667778898886553 110 111 2355556666654 358999998876444444333221 1233344 433
Q ss_pred -CCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccchHHHH
Q psy10250 305 -GKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNI 380 (387)
Q Consensus 305 -Gf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~~~il 380 (387)
||+. ++. .-+.+.++.+++... +..|=+=|||+|.+++..++ .+|+| .+-+| |+..+.+
T Consensus 162 ~~~g~---~~~--~~~~~~i~~lr~~~~-~~~i~v~gGI~~~e~i~~~~-----~~gaD-----~vvvG-Sai~~~~ 221 (244)
T PRK13125 162 PATGV---PLP--VSVERNIKRVRNLVG-NKYLVVGFGLDSPEDARDAL-----SAGAD-----GVVVG-TAFIEEL 221 (244)
T ss_pred CCCCC---Cch--HHHHHHHHHHHHhcC-CCCEEEeCCcCCHHHHHHHH-----HcCCC-----EEEEC-HHHHHHH
Confidence 3432 332 224456777777654 33466778999999999998 58985 46667 5565544
No 250
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=88.17 E-value=8.7 Score=36.98 Aligned_cols=141 Identities=13% Similarity=0.128 Sum_probs=87.3
Q ss_pred ceEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCC
Q psy10250 202 VKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKT 281 (387)
Q Consensus 202 v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t 281 (387)
+.+++. .||..-..| ...++..++-|=+| +.+|... -.+++.+|+..+.+ ..++|+-.+.- +
T Consensus 17 ~~~~~l-gg~~~d~~t----~~a~~~~~~rgr~e--f~~~~e~----~~~~i~~e~~~~~~------~~~vivnv~~~-~ 78 (231)
T TIGR00736 17 FAIVTL-GGYNADRAT----YKASRDIEKRGRKE--FSFNLEE----FNSYIIEQIKKAES------RALVSVNVRFV-D 78 (231)
T ss_pred cCEEEE-CCccCCHHH----HHHHHHHHHcCCcc--cCcCccc----HHHHHHHHHHHHhh------cCCEEEEEecC-C
Confidence 455555 455543322 22345667779888 4566533 45778888888852 24799999988 7
Q ss_pred hHHHHHHHHHHHHcCCCEEEcCCCCC--------CCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCC---CHHHHHH
Q psy10250 282 SENIYCASMTAMFAGSDFIKTSTGKE--------KTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGIS---TFEDSVR 350 (387)
Q Consensus 282 ~e~i~~a~~ia~~aGaDfVKTSTGf~--------~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIr---t~~~a~~ 350 (387)
.++..++++.+.+ ++|+|-=..|-- .+.+-+.+-..+.+-++.+++ .+..+-+|..-|+. +.+-|..
T Consensus 79 ~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~~~~~a~~ 156 (231)
T TIGR00736 79 LEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE-LNKPIFVKIRGNCIPLDELIDALN 156 (231)
T ss_pred HHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcchHHHHHHH
Confidence 8889999888765 899998777651 111222222333344444443 36789999998774 2233333
Q ss_pred HHHHHHHhcCCCccCCC
Q psy10250 351 WIYLVLIMLGPDWLNKD 367 (387)
Q Consensus 351 ~i~l~~~~~Ga~w~~~~ 367 (387)
+. .+|++||.-.
T Consensus 157 l~-----~aGad~i~Vd 168 (231)
T TIGR00736 157 LV-----DDGFDGIHVD 168 (231)
T ss_pred HH-----HcCCCEEEEe
Confidence 33 7999998544
No 251
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=88.16 E-value=36 Score=35.52 Aligned_cols=218 Identities=17% Similarity=0.152 Sum_probs=134.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHcccCccEEEEEeccCC-CCHHHHHHHHH
Q psy10250 3 PSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGEL-KTSENIYYASM 81 (387)
Q Consensus 3 P~G~~~~~~K~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L-~~~e~i~~a~~ 81 (387)
|--..+++-|+.=++..-+.|.+.|+.-.+.. -.++ .+-++.+.. .. .. .+.... .-...+....+
T Consensus 17 ~g~~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~--s~~~----~~~~~~i~~--~~--~~---~~~~~~~~~~~~~~~~~e 83 (409)
T COG0119 17 PGVSFSVEEKIRIAKALDDLGVDYIEAGFPVA--SPGD----FEFVRAIAE--KA--GL---FICALIAALARAIKRDIE 83 (409)
T ss_pred CCCcCCHHHHHHHHHHHHHcCCCEEEEeCCcC--Chhh----HHHHHHHHH--hc--Cc---ccchhhhhhHHhHHhhHH
Confidence 44456789999999999999999999876653 2222 233333332 11 11 111111 11234555677
Q ss_pred HHHHcCCCEEecCCCCCCCCCCCcccccchhccccchhhhhhHHHHHHhhcccccccCCCCCCHHHHHHHHHHhcCCCcH
Q psy10250 82 TAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEFIDLTTLSGDDTEAVVETLTLKAIQPLSE 161 (387)
Q Consensus 82 ~a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ID~T~L~~~~T~~~i~~l~~~A~~~~~~ 161 (387)
.++++|+|.|.+--. .| +.++... |+ .|.+++.+...+++
T Consensus 84 a~~~a~~~~i~if~~------------tS---d~h~~~~------------------~~--~t~~e~l~~~~~~v----- 123 (409)
T COG0119 84 ALLEAGVDRIHIFIA------------TS---DLHLRYK------------------LK--KTREEVLERAVDAV----- 123 (409)
T ss_pred HHHhCCCCEEEEEEc------------CC---HHHHHHH------------------hC--CCHHHHHHHHHHHH-----
Confidence 889999998775221 11 1111111 22 46666666655555
Q ss_pred HHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEE--EEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeee
Q psy10250 162 ELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVA--SVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIV 239 (387)
Q Consensus 162 ~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~--tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~V 239 (387)
+++++. ++.+. .. -.| ....+.-+.-++.+.+.||+.|-+.
T Consensus 124 -------------------------~ya~~~--------g~~~~~~~E-d~~---rt~~~~l~~~~~~~~~~ga~~i~l~ 166 (409)
T COG0119 124 -------------------------EYARDH--------GLEVRFSAE-DAT---RTDPEFLAEVVKAAIEAGADRINLP 166 (409)
T ss_pred -------------------------HHHHHc--------CCeEEEEee-ccc---cCCHHHHHHHHHHHHHcCCcEEEEC
Confidence 333321 23222 22 122 4556666666777777889999988
Q ss_pred cCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCC-CCC--CCCCChhhh
Q psy10250 240 IQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTST-GKE--KTNATIPAG 316 (387)
Q Consensus 240 in~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTST-Gf~--~~gat~~~~ 316 (387)
=.+|. .....+++-++.+++..++ +++|+...=++.-.-..-+..|.++||++|-++- |.| ++++.++.+
T Consensus 167 DTvG~---~~P~~~~~~i~~l~~~v~~----~~~l~~H~HnD~G~AvANslaAv~aGa~~v~~TvnGiGERaGna~l~~v 239 (409)
T COG0119 167 DTVGV---ATPNEVADIIEALKANVPN----KVILSVHCHNDLGMAVANSLAAVEAGADQVEGTVNGIGERAGNAALEEV 239 (409)
T ss_pred CCcCc---cCHHHHHHHHHHHHHhCCC----CCeEEEEecCCcchHHHHHHHHHHcCCcEEEEecccceeccccccHHHH
Confidence 77775 3577888888888875543 7999998876655555568899999999999764 666 677888754
Q ss_pred H
Q psy10250 317 I 317 (387)
Q Consensus 317 ~ 317 (387)
.
T Consensus 240 ~ 240 (409)
T COG0119 240 V 240 (409)
T ss_pred H
Confidence 3
No 252
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=88.10 E-value=43 Score=36.36 Aligned_cols=98 Identities=13% Similarity=0.073 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHHCCCC------eeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHH
Q psy10250 217 LLETRLHEIELLAKQKVD------EVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASM 290 (387)
Q Consensus 217 ~~e~K~~Ea~~Ai~~GAd------EID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ 290 (387)
..+.-+.-++.+++.|++ .|-+.=-+| -.....+.+-++.+++..+. ..+++|+...=++.-.=..-+.
T Consensus 182 d~~~l~~~~~~a~~ag~~~~~~~~~i~l~DTvG---~a~P~~~~~~i~~l~~~~~~--~~~~~l~vH~HND~GlAvANsl 256 (564)
T TIGR00970 182 ELEFAKEVCEAVKEVWAPTPERPIIFNLPATVE---MTTPNVYADSIEYFSTNIAE--REKVCLSLHPHNDRGTAVAAAE 256 (564)
T ss_pred CHHHHHHHHHHHHHhCCCccCCeeEEEeccccC---ccCHHHHHHHHHHHHHhcCc--ccCceEEEEECCCCChHHHHHH
Confidence 456666667777888764 332222233 23567788888888876654 3578899987765554445578
Q ss_pred HHHHcCCCEEEcCC-CCCC--CCCChhhhHhH
Q psy10250 291 TAMFAGSDFIKTST-GKEK--TNATIPAGIIM 319 (387)
Q Consensus 291 ia~~aGaDfVKTST-Gf~~--~gat~~~~~~m 319 (387)
.|+++||+.|-.+- |.|. +++.++.+..+
T Consensus 257 aAv~aGa~~v~gt~~G~GERaGNa~le~lv~~ 288 (564)
T TIGR00970 257 LGFLAGADRIEGCLFGNGERTGNVDLVTLALN 288 (564)
T ss_pred HHHHhCCCEEEeecCcCCccccCccHHHHHHH
Confidence 89999999998533 5443 45777654443
No 253
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=87.93 E-value=13 Score=40.73 Aligned_cols=288 Identities=11% Similarity=0.044 Sum_probs=164.6
Q ss_pred HHHHHcCCCeeeee------cchhHHhcCChhHHHHHHHHHHHHcccCccEEEEE----eccCCC-CHHHHHHHHHHHHH
Q psy10250 17 ELLAKQKVDEVDIV------IQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTIL----AVGELK-TSENIYYASMTAMF 85 (387)
Q Consensus 17 ~~a~~~GA~EiD~V------in~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIl----Et~~L~-~~e~i~~a~~~a~~ 85 (387)
+..-+.|..-|++- ..++.++..+|+++ +.+++..++ .++.+++ =.||=. .++-++.-++.+.+
T Consensus 33 ~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl----~~~r~~~pn-t~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a~~ 107 (596)
T PRK14042 33 NKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRL----RQLRQALPN-TQLSMLLRGQNLLGYRNYADDVVRAFVKLAVN 107 (596)
T ss_pred HHHHhcCCCEEEeeCCcccceeecccCCCHHHHH----HHHHHhCCC-CceEEEeccccccccccCChHHHHHHHHHHHH
Confidence 33333554444432 37788888888776 456666654 6777777 444432 34566778899999
Q ss_pred cCCCEEecCCCCCCCCCCCcccccchhccccchhhhhhHHHHHHh----hcccccccCCCCCCHHHHHHHHHHhcCCCcH
Q psy10250 86 AGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKI----IEFIDLTTLSGDDTEAVVETLTLKAIQPLSE 161 (387)
Q Consensus 86 ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~ID~T~L~~~~T~~~i~~l~~~A~~~~~~ 161 (387)
.|+|++..-+..+ +...| +....++++. -..|=+|. +|-.|.+.+.+++++..
T Consensus 108 ~Gidv~Rifd~ln-------d~~n~----------~~~i~~~k~~G~~~~~~i~yt~-sp~~t~e~~~~~ak~l~----- 164 (596)
T PRK14042 108 NGVDVFRVFDALN-------DARNL----------KVAIDAIKSHKKHAQGAICYTT-SPVHTLDNFLELGKKLA----- 164 (596)
T ss_pred cCCCEEEEcccCc-------chHHH----------HHHHHHHHHcCCEEEEEEEecC-CCCCCHHHHHHHHHHHH-----
Confidence 9999999766532 12222 2222233332 22333443 78899999999999988
Q ss_pred HHHHHHhhhccCCCeEEEEEC-------CccHHHHHHHhhhcCCCCCceEEEEecCCCCCCCCHHHHHHHHHHHHHCCCC
Q psy10250 162 ELKEKVLHQQANVHTAAVCVY-------PARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVD 234 (387)
Q Consensus 162 ~~~~~~~~~~~~~~~~aVcV~-------P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAd 234 (387)
++|+..||+. |..+....+.|+.. .+++ ++| |+..+.-.=++-.-.|++.|||
T Consensus 165 -----------~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~---~~ip-----i~~-H~Hnt~Gla~an~laAieaGad 224 (596)
T PRK14042 165 -----------EMGCDSIAIKDMAGLLTPTVTVELYAGLKQA---TGLP-----VHL-HSHSTSGLASICHYEAVLAGCN 224 (596)
T ss_pred -----------HcCCCEEEeCCcccCCCHHHHHHHHHHHHhh---cCCE-----EEE-EeCCCCCcHHHHHHHHHHhCCC
Confidence 6788899884 65555555555531 2332 244 3444444556777889999999
Q ss_pred eeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHc---CCCEEEcCCCCC----
Q psy10250 235 EVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFA---GSDFIKTSTGKE---- 307 (387)
Q Consensus 235 EID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~a---GaDfVKTSTGf~---- 307 (387)
-||.-++-=.-..| +.-.+++....+-.+ .+|+ + +.+.+..+++...+. =..|--..+++.
T Consensus 225 ~iD~ai~glGg~tG--n~~tE~lv~~L~~~g--------~~tg-i-dl~~l~~~~~~~~~vr~~y~~~~~~~~~~~~~v~ 292 (596)
T PRK14042 225 HIDTAISSFSGGAS--HPPTEALVAALTDTP--------YDTE-L-DLNILLEIDDYFKAVRKKYSQFESEAQNIDPRVQ 292 (596)
T ss_pred EEEeccccccCCCC--cHhHHHHHHHHHhcC--------CCCC-C-CHHHHHHHHHHHHHHHHHHhhcCCccccCCccee
Confidence 99999874222223 344455544433221 2333 3 344555555443332 233432233332
Q ss_pred ----CCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCcc-CCCcceeeccchHHHHH
Q psy10250 308 ----KTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL-NKDLFRIGASSLLNNIL 381 (387)
Q Consensus 308 ----~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~-~~~~~RIGtSs~~~il~ 381 (387)
|+|.-- ..+. ..|--|=-.-+++.++.+.-+.+.+|--++ +|.---+|+-..++.+.
T Consensus 293 ~hq~PGG~~s--------nl~~---------Ql~~~g~~d~~~ev~~e~~~v~~~lG~~~~VTP~Sqivg~qA~~Nvl~ 354 (596)
T PRK14042 293 LYQVPGGMIS--------NLYN---------QLKEQNALDKMDAVHKEIPRVRKDLGYPPLVTPTSQVVGTQAVINVLT 354 (596)
T ss_pred ecCCCcchhh--------HHHH---------HHHHCCcHhHHHHHHHHHHHHHHHcCCCCeECCcCcEEEEEehhhccC
Confidence 222211 1111 111123344578888888888888886553 77766777766655443
No 254
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=87.80 E-value=9.3 Score=38.31 Aligned_cols=114 Identities=11% Similarity=0.096 Sum_probs=74.7
Q ss_pred cCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCC-----CCCCCChh
Q psy10250 240 IQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGK-----EKTNATIP 314 (387)
Q Consensus 240 in~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf-----~~~gat~~ 314 (387)
+|.-.+.+--.+.+.++++.+++... +-+|+-..-- +.++..++++.+.++|+|+|--.-+. +..|.+++
T Consensus 76 ~n~~gl~n~g~d~~~~~i~~~~~~~~----~pvi~sI~g~-~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~ 150 (334)
T PRK07565 76 FPEPAKFYVGPEEYLELIRRAKEAVD----IPVIASLNGS-SAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVE 150 (334)
T ss_pred hhhhhccCcCHHHHHHHHHHHHHhcC----CcEEEEeccC-CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHH
Confidence 55444555557888889988876542 3456666554 56778888899999999999763332 11233332
Q ss_pred hhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCcc
Q psy10250 315 AGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 364 (387)
Q Consensus 315 ~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~ 364 (387)
+ .+.+-++.+++.+.-.+-+|.++++.+..+....+. +.|++.+
T Consensus 151 ~--~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~----~~G~dgI 194 (334)
T PRK07565 151 Q--RYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLD----AAGADGL 194 (334)
T ss_pred H--HHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHH----HcCCCeE
Confidence 2 233555666667777899999988765555555443 6899866
No 255
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=87.77 E-value=18 Score=34.56 Aligned_cols=114 Identities=16% Similarity=0.136 Sum_probs=66.5
Q ss_pred HHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCC-----------ChHHHHHHHHH
Q psy10250 223 HEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELK-----------TSENIYCASMT 291 (387)
Q Consensus 223 ~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~-----------t~e~i~~a~~i 291 (387)
..++.+++.||+-+ |++-.++.+ ++. ++++.+..++ |+++-...-. +.-......+.
T Consensus 89 e~v~~~l~~Ga~kv--vigt~a~~~--~~~----l~~~~~~fg~----~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~ 156 (234)
T PRK13587 89 SQIMDYFAAGINYC--IVGTKGIQD--TDW----LKEMAHTFPG----RIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQ 156 (234)
T ss_pred HHHHHHHHCCCCEE--EECchHhcC--HHH----HHHHHHHcCC----CEEEEEEeeCCEEEecCCcccCCCCHHHHHHH
Confidence 45788888899884 778777763 333 3333333333 1222221110 11112344556
Q ss_pred HHHcCCC-EEEcCCCCCC--CCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 292 AMFAGSD-FIKTSTGKEK--TNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 292 a~~aGaD-fVKTSTGf~~--~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
..+.|+. +|=|+..... .|..++ -++.+.+. ..+.|=++|||++.++...++ .+|++
T Consensus 157 ~~~~g~~~ii~tdi~~dGt~~G~~~~-------li~~l~~~--~~ipvi~~GGi~s~edi~~l~-----~~G~~ 216 (234)
T PRK13587 157 LSDIPLGGIIYTDIAKDGKMSGPNFE-------LTGQLVKA--TTIPVIASGGIRHQQDIQRLA-----SLNVH 216 (234)
T ss_pred HHHcCCCEEEEecccCcCCCCccCHH-------HHHHHHHh--CCCCEEEeCCCCCHHHHHHHH-----HcCCC
Confidence 6777865 6777775432 344453 23444443 357789999999999999999 47873
No 256
>PRK01362 putative translaldolase; Provisional
Probab=87.58 E-value=26 Score=33.28 Aligned_cols=120 Identities=18% Similarity=0.196 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHc
Q psy10250 216 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFA 295 (387)
Q Consensus 216 ~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~a 295 (387)
...+.-+.|++...+.+- . +++-+..-..| +++++.+...+.. +-+ |... +.+|. .+|.++
T Consensus 61 ~d~~~m~~~a~~l~~~~~-~--i~iKIP~T~~G--------~~a~~~L~~~Gi~--v~~-T~vf-s~~Qa----~~Aa~a 121 (214)
T PRK01362 61 LDAEGMIKEGRELAKIAP-N--VVVKIPMTPEG--------LKAVKALSKEGIK--TNV-TLIF-SANQA----LLAAKA 121 (214)
T ss_pred CCHHHHHHHHHHHHHhCC-C--EEEEeCCCHHH--------HHHHHHHHHCCCc--eEE-eeec-CHHHH----HHHHhc
Confidence 578888899999888863 3 45544433334 5555555433222 221 2234 44444 356678
Q ss_pred CCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 296 GSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 296 GaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
|++||--=-|.-.. .. .+..-++..++.+.+..+.+.+|.++ .+|+.+|+.++. .+|++
T Consensus 122 Ga~yispyvgRi~d-~g-~dg~~~i~~~~~~~~~~~~~tkilaA-S~r~~~~v~~~~-----~~G~d 180 (214)
T PRK01362 122 GATYVSPFVGRLDD-IG-TDGMELIEDIREIYDNYGFDTEIIAA-SVRHPMHVLEAA-----LAGAD 180 (214)
T ss_pred CCcEEEeecchHhh-cC-CCHHHHHHHHHHHHHHcCCCcEEEEe-ecCCHHHHHHHH-----HcCCC
Confidence 99999776665321 00 11222334555555666778889886 799999999998 58985
No 257
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=87.18 E-value=30 Score=33.47 Aligned_cols=101 Identities=14% Similarity=0.042 Sum_probs=68.5
Q ss_pred cCCCCCCCCHHHH-HHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHH
Q psy10250 209 AGFPSGQYLLETR-LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYC 287 (387)
Q Consensus 209 igFP~G~~~~e~K-~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~ 287 (387)
+++|.+...+... ..-++++.+.|+++|=++=-.|. ...+.+++=++.+++..++ + .+.|+...=++...=..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~---~~P~~v~~lv~~l~~~~~~--~-~i~l~~H~Hn~~GlA~A 205 (268)
T cd07940 132 FSAEDATRTDLDFLIEVVEAAIEAGATTINIPDTVGY---LTPEEFGELIKKLKENVPN--I-KVPISVHCHNDLGLAVA 205 (268)
T ss_pred EeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC---CCHHHHHHHHHHHHHhCCC--C-ceeEEEEecCCcchHHH
Confidence 3888766554444 66677888899999977655664 3577888888888876643 1 45677766655444444
Q ss_pred HHHHHHHcCCCEEEcCCC-CC--CCCCChhh
Q psy10250 288 ASMTAMFAGSDFIKTSTG-KE--KTNATIPA 315 (387)
Q Consensus 288 a~~ia~~aGaDfVKTSTG-f~--~~gat~~~ 315 (387)
-+..|+++|+++|-+|-+ .| .+++..|.
T Consensus 206 n~laAi~aG~~~iD~s~~GlG~~aGN~~tE~ 236 (268)
T cd07940 206 NSLAAVEAGARQVECTINGIGERAGNAALEE 236 (268)
T ss_pred HHHHHHHhCCCEEEEEeeccccccccccHHH
Confidence 467799999999999873 43 34555653
No 258
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=87.05 E-value=2.7 Score=39.88 Aligned_cols=64 Identities=22% Similarity=0.320 Sum_probs=43.9
Q ss_pred HHHHHHHHHHcCCC---EEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCC
Q psy10250 285 IYCASMTAMFAGSD---FIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGP 361 (387)
Q Consensus 285 i~~a~~ia~~aGaD---fVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga 361 (387)
....++...++|+| ++-.+.+....+..+ +.++.+++.+ .+.|=+.|||++.+++..++. .|+
T Consensus 29 ~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~-------~~i~~i~~~~--~~pv~~~GGI~s~~d~~~~l~-----~G~ 94 (243)
T cd04731 29 PVELAKRYNEQGADELVFLDITASSEGRETML-------DVVERVAEEV--FIPLTVGGGIRSLEDARRLLR-----AGA 94 (243)
T ss_pred HHHHHHHHHHCCCCEEEEEcCCcccccCcccH-------HHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHH-----cCC
Confidence 44566778889999 555554322234433 3455666554 377889999999999999994 787
Q ss_pred C
Q psy10250 362 D 362 (387)
Q Consensus 362 ~ 362 (387)
+
T Consensus 95 ~ 95 (243)
T cd04731 95 D 95 (243)
T ss_pred c
Confidence 4
No 259
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=87.04 E-value=29 Score=33.24 Aligned_cols=151 Identities=13% Similarity=0.132 Sum_probs=99.9
Q ss_pred CCceEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeecc-
Q psy10250 200 DDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGE- 278 (387)
Q Consensus 200 ~~v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~- 278 (387)
..+++... +++ + +.+.-..+++++++.|.+-+-+=+. ++.+.-.+-++++++++++ -+++.+....
T Consensus 73 ~~i~~~~~-~~~--~--~~~~~~~~~~~~~~~G~~~~KiKvg------~~~~~d~~~v~~vr~~~g~--~~~l~vDan~~ 139 (265)
T cd03315 73 DRVRVAHM-LGL--G--EPAEVAEEARRALEAGFRTFKLKVG------RDPARDVAVVAALREAVGD--DAELRVDANRG 139 (265)
T ss_pred CceEEEEE-ecC--C--CHHHHHHHHHHHHHCCCCEEEEecC------CCHHHHHHHHHHHHHhcCC--CCEEEEeCCCC
Confidence 45666655 333 2 4566678899999999988887442 2334445567788887765 3577888654
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHh
Q psy10250 279 LKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIM 358 (387)
Q Consensus 279 L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~ 358 (387)
+ +.++..+.++...+.|.+||.-+.-. ... +..+.+++.+ .+.|=+-+.+.+..++..++. .
T Consensus 140 ~-~~~~a~~~~~~l~~~~i~~iEeP~~~----~d~-------~~~~~l~~~~--~ipia~dE~~~~~~~~~~~i~----~ 201 (265)
T cd03315 140 W-TPKQAIRALRALEDLGLDYVEQPLPA----DDL-------EGRAALARAT--DTPIMADESAFTPHDAFRELA----L 201 (265)
T ss_pred c-CHHHHHHHHHHHHhcCCCEEECCCCc----ccH-------HHHHHHHhhC--CCCEEECCCCCCHHHHHHHHH----h
Confidence 5 56778788888888999999875421 112 2344444432 355666667889999998885 3
Q ss_pred cCCCccCCCcceeec-cchHHHHH
Q psy10250 359 LGPDWLNKDLFRIGA-SSLLNNIL 381 (387)
Q Consensus 359 ~Ga~w~~~~~~RIGt-Ss~~~il~ 381 (387)
-+.+.++++..|+|. +...++..
T Consensus 202 ~~~d~v~~k~~~~GGi~~~~~~~~ 225 (265)
T cd03315 202 GAADAVNIKTAKTGGLTKAQRVLA 225 (265)
T ss_pred CCCCEEEEecccccCHHHHHHHHH
Confidence 457777888888876 55555543
No 260
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=86.93 E-value=34 Score=33.92 Aligned_cols=66 Identities=11% Similarity=0.087 Sum_probs=38.5
Q ss_pred cceEEEEee-ccCCChHHHHHHHHHHHHc-CCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccC
Q psy10250 268 IHMKTILAV-GELKTSENIYCASMTAMFA-GSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGI 342 (387)
Q Consensus 268 ~~lKvIlEt-~~L~t~e~i~~a~~ia~~a-GaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGI 342 (387)
..+-+-++. +.|.+-+.+..+.....+. ++|.|=..-+ + |+ .|...++.+....+..+++++-+|.
T Consensus 184 v~is~~~~~~g~l~~G~~~~~~~~~l~~~~~~~~iGiNC~-~-----p~---~~~~~l~~~~~~~~~pl~~~PNaG~ 251 (304)
T PRK09485 184 AWLSFTLRDGTHISDGTPLAEAAALLAASPQVVAVGVNCT-A-----PE---LVTAAIAALRAVTDKPLVVYPNSGE 251 (304)
T ss_pred EEEEEEeCCCCcCCCCCCHHHHHHHHhcCCCceEEEecCC-C-----HH---HHHHHHHHHHhccCCcEEEECCCCC
Confidence 444444443 4554445566676666554 4666543332 1 33 3456777777666678999997764
No 261
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=86.88 E-value=9.2 Score=37.30 Aligned_cols=194 Identities=14% Similarity=0.148 Sum_probs=124.3
Q ss_pred EEeccCCCCHHHHHHHHHHHHHcCCCEEecCCCCCCCCCCCcccccchhccccchhhhhhHHHHHHhhcccccccCCCCC
Q psy10250 64 ILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEFIDLTTLSGDD 143 (387)
Q Consensus 64 IlEt~~L~~~e~i~~a~~~a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ID~T~L~~~~ 143 (387)
++|.|.. +.+ -+..|.++|||=|-=.+....+|-||+....- .+.
T Consensus 3 ~lEvcv~-s~~----~a~~A~~~GAdRiELc~~L~~GGlTPS~g~i~------------------~~~------------ 47 (248)
T PRK11572 3 LLEICCY-SME----CALTAQQAGADRIELCAAPKEGGLTPSLGVLK------------------SVR------------ 47 (248)
T ss_pred eEEEEEC-CHH----HHHHHHHcCCCEEEEccCcCCCCcCCCHHHHH------------------HHH------------
Confidence 5899876 544 34577888999999999988888877733221 111
Q ss_pred CHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEecCCCCCCCCHHHHHH
Q psy10250 144 TEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLH 223 (387)
Q Consensus 144 T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~~e~K~~ 223 (387)
+.. ... --|.|.|.. -+|-....-.+.-..
T Consensus 48 ----------~~~----------------~ip-v~vMIRPR~-----------------------gdF~Ys~~E~~~M~~ 77 (248)
T PRK11572 48 ----------ERV----------------TIP-VHPIIRPRG-----------------------GDFCYSDGEFAAMLE 77 (248)
T ss_pred ----------Hhc----------------CCC-eEEEEecCC-----------------------CCCCCCHHHHHHHHH
Confidence 111 111 237788821 278888888999999
Q ss_pred HHHHHHHCCCCeeeeecCchhhh-cCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEc
Q psy10250 224 EIELLAKQKVDEVDIVIQRSLVL-NNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKT 302 (387)
Q Consensus 224 Ea~~Ai~~GAdEID~Vin~~~lk-~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKT 302 (387)
+++.+.+.|||.+ | +|.|. +|+.|. +=++++.+++++ +++.+=-..=... ...+|.+..++.|.|-|=|
T Consensus 78 di~~~~~~GadGv--V--~G~L~~dg~vD~--~~~~~Li~~a~~---~~vTFHRAfD~~~-d~~~al~~l~~lG~~rILT 147 (248)
T PRK11572 78 DIATVRELGFPGL--V--TGVLDVDGHVDM--PRMRKIMAAAGP---LAVTFHRAFDMCA-NPLNALKQLADLGVARILT 147 (248)
T ss_pred HHHHHHHcCCCEE--E--EeeECCCCCcCH--HHHHHHHHHhcC---CceEEechhhccC-CHHHHHHHHHHcCCCEEEC
Confidence 9999999999974 4 34444 333332 335677777764 5555533221112 2447888899999999999
Q ss_pred CCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCC
Q psy10250 303 STGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNK 366 (387)
Q Consensus 303 STGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~ 366 (387)
|=|... ..+. ++.++.+.+..++++ |-+-|||+.-+ +..++ ..|+.++..
T Consensus 148 SGg~~~----a~~g---~~~L~~lv~~a~~~~-Im~GgGV~~~N-v~~l~-----~tG~~~~H~ 197 (248)
T PRK11572 148 SGQQQD----AEQG---LSLIMELIAASDGPI-IMAGAGVRLSN-LHKFL-----DAGVREVHS 197 (248)
T ss_pred CCCCCC----HHHH---HHHHHHHHHhcCCCE-EEeCCCCCHHH-HHHHH-----HcCCCEEee
Confidence 976432 2221 234556666666666 99999998655 33444 488877743
No 262
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=86.70 E-value=11 Score=36.13 Aligned_cols=70 Identities=16% Similarity=0.059 Sum_probs=44.2
Q ss_pred HHHHHHHHHHcCC-CEEEcCCCCCC--CCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCC
Q psy10250 285 IYCASMTAMFAGS-DFIKTSTGKEK--TNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGP 361 (387)
Q Consensus 285 i~~a~~ia~~aGa-DfVKTSTGf~~--~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga 361 (387)
....++...+.|+ .||=|+-.... .|..++ -++.+.+. +. . +=+||||++.++...+. .+|+
T Consensus 148 ~~e~~~~l~~~g~~~ii~tdI~~dGt~~G~d~e-------l~~~~~~~-~~-~-viasGGv~s~~Dl~~l~-----~~G~ 212 (232)
T PRK13586 148 VIDGIKKVNELELLGIIFTYISNEGTTKGIDYN-------VKDYARLI-RG-L-KEYAGGVSSDADLEYLK-----NVGF 212 (232)
T ss_pred HHHHHHHHHhcCCCEEEEecccccccCcCcCHH-------HHHHHHhC-CC-C-EEEECCCCCHHHHHHHH-----HCCC
Confidence 3355666778887 68888775432 344554 23444333 22 3 55899999999999998 4676
Q ss_pred CccCCCcceeecc
Q psy10250 362 DWLNKDLFRIGAS 374 (387)
Q Consensus 362 ~w~~~~~~RIGtS 374 (387)
+ ..-+|+.
T Consensus 213 ~-----gvivg~A 220 (232)
T PRK13586 213 D-----YIIVGMA 220 (232)
T ss_pred C-----EEEEehh
Confidence 3 3455553
No 263
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=86.67 E-value=7 Score=38.36 Aligned_cols=115 Identities=14% Similarity=0.030 Sum_probs=69.2
Q ss_pred eecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcC-CCEEEc-------CCCCCCC
Q psy10250 238 IVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAG-SDFIKT-------STGKEKT 309 (387)
Q Consensus 238 ~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aG-aDfVKT-------STGf~~~ 309 (387)
..+|.-.+.+.-.+.+.+++....+..+ ..+|+-..-- +.++..++++.+.++| +|+|-- +.|....
T Consensus 64 ~~~n~~g~~~~g~~~~~~~~~~~~~~~~----~p~i~si~g~-~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~ 138 (301)
T PRK07259 64 GMLNAIGLQNPGVDAFIEEELPWLEEFD----TPIIANVAGS-TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAF 138 (301)
T ss_pred ceeecCCCCCcCHHHHHHHHHHHHhccC----CcEEEEeccC-CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCcccc
Confidence 3556544444445667777666543222 3456655444 5788999999999999 999944 3321112
Q ss_pred CCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCcc
Q psy10250 310 NATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 364 (387)
Q Consensus 310 gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~ 364 (387)
+-+++. +.+-++.+++.+.-.+.+|.+..+.+..+....+. ++|++.+
T Consensus 139 ~~~~~~---~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~----~~G~d~i 186 (301)
T PRK07259 139 GTDPEL---AYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAE----EAGADGL 186 (301)
T ss_pred ccCHHH---HHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHH----HcCCCEE
Confidence 233443 34455555666667899999876654444333332 6898765
No 264
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=86.44 E-value=20 Score=32.85 Aligned_cols=107 Identities=20% Similarity=0.334 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCC
Q psy10250 218 LETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGS 297 (387)
Q Consensus 218 ~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGa 297 (387)
.+.=..-++.+++.|++-|.+-.+- ++ ..+.++.+++.+++ +.+=.+.+.+.+++ ..+.++|+
T Consensus 15 ~~~~~~~~~~l~~~G~~~vev~~~~-----~~---~~~~i~~l~~~~~~-----~~iGag~v~~~~~~----~~a~~~Ga 77 (190)
T cd00452 15 AEDALALAEALIEGGIRAIEITLRT-----PG---ALEAIRALRKEFPE-----ALIGAGTVLTPEQA----DAAIAAGA 77 (190)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCC-----hh---HHHHHHHHHHHCCC-----CEEEEEeCCCHHHH----HHHHHcCC
Confidence 3444455788888899988887552 33 33477777765542 34444445455544 66788999
Q ss_pred CEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCcc
Q psy10250 298 DFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 364 (387)
Q Consensus 298 DfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~ 364 (387)
|||-++ |+ ++ ++....+. .+++.-=|+.|.+++...+ .+|+|++
T Consensus 78 ~~i~~p-~~-----~~--------~~~~~~~~----~~~~~i~gv~t~~e~~~A~-----~~Gad~i 121 (190)
T cd00452 78 QFIVSP-GL-----DP--------EVVKAANR----AGIPLLPGVATPTEIMQAL-----ELGADIV 121 (190)
T ss_pred CEEEcC-CC-----CH--------HHHHHHHH----cCCcEECCcCCHHHHHHHH-----HCCCCEE
Confidence 999743 22 22 22223332 2345555999999999998 5899876
No 265
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=86.31 E-value=12 Score=35.73 Aligned_cols=116 Identities=10% Similarity=0.092 Sum_probs=67.2
Q ss_pred HHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcce---EEEEeeccCCChHHHHHHHHHHHHcCCC
Q psy10250 222 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHM---KTILAVGELKTSENIYCASMTAMFAGSD 298 (387)
Q Consensus 222 ~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~l---KvIlEt~~L~t~e~i~~a~~ia~~aGaD 298 (387)
...++.+++.||+- ++++-.+++ +.+.+.+-++++.+.+--...+ ++-. .+...+.......++...+.|++
T Consensus 87 ~edv~~~l~~Ga~k--vviGs~~l~--~p~l~~~i~~~~~~~i~vsld~~~~~v~~-~Gw~~~~~~~~~~~~~l~~~G~~ 161 (241)
T PRK14024 87 DESLEAALATGCAR--VNIGTAALE--NPEWCARVIAEHGDRVAVGLDVRGHTLAA-RGWTRDGGDLWEVLERLDSAGCS 161 (241)
T ss_pred HHHHHHHHHCCCCE--EEECchHhC--CHHHHHHHHHHhhhhEEEEEEEeccEecc-CCeeecCccHHHHHHHHHhcCCC
Confidence 36788889999996 366666665 5666665555554321100112 1111 13222222344566777899999
Q ss_pred EE-EcCC---CCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHH
Q psy10250 299 FI-KTST---GKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWI 352 (387)
Q Consensus 299 fV-KTST---Gf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i 352 (387)
.+ =|+- |.. .|... +.++.+++.+ .+.|=++|||+|.+++..+.
T Consensus 162 ~iiv~~~~~~g~~-~G~d~-------~~i~~i~~~~--~ipviasGGi~s~~D~~~l~ 209 (241)
T PRK14024 162 RYVVTDVTKDGTL-TGPNL-------ELLREVCART--DAPVVASGGVSSLDDLRALA 209 (241)
T ss_pred EEEEEeecCCCCc-cCCCH-------HHHHHHHhhC--CCCEEEeCCCCCHHHHHHHh
Confidence 54 3332 221 23344 3455555543 57788999999999999986
No 266
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=86.06 E-value=8 Score=36.50 Aligned_cols=193 Identities=19% Similarity=0.203 Sum_probs=108.3
Q ss_pred EEEeccCCCCHHHHHHHHHHHHHcCCCEEecCCCCCCCCCCCcccccchhccccchhhhhhHHHHHHhhcccccccCCCC
Q psy10250 63 TILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEFIDLTTLSGD 142 (387)
Q Consensus 63 vIlEt~~L~~~e~i~~a~~~a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ID~T~L~~~ 142 (387)
+++|.|.. +.+. +..|.++|||-|--...+..+|-||+....
T Consensus 1 M~lEvcv~-s~~~----a~~A~~~GAdRiELc~~l~~GGlTPS~g~i--------------------------------- 42 (201)
T PF03932_consen 1 MILEVCVE-SLED----ALAAEAGGADRIELCSNLEVGGLTPSLGLI--------------------------------- 42 (201)
T ss_dssp -EEEEEES-SHHH----HHHHHHTT-SEEEEEBTGGGT-B---HHHH---------------------------------
T ss_pred CeEEEEeC-CHHH----HHHHHHcCCCEEEECCCccCCCcCcCHHHH---------------------------------
Confidence 47888876 5443 445678899999988888888877763211
Q ss_pred CCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEecCCCCCCCCHHHHH
Q psy10250 143 DTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRL 222 (387)
Q Consensus 143 ~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~~e~K~ 222 (387)
+..++ .. +. .--|+|.|.. -+|=....-.+.-.
T Consensus 43 ------~~~~~-~~----------------~i-pv~vMIRpr~-----------------------gdF~Ys~~E~~~M~ 75 (201)
T PF03932_consen 43 ------RQARE-AV----------------DI-PVHVMIRPRG-----------------------GDFVYSDEEIEIMK 75 (201)
T ss_dssp ------HHHHH-HT----------------TS-EEEEE--SSS-----------------------S-S---HHHHHHHH
T ss_pred ------HHHHh-hc----------------CC-ceEEEECCCC-----------------------CCccCCHHHHHHHH
Confidence 11111 11 11 2347777742 14444455566778
Q ss_pred HHHHHHHHCCCCeeeeecCchhhh-cCChhHHHHHHHHHHHHhCCCcceEEEEee--ccCCChHHHHHHHHHHHHcCCCE
Q psy10250 223 HEIELLAKQKVDEVDIVIQRSLVL-NNQWPELFSEVKQMKEKCGEKIHMKTILAV--GELKTSENIYCASMTAMFAGSDF 299 (387)
Q Consensus 223 ~Ea~~Ai~~GAdEID~Vin~~~lk-~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt--~~L~t~e~i~~a~~ia~~aGaDf 299 (387)
.+++.+.+.|||.+=+ |.|. +|..| .+=++++.+++++ +.+.+=- ..+. + ..++-+..++.|.+-
T Consensus 76 ~dI~~~~~~GadG~Vf----G~L~~dg~iD--~~~~~~Li~~a~~---~~~tFHRAfD~~~--d-~~~al~~L~~lG~~r 143 (201)
T PF03932_consen 76 EDIRMLRELGADGFVF----GALTEDGEID--EEALEELIEAAGG---MPVTFHRAFDEVP--D-PEEALEQLIELGFDR 143 (201)
T ss_dssp HHHHHHHHTT-SEEEE------BETTSSB---HHHHHHHHHHHTT---SEEEE-GGGGGSS--T-HHHHHHHHHHHT-SE
T ss_pred HHHHHHHHcCCCeeEE----EeECCCCCcC--HHHHHHHHHhcCC---CeEEEeCcHHHhC--C-HHHHHHHHHhcCCCE
Confidence 8999999999998543 4443 34333 2445666666764 5555543 2332 2 557888888999999
Q ss_pred EEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCcc
Q psy10250 300 IKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 364 (387)
Q Consensus 300 VKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~ 364 (387)
|=||=|..+....+ +.++.+.+..++++.|-+.|||+.-+ +..++. +.|+.|+
T Consensus 144 VLTSGg~~~a~~g~-------~~L~~lv~~a~~~i~Im~GgGv~~~n-v~~l~~----~tg~~~~ 196 (201)
T PF03932_consen 144 VLTSGGAPTALEGI-------ENLKELVEQAKGRIEIMPGGGVRAEN-VPELVE----ETGVREI 196 (201)
T ss_dssp EEESTTSSSTTTCH-------HHHHHHHHHHTTSSEEEEESS--TTT-HHHHHH----HHT-SEE
T ss_pred EECCCCCCCHHHHH-------HHHHHHHHHcCCCcEEEecCCCCHHH-HHHHHH----hhCCeEE
Confidence 99998864333333 35666777778999999999997654 344443 4777543
No 267
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=86.00 E-value=5.6 Score=40.86 Aligned_cols=91 Identities=13% Similarity=0.164 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEc-----CCCCCCCCCChhhhHhHHHHHH
Q psy10250 250 WPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKT-----STGKEKTNATIPAGIIMCSAIK 324 (387)
Q Consensus 250 ~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKT-----STGf~~~gat~~~~~~m~~~v~ 324 (387)
.+.+.+-++++++. . ..+|+=+ ++....+.++.+.++|+|+|-+ ++.|+.....+. .+.
T Consensus 117 p~l~~~iv~~~~~~--~-V~v~vr~------~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~-------~i~ 180 (368)
T PRK08649 117 PELITERIAEIRDA--G-VIVAVSL------SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPL-------NLK 180 (368)
T ss_pred HHHHHHHHHHHHhC--e-EEEEEec------CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHH-------HHH
Confidence 45556666666653 2 4455522 2223345567789999999987 556543222343 233
Q ss_pred HHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCcc
Q psy10250 325 HFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 364 (387)
Q Consensus 325 ~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~ 364 (387)
.+.+.. .+.|=+ |+|.|.++|..++ ++|+|-+
T Consensus 181 ~~ik~~--~ipVIa-G~V~t~e~A~~l~-----~aGAD~V 212 (368)
T PRK08649 181 EFIYEL--DVPVIV-GGCVTYTTALHLM-----RTGAAGV 212 (368)
T ss_pred HHHHHC--CCCEEE-eCCCCHHHHHHHH-----HcCCCEE
Confidence 333333 344533 8999999999999 5899754
No 268
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=85.99 E-value=4.4 Score=40.67 Aligned_cols=78 Identities=19% Similarity=0.232 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCCCEEEcCCCC--------CC--------CCCChh-hhHhHHHHHHHHHHHcCC--CceEeEe------c
Q psy10250 286 YCASMTAMFAGSDFIKTSTGK--------EK--------TNATIP-AGIIMCSAIKHFHKLSGK--KIGLKPA------G 340 (387)
Q Consensus 286 ~~a~~ia~~aGaDfVKTSTGf--------~~--------~gat~~-~~~~m~~~v~~~~~~~~~--~~gIKas------G 340 (387)
.+|++.|.++|.|.|--.-|- ++ .|-+++ -.+..++-|+.+++.+|. .++||.+ |
T Consensus 152 ~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~ 231 (338)
T cd04733 152 AHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRG 231 (338)
T ss_pred HHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCC
Confidence 457888999999999764442 11 233554 445566778888888875 5999998 5
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCccC
Q psy10250 341 GISTFEDSVRWIYLVLIMLGPDWLN 365 (387)
Q Consensus 341 GIrt~~~a~~~i~l~~~~~Ga~w~~ 365 (387)
|. |.++++.++...+ ++|.+|++
T Consensus 232 g~-~~eea~~ia~~Le-~~Gvd~ie 254 (338)
T cd04733 232 GF-TEEDALEVVEALE-EAGVDLVE 254 (338)
T ss_pred CC-CHHHHHHHHHHHH-HcCCCEEE
Confidence 65 7889988887654 46999986
No 269
>PRK01060 endonuclease IV; Provisional
Probab=85.85 E-value=20 Score=34.36 Aligned_cols=128 Identities=12% Similarity=0.103 Sum_probs=74.4
Q ss_pred HHHHHHHHCCCCeeeeecCc-hhhhcCChhHHHHHHHHHHHHhCCCcceE---EEEeeccC----CChH--------HHH
Q psy10250 223 HEIELLAKQKVDEVDIVIQR-SLVLNNQWPELFSEVKQMKEKCGEKIHMK---TILAVGEL----KTSE--------NIY 286 (387)
Q Consensus 223 ~Ea~~Ai~~GAdEID~Vin~-~~lk~g~~~~v~~Ei~~v~~~~~~~~~lK---vIlEt~~L----~t~e--------~i~ 286 (387)
..++.+.+.|.|-+++.+.- ..+..+.+ -.++++++++++.. .-++ +....++. ..++ .+.
T Consensus 16 ~~l~~~~~~G~d~vEl~~~~p~~~~~~~~--~~~~~~~lk~~~~~-~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~ 92 (281)
T PRK01060 16 GAVAEAAEIGANAFMIFTGNPQQWKRKPL--EELNIEAFKAACEK-YGISPEDILVHAPYLINLGNPNKEILEKSRDFLI 92 (281)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCcCCCC--CHHHHHHHHHHHHH-cCCCCCceEEecceEecCCCCCHHHHHHHHHHHH
Confidence 35688889999999997652 22222222 23345556665543 1233 44445442 1122 466
Q ss_pred HHHHHHHHcCCCEEEcCCCCCCCCCChh-hhHhHHHHHHHHHHHc-CCCceEeEecc-----CCCHHHHHHHHH
Q psy10250 287 CASMTAMFAGSDFIKTSTGKEKTNATIP-AGIIMCSAIKHFHKLS-GKKIGLKPAGG-----ISTFEDSVRWIY 353 (387)
Q Consensus 287 ~a~~ia~~aGaDfVKTSTGf~~~gat~~-~~~~m~~~v~~~~~~~-~~~~gIKasGG-----Irt~~~a~~~i~ 353 (387)
+++++|.+.|+.+|..-+|+.....+.+ ....+.+.++.+.+.. +-++.|-.-.+ +.+.++...++.
T Consensus 93 ~~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l~~~~~gv~l~iEn~~~~~~~~~~~~~~~~~l~~ 166 (281)
T PRK01060 93 QEIERCAALGAKLLVFHPGSHLGDIDEEDCLARIAESLNEALDKTQGVTIVLENTAGQGSELGRRFEELARIID 166 (281)
T ss_pred HHHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHHHhcCCCCEEEEecCCCCCCcccCCHHHHHHHHH
Confidence 7889999999999999999743333332 4455555665543221 22334443332 357888888885
No 270
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=85.72 E-value=5.8 Score=40.32 Aligned_cols=117 Identities=19% Similarity=0.221 Sum_probs=70.6
Q ss_pred HHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHc-CCCEEE
Q psy10250 223 HEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFA-GSDFIK 301 (387)
Q Consensus 223 ~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~a-GaDfVK 301 (387)
.++.+|...|||- |+=+-++++ .++++.+.+.|+. .-|-+++|+. +.+|+.+| .++ |++.|=
T Consensus 194 yQI~eAr~~GADA---VLLIaaiL~------~~~L~~l~~~A~~-LGme~LVEVH---~~~ElerA----l~~~ga~iIG 256 (338)
T PLN02460 194 WQIYYARSKGADA---ILLIAAVLP------DLDIKYMLKICKS-LGMAALIEVH---DEREMDRV----LGIEGVELIG 256 (338)
T ss_pred HHHHHHHHcCCCc---HHHHHHhCC------HHHHHHHHHHHHH-cCCeEEEEeC---CHHHHHHH----HhcCCCCEEE
Confidence 5677888888874 444444453 1256666666665 5599999998 45677654 555 888763
Q ss_pred cCCCCCCCC-CChhhhHhHHHHHHHHHH-----HcC-CCceEeEe-ccCCCHHHHHHHHHHHHHhcCCCccCCCcceeec
Q psy10250 302 TSTGKEKTN-ATIPAGIIMCSAIKHFHK-----LSG-KKIGLKPA-GGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGA 373 (387)
Q Consensus 302 TSTGf~~~g-at~~~~~~m~~~v~~~~~-----~~~-~~~gIKas-GGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGt 373 (387)
-.. ++ -|++ +-++.-..+.. ..+ ..+ +.+| +||+|.+|+..+. .+|++ ++.||+
T Consensus 257 INN----RdL~Tf~---vDl~~t~~L~~~~~~~~i~~~~~-~~VsESGI~t~~Dv~~l~-----~~Gad-----AvLVGE 318 (338)
T PLN02460 257 INN----RSLETFE---VDISNTKKLLEGERGEQIREKGI-IVVGESGLFTPDDVAYVQ-----NAGVK-----AVLVGE 318 (338)
T ss_pred EeC----CCCCcce---ECHHHHHHHhhhccccccCCCCe-EEEECCCCCCHHHHHHHH-----HCCCC-----EEEECH
Confidence 211 11 1221 11111222222 222 233 4444 8999999999999 58874 789998
Q ss_pred c
Q psy10250 374 S 374 (387)
Q Consensus 374 S 374 (387)
|
T Consensus 319 s 319 (338)
T PLN02460 319 S 319 (338)
T ss_pred H
Confidence 7
No 271
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=85.54 E-value=6.2 Score=41.68 Aligned_cols=117 Identities=18% Similarity=0.202 Sum_probs=74.1
Q ss_pred HHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEE
Q psy10250 222 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 301 (387)
Q Consensus 222 ~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVK 301 (387)
-.++.+|...|||- |+=+-++++. +++..+.+.++. .-|-+++|+.- .+|+.+ +.++|++.|=
T Consensus 122 ~~QI~ea~~~GADa---vLLI~~~L~~------~~l~~l~~~a~~-lGl~~lvEvh~---~~El~~----al~~~a~iiG 184 (454)
T PRK09427 122 PYQIYLARYYGADA---ILLMLSVLDD------EQYRQLAAVAHS-LNMGVLTEVSN---EEELER----AIALGAKVIG 184 (454)
T ss_pred HHHHHHHHHcCCCc---hhHHHHhCCH------HHHHHHHHHHHH-cCCcEEEEECC---HHHHHH----HHhCCCCEEE
Confidence 46788899999975 4444445542 367777777765 56999999984 466654 5778999873
Q ss_pred cCC-CCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEe-ccCCCHHHHHHHHHHHHHhcCCCccCCCcceeecc
Q psy10250 302 TST-GKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPA-GGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 374 (387)
Q Consensus 302 TST-Gf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKas-GGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtS 374 (387)
-.. .. -|++ +-.+.-..+....+..+ +.+| +||+|.+|+..|. .|+ +.+.||+|
T Consensus 185 iNnRdL----~t~~---vd~~~~~~l~~~ip~~~-~~vseSGI~t~~d~~~~~------~~~-----davLiG~~ 240 (454)
T PRK09427 185 INNRNL----RDLS---IDLNRTRELAPLIPADV-IVISESGIYTHAQVRELS------PFA-----NGFLIGSS 240 (454)
T ss_pred EeCCCC----ccce---ECHHHHHHHHhhCCCCc-EEEEeCCCCCHHHHHHHH------hcC-----CEEEECHH
Confidence 221 11 1222 11122233344556554 4554 8999999998875 245 36899997
No 272
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=85.54 E-value=20 Score=34.39 Aligned_cols=128 Identities=14% Similarity=0.085 Sum_probs=74.8
Q ss_pred HHHHHHHCCCCeeeeecCchh-hhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccC---CC---------hHHHHHHHH
Q psy10250 224 EIELLAKQKVDEVDIVIQRSL-VLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGEL---KT---------SENIYCASM 290 (387)
Q Consensus 224 Ea~~Ai~~GAdEID~Vin~~~-lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L---~t---------~e~i~~a~~ 290 (387)
..+.|.+.|.+-|++-++... ...... -.++++++++.+.....+.+.+..+++ .+ .+...++++
T Consensus 15 ~l~~a~~~G~d~vEl~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~ 92 (279)
T cd00019 15 ALKRAKEIGFDTVAMFLGNPRSWLSRPL--KKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKDEIE 92 (279)
T ss_pred HHHHHHHcCCCEEEEEcCCCCccCCCCC--CHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHHHHH
Confidence 456677889988877665321 111111 124566666655431134455544432 11 134667889
Q ss_pred HHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHc---CCCceEeEeccC-----CCHHHHHHHHH
Q psy10250 291 TAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLS---GKKIGLKPAGGI-----STFEDSVRWIY 353 (387)
Q Consensus 291 ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~---~~~~gIKasGGI-----rt~~~a~~~i~ 353 (387)
+|.+.|+++|-.-.|+.....+.+.-..+.+.++.+.+.. +-++.|-.-++. .|++++..++.
T Consensus 93 ~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~~~~~li~ 163 (279)
T cd00019 93 RCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELKEIID 163 (279)
T ss_pred HHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHHHHHHHHH
Confidence 9999999999987886443223333345556666665542 335555554444 68899999996
No 273
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=85.47 E-value=8.3 Score=37.72 Aligned_cols=118 Identities=20% Similarity=0.278 Sum_probs=74.1
Q ss_pred HHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEE
Q psy10250 222 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 301 (387)
Q Consensus 222 ~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVK 301 (387)
-.++.+|...|||-| +=+-++++ .++++++.+.++. .-+-+++|+.- .+++.+| .++|++.|=
T Consensus 119 ~yQI~~Ar~~GADav---LLI~~~L~------~~~l~el~~~A~~-LGm~~LVEVh~---~eEl~rA----l~~ga~iIG 181 (254)
T COG0134 119 PYQIYEARAAGADAV---LLIVAALD------DEQLEELVDRAHE-LGMEVLVEVHN---EEELERA----LKLGAKIIG 181 (254)
T ss_pred HHHHHHHHHcCcccH---HHHHHhcC------HHHHHHHHHHHHH-cCCeeEEEECC---HHHHHHH----HhCCCCEEE
Confidence 467888889999854 33333332 1346666666655 45899999984 4666554 558999882
Q ss_pred c-CCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEe-ccCCCHHHHHHHHHHHHHhcCCCccCCCcceeecc
Q psy10250 302 T-STGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPA-GGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 374 (387)
Q Consensus 302 T-STGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKas-GGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtS 374 (387)
- +.....--..+ +.-..+....+... +.+| .||.|.+|+..+. ..|++ ++-||+|
T Consensus 182 INnRdL~tf~vdl-------~~t~~la~~~p~~~-~~IsESGI~~~~dv~~l~-----~~ga~-----a~LVG~s 238 (254)
T COG0134 182 INNRDLTTLEVDL-------ETTEKLAPLIPKDV-ILISESGISTPEDVRRLA-----KAGAD-----AFLVGEA 238 (254)
T ss_pred EeCCCcchheecH-------HHHHHHHhhCCCCc-EEEecCCCCCHHHHHHHH-----HcCCC-----EEEecHH
Confidence 1 22221111222 23333444455543 5555 5999999999999 58874 7999998
No 274
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=85.38 E-value=32 Score=35.30 Aligned_cols=201 Identities=13% Similarity=0.097 Sum_probs=103.2
Q ss_pred CCCeeeeecchhHHhc--CChhHHHHHHHHHHHHcccCccEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEecCCCCCCC
Q psy10250 23 KVDEVDIVIQRSLVLN--NQWPELFSEVKQMKEKCEEKIHMKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKT 100 (387)
Q Consensus 23 GA~EiD~Vin~~~lk~--g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~~~e~i~~a~~~a~~ag~dfvKTSTG~~~~ 100 (387)
+..=+|+-++-..++. |. ..-.+-++++...-+..+..-+|==.| | +.++..+.+.-+..+|+||||---+.+.
T Consensus 91 ~~rL~D~~~p~~~~~~f~GP-~~Gi~g~R~~lgv~~rPl~~tiiKP~G-L-~~~~~a~~~~~~~~gGvD~IKdDe~l~~- 166 (364)
T cd08210 91 GIRLVDFELPPSLLRRFPGP-RFGIAGLRALLGIPERPLLCSALKPQG-L-SAAELAELAYAFALGGIDIIKDDHGLAD- 166 (364)
T ss_pred ceEEEEecCCHHHHhcCCCC-CCChHHHHHHhCCCCCceEEEEecccc-C-CHHHHHHHHHHHHhcCCCeeecCccccC-
Confidence 5666788887777764 21 222344455544322222222221225 5 6788888998889999999996544321
Q ss_pred CCCCcccccchhccccchhhhhhHHHHHHhh----c-ccccccCCCCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCC
Q psy10250 101 NATIPADLTRQFEAVDLSRLKNKKSLLLKII----E-FIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVH 175 (387)
Q Consensus 101 gat~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~-~ID~T~L~~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~ 175 (387)
.+ -..| .=|++.+ ....++.. . .+=...+. +..+++.+..+.|. +.|
T Consensus 167 ---~~-~~p~---~eRv~~v---~~av~~a~~eTG~~~~y~~Nit--a~~~em~~ra~~a~----------------~~G 218 (364)
T cd08210 167 ---QP-FAPF---EERVKAC---QEAVAEANAETGGRTLYAPNVT--GPPTQLLERARFAK----------------EAG 218 (364)
T ss_pred ---cc-CCCH---HHHHHHH---HHHHHHHHhhcCCcceEEEecC--CCHHHHHHHHHHHH----------------HcC
Confidence 11 1112 1111111 11111222 1 11112232 33457777777777 678
Q ss_pred eEEEEECCccHHH-HHHHhhhcCCCCCceEEEEecCCCCCCCCHH-------HHHHHHHHHHHCCCCeeeeecCchhhhc
Q psy10250 176 TAAVCVYPARVVD-VIKVLDRENARDDVKVASVAAGFPSGQYLLE-------TRLHEIELLAKQKVDEVDIVIQRSLVLN 247 (387)
Q Consensus 176 ~~aVcV~P~~v~~-a~~~L~~~~~~~~v~v~tVvigFP~G~~~~e-------~K~~Ea~~Ai~~GAdEID~Vin~~~lk~ 247 (387)
..++.|.|...-+ +.+.|.. ..+. + .+ .++|.|..... .-+.-.+.+--.|+|-+ ++-|.+
T Consensus 219 a~~vMv~~~~~G~~~~~~l~~---~~~~-l-~i-~aHra~~ga~~~~~~~is~~~~~~kl~RlaGad~~-~~~~~~---- 287 (364)
T cd08210 219 AGGVLIAPGLTGLDTFRELAE---DFDF-L-PI-LAHPAFAGAFVSSGDGISHALLFGTLFRLAGADAV-IFPNYG---- 287 (364)
T ss_pred CCEEEeecccchHHHHHHHHh---cCCC-c-EE-EEccccccccccCCCcccHHHHHHHHHHHhCCCEE-EeCCCc----
Confidence 8899999886642 2233332 1231 2 22 37765543322 11223444555788865 334442
Q ss_pred CChhHHHHHHHHHHHHhCC
Q psy10250 248 NQWPELFSEVKQMKEKCGE 266 (387)
Q Consensus 248 g~~~~v~~Ei~~v~~~~~~ 266 (387)
|.++.-.+++.++.+.|.+
T Consensus 288 g~~~~~~e~~~~ia~~~~~ 306 (364)
T cd08210 288 GRFGFSREECQAIADACRR 306 (364)
T ss_pred CCccCCHHHHHHHHHHhcC
Confidence 4566666777777766543
No 275
>PRK00915 2-isopropylmalate synthase; Validated
Probab=85.26 E-value=57 Score=34.92 Aligned_cols=105 Identities=15% Similarity=0.114 Sum_probs=70.8
Q ss_pred cCCCCCCCC-HHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHH
Q psy10250 209 AGFPSGQYL-LETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYC 287 (387)
Q Consensus 209 igFP~G~~~-~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~ 287 (387)
.+.|.+.-+ .+.-..-++.+.+.||+.|-+.=-.|.+ ..+.+.+-++.+++..++ .-++.|+...=++...-..
T Consensus 138 f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~---~P~~~~~~i~~l~~~~~~--~~~v~l~~H~HND~GlAvA 212 (513)
T PRK00915 138 FSAEDATRTDLDFLCRVVEAAIDAGATTINIPDTVGYT---TPEEFGELIKTLRERVPN--IDKAIISVHCHNDLGLAVA 212 (513)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCCC---CHHHHHHHHHHHHHhCCC--cccceEEEEecCCCCHHHH
Confidence 377766544 5555555677778899998766556654 467777778888776543 1246788877755444444
Q ss_pred HHHHHHHcCCCEEEcCC-CCC--CCCCChhhhHh
Q psy10250 288 ASMTAMFAGSDFIKTST-GKE--KTNATIPAGII 318 (387)
Q Consensus 288 a~~ia~~aGaDfVKTST-Gf~--~~gat~~~~~~ 318 (387)
-+..|+++||++|-++- |.| .+++.++.+..
T Consensus 213 NslaAv~aGa~~Vd~Tv~GlGERaGNa~lE~vv~ 246 (513)
T PRK00915 213 NSLAAVEAGARQVECTINGIGERAGNAALEEVVM 246 (513)
T ss_pred HHHHHHHhCCCEEEEEeecccccccCccHHHHHH
Confidence 57789999999999876 554 35677765443
No 276
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=85.13 E-value=2.3 Score=40.18 Aligned_cols=121 Identities=17% Similarity=0.216 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHc
Q psy10250 216 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFA 295 (387)
Q Consensus 216 ~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~a 295 (387)
.+.+.-+.+++...+.+- . +++-+..-. +=++.++++...+ ++|=. |..+ +.+|. .+|+++
T Consensus 61 ~~~e~~i~~a~~l~~~~~-~--~~iKIP~T~--------~gl~ai~~L~~~g--i~v~~-T~V~-s~~Qa----~~Aa~A 121 (211)
T cd00956 61 TDAEGMVAEARKLASLGG-N--VVVKIPVTE--------DGLKAIKKLSEEG--IKTNV-TAIF-SAAQA----LLAAKA 121 (211)
T ss_pred CCHHHHHHHHHHHHHhCC-C--EEEEEcCcH--------hHHHHHHHHHHcC--Cceee-EEec-CHHHH----HHHHHc
Confidence 567777888888777632 2 343333211 1233343333222 23222 3344 44544 567889
Q ss_pred CCCEEEcCCCCCC-CCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCcc
Q psy10250 296 GSDFIKTSTGKEK-TNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 364 (387)
Q Consensus 296 GaDfVKTSTGf~~-~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~ 364 (387)
||+||---.|.-. .|- +..-++.++..+.+..+-+.+|-++ |+|+.+++...+ .+|++.+
T Consensus 122 GA~yvsP~vgR~~~~g~---dg~~~i~~i~~~~~~~~~~tkil~A-s~r~~~ei~~a~-----~~Gad~v 182 (211)
T cd00956 122 GATYVSPFVGRIDDLGG---DGMELIREIRTIFDNYGFDTKILAA-SIRNPQHVIEAA-----LAGADAI 182 (211)
T ss_pred CCCEEEEecChHhhcCC---CHHHHHHHHHHHHHHcCCCceEEec-ccCCHHHHHHHH-----HcCCCEE
Confidence 9999876667521 111 1112234455555555556666664 899999999988 5898643
No 277
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=85.07 E-value=6.5 Score=37.90 Aligned_cols=153 Identities=16% Similarity=0.170 Sum_probs=83.1
Q ss_pred CCeEEEEECCcc------HHHHHHHhhhcCCCCCceEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhc
Q psy10250 174 VHTAAVCVYPAR------VVDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLN 247 (387)
Q Consensus 174 ~~~~aVcV~P~~------v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~ 247 (387)
-|+.++.|--+. +....+.++. +++++ + =||.+..... .+ .|.++=.+.|.+
T Consensus 31 ~gtdai~vGGS~~vt~~~~~~~v~~ik~----~~lPv--i--lfp~~~~~i~-----------~~---aDa~l~~svlNs 88 (232)
T PRK04169 31 SGTDAIIVGGSDGVTEENVDELVKAIKE----YDLPV--I--LFPGNIEGIS-----------PG---ADAYLFPSVLNS 88 (232)
T ss_pred cCCCEEEEcCCCccchHHHHHHHHHHhc----CCCCE--E--EeCCCccccC-----------cC---CCEEEEEEEecC
Confidence 456677776655 3334444542 34443 3 4898765532 23 556666677778
Q ss_pred CChhHHH-HHHHHHHHH-------h-------CCCcceEEEEeeccCC-ChHHHHHHHHHH-HHcCCC--EEEcCCCCCC
Q psy10250 248 NQWPELF-SEVKQMKEK-------C-------GEKIHMKTILAVGELK-TSENIYCASMTA-MFAGSD--FIKTSTGKEK 308 (387)
Q Consensus 248 g~~~~v~-~Ei~~v~~~-------~-------~~~~~lKvIlEt~~L~-t~e~i~~a~~ia-~~aGaD--fVKTSTGf~~ 308 (387)
+|..++. ..+..+... . +++..+-.+..+...+ +.+++..++.+| ..-|-. |+..|.|++
T Consensus 89 ~~~~~iig~~~~~~~~~~~~~le~ip~gYiv~~~~~~va~~~~~~~~~~~~~~~~~~~~lA~~~~g~~~vYle~gs~~g- 167 (232)
T PRK04169 89 RNPYWIIGAHVEAAPIIKKGGLEVIPEGYIVLNPGSKVAVVGTAAPIPLDKPDIAAYAALAAEYLGMPIVYLEYGGGAG- 167 (232)
T ss_pred CCcchHhhHHHHHHHHHhhcCcEECceEEEEECCCCeeeeeeccccCCCChHHHHHHHHHHHHHcCCCeEEEECCCCCC-
Confidence 8877763 334444332 1 0111111112222221 445666555555 445766 555555542
Q ss_pred CCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 309 TNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 309 ~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
.+..++ .|+.+++.++. ..|=+-||||+.+++.+++ .+|++
T Consensus 168 ~~~~~e-------~I~~v~~~~~~-~pvivGGGIrs~e~a~~~l-----~~GAD 208 (232)
T PRK04169 168 DPVPPE-------MVKAVKKALDI-TPLIYGGGIRSPEQARELM-----AAGAD 208 (232)
T ss_pred CCCCHH-------HHHHHHHhcCC-CcEEEECCCCCHHHHHHHH-----HhCCC
Confidence 334443 45555555433 2566789999999999988 48884
No 278
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=84.99 E-value=39 Score=34.50 Aligned_cols=121 Identities=13% Similarity=0.019 Sum_probs=72.5
Q ss_pred HHHHHHHHCCCCeeeeecCchhhhcCC-------------------hhHHHHHHHHHHHHhCCC-cceEEEEe-------
Q psy10250 223 HEIELLAKQKVDEVDIVIQRSLVLNNQ-------------------WPELFSEVKQMKEKCGEK-IHMKTILA------- 275 (387)
Q Consensus 223 ~Ea~~Ai~~GAdEID~Vin~~~lk~g~-------------------~~~v~~Ei~~v~~~~~~~-~~lKvIlE------- 275 (387)
..|+.|.+.|.|-|.+=.--|+|.+.- ...+.+=+.+|++++++. +-+|+--+
T Consensus 163 ~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~ 242 (362)
T PRK10605 163 QAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVD 242 (362)
T ss_pred HHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCC
Confidence 347788999999999865544433211 133445667888888753 23443221
Q ss_pred eccCCChHH-HHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHH
Q psy10250 276 VGELKTSEN-IYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 353 (387)
Q Consensus 276 t~~L~t~e~-i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~ 353 (387)
.+ + +.++ -...++...+.|.|||-.|.|....+.... ..-.+.+++.++ +.|=+.|++ |+++|...+.
T Consensus 243 ~G-~-~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~~~-----~~~~~~ik~~~~--~pv~~~G~~-~~~~ae~~i~ 311 (362)
T PRK10605 243 NG-P-NEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYS-----DAFREKVRARFH--GVIIGAGAY-TAEKAETLIG 311 (362)
T ss_pred CC-C-CHHHHHHHHHHHHHHcCCCEEEeccccccCCcccc-----HHHHHHHHHHCC--CCEEEeCCC-CHHHHHHHHH
Confidence 12 3 3445 456777778899999999986321111111 112244555554 345567775 9999999994
No 279
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=84.91 E-value=7 Score=40.21 Aligned_cols=92 Identities=13% Similarity=0.188 Sum_probs=56.8
Q ss_pred ChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcC-----CCCCCCCCChhhhHhHHHHH
Q psy10250 249 QWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTS-----TGKEKTNATIPAGIIMCSAI 323 (387)
Q Consensus 249 ~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTS-----TGf~~~gat~~~~~~m~~~v 323 (387)
+.+.+.+=+++++++. +.+|+=+ +++...+.++.++++|+|+|-.. -.|..+.+.+. ++
T Consensus 117 ~p~l~~~ii~~vr~a~---VtvkiRl------~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~-------~l 180 (369)
T TIGR01304 117 KPELLGERIAEVRDSG---VITAVRV------SPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPL-------NL 180 (369)
T ss_pred ChHHHHHHHHHHHhcc---eEEEEec------CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHH-------HH
Confidence 4566677777777642 4555544 12334456788999999999742 22312223343 44
Q ss_pred HHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCcc
Q psy10250 324 KHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 364 (387)
Q Consensus 324 ~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~ 364 (387)
..+.+..+ +.|= +|||.|.++|..++ ..|+|-+
T Consensus 181 ~~~i~~~~--IPVI-~G~V~t~e~A~~~~-----~aGaDgV 213 (369)
T TIGR01304 181 KEFIGELD--VPVI-AGGVNDYTTALHLM-----RTGAAGV 213 (369)
T ss_pred HHHHHHCC--CCEE-EeCCCCHHHHHHHH-----HcCCCEE
Confidence 55544433 3332 48999999999999 5899754
No 280
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=84.68 E-value=15 Score=37.21 Aligned_cols=85 Identities=20% Similarity=0.221 Sum_probs=57.4
Q ss_pred cCCChHHHHH-------HHHHHHHcCCCEEEcCCCC--------CC--------CCCChh-hhHhHHHHHHHHHHHcCCC
Q psy10250 278 ELKTSENIYC-------ASMTAMFAGSDFIKTSTGK--------EK--------TNATIP-AGIIMCSAIKHFHKLSGKK 333 (387)
Q Consensus 278 ~L~t~e~i~~-------a~~ia~~aGaDfVKTSTGf--------~~--------~gat~~-~~~~m~~~v~~~~~~~~~~ 333 (387)
.| |.|+|.. |++.|.++|.|.|.--.|. ++ .|-+++ -.+..++-|+.+++.++..
T Consensus 131 ~m-t~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~ 209 (337)
T PRK13523 131 EM-TKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGP 209 (337)
T ss_pred cC-CHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 46 4566654 6788999999999765552 11 133444 3455556667777777778
Q ss_pred ceEeEec------cCCCHHHHHHHHHHHHHhcCCCccC
Q psy10250 334 IGLKPAG------GISTFEDSVRWIYLVLIMLGPDWLN 365 (387)
Q Consensus 334 ~gIKasG------GIrt~~~a~~~i~l~~~~~Ga~w~~ 365 (387)
++||.+. |+ +.+++..+....+ ..|.||++
T Consensus 210 v~vRis~~d~~~~G~-~~~e~~~i~~~l~-~~gvD~i~ 245 (337)
T PRK13523 210 LFVRISASDYHPGGL-TVQDYVQYAKWMK-EQGVDLID 245 (337)
T ss_pred eEEEecccccCCCCC-CHHHHHHHHHHHH-HcCCCEEE
Confidence 9999986 43 6888888876654 46888773
No 281
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=83.97 E-value=71 Score=34.96 Aligned_cols=191 Identities=24% Similarity=0.234 Sum_probs=100.9
Q ss_pred eccCCCCHHHHHHHHHHHHHcCCCEEecCCCCCCCCCCCcccccchhccccchhhhhhHHHHHHhhcccccccCCCCCCH
Q psy10250 66 AVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEFIDLTTLSGDDTE 145 (387)
Q Consensus 66 Et~~L~~~e~i~~a~~~a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ID~T~L~~~~T~ 145 (387)
|.-.|.+++.++..-+--.+||+|.|.|+| |+ +++. + +.+ +. ..
T Consensus 35 ~~~~l~~Pe~i~~vH~~yl~AGAdvi~TnT-y~---as~~----~------l~~----------------~g------~~ 78 (612)
T PRK08645 35 EELNLSHPELILRIHREYIEAGADVIQTNT-FG---ANRI----K------LKR----------------YG------LE 78 (612)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCEEecCc-cc---ccHH----H------HHh----------------cC------ch
Confidence 666677888888888888999999999999 64 3221 1 000 00 12
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEecC-----CCCCCCCHHH
Q psy10250 146 AVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAG-----FPSGQYLLET 220 (387)
Q Consensus 146 ~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvig-----FP~G~~~~e~ 220 (387)
++++++.+.|+ ++|++.-+ .++.|+.- +| -|.|..+.+.
T Consensus 79 ~~~~~l~~~av------------------------------~lAr~a~~-----~~~~Vags-iGP~g~~~~~~~~~~~~ 122 (612)
T PRK08645 79 DKVKEINRAAV------------------------------RLAREAAG-----DDVYVAGT-IGPIGGRGPLGDISLEE 122 (612)
T ss_pred HHHHHHHHHHH------------------------------HHHHHHhc-----CCCeEEEe-CCCCCCCCCCCCCCHHH
Confidence 55677777776 23333221 13556666 35 1333333222
Q ss_pred HHHH----HHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEee-ccCCChHHHHHHHHHHHHc
Q psy10250 221 RLHE----IELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAV-GELKTSENIYCASMTAMFA 295 (387)
Q Consensus 221 K~~E----a~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt-~~L~t~e~i~~a~~ia~~a 295 (387)
-... ++...+.| +|+++--.. -+.++++--+..+++..+-+..+-+=++. +.|.+-+.+..++..+...
T Consensus 123 ~~~~~~~~~~~l~~~g---vD~l~~ET~---~~~~Ea~a~~~a~~~~~~~p~~~Sf~~~~~g~l~~G~~~~~~~~~~~~~ 196 (612)
T PRK08645 123 IRREFREQIDALLEEG---VDGLLLETF---YDLEELLLALEAAREKTDLPIIAQVAFHEDGVTQNGTSLEEALKELVAA 196 (612)
T ss_pred HHHHHHHHHHHHHhcC---CCEEEEEcc---CCHHHHHHHHHHHHHhCCCcEEEEEEECCCCeeCCCCCHHHHHHHHHhC
Confidence 2221 34444556 445432110 12333333333333322112334444432 4555556677777777777
Q ss_pred CCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccC
Q psy10250 296 GSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGI 342 (387)
Q Consensus 296 GaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGI 342 (387)
|++.|=...+-+ ++ .|...++.+...+...+++++-.|.
T Consensus 197 ~~~avGiNC~~~-----p~---~~~~~l~~l~~~~~~pl~vypNaG~ 235 (612)
T PRK08645 197 GADVVGLNCGLG-----PY---HMLEALERIPIPENAPLSAYPNAGL 235 (612)
T ss_pred CCCEEEecCCCC-----HH---HHHHHHHHHHhccCceEEEEECCCC
Confidence 877653332211 33 2445666666555678999998887
No 282
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=83.87 E-value=20 Score=34.99 Aligned_cols=109 Identities=17% Similarity=0.155 Sum_probs=62.1
Q ss_pred HHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEE--Ec
Q psy10250 225 IELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI--KT 302 (387)
Q Consensus 225 a~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfV--KT 302 (387)
.++|.+.|+|-+=+ +++. .+|+..+++.|.. .-+..|.=.+--++++.+.+.+.. ..+|| -+
T Consensus 110 ~~~~~~aGvdGvii-pDLp----------~ee~~~~~~~~~~-~gl~~I~lvap~t~~eri~~i~~~----s~gfIY~vs 173 (258)
T PRK13111 110 AADAAEAGVDGLII-PDLP----------PEEAEELRAAAKK-HGLDLIFLVAPTTTDERLKKIASH----ASGFVYYVS 173 (258)
T ss_pred HHHHHHcCCcEEEE-CCCC----------HHHHHHHHHHHHH-cCCcEEEEeCCCCCHHHHHHHHHh----CCCcEEEEe
Confidence 56777778888644 3332 3688888888864 346666533333244545443333 34455 45
Q ss_pred CCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHH
Q psy10250 303 STGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 353 (387)
Q Consensus 303 STGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~ 353 (387)
..|-. |.+...-..+.+.++.+++.. .+.|=+-|||++.+++.++..
T Consensus 174 ~~GvT--G~~~~~~~~~~~~i~~vk~~~--~~pv~vGfGI~~~e~v~~~~~ 220 (258)
T PRK13111 174 RAGVT--GARSADAADLAELVARLKAHT--DLPVAVGFGISTPEQAAAIAA 220 (258)
T ss_pred CCCCC--CcccCCCccHHHHHHHHHhcC--CCcEEEEcccCCHHHHHHHHH
Confidence 54432 111111111224566666654 355667889999999999984
No 283
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=83.51 E-value=9.6 Score=37.13 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=61.9
Q ss_pred HHHHHHHHHHcCCCeeeeecchhHH-----hcCChhHHHHHHHHHHHHccc-CccEEEEEeccCCCCHHHHHHHHHHHHH
Q psy10250 12 RLHEIELLAKQKVDEVDIVIQRSLV-----LNNQWPELFSEVKQMKEKCEE-KIHMKTILAVGELKTSENIYYASMTAMF 85 (387)
Q Consensus 12 K~~E~~~a~~~GA~EiD~Vin~~~l-----k~g~~~~v~~ei~~v~~~~~~-~~~~KvIlEt~~L~~~e~i~~a~~~a~~ 85 (387)
....++.|++.|++.|.+++..+.. ....+++..+.+..+++.++. +..+-+-+|...-.+.+.+...++.+.+
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~ 152 (262)
T cd07948 73 HMDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDK 152 (262)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHH
Confidence 4457889999999999999876532 234567888888888877653 4678888998877677888888999999
Q ss_pred cCCCE
Q psy10250 86 AGSDF 90 (387)
Q Consensus 86 ag~df 90 (387)
+|+|-
T Consensus 153 ~g~~~ 157 (262)
T cd07948 153 LGVNR 157 (262)
T ss_pred cCCCE
Confidence 99985
No 284
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=83.32 E-value=6.3 Score=39.81 Aligned_cols=83 Identities=19% Similarity=0.172 Sum_probs=55.0
Q ss_pred HHHHHHHcCCCeeeeecchh----HHhcC---------------ChhHHHHHHHHHHHHcccCccEEEEEec-----cCC
Q psy10250 15 EIELLAKQKVDEVDIVIQRS----LVLNN---------------QWPELFSEVKQMKEKCEEKIHMKTILAV-----GEL 70 (387)
Q Consensus 15 E~~~a~~~GA~EiD~Vin~~----~lk~g---------------~~~~v~~ei~~v~~~~~~~~~~KvIlEt-----~~L 70 (387)
.|+.|.+.|.|-|++-.--| .++|- +...+.+=+++|+++++.+.++++=|-. +-+
T Consensus 142 aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~ 221 (353)
T cd02930 142 CAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGS 221 (353)
T ss_pred HHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCC
Confidence 46678889999999954211 12221 2456667778888888755445443321 113
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecCCCCC
Q psy10250 71 KTSENIYYASMTAMFAGSDFIKTSTGKE 98 (387)
Q Consensus 71 ~~~e~i~~a~~~a~~ag~dfvKTSTG~~ 98 (387)
+.++-.+.++...++|+|||-.|.||-
T Consensus 222 -~~~e~~~i~~~Le~~G~d~i~vs~g~~ 248 (353)
T cd02930 222 -TWEEVVALAKALEAAGADILNTGIGWH 248 (353)
T ss_pred -CHHHHHHHHHHHHHcCCCEEEeCCCcC
Confidence 556667788888899999999999973
No 285
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=83.30 E-value=47 Score=32.34 Aligned_cols=145 Identities=14% Similarity=0.169 Sum_probs=89.0
Q ss_pred CceEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCC
Q psy10250 201 DVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELK 280 (387)
Q Consensus 201 ~v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~ 280 (387)
+.++++.+ =|.. .-....+.|.+.|.+-|-+..... +.+.+.+-++..++ .+..+-+=+|...-.
T Consensus 71 ~~~~~~~~--~~~~-----~~~~~l~~a~~~gv~~iri~~~~~-----~~~~~~~~i~~ak~---~G~~v~~~~~~a~~~ 135 (266)
T cd07944 71 NTKIAVMV--DYGN-----DDIDLLEPASGSVVDMIRVAFHKH-----EFDEALPLIKAIKE---KGYEVFFNLMAISGY 135 (266)
T ss_pred CCEEEEEE--CCCC-----CCHHHHHHHhcCCcCEEEEecccc-----cHHHHHHHHHHHHH---CCCeEEEEEEeecCC
Confidence 56776663 2221 124467778888988877765442 34444444444433 124566777777666
Q ss_pred ChHHHHHHHHHHHHcCCCEE--EcCCCCCCCCCChhhhHhHHHHHHHHHHHcC--CCceEeEeccCCCHH----HHHHHH
Q psy10250 281 TSENIYCASMTAMFAGSDFI--KTSTGKEKTNATIPAGIIMCSAIKHFHKLSG--KKIGLKPAGGISTFE----DSVRWI 352 (387)
Q Consensus 281 t~e~i~~a~~ia~~aGaDfV--KTSTGf~~~gat~~~~~~m~~~v~~~~~~~~--~~~gIKasGGIrt~~----~a~~~i 352 (387)
+++.+.+.++.+.++|+|-| +=++| .++|+.+..++..+ ++..+ -.+++..= .|+- .++.-+
T Consensus 136 ~~~~~~~~~~~~~~~g~~~i~l~DT~G----~~~P~~v~~lv~~l---~~~~~~~~~i~~H~H---n~~Gla~AN~laA~ 205 (266)
T cd07944 136 SDEELLELLELVNEIKPDVFYIVDSFG----SMYPEDIKRIISLL---RSNLDKDIKLGFHAH---NNLQLALANTLEAI 205 (266)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCCC----CCCHHHHHHHHHHH---HHhcCCCceEEEEeC---CCccHHHHHHHHHH
Confidence 78899999999999999965 55666 47888776655444 44555 23433331 2222 233333
Q ss_pred HHHHHhcCCCccCCCcceeeccc
Q psy10250 353 YLVLIMLGPDWLNKDLFRIGASS 375 (387)
Q Consensus 353 ~l~~~~~Ga~w~~~~~~RIGtSs 375 (387)
++|++|++....=||-.+
T Consensus 206 -----~aGa~~vd~s~~G~G~~a 223 (266)
T cd07944 206 -----ELGVEIIDATVYGMGRGA 223 (266)
T ss_pred -----HcCCCEEEEecccCCCCc
Confidence 699999888888787754
No 286
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=83.23 E-value=19 Score=38.37 Aligned_cols=74 Identities=19% Similarity=0.274 Sum_probs=51.5
Q ss_pred HHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHcccCccEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEe
Q psy10250 13 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGELKTSENIYYASMTAMFAGSDFIK 92 (387)
Q Consensus 13 ~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~~~e~i~~a~~~a~~ag~dfvK 92 (387)
...++..++.|+|- +++|.. .|+.....+-++.+++..+ .+++|.=+ ..|.+. ++.++++|+||||
T Consensus 243 ~~~~~~l~~ag~d~--i~id~a---~G~s~~~~~~i~~ik~~~~---~~~v~aG~--V~t~~~----a~~~~~aGad~I~ 308 (495)
T PTZ00314 243 IERAAALIEAGVDV--LVVDSS---QGNSIYQIDMIKKLKSNYP---HVDIIAGN--VVTADQ----AKNLIDAGADGLR 308 (495)
T ss_pred HHHHHHHHHCCCCE--EEEecC---CCCchHHHHHHHHHHhhCC---CceEEECC--cCCHHH----HHHHHHcCCCEEE
Confidence 67788899999988 445553 6777777777888886543 26777743 336443 4466789999999
Q ss_pred cCCCCCCC
Q psy10250 93 TSTGKEKT 100 (387)
Q Consensus 93 TSTG~~~~ 100 (387)
.+-|-++.
T Consensus 309 vg~g~Gs~ 316 (495)
T PTZ00314 309 IGMGSGSI 316 (495)
T ss_pred ECCcCCcc
Confidence 87664443
No 287
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=83.11 E-value=10 Score=37.34 Aligned_cols=83 Identities=12% Similarity=0.148 Sum_probs=61.3
Q ss_pred HHHHHHHcCCCeeeeecchhHHh-----cCChhHHHHHHHHHHHHccc-CccEEEEEec---cCCCCHHHHHHHHHHHHH
Q psy10250 15 EIELLAKQKVDEVDIVIQRSLVL-----NNQWPELFSEVKQMKEKCEE-KIHMKTILAV---GELKTSENIYYASMTAMF 85 (387)
Q Consensus 15 E~~~a~~~GA~EiD~Vin~~~lk-----~g~~~~v~~ei~~v~~~~~~-~~~~KvIlEt---~~L~~~e~i~~a~~~a~~ 85 (387)
.++.|++.|+++|.+++..+... ....++..+++..+++.++. +..+-+-+|. +|-.+.+.+.+.++.+.+
T Consensus 79 ~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~ 158 (280)
T cd07945 79 SVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSD 158 (280)
T ss_pred HHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHH
Confidence 57788999999999998554332 24678888899998887763 4567777885 333367888889999999
Q ss_pred cCCCEE--ecCCCC
Q psy10250 86 AGSDFI--KTSTGK 97 (387)
Q Consensus 86 ag~dfv--KTSTG~ 97 (387)
+|+|-| +-++|.
T Consensus 159 ~G~~~i~l~DT~G~ 172 (280)
T cd07945 159 LPIKRIMLPDTLGI 172 (280)
T ss_pred cCCCEEEecCCCCC
Confidence 999974 444443
No 288
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=82.87 E-value=13 Score=35.69 Aligned_cols=120 Identities=15% Similarity=0.139 Sum_probs=68.2
Q ss_pred CCCeEEEEECC--------------ccHHHHHHHhhhcCCCCCceEEEEecC----CCCCCCCHHHHH-------HHHHH
Q psy10250 173 NVHTAAVCVYP--------------ARVVDVIKVLDRENARDDVKVASVAAG----FPSGQYLLETRL-------HEIEL 227 (387)
Q Consensus 173 ~~~~~aVcV~P--------------~~v~~a~~~L~~~~~~~~v~v~tVvig----FP~G~~~~e~K~-------~Ea~~ 227 (387)
+.||.+|-+.+ ..+...++.++. ++++|+++..+ ||++....+.+. .-++.
T Consensus 32 ~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~ 107 (283)
T PRK13209 32 TAGFDFVEMSVDESDERLARLDWSREQRLALVNALVE----TGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRKAIQL 107 (283)
T ss_pred HcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHH----cCCceeEEecccccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 56777777753 235566777765 68988776322 555654433321 23467
Q ss_pred HHHCCCCeeeeecCchhh-----hcCChhHHHHHHHHHHHHhCCCcceEEEEeec---cCCChHHHHHHHHHHHHcCCCE
Q psy10250 228 LAKQKVDEVDIVIQRSLV-----LNNQWPELFSEVKQMKEKCGEKIHMKTILAVG---ELKTSENIYCASMTAMFAGSDF 299 (387)
Q Consensus 228 Ai~~GAdEID~Vin~~~l-----k~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~---~L~t~e~i~~a~~ia~~aGaDf 299 (387)
|.+.|+.-|= +.-... ....|+.+.+.++.+.+.+.. .-+++.+|+. .+.+ ...+.+++.+.|.+.
T Consensus 108 a~~lG~~~i~--~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~-~GV~i~iE~~~~~~~~~---~~~~~~ll~~v~~~~ 181 (283)
T PRK13209 108 AQDLGIRVIQ--LAGYDVYYEQANNETRRRFIDGLKESVELASR-ASVTLAFEIMDTPFMNS---ISKALGYAHYLNSPW 181 (283)
T ss_pred HHHcCCCEEE--ECCccccccccHHHHHHHHHHHHHHHHHHHHH-hCCEEEEeecCCcccCC---HHHHHHHHHHhCCCc
Confidence 7788999663 221100 111234445566777666654 3589999984 3433 334556666666665
Q ss_pred EEc
Q psy10250 300 IKT 302 (387)
Q Consensus 300 VKT 302 (387)
++-
T Consensus 182 lgl 184 (283)
T PRK13209 182 FQL 184 (283)
T ss_pred cce
Confidence 554
No 289
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=82.86 E-value=5.4 Score=42.62 Aligned_cols=65 Identities=12% Similarity=0.124 Sum_probs=47.7
Q ss_pred HHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCcc
Q psy10250 287 CASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 364 (387)
Q Consensus 287 ~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~ 364 (387)
.-++...++|+|+|--. ..+|.+ ..+++.|+.+++..++++.|++ |-|-|.++|..++ .+|++++
T Consensus 245 ~ra~~Lv~aGvd~i~vd---~a~g~~----~~~~~~i~~ir~~~~~~~~V~a-GnV~t~e~a~~li-----~aGAd~I 309 (502)
T PRK07107 245 ERVPALVEAGADVLCID---SSEGYS----EWQKRTLDWIREKYGDSVKVGA-GNVVDREGFRYLA-----EAGADFV 309 (502)
T ss_pred HHHHHHHHhCCCeEeec---Cccccc----HHHHHHHHHHHHhCCCCceEEe-ccccCHHHHHHHH-----HcCCCEE
Confidence 34566888999999743 122222 2234788888888876777877 9999999999999 5999864
No 290
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=82.84 E-value=12 Score=34.68 Aligned_cols=86 Identities=14% Similarity=0.084 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeeeeecc----------hhHHhcCChhHHHHHHHHHHHHcccCccEEEEEeccCCCCHHHH
Q psy10250 7 YLLETRLHEIELLAKQKVDEVDIVIQ----------RSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGELKTSENI 76 (387)
Q Consensus 7 ~~~~~K~~E~~~a~~~GA~EiD~Vin----------~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~~~e~i 76 (387)
...+.=...++.+.+.|+|.||+=+- +|....++.+.+.+-++++++.++-.+.+|+ -.+.- .+++.
T Consensus 64 ~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~--r~~~~-~~~~~ 140 (231)
T cd02801 64 SDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKI--RLGWD-DEEET 140 (231)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEE--eeccC-CchHH
Confidence 33444455667777789999987321 2334445788888999999887763234454 44432 22366
Q ss_pred HHHHHHHHHcCCCEEecCC
Q psy10250 77 YYASMTAMFAGSDFIKTST 95 (387)
Q Consensus 77 ~~a~~~a~~ag~dfvKTST 95 (387)
...++.+.++|+|||.-+.
T Consensus 141 ~~~~~~l~~~Gvd~i~v~~ 159 (231)
T cd02801 141 LELAKALEDAGASALTVHG 159 (231)
T ss_pred HHHHHHHHHhCCCEEEECC
Confidence 7778888899999996443
No 291
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=82.73 E-value=33 Score=32.97 Aligned_cols=120 Identities=11% Similarity=0.092 Sum_probs=69.2
Q ss_pred CCCeEEEEECCc--------------cHHHHHHHhhhcCCCCCceEEEEec----CCCCCCCCHHHHH-------HHHHH
Q psy10250 173 NVHTAAVCVYPA--------------RVVDVIKVLDRENARDDVKVASVAA----GFPSGQYLLETRL-------HEIEL 227 (387)
Q Consensus 173 ~~~~~aVcV~P~--------------~v~~a~~~L~~~~~~~~v~v~tVvi----gFP~G~~~~e~K~-------~Ea~~ 227 (387)
++||.+|=+.+. .....++.|+. .+++|+++.. .||++....+... .-++.
T Consensus 27 ~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~ 102 (279)
T TIGR00542 27 TCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIE----TGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIMEKAIQL 102 (279)
T ss_pred HcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHH----cCCCceeeecCCCccCcCCCcCHHHHHHHHHHHHHHHHH
Confidence 567777755422 23445666664 6888887632 2566664444332 33556
Q ss_pred HHHCCCCeeeeecCchhhhcC-C----hhHHHHHHHHHHHHhCCCcceEEEEee---ccCCChHHHHHHHHHHHHcCCCE
Q psy10250 228 LAKQKVDEVDIVIQRSLVLNN-Q----WPELFSEVKQMKEKCGEKIHMKTILAV---GELKTSENIYCASMTAMFAGSDF 299 (387)
Q Consensus 228 Ai~~GAdEID~Vin~~~lk~g-~----~~~v~~Ei~~v~~~~~~~~~lKvIlEt---~~L~t~e~i~~a~~ia~~aGaDf 299 (387)
|.+.|++-| +++-.....+ + |+.+.+-++++.+.+.. .-+++-||+ ..+.+. ..+.++..+.|.+.
T Consensus 103 a~~lG~~~v--~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~-~Gv~l~lE~~~~~~~~t~---~~~~~li~~v~~~~ 176 (279)
T TIGR00542 103 ARDLGIRTI--QLAGYDVYYEEHDEETRRRFREGLKEAVELAAR-AQVTLAVEIMDTPFMSSI---SKWLKWDHYLNSPW 176 (279)
T ss_pred HHHhCCCEE--EecCcccccCcCCHHHHHHHHHHHHHHHHHHHH-cCCEEEEeeCCCchhcCH---HHHHHHHHHcCCCc
Confidence 777899876 3332211111 1 45555666666666654 358999997 455443 34455666667777
Q ss_pred EEc
Q psy10250 300 IKT 302 (387)
Q Consensus 300 VKT 302 (387)
++-
T Consensus 177 v~~ 179 (279)
T TIGR00542 177 FTL 179 (279)
T ss_pred eEE
Confidence 776
No 292
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=82.51 E-value=60 Score=33.03 Aligned_cols=99 Identities=13% Similarity=0.122 Sum_probs=64.9
Q ss_pred cCCCCCCCC-HHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHH
Q psy10250 209 AGFPSGQYL-LETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYC 287 (387)
Q Consensus 209 igFP~G~~~-~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~ 287 (387)
++++.+..+ .+.=+.-++.+.+.||+.|-+.=-.|.+ ..+.+.+-++.+++.. ++-|+...=++.-.=..
T Consensus 131 ~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G~~---~P~~v~~lv~~l~~~~------~v~l~~H~HNd~GlA~A 201 (365)
T TIGR02660 131 VGGEDASRADPDFLVELAEVAAEAGADRFRFADTVGIL---DPFSTYELVRALRQAV------DLPLEMHAHNDLGMATA 201 (365)
T ss_pred EeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcccCCCC---CHHHHHHHHHHHHHhc------CCeEEEEecCCCChHHH
Confidence 378877655 4555555677778899998665445543 4667777777776533 34567766655444444
Q ss_pred HHHHHHHcCCCEEEcCC-CCC--CCCCChhhh
Q psy10250 288 ASMTAMFAGSDFIKTST-GKE--KTNATIPAG 316 (387)
Q Consensus 288 a~~ia~~aGaDfVKTST-Gf~--~~gat~~~~ 316 (387)
-+..|+++||++|-+|- |.| .+++.+|.+
T Consensus 202 NalaA~~aGa~~vd~tl~GiGeraGN~~lE~l 233 (365)
T TIGR02660 202 NTLAAVRAGATHVNTTVNGLGERAGNAALEEV 233 (365)
T ss_pred HHHHHHHhCCCEEEEEeeccccccccCCHHHH
Confidence 56779999999999876 454 356777643
No 293
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=82.49 E-value=9.2 Score=39.14 Aligned_cols=103 Identities=26% Similarity=0.302 Sum_probs=66.3
Q ss_pred CChhHHHHHHHHHHHHhC-----CCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEE--cCCCCCCCCCChhhhHhHH
Q psy10250 248 NQWPELFSEVKQMKEKCG-----EKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK--TSTGKEKTNATIPAGIIMC 320 (387)
Q Consensus 248 g~~~~v~~Ei~~v~~~~~-----~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVK--TSTGf~~~gat~~~~~~m~ 320 (387)
..++.-.++++.++...+ ....+.|-...+.- ++...++.. ..++|+|+|- ++.|.. . . +.
T Consensus 70 ~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~--~~~~er~~~-L~~agvD~ivID~a~g~s-----~-~---~~ 137 (352)
T PF00478_consen 70 MSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTR--DDDFERAEA-LVEAGVDVIVIDSAHGHS-----E-H---VI 137 (352)
T ss_dssp SCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESS--TCHHHHHHH-HHHTT-SEEEEE-SSTTS-----H-H---HH
T ss_pred CCHHHHHHHHhhhccccccccccccccceEEEEecCC--HHHHHHHHH-HHHcCCCEEEccccCccH-----H-H---HH
Confidence 568888888888886431 12456666666644 234555544 5779999764 455642 2 2 23
Q ss_pred HHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeecc
Q psy10250 321 SAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 374 (387)
Q Consensus 321 ~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtS 374 (387)
+.|+.+++..+ ++.|= +|.|-|.+.|+.|+ .+|+| ..|+|.-
T Consensus 138 ~~ik~ik~~~~-~~~vi-aGNV~T~e~a~~L~-----~aGad-----~vkVGiG 179 (352)
T PF00478_consen 138 DMIKKIKKKFP-DVPVI-AGNVVTYEGAKDLI-----DAGAD-----AVKVGIG 179 (352)
T ss_dssp HHHHHHHHHST-TSEEE-EEEE-SHHHHHHHH-----HTT-S-----EEEESSS
T ss_pred HHHHHHHHhCC-CceEE-ecccCCHHHHHHHH-----HcCCC-----EEEEecc
Confidence 56778888776 56664 69999999999999 59986 5787753
No 294
>PRK15108 biotin synthase; Provisional
Probab=82.31 E-value=51 Score=33.36 Aligned_cols=128 Identities=16% Similarity=0.123 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHc
Q psy10250 216 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFA 295 (387)
Q Consensus 216 ~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~a 295 (387)
.+.+.-+..++.+.+.|+++|-+|.-......-+++++.+=++.+++ ..+++++-.+.| +.+.+ +...++
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~-----~~i~v~~s~G~l-s~e~l----~~LkeA 145 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKA-----MGLETCMTLGTL-SESQA----QRLANA 145 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHh-----CCCEEEEeCCcC-CHHHH----HHHHHc
Confidence 57888888899999999999976633211112235666555555553 235788888888 55544 345689
Q ss_pred CCC----EEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEe-cc----CCCHHHHHHHHHHHHHh
Q psy10250 296 GSD----FIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPA-GG----ISTFEDSVRWIYLVLIM 358 (387)
Q Consensus 296 GaD----fVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKas-GG----Irt~~~a~~~i~l~~~~ 358 (387)
|+| .++|+-++.+.=.+.....-.++.++..++ .|++.. |+ .-|.++...++...++.
T Consensus 146 Gld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~-----~G~~v~sg~i~GlgEt~ed~v~~~~~l~~l 212 (345)
T PRK15108 146 GLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRD-----AGIKVCSGGIVGLGETVKDRAGLLLQLANL 212 (345)
T ss_pred CCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHH-----cCCceeeEEEEeCCCCHHHHHHHHHHHHhc
Confidence 999 567876654432222222233344444432 334443 42 47899988888654443
No 295
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=82.18 E-value=39 Score=32.31 Aligned_cols=144 Identities=16% Similarity=0.153 Sum_probs=78.2
Q ss_pred ccHHHHHHHhhhcCCCCCceEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHH
Q psy10250 184 ARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEK 263 (387)
Q Consensus 184 ~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~ 263 (387)
......++.-+. .+++|... .|.. -...++.+++.||+-+ +++...+++ .+.+ .++.+.
T Consensus 61 ~~~~~i~~i~~~----~~ipv~~~-GGi~--------s~~~~~~~l~~Ga~~V--iigt~~l~~--p~~~----~ei~~~ 119 (253)
T PRK02083 61 TMLDVVERVAEQ----VFIPLTVG-GGIR--------SVEDARRLLRAGADKV--SINSAAVAN--PELI----SEAADR 119 (253)
T ss_pred chHHHHHHHHHh----CCCCEEee-CCCC--------CHHHHHHHHHcCCCEE--EEChhHhhC--cHHH----HHHHHH
Confidence 344555544332 35666555 3443 2456677778899885 678777764 3333 333443
Q ss_pred hCCCc--------------ceEEEEeeccCCChHHHHHHHHHHHHcCCCEE-EcC---CCCCCCCCChhhhHhHHHHHHH
Q psy10250 264 CGEKI--------------HMKTILAVGELKTSENIYCASMTAMFAGSDFI-KTS---TGKEKTNATIPAGIIMCSAIKH 325 (387)
Q Consensus 264 ~~~~~--------------~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfV-KTS---TGf~~~gat~~~~~~m~~~v~~ 325 (387)
.+... +++|-+-...-.+........+.+.+.|++++ =|+ .|.. .|..+ +-++.
T Consensus 120 ~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~-~g~d~-------~~i~~ 191 (253)
T PRK02083 120 FGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTK-NGYDL-------ELTRA 191 (253)
T ss_pred cCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCC-CCcCH-------HHHHH
Confidence 33211 11222222211122223344566788999976 332 2321 23333 24455
Q ss_pred HHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 326 FHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 326 ~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
+.+.+ .+.|=++|||+|.++...++. ..|++
T Consensus 192 ~~~~~--~ipvia~GGv~s~~d~~~~~~----~~G~~ 222 (253)
T PRK02083 192 VSDAV--NVPVIASGGAGNLEHFVEAFT----EGGAD 222 (253)
T ss_pred HHhhC--CCCEEEECCCCCHHHHHHHHH----hCCcc
Confidence 55443 477889999999999999884 25764
No 296
>PRK07695 transcriptional regulator TenI; Provisional
Probab=82.10 E-value=6.4 Score=36.29 Aligned_cols=69 Identities=17% Similarity=0.177 Sum_probs=41.5
Q ss_pred HHHHHcCCCEEEcCCCCCC---CCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCC
Q psy10250 290 MTAMFAGSDFIKTSTGKEK---TNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNK 366 (387)
Q Consensus 290 ~ia~~aGaDfVKTSTGf~~---~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~ 366 (387)
+.+.+.|+|||=.+.-|.. .+..+.. .+.++.+.+.. ++.|=+.||| +.+++..++ .+|+
T Consensus 109 ~~a~~~Gadyi~~g~v~~t~~k~~~~~~g----~~~l~~~~~~~--~ipvia~GGI-~~~~~~~~~-----~~Ga----- 171 (201)
T PRK07695 109 IQAEKNGADYVVYGHVFPTDCKKGVPARG----LEELSDIARAL--SIPVIAIGGI-TPENTRDVL-----AAGV----- 171 (201)
T ss_pred HHHHHcCCCEEEECCCCCCCCCCCCCCCC----HHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHH-----HcCC-----
Confidence 4467899999954433321 1111111 12344444433 4778899999 999999998 5888
Q ss_pred CcceeeccchH
Q psy10250 367 DLFRIGASSLL 377 (387)
Q Consensus 367 ~~~RIGtSs~~ 377 (387)
.-|+.+|.+
T Consensus 172 --~gvav~s~i 180 (201)
T PRK07695 172 --SGIAVMSGI 180 (201)
T ss_pred --CEEEEEHHH
Confidence 466555443
No 297
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=82.04 E-value=21 Score=37.26 Aligned_cols=138 Identities=17% Similarity=0.097 Sum_probs=92.5
Q ss_pred HHHHHHHCCCCeeeeecCchhh-----hcCChhHHHHHHHHHHHHhCCCcceEEE--EeeccCCChHHHHHHHHHHHHcC
Q psy10250 224 EIELLAKQKVDEVDIVIQRSLV-----LNNQWPELFSEVKQMKEKCGEKIHMKTI--LAVGELKTSENIYCASMTAMFAG 296 (387)
Q Consensus 224 Ea~~Ai~~GAdEID~Vin~~~l-----k~g~~~~v~~Ei~~v~~~~~~~~~lKvI--lEt~~L~t~e~i~~a~~ia~~aG 296 (387)
-.+.+++.|+++|.++++.+-+ .....+++.+=+..+.+.+.+ .-+.+. .|...-.+.+-+.+.++.+.++|
T Consensus 81 ~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~-~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~g 159 (409)
T COG0119 81 DIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARD-HGLEVRFSAEDATRTDPEFLAEVVKAAIEAG 159 (409)
T ss_pred hHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-cCCeEEEEeeccccCCHHHHHHHHHHHHHcC
Confidence 5677888899999999987632 235667777777777777765 237888 88888877888889999999999
Q ss_pred CCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEec-cCCCHHH--HHHHHHHHHHhcCCCccCCCcceee
Q psy10250 297 SDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAG-GISTFED--SVRWIYLVLIMLGPDWLNKDLFRIG 372 (387)
Q Consensus 297 aDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasG-GIrt~~~--a~~~i~l~~~~~Ga~w~~~~~~RIG 372 (387)
++-|-=+- .-+.+||..+..++ +.+++.+++ .+..+. +=.++-. |-.+.. -++|++|++...+-||
T Consensus 160 a~~i~l~D--TvG~~~P~~~~~~i---~~l~~~v~~--~~~l~~H~HnD~G~AvANslaA---v~aGa~~v~~TvnGiG 228 (409)
T COG0119 160 ADRINLPD--TVGVATPNEVADII---EALKANVPN--KVILSVHCHNDLGMAVANSLAA---VEAGADQVEGTVNGIG 228 (409)
T ss_pred CcEEEECC--CcCccCHHHHHHHH---HHHHHhCCC--CCeEEEEecCCcchHHHHHHHH---HHcCCcEEEEecccce
Confidence 99886532 11346777665554 444555553 233322 1123322 333332 2699999988888888
No 298
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=81.95 E-value=44 Score=33.03 Aligned_cols=106 Identities=19% Similarity=0.109 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCC-------CCChhhhHhHHHHHHH
Q psy10250 253 LFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKT-------NATIPAGIIMCSAIKH 325 (387)
Q Consensus 253 v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~-------gat~~~~~~m~~~v~~ 325 (387)
+..|+.-++.+-..+ ++=++|--++|+..+. .+||||-|----|+..+ ..|+++.....+.|..
T Consensus 136 y~~EVemi~~A~~~g-----l~T~~yvf~~e~A~~M----~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~ 206 (268)
T PF09370_consen 136 YDREVEMIRKAHEKG-----LFTTAYVFNEEQARAM----AEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFD 206 (268)
T ss_dssp HHHHHHHHHHHHHTT------EE--EE-SHHHHHHH----HHHT-SEEEEE-SS----------S--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC-----CeeeeeecCHHHHHHH----HHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHH
Confidence 456888888765432 3445566566655433 38999988766665332 3456655544444444
Q ss_pred HHHHcCCCceEeEe-ccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccch
Q psy10250 326 FHKLSGKKIGLKPA-GGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL 376 (387)
Q Consensus 326 ~~~~~~~~~gIKas-GGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~ 376 (387)
-.+..++.+-+=.- |-|.+++|+..+++-.+... -=+|.||.
T Consensus 207 aa~~v~~dii~l~hGGPI~~p~D~~~~l~~t~~~~---------Gf~G~Ss~ 249 (268)
T PF09370_consen 207 AARAVNPDIIVLCHGGPIATPEDAQYVLRNTKGIH---------GFIGASSM 249 (268)
T ss_dssp HHHCC-TT-EEEEECTTB-SHHHHHHHHHH-TTEE---------EEEESTTT
T ss_pred HHHHhCCCeEEEEeCCCCCCHHHHHHHHhcCCCCC---------EEecccch
Confidence 44445555544444 46899999999996322222 24788873
No 299
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=81.41 E-value=4.6 Score=37.90 Aligned_cols=91 Identities=15% Similarity=0.122 Sum_probs=54.8
Q ss_pred CCCCCCCCH--HHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCC----cceEEEEeeccCCChH
Q psy10250 210 GFPSGQYLL--ETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEK----IHMKTILAVGELKTSE 283 (387)
Q Consensus 210 gFP~G~~~~--e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~----~~lKvIlEt~~L~t~e 283 (387)
+|+.|.... +.-+..+++.++.||+-||+=..-.+=.. .+-...+|+..++...+.- ..+-+-|.|..- +
T Consensus 8 Sf~~g~~~~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~-~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~~---~ 83 (210)
T PF00809_consen 8 SFSDGGRKFSEDEAVKRAREQVEAGADIIDIGAESTRPGA-TPVSEEEEMERLVPVLQAIREENPDVPLSIDTFNP---E 83 (210)
T ss_dssp TTTTTTCHHHHHHHHHHHHHHHHTT-SEEEEESSTSSTTS-SSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSH---H
T ss_pred CCcccCcccCHHHHHHHHHHHHHhcCCEEEecccccCCCC-CcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCCH---H
Confidence 688775553 34556799999999999998654321111 2334445666555544320 124566666533 4
Q ss_pred HHHHHHHHHHHcCCCEEEcCCCCCC
Q psy10250 284 NIYCASMTAMFAGSDFIKTSTGKEK 308 (387)
Q Consensus 284 ~i~~a~~ia~~aGaDfVKTSTGf~~ 308 (387)
+ .+.|.++|+++|-.++|+..
T Consensus 84 -v---~~~aL~~g~~~ind~~~~~~ 104 (210)
T PF00809_consen 84 -V---AEAALKAGADIINDISGFED 104 (210)
T ss_dssp -H---HHHHHHHTSSEEEETTTTSS
T ss_pred -H---HHHHHHcCcceEEecccccc
Confidence 3 23466679999999999753
No 300
>TIGR03586 PseI pseudaminic acid synthase.
Probab=81.40 E-value=65 Score=32.65 Aligned_cols=236 Identities=12% Similarity=0.019 Sum_probs=116.8
Q ss_pred EEEEEeccCCC--CHHHHHHHHHHHHHcCCCEEecCCCCCCCCC-CCcccccchhccccchhhhhhHHHHHHhhcccccc
Q psy10250 61 MKTILAVGELK--TSENIYYASMTAMFAGSDFIKTSTGKEKTNA-TIPADLTRQFEAVDLSRLKNKKSLLLKIIEFIDLT 137 (387)
Q Consensus 61 ~KvIlEt~~L~--~~e~i~~a~~~a~~ag~dfvKTSTG~~~~ga-t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ID~T 137 (387)
+.+|-|.|.=- +-+.-++..+.|.++|+|.||--| |....- +......+.+.....+. +.|...++++
T Consensus 2 ~~iIAEiG~NH~G~~~~A~~lI~~A~~aGAdavKFQ~-~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------- 72 (327)
T TIGR03586 2 PFIIAELSANHNGSLERALAMIEAAKAAGADAIKLQT-YTPDTITLDSDRPEFIIKGGLWDG-RTLYDLYQEA------- 72 (327)
T ss_pred CEEEEEECCCCCChHHHHHHHHHHHHHhCCCEEEeee-ccHHHhhccccccccccccCCcCC-ccHHHHHHHh-------
Confidence 46888887521 234556777889999999999887 532211 00000000000000010 1122222221
Q ss_pred cCCCCCCHHH---HHHHHHHhc-----CCCcHHHHHHHhhhccCCCeEEEEECC---ccHHHHHHHhhhcCCCCCceEEE
Q psy10250 138 TLSGDDTEAV---VETLTLKAI-----QPLSEELKEKVLHQQANVHTAAVCVYP---ARVVDVIKVLDRENARDDVKVAS 206 (387)
Q Consensus 138 ~L~~~~T~~~---i~~l~~~A~-----~~~~~~~~~~~~~~~~~~~~~aVcV~P---~~v~~a~~~L~~~~~~~~v~v~t 206 (387)
..+.++ +.+.|++.- .+|.++.++.+ .++++..+=|.. .+.++.+..-+ ++.+|.-
T Consensus 73 ----el~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l----~~~~v~~~KI~S~~~~n~~LL~~va~-----~gkPvil 139 (327)
T TIGR03586 73 ----HTPWEWHKELFERAKELGLTIFSSPFDETAVDFL----ESLDVPAYKIASFEITDLPLIRYVAK-----TGKPIIM 139 (327)
T ss_pred ----hCCHHHHHHHHHHHHHhCCcEEEccCCHHHHHHH----HHcCCCEEEECCccccCHHHHHHHHh-----cCCcEEE
Confidence 123333 333344431 23333322222 135566666655 34666655433 3333321
Q ss_pred EecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeec--CchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHH
Q psy10250 207 VAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVI--QRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSEN 284 (387)
Q Consensus 207 VvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vi--n~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~ 284 (387)
- .|..+.+.-..-++...+.|... +++ =.+.+-.-..+.=.+-|..+++..+ +-|.+-.... .
T Consensus 140 s-----tG~~t~~Ei~~Av~~i~~~g~~~--i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~----~pVG~SDHt~-G--- 204 (327)
T TIGR03586 140 S-----TGIATLEEIQEAVEACREAGCKD--LVLLKCTSSYPAPLEDANLRTIPDLAERFN----VPVGLSDHTL-G--- 204 (327)
T ss_pred E-----CCCCCHHHHHHHHHHHHHCCCCc--EEEEecCCCCCCCcccCCHHHHHHHHHHhC----CCEEeeCCCC-c---
Confidence 1 34456555555555555678754 444 1111111222222345566666553 3454433333 1
Q ss_pred HHHHHHHHHHcCCCEEEcCC-------CC-CCCCCChhhhHhHHHHHHHHHHHcCCCc
Q psy10250 285 IYCASMTAMFAGSDFIKTST-------GK-EKTNATIPAGIIMCSAIKHFHKLSGKKI 334 (387)
Q Consensus 285 i~~a~~ia~~aGaDfVKTST-------Gf-~~~gat~~~~~~m~~~v~~~~~~~~~~~ 334 (387)
..++..|...||++|-.=- |- .+...+|+..+.|++.+|.+....|+..
T Consensus 205 -~~~~~aAva~GA~iIEkH~tld~~l~G~D~~~Sl~p~e~~~lv~~ir~~~~~lg~~~ 261 (327)
T TIGR03586 205 -ILAPVAAVALGACVIEKHFTLDRSDGGVDSAFSLEPDEFKALVKEVRNAWLALGEVN 261 (327)
T ss_pred -hHHHHHHHHcCCCEEEeCCChhhcCCCCChhccCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 2678889999999886311 21 1234788899999999999988877654
No 301
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=81.28 E-value=11 Score=37.28 Aligned_cols=73 Identities=11% Similarity=0.077 Sum_probs=45.7
Q ss_pred HHHHHHHHcCCCeeee---ecch------hHHhcCChhHHHHHHHHHHHHcccCccEEEEEeccCCCCHHHHHHHHHHHH
Q psy10250 14 HEIELLAKQKVDEVDI---VIQR------SLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGELKTSENIYYASMTAM 84 (387)
Q Consensus 14 ~E~~~a~~~GA~EiD~---Vin~------~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~~~e~i~~a~~~a~ 84 (387)
.-++.+.+.|+|.||+ -.|. |.-...+.+.+.+-++++++..+..+.+|+= . +..++...++.+.
T Consensus 117 ~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~---~---~~~~~~~~a~~~~ 190 (299)
T cd02940 117 ELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLT---P---NITDIREIARAAK 190 (299)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECC---C---CchhHHHHHHHHH
Confidence 3344554569999887 3333 2222235667777777777665444667852 2 2235667778889
Q ss_pred HcCCCEEe
Q psy10250 85 FAGSDFIK 92 (387)
Q Consensus 85 ~ag~dfvK 92 (387)
++|+|+|-
T Consensus 191 ~~Gadgi~ 198 (299)
T cd02940 191 EGGADGVS 198 (299)
T ss_pred HcCCCEEE
Confidence 99999985
No 302
>PLN02591 tryptophan synthase
Probab=80.93 E-value=37 Score=33.03 Aligned_cols=114 Identities=14% Similarity=0.179 Sum_probs=64.8
Q ss_pred HHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCC
Q psy10250 225 IELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTST 304 (387)
Q Consensus 225 a~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTST 304 (387)
.+.|.+.|+|-+=++ ++. .+|...+++.|.. .-+..|.=.+-=++++.+.+.+.. ..|-=|+-+++
T Consensus 99 ~~~~~~aGv~Gviip-DLP----------~ee~~~~~~~~~~-~gl~~I~lv~Ptt~~~ri~~ia~~--~~gFIY~Vs~~ 164 (250)
T PLN02591 99 MATIKEAGVHGLVVP-DLP----------LEETEALRAEAAK-NGIELVLLTTPTTPTERMKAIAEA--SEGFVYLVSST 164 (250)
T ss_pred HHHHHHcCCCEEEeC-CCC----------HHHHHHHHHHHHH-cCCeEEEEeCCCCCHHHHHHHHHh--CCCcEEEeeCC
Confidence 567778888887443 332 3788888888864 346666644333233434333332 12555665556
Q ss_pred CCCCCCCC-hhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 305 GKEKTNAT-IPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 305 Gf~~~gat-~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
|-...... ++... +-++.+++.+ ++.|=+=-||+|.+|+.++. .+|+|
T Consensus 165 GvTG~~~~~~~~~~---~~i~~vk~~~--~~Pv~vGFGI~~~e~v~~~~-----~~GAD 213 (250)
T PLN02591 165 GVTGARASVSGRVE---SLLQELKEVT--DKPVAVGFGISKPEHAKQIA-----GWGAD 213 (250)
T ss_pred CCcCCCcCCchhHH---HHHHHHHhcC--CCceEEeCCCCCHHHHHHHH-----hcCCC
Confidence 64322122 22222 3355556543 44455545999999999998 58875
No 303
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=80.87 E-value=27 Score=32.85 Aligned_cols=109 Identities=15% Similarity=0.259 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcC
Q psy10250 217 LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAG 296 (387)
Q Consensus 217 ~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aG 296 (387)
+.+.=..-++.+++-|.+-|.+..+-. + ..+.|+.+++..+. ++++=.+-+.+.++. +.|.++|
T Consensus 20 ~~~~~~~~~~a~~~gGi~~iEvt~~~~-----~---~~~~i~~l~~~~~~----~~~iGaGTV~~~~~~----~~a~~aG 83 (206)
T PRK09140 20 TPDEALAHVGALIEAGFRAIEIPLNSP-----D---PFDSIAALVKALGD----RALIGAGTVLSPEQV----DRLADAG 83 (206)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCc-----c---HHHHHHHHHHHcCC----CcEEeEEecCCHHHH----HHHHHcC
Confidence 445555557788888999999987543 2 22366666654432 467777777666654 6789999
Q ss_pred CCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCcc
Q psy10250 297 SDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 364 (387)
Q Consensus 297 aDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~ 364 (387)
|||+-+ .++ .++ +..... ..++-..=|..|.+++..-. .+|+|++
T Consensus 84 A~fivs-p~~-----~~~--------v~~~~~----~~~~~~~~G~~t~~E~~~A~-----~~Gad~v 128 (206)
T PRK09140 84 GRLIVT-PNT-----DPE--------VIRRAV----ALGMVVMPGVATPTEAFAAL-----RAGAQAL 128 (206)
T ss_pred CCEEEC-CCC-----CHH--------HHHHHH----HCCCcEEcccCCHHHHHHHH-----HcCCCEE
Confidence 999975 333 232 222222 23344444699999998888 5899866
No 304
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=80.77 E-value=11 Score=35.58 Aligned_cols=121 Identities=18% Similarity=0.247 Sum_probs=71.5
Q ss_pred HHHHHHHHHCCC-CeeeeecCchhhh-cC--ChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHH-HHHcC
Q psy10250 222 LHEIELLAKQKV-DEVDIVIQRSLVL-NN--QWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMT-AMFAG 296 (387)
Q Consensus 222 ~~Ea~~Ai~~GA-dEID~Vin~~~lk-~g--~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~i-a~~aG 296 (387)
+.|++++.+.|. + -+--|.+.++ +| +|..+..||..+ .++ +|.+|+--- +.+++.+-++. ....|
T Consensus 9 ~~ei~~~~~~~~i~--GvTTNPsll~k~~~~~~~~~~~~i~~~---~~~----~v~~qv~~~-~~e~~i~~a~~l~~~~~ 78 (211)
T cd00956 9 LEEIKKASETGLLD--GVTTNPSLIAKSGRIDFEAVLKEICEI---IDG----PVSAQVVST-DAEGMVAEARKLASLGG 78 (211)
T ss_pred HHHHHHHHhcCCcC--ccccCHHHHHhcCCcCHHHHHHHHHHh---cCC----CEEEEEEeC-CHHHHHHHHHHHHHhCC
Confidence 456777777542 2 1334766666 33 455555555544 433 344444333 44555554444 44447
Q ss_pred CCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeE-eccCCCHHHHHHHHHHHHHhcCCCccCCCcceeec
Q psy10250 297 SDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKP-AGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGA 373 (387)
Q Consensus 297 aDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKa-sGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGt 373 (387)
--+||-+. |.+. +++++.+++. ||+. +|.|=|.+||..-. .+|+++++|-..|+--
T Consensus 79 ~~~iKIP~-------T~~g----l~ai~~L~~~-----gi~v~~T~V~s~~Qa~~Aa-----~AGA~yvsP~vgR~~~ 135 (211)
T cd00956 79 NVVVKIPV-------TEDG----LKAIKKLSEE-----GIKTNVTAIFSAAQALLAA-----KAGATYVSPFVGRIDD 135 (211)
T ss_pred CEEEEEcC-------cHhH----HHHHHHHHHc-----CCceeeEEecCHHHHHHHH-----HcCCCEEEEecChHhh
Confidence 67777532 2221 2455555433 5665 57899999999999 5999999999999643
No 305
>PRK08508 biotin synthase; Provisional
Probab=80.71 E-value=51 Score=32.20 Aligned_cols=47 Identities=11% Similarity=0.037 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHH
Q psy10250 216 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKE 262 (387)
Q Consensus 216 ~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~ 262 (387)
.+.+.-+.+++++.+.|++++-+|-+-..+....++++.+=++.+++
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~ 86 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKK 86 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHh
Confidence 35566666677777777777766533222223344555554555543
No 306
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=80.70 E-value=70 Score=32.60 Aligned_cols=95 Identities=14% Similarity=0.161 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHH
Q psy10250 215 QYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMF 294 (387)
Q Consensus 215 ~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~ 294 (387)
..+.+.-..-++.+.+.|++.|=++=-.|.+ ..+.+++=++.+++.. .+.|+...=++.-.=..-+..|++
T Consensus 137 r~~~~~l~~~~~~~~~~g~~~i~l~DT~G~~---~P~~v~~li~~l~~~~------~~~l~~H~Hnd~GlA~AN~laA~~ 207 (363)
T TIGR02090 137 RTDIDFLIKVFKRAEEAGADRINIADTVGVL---TPQKMEELIKKLKENV------KLPISVHCHNDFGLATANSIAGVK 207 (363)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEeCCCCcc---CHHHHHHHHHHHhccc------CceEEEEecCCCChHHHHHHHHHH
Confidence 4456666666788889999998666445543 3566777677766533 256787766554433344677999
Q ss_pred cCCCEEEcCC-CCC--CCCCChhhhHh
Q psy10250 295 AGSDFIKTST-GKE--KTNATIPAGII 318 (387)
Q Consensus 295 aGaDfVKTST-Gf~--~~gat~~~~~~ 318 (387)
+|+++|-+|- |.| .+++.+|.+..
T Consensus 208 aGa~~vd~s~~GlGeraGN~~lE~vv~ 234 (363)
T TIGR02090 208 AGAEQVHVTVNGIGERAGNAALEEVVM 234 (363)
T ss_pred CCCCEEEEEeeccccccccccHHHHHH
Confidence 9999999876 444 35667765443
No 307
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=80.37 E-value=34 Score=33.44 Aligned_cols=115 Identities=12% Similarity=0.046 Sum_probs=70.0
Q ss_pred ecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcC--CCEEEcCCCC------C-CC
Q psy10250 239 VIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAG--SDFIKTSTGK------E-KT 309 (387)
Q Consensus 239 Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aG--aDfVKTSTGf------~-~~ 309 (387)
.+|.-.+.+...+...++++...+.. ...+|+-..-- +.+++.++++...+++ +|+|--.-|- + ..
T Consensus 64 ~~n~~gl~~~g~~~~~~~~~~~~~~~----~~pl~~qi~g~-~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l 138 (300)
T TIGR01037 64 MLNAIGLQNPGVEAFLEELKPVREEF----PTPLIASVYGS-SVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAI 138 (300)
T ss_pred HhhhccCCCcCHHHHHHHHHHHhccC----CCcEEEEeecC-CHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCcccc
Confidence 45665666656677777776654322 23466666544 6788999999988874 9998765441 1 11
Q ss_pred CCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccC
Q psy10250 310 NATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLN 365 (387)
Q Consensus 310 gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~ 365 (387)
+-+++.. .+-++.+++.++-.+.+|.+.++.+..+....+. ++|++.+.
T Consensus 139 ~~~~~~~---~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~----~~G~d~i~ 187 (300)
T TIGR01037 139 GQDPELS---ADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAE----EAGADGLT 187 (300)
T ss_pred ccCHHHH---HHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHH----HcCCCEEE
Confidence 2344433 3445555666677899999865544333333332 68998774
No 308
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=80.23 E-value=9.1 Score=38.04 Aligned_cols=92 Identities=11% Similarity=0.058 Sum_probs=57.8
Q ss_pred EEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCC-------CCCCCC-hhhhHhHHHHHHHHHHHcCCCceEeEeccCC
Q psy10250 272 TILAVGELKTSENIYCASMTAMFAGSDFIKTSTGK-------EKTNAT-IPAGIIMCSAIKHFHKLSGKKIGLKPAGGIS 343 (387)
Q Consensus 272 vIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf-------~~~gat-~~~~~~m~~~v~~~~~~~~~~~gIKasGGIr 343 (387)
+|+-.+-- +++++.+|++.+.++|+|.|--.-|- ...|+. ...-..+.+-++.+++.++-.+.+|..+|..
T Consensus 65 ~i~ql~g~-~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~ 143 (319)
T TIGR00737 65 ISVQLFGS-DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWD 143 (319)
T ss_pred EEEEEeCC-CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccC
Confidence 45544433 67889999999999999999765442 112332 2233455556666677778889999998864
Q ss_pred C-HHHHHHHHHHHHHhcCCCccC
Q psy10250 344 T-FEDSVRWIYLVLIMLGPDWLN 365 (387)
Q Consensus 344 t-~~~a~~~i~l~~~~~Ga~w~~ 365 (387)
. ..+..++...+ +.+|++++.
T Consensus 144 ~~~~~~~~~a~~l-~~~G~d~i~ 165 (319)
T TIGR00737 144 DAHINAVEAARIA-EDAGAQAVT 165 (319)
T ss_pred CCcchHHHHHHHH-HHhCCCEEE
Confidence 2 22233333221 267998873
No 309
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=80.06 E-value=33 Score=31.17 Aligned_cols=116 Identities=18% Similarity=0.171 Sum_probs=60.0
Q ss_pred HHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEc
Q psy10250 223 HEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKT 302 (387)
Q Consensus 223 ~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKT 302 (387)
..++.+.+.|+|-+=+-. + ..+...+.++.+++ ..+++++-+..- ++++..+. + ..++||+-.
T Consensus 71 ~~~~~~~~~g~dgv~vh~--~-----~~~~~~~~~~~~~~-----~~~~~g~~~~~~-~~~~~~~~--~--~~~~d~i~~ 133 (211)
T cd00429 71 RYIEAFAKAGADIITFHA--E-----ATDHLHRTIQLIKE-----LGMKAGVALNPG-TPVEVLEP--Y--LDEVDLVLV 133 (211)
T ss_pred HHHHHHHHcCCCEEEECc--c-----chhhHHHHHHHHHH-----CCCeEEEEecCC-CCHHHHHH--H--HhhCCEEEE
Confidence 357778888887653222 1 12333444444442 236777766432 33333222 2 233898843
Q ss_pred CCCC-CCCCCChhhhHhHHHHHHHHHHHcC---CCceEeEeccCCCHHHHHHHHHHHHHhcCCCc
Q psy10250 303 STGK-EKTNATIPAGIIMCSAIKHFHKLSG---KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 363 (387)
Q Consensus 303 STGf-~~~gat~~~~~~m~~~v~~~~~~~~---~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w 363 (387)
.+-+ +..+.+... ...+.++.+++..+ .++.|=++|||+. +++..++ ..|+++
T Consensus 134 ~~~~~g~tg~~~~~--~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~-----~~gad~ 190 (211)
T cd00429 134 MSVNPGFGGQKFIP--EVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLA-----EAGADV 190 (211)
T ss_pred EEECCCCCCcccCH--HHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHH-----HcCCCE
Confidence 2211 111111111 11234455554443 2467778999996 9999998 588864
No 310
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=79.77 E-value=1e+02 Score=33.83 Aligned_cols=136 Identities=16% Similarity=0.120 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeecc--CCChHHHHHHHHHHHH
Q psy10250 217 LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGE--LKTSENIYCASMTAMF 294 (387)
Q Consensus 217 ~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~--L~t~e~i~~a~~ia~~ 294 (387)
+-++....++.|.+.|.|.|=+....+.+ ..+..=++.+++ . +..+-+-|.... .-+++...+.++.+.+
T Consensus 94 pd~vv~~~v~~A~~~Gvd~irif~~lnd~-----~n~~~~i~~ak~-~--G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~ 165 (592)
T PRK09282 94 PDDVVEKFVEKAAENGIDIFRIFDALNDV-----RNMEVAIKAAKK-A--GAHVQGTISYTTSPVHTIEKYVELAKELEE 165 (592)
T ss_pred cchhhHHHHHHHHHCCCCEEEEEEecChH-----HHHHHHHHHHHH-c--CCEEEEEEEeccCCCCCHHHHHHHHHHHHH
Confidence 45677778999999999998888777654 233333333332 1 233443343211 1256778888888999
Q ss_pred cCCCEE--EcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeE--eccCCCHHHHHHHHHHHHHhcCCCccCCCcce
Q psy10250 295 AGSDFI--KTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKP--AGGISTFEDSVRWIYLVLIMLGPDWLNKDLFR 370 (387)
Q Consensus 295 aGaDfV--KTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKa--sGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~R 370 (387)
+|+|-| |-+.| ..+|..+..++..+ ++..+-.+++.. --|.- ....+.-+ ++|++|++....=
T Consensus 166 ~Gad~I~i~Dt~G----~~~P~~~~~lv~~l---k~~~~~pi~~H~Hnt~Gla-~An~laAv-----~aGad~vD~ai~g 232 (592)
T PRK09282 166 MGCDSICIKDMAG----LLTPYAAYELVKAL---KEEVDLPVQLHSHCTSGLA-PMTYLKAV-----EAGVDIIDTAISP 232 (592)
T ss_pred cCCCEEEECCcCC----CcCHHHHHHHHHHH---HHhCCCeEEEEEcCCCCcH-HHHHHHHH-----HhCCCEEEeeccc
Confidence 999964 55555 47787776665444 444444444443 11221 12233333 6999988666554
Q ss_pred eec
Q psy10250 371 IGA 373 (387)
Q Consensus 371 IGt 373 (387)
+|-
T Consensus 233 ~g~ 235 (592)
T PRK09282 233 LAF 235 (592)
T ss_pred cCC
Confidence 443
No 311
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=79.63 E-value=63 Score=31.40 Aligned_cols=22 Identities=14% Similarity=0.216 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEec
Q psy10250 72 TSENIYYASMTAMFAGSDFIKT 93 (387)
Q Consensus 72 ~~e~i~~a~~~a~~ag~dfvKT 93 (387)
+.+++...++...++|||+|+-
T Consensus 21 ~~~~~~~~a~~~~~~GA~iIDI 42 (257)
T TIGR01496 21 SVDKAVAHAERMLEEGADIIDV 42 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEE
Confidence 5677777777779999999998
No 312
>PRK12928 lipoyl synthase; Provisional
Probab=79.51 E-value=43 Score=33.19 Aligned_cols=147 Identities=12% Similarity=0.092 Sum_probs=81.5
Q ss_pred EEEecCCCCCC---CCHHHHHHHHHHHHHCCCCeeeee-cCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCC
Q psy10250 205 ASVAAGFPSGQ---YLLETRLHEIELLAKQKVDEVDIV-IQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELK 280 (387)
Q Consensus 205 ~tVvigFP~G~---~~~e~K~~Ea~~Ai~~GAdEID~V-in~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~ 280 (387)
|+- ..||.|. .+.+.-..+++.+.+.|++||-++ .+..-+.++..+.+.+=+++|++..+. ..++++.. ..+
T Consensus 74 C~F-Ca~~~g~~~~~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~-~~I~~ltp-~~~- 149 (290)
T PRK12928 74 CAF-CQVDKGRPMPLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPG-TGIEVLTP-DFW- 149 (290)
T ss_pred CCC-CCccCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCC-CEEEEecc-ccc-
Confidence 555 5667666 356777788998999999998775 333333345556666777777765544 45665432 222
Q ss_pred ChHHHHHHHHHHHHcCCCEEE----cCCC---CCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEe---ccCCCHHHHHH
Q psy10250 281 TSENIYCASMTAMFAGSDFIK----TSTG---KEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPA---GGISTFEDSVR 350 (387)
Q Consensus 281 t~e~i~~a~~ia~~aGaDfVK----TSTG---f~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKas---GGIrt~~~a~~ 350 (387)
.. ....-+...++|++.+. ||.- .-..+.|.+... +.++.+++. ++.+.+|.. |=.-|.++...
T Consensus 150 ~~--~~e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~l---e~l~~ak~~-gp~i~~~s~iIvG~GET~ed~~e 223 (290)
T PRK12928 150 GG--QRERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSL---DLLARAKEL-APDIPTKSGLMLGLGETEDEVIE 223 (290)
T ss_pred cC--CHHHHHHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHH---HHHHHHHHh-CCCceecccEEEeCCCCHHHHHH
Confidence 10 22334556778887665 3311 011345555432 333444333 444555543 43467777777
Q ss_pred HHHHHHHhcCCC
Q psy10250 351 WIYLVLIMLGPD 362 (387)
Q Consensus 351 ~i~l~~~~~Ga~ 362 (387)
.+..+++ +|.+
T Consensus 224 tl~~Lre-l~~d 234 (290)
T PRK12928 224 TLRDLRA-VGCD 234 (290)
T ss_pred HHHHHHh-cCCC
Confidence 7654433 5653
No 313
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=79.50 E-value=19 Score=36.68 Aligned_cols=88 Identities=15% Similarity=0.068 Sum_probs=51.8
Q ss_pred HHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHH--cCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcC-CC
Q psy10250 257 VKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMF--AGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSG-KK 333 (387)
Q Consensus 257 i~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~--aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~-~~ 333 (387)
+++.++.++. ..|+++|+..+. +++..|.+.+.. .|+|-|-==+ |++ .+++....+..++...+..+ ++
T Consensus 190 ~~~~~~~~p~--~~~i~vevdt~~--~~~~~Al~~~~~~~~~~d~I~LDn-~~~---~~g~l~~~v~~vr~~ld~~g~~~ 261 (343)
T PRK08662 190 WKAFDEVVPP--DVPRIALVDTFK--DEREEALRAAEALGDRLDGVRLDT-PSS---RRGNFRKIVREVRWTLDIRGYEH 261 (343)
T ss_pred HHHHHHHCCC--CCCEEEEEEeCC--ccHHHHHHHHHHhCCcCCEEEcCC-CCC---CCccHHHHHHHHHHHHHhcCCCC
Confidence 6666666653 368999999883 345445443332 2777775322 221 11222223333443333343 56
Q ss_pred ceEeEeccCCCHHHHHHHHH
Q psy10250 334 IGLKPAGGISTFEDSVRWIY 353 (387)
Q Consensus 334 ~gIKasGGIrt~~~a~~~i~ 353 (387)
+.|=+|||| |.+.+.+|-.
T Consensus 262 v~IeaSGgI-~~~ni~~ya~ 280 (343)
T PRK08662 262 VKIFVSGGL-DPERIRELRD 280 (343)
T ss_pred eEEEEeCCC-CHHHHHHHHH
Confidence 899999999 8899999884
No 314
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=79.47 E-value=20 Score=36.68 Aligned_cols=129 Identities=14% Similarity=0.065 Sum_probs=76.0
Q ss_pred HCCCCeeeeecCchhhhc-CChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEc--CCCC
Q psy10250 230 KQKVDEVDIVIQRSLVLN-NQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKT--STGK 306 (387)
Q Consensus 230 ~~GAdEID~Vin~~~lk~-g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKT--STGf 306 (387)
..+..=+|+-++-+.++. .-...=.+-++++...-+.+...-++=+..-| +.++..+.++-.+++|+||||- |+|-
T Consensus 93 ~~~irl~D~~~P~~~~~~f~GP~fGi~g~R~~~gv~~rPli~Ti~kp~~gl-d~~~la~~~~~l~~gGvD~Ikdde~~ge 171 (367)
T cd08205 93 LPGIKLVDLELPDSLLAAFPGPRFGIEGLRRLLGVHDRPLLGTIIKPSIGL-SPEELAELAYELALGGIDLIKDDELLAD 171 (367)
T ss_pred CCceEEEecCCCHHHHhhCCCCCCCchhHHHHhCCCCCCeeeeeeCCCCCC-CHHHHHHHHHHHHhcCCCeeeccccccC
Confidence 346777888888777753 11122234444444432223334444455578 6788999999999999999997 4553
Q ss_pred CCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccC-CCHHHHHHHHHHHHHhcCCC
Q psy10250 307 EKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGI-STFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 307 ~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGI-rt~~~a~~~i~l~~~~~Ga~ 362 (387)
.+.-.--+-+....++++...+.+|++.. .+++| -+.+++++....+++ +|++
T Consensus 172 ~~~~~~eER~~~v~~av~~a~~~TG~~~~--y~~nit~~~~e~i~~a~~a~~-~Gad 225 (367)
T cd08205 172 QPYAPFEERVRACMEAVRRANEETGRKTL--YAPNITGDPDELRRRADRAVE-AGAN 225 (367)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhhCCcce--EEEEcCCCHHHHHHHHHHHHH-cCCC
Confidence 22222223344444555555555555433 24555 555777777776654 7875
No 315
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=79.39 E-value=12 Score=37.61 Aligned_cols=94 Identities=22% Similarity=0.209 Sum_probs=57.1
Q ss_pred ChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHH
Q psy10250 249 QWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHK 328 (387)
Q Consensus 249 ~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~ 328 (387)
.++...++++.++ + .+-+..-.+. +++ -..-++.+.++|+|+|--++.++.. +. ..+.|+.+++
T Consensus 68 ~~~~~~~~i~~vk----~--~l~v~~~~~~--~~~-~~~~~~~l~eagv~~I~vd~~~G~~----~~---~~~~i~~ik~ 131 (325)
T cd00381 68 SIEEQAEEVRKVK----G--RLLVGAAVGT--RED-DKERAEALVEAGVDVIVIDSAHGHS----VY---VIEMIKFIKK 131 (325)
T ss_pred CHHHHHHHHHHhc----c--CceEEEecCC--Chh-HHHHHHHHHhcCCCEEEEECCCCCc----HH---HHHHHHHHHH
Confidence 4566666776665 2 1222222222 222 3344567788999998766654322 11 2245677776
Q ss_pred HcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccC
Q psy10250 329 LSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLN 365 (387)
Q Consensus 329 ~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~ 365 (387)
..+ .+.|= +|.+-|.++|..++ .+|+|.+.
T Consensus 132 ~~p-~v~Vi-~G~v~t~~~A~~l~-----~aGaD~I~ 161 (325)
T cd00381 132 KYP-NVDVI-AGNVVTAEAARDLI-----DAGADGVK 161 (325)
T ss_pred HCC-CceEE-ECCCCCHHHHHHHH-----hcCCCEEE
Confidence 653 33333 39999999999999 59998764
No 316
>PLN02389 biotin synthase
Probab=79.24 E-value=42 Score=34.56 Aligned_cols=129 Identities=14% Similarity=0.070 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHc
Q psy10250 216 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFA 295 (387)
Q Consensus 216 ~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~a 295 (387)
.+.+.-+.+++++.+.|++++-+|..+.. .++.+...+.+..+.+..+. ..+.+..-.+++ +.|++ +...++
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg--~~~e~~~~e~i~eiir~ik~-~~l~i~~s~G~l-~~E~l----~~LkeA 187 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRD--TVGRKTNFNQILEYVKEIRG-MGMEVCCTLGML-EKEQA----AQLKEA 187 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccC--CCCChhHHHHHHHHHHHHhc-CCcEEEECCCCC-CHHHH----HHHHHc
Q ss_pred CCC----EEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeE-eccC----CCHHHHHHHHHHHHH
Q psy10250 296 GSD----FIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKP-AGGI----STFEDSVRWIYLVLI 357 (387)
Q Consensus 296 GaD----fVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKa-sGGI----rt~~~a~~~i~l~~~ 357 (387)
|+| -+.||..+.+.-.+.......++.++..++. |+++ +|+| -|.++...++..+++
T Consensus 188 Gld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~-----Gi~v~sg~IiGlgEt~edrv~~l~~Lr~ 253 (379)
T PLN02389 188 GLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREA-----GISVCSGGIIGLGEAEEDRVGLLHTLAT 253 (379)
T ss_pred CCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHc-----CCeEeEEEEECCCCCHHHHHHHHHHHHh
No 317
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=79.21 E-value=97 Score=33.36 Aligned_cols=91 Identities=18% Similarity=0.075 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHc
Q psy10250 216 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFA 295 (387)
Q Consensus 216 ~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~a 295 (387)
++.+.=+.-++.+.+.||+.|-+.=-.|.+ ....+++=++.+++. +++.|+...=++.-.-...+..|+++
T Consensus 155 ~d~~~l~~~~~~~~~~Gad~i~l~DTvG~~---~P~~v~~li~~l~~~------~~v~i~~H~HND~GlA~ANslaAi~a 225 (524)
T PRK12344 155 ANPEYALATLKAAAEAGADWVVLCDTNGGT---LPHEVAEIVAEVRAA------PGVPLGIHAHNDSGCAVANSLAAVEA 225 (524)
T ss_pred CCHHHHHHHHHHHHhCCCCeEEEccCCCCc---CHHHHHHHHHHHHHh------cCCeEEEEECCCCChHHHHHHHHHHh
Confidence 345545555677888999998544333432 356666666666653 36788887775544444557789999
Q ss_pred CCCEEEcCC-CCC--CCCCChhh
Q psy10250 296 GSDFIKTST-GKE--KTNATIPA 315 (387)
Q Consensus 296 GaDfVKTST-Gf~--~~gat~~~ 315 (387)
|||+|-+|- |.| .+++.++.
T Consensus 226 Ga~~Vd~Tl~GlGERaGNa~lE~ 248 (524)
T PRK12344 226 GARQVQGTINGYGERCGNANLCS 248 (524)
T ss_pred CCCEEEEecccccccccCcCHHH
Confidence 999999876 444 45666664
No 318
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=79.13 E-value=27 Score=34.11 Aligned_cols=115 Identities=15% Similarity=0.069 Sum_probs=68.4
Q ss_pred eecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCC------C-CCC
Q psy10250 238 IVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGK------E-KTN 310 (387)
Q Consensus 238 ~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf------~-~~g 310 (387)
..+|.-.+.+.-.+.+.++++..+... + ..+|+-..-- +.++..++++.+.++|+|+|--.-+- + ..+
T Consensus 62 ~~~n~~g~~~~g~~~~~~~~~~~~~~~-~---~p~ivsi~g~-~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~ 136 (296)
T cd04740 62 GMLNAIGLQNPGVEAFLEELLPWLREF-G---TPVIASIAGS-TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG 136 (296)
T ss_pred ceeeecCCCCcCHHHHHHHHHHHhhcC-C---CcEEEEEecC-CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc
Confidence 455554444444567777777765422 1 2455544333 46788899999999999999664321 0 112
Q ss_pred CChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCcc
Q psy10250 311 ATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 364 (387)
Q Consensus 311 at~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~ 364 (387)
-+++.. .+-++.+++.++-.+.+|.+....+..+....+. ++|++++
T Consensus 137 ~~~~~~---~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~----~~G~d~i 183 (296)
T cd04740 137 TDPEAV---AEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAE----EAGADGL 183 (296)
T ss_pred CCHHHH---HHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHH----HcCCCEE
Confidence 334433 3444555556667899999877654444333332 6898765
No 319
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=79.12 E-value=21 Score=35.76 Aligned_cols=85 Identities=14% Similarity=0.066 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHcCCCeeeeecch----------hHHhcCChhHHHHHHHHHHHHccc--CccEEEEEeccCCCCHHHH
Q psy10250 9 LETRLHEIELLAKQKVDEVDIVIQR----------SLVLNNQWPELFSEVKQMKEKCEE--KIHMKTILAVGELKTSENI 76 (387)
Q Consensus 9 ~~~K~~E~~~a~~~GA~EiD~Vin~----------~~lk~g~~~~v~~ei~~v~~~~~~--~~~~KvIlEt~~L~~~e~i 76 (387)
.+.=+.-|+.+.+.|+|+||+=+-. |.-+.++.+.+.+=+++++++++. .+.+|+=+ |. ++.++.
T Consensus 74 p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~--g~-~~~~~~ 150 (312)
T PRK10550 74 PQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRL--GW-DSGERK 150 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEEC--CC-CCchHH
Confidence 3433445667788899999974222 223345678888888888887752 34555544 54 233456
Q ss_pred HHHHHHHHHcCCCEEecCCC
Q psy10250 77 YYASMTAMFAGSDFIKTSTG 96 (387)
Q Consensus 77 ~~a~~~a~~ag~dfvKTSTG 96 (387)
...++.+.++|+|+|--+.+
T Consensus 151 ~~~a~~l~~~Gvd~i~Vh~R 170 (312)
T PRK10550 151 FEIADAVQQAGATELVVHGR 170 (312)
T ss_pred HHHHHHHHhcCCCEEEECCC
Confidence 78888999999999966543
No 320
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=79.11 E-value=38 Score=33.94 Aligned_cols=115 Identities=12% Similarity=0.070 Sum_probs=72.9
Q ss_pred ecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCC-----CCCCCCh
Q psy10250 239 VIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGK-----EKTNATI 313 (387)
Q Consensus 239 Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf-----~~~gat~ 313 (387)
.+|.--+-+.-.+++.++++..++..+ . -+|+-..-- +.++..++++.+.++|+|+|--.-+. +..|..+
T Consensus 73 ~in~~g~~n~g~~~~~~~i~~~~~~~~--~--pvi~si~g~-~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~ 147 (325)
T cd04739 73 YFPEYGRYNLGPEEYLELIRRAKRAVS--I--PVIASLNGV-SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEV 147 (325)
T ss_pred ccccccccCcCHHHHHHHHHHHHhccC--C--eEEEEeCCC-CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchH
Confidence 345444445557888899988765432 2 255554433 56888899999999999999764442 1122333
Q ss_pred hhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCcc
Q psy10250 314 PAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 364 (387)
Q Consensus 314 ~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~ 364 (387)
+ ..+.+-++.+++.+...+-+|.++.+.+..+....+. ++|++.+
T Consensus 148 ~--~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~----~~Gadgi 192 (325)
T cd04739 148 E--QRYLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLD----AAGADGL 192 (325)
T ss_pred H--HHHHHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHH----HcCCCeE
Confidence 2 2233455666666778899999987765555544443 6798765
No 321
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=79.00 E-value=21 Score=34.04 Aligned_cols=128 Identities=13% Similarity=0.048 Sum_probs=72.9
Q ss_pred HHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeecc---CCC-hH--------HHHHHHH
Q psy10250 223 HEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGE---LKT-SE--------NIYCASM 290 (387)
Q Consensus 223 ~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~---L~t-~e--------~i~~a~~ 290 (387)
...+.+.+.|.+.+++-+.-...-.+. +.-..++.++++.+.. .-+++.+-.++ |.+ ++ .+.++++
T Consensus 14 ~~~~~~~~~G~~~vel~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~gl~ls~h~p~~~nl~s~d~~~r~~~~~~l~~~i~ 91 (273)
T smart00518 14 KAFIEAVDIGARSFQLFLGNPRSWKGV-RLSEETAEKFKEALKE-NNIDVSVHAPYLINLASPDKEKVEKSIERLIDEIK 91 (273)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCC-CCCHHHHHHHHHHHHH-cCCCEEEECCceecCCCCCHHHHHHHHHHHHHHHH
Confidence 457888899999999987765333221 1222345555554432 12455544443 112 22 2445788
Q ss_pred HHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEe----cc-----CCCHHHHHHHHHHH
Q psy10250 291 TAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPA----GG-----ISTFEDSVRWIYLV 355 (387)
Q Consensus 291 ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKas----GG-----Irt~~~a~~~i~l~ 355 (387)
+|.+.|+++|-+-+|+.....+-+....+.+.++.+.+ .+-||+.+ .| ++|.++...++..+
T Consensus 92 ~A~~lGa~~vv~h~g~~~~~~~e~~~~~~~~~l~~l~~---~~~gv~l~lEn~~~~~~~~~~~~~~~~~ll~~v 162 (273)
T smart00518 92 RCEELGIKALVFHPGSYLKQSKEEALNRIIESLNEVID---ETKGVVILLETTAGKGSQIGSTFEDLKEIIDLI 162 (273)
T ss_pred HHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHHHHh---ccCCcEEEEeccCCCCCccCCCHHHHHHHHHhc
Confidence 89999999999888875322222333334444444433 23455552 22 36888999998754
No 322
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=78.82 E-value=17 Score=32.33 Aligned_cols=123 Identities=17% Similarity=0.152 Sum_probs=73.6
Q ss_pred HHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEE---EeeccCC--------C------hHHHHHH
Q psy10250 226 ELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTI---LAVGELK--------T------SENIYCA 288 (387)
Q Consensus 226 ~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvI---lEt~~L~--------t------~e~i~~a 288 (387)
+.+.+.|.+-|++........ .....++.++++.+.+ .-+++. .-+.... . .+.+.++
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~----~~~~~~~~~~~~~~~~-~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 76 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPW----DEKDDEAEELRRLLED-YGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKA 76 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHH----THHHHHHHHHHHHHHH-TTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHH
T ss_pred hHHHHcCCCEEEEecCCCccc----ccchHHHHHHHHHHHH-cCCeEEEEecccccccccccccCcchhhHHHHHHHHHH
Confidence 567889999999987765322 1115666666666643 123322 2222111 1 4678889
Q ss_pred HHHHHHcCCCEEEcCCC---CCCCCCChhhhHhHHHHHHHHHHH---cCCCceEeEeccCC--CH---HHHHHHHH
Q psy10250 289 SMTAMFAGSDFIKTSTG---KEKTNATIPAGIIMCSAIKHFHKL---SGKKIGLKPAGGIS--TF---EDSVRWIY 353 (387)
Q Consensus 289 ~~ia~~aGaDfVKTSTG---f~~~gat~~~~~~m~~~v~~~~~~---~~~~~gIKasGGIr--t~---~~a~~~i~ 353 (387)
+++|...|++++.+..| ......+.+....+.+.++.+.+. .+-++.+-.-++-. +. +++..+++
T Consensus 77 i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~l~ 152 (213)
T PF01261_consen 77 IDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETPFSVEEIYRLLE 152 (213)
T ss_dssp HHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSHHHHHHHHH
T ss_pred HHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccchhhHHHHHHHHh
Confidence 99999999999999988 443333334444444445444443 35566666655443 33 88888886
No 323
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=78.61 E-value=52 Score=31.52 Aligned_cols=142 Identities=14% Similarity=0.046 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHc
Q psy10250 216 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFA 295 (387)
Q Consensus 216 ~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~a 295 (387)
-+.++=-.|++.|.+.|||-+=+.- ..+...+.. ..+.++. .-.++.+|.---.+ ..+..+...+.
T Consensus 64 Kt~D~G~~e~~ma~~aGAd~~tV~g------~A~~~TI~~----~i~~A~~-~~~~v~iDl~~~~~---~~~~~~~l~~~ 129 (217)
T COG0269 64 KTADAGAIEARMAFEAGADWVTVLG------AADDATIKK----AIKVAKE-YGKEVQIDLIGVWD---PEQRAKWLKEL 129 (217)
T ss_pred eecchhHHHHHHHHHcCCCEEEEEe------cCCHHHHHH----HHHHHHH-cCCeEEEEeecCCC---HHHHHHHHHHh
Confidence 3455667899999999999765431 123333333 3333332 23678887643323 44556666779
Q ss_pred CCCEEEcCCCCCCC--CCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeec
Q psy10250 296 GSDFIKTSTGKEKT--NATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGA 373 (387)
Q Consensus 296 GaDfVKTSTGf~~~--gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGt 373 (387)
|+|++-==+|.-.. |.++. .+++..+++.......|=++|||+ +++...|. ..|++-+-.|+.-.|+
T Consensus 130 gvd~~~~H~g~D~q~~G~~~~-----~~~l~~ik~~~~~g~~vAVaGGI~-~~~i~~~~-----~~~~~ivIvGraIt~a 198 (217)
T COG0269 130 GVDQVILHRGRDAQAAGKSWG-----EDDLEKIKKLSDLGAKVAVAGGIT-PEDIPLFK-----GIGADIVIVGRAITGA 198 (217)
T ss_pred CCCEEEEEecccHhhcCCCcc-----HHHHHHHHHhhccCceEEEecCCC-HHHHHHHh-----cCCCCEEEECchhcCC
Confidence 99998777776443 66663 146677777777668899999995 67777777 4776544555555555
Q ss_pred cchHHHHHH
Q psy10250 374 SSLLNNILQ 382 (387)
Q Consensus 374 Ss~~~il~~ 382 (387)
.+..+-.++
T Consensus 199 ~dp~~~a~~ 207 (217)
T COG0269 199 KDPAEAARK 207 (217)
T ss_pred CCHHHHHHH
Confidence 554444443
No 324
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=78.51 E-value=52 Score=29.88 Aligned_cols=114 Identities=15% Similarity=0.168 Sum_probs=58.9
Q ss_pred HHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEc
Q psy10250 223 HEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKT 302 (387)
Q Consensus 223 ~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKT 302 (387)
..++.+.+.|||-|=+.. +..+.....++.+++. + +++++-.+.- ++.+..++ ...++|||-.
T Consensus 70 ~~~~~~~~~gadgv~vh~-------~~~~~~~~~~~~~~~~-g----~~~~~~~~~~-t~~e~~~~----~~~~~d~i~~ 132 (210)
T TIGR01163 70 RYIEDFAEAGADIITVHP-------EASEHIHRLLQLIKDL-G----AKAGIVLNPA-TPLEFLEY----VLPDVDLVLL 132 (210)
T ss_pred HHHHHHHHcCCCEEEEcc-------CCchhHHHHHHHHHHc-C----CcEEEEECCC-CCHHHHHH----HHhhCCEEEE
Confidence 458888899999755422 2234444444444432 2 3334432222 22332221 2357898765
Q ss_pred CC---CCCCCCCChhhhHhHHHHHHHHHHHcC---CCceEeEeccCCCHHHHHHHHHHHHHhcCCCc
Q psy10250 303 ST---GKEKTNATIPAGIIMCSAIKHFHKLSG---KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 363 (387)
Q Consensus 303 ST---Gf~~~gat~~~~~~m~~~v~~~~~~~~---~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w 363 (387)
.+ |.......+. ..+.++.+++..+ ..+.|=++|||+ .+++..++ ..|+++
T Consensus 133 ~~~~~g~tg~~~~~~----~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~-----~~gad~ 189 (210)
T TIGR01163 133 MSVNPGFGGQKFIPD----TLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELA-----EAGADI 189 (210)
T ss_pred EEEcCCCCcccccHH----HHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHH-----HcCCCE
Confidence 32 2111111121 1234444444443 235677899996 69999988 589864
No 325
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=78.38 E-value=28 Score=33.74 Aligned_cols=101 Identities=21% Similarity=0.286 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcC-CCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCC
Q psy10250 254 FSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAG-SDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGK 332 (387)
Q Consensus 254 ~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aG-aDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~ 332 (387)
.+.++++++.++.+...|+-+|...+ ++.. .+.++| +|.|-==+|-. -.+.....+++....+...-..
T Consensus 169 ~~a~~~~~~~~~~~~~~~idve~~~~---~~~~----~~~~~~~~d~irlDs~~~---~~~~~~~~~~~~~~~~~~~~~~ 238 (281)
T cd00516 169 LAAVKALRRWLPELFIALIDVEVDTL---EEAL----EAAKAGGADGIRLDSGSP---EELDPAVLILKARAHLDGKGLP 238 (281)
T ss_pred HHHHHHHHHhCCCCceEEEEEEeCCH---HHHH----HHHhcCCCCEEEeCCCCh---HHHHHHHHHHHHHHhhhhcCCC
Confidence 46777887777632357788888754 3332 244666 99998766632 1122222233333333333346
Q ss_pred CceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccchH
Q psy10250 333 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLL 377 (387)
Q Consensus 333 ~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~~ 377 (387)
++.|=+||||. .+....|. ..|. +.||+++..
T Consensus 239 ~~~i~~Sggi~-~~~i~~~~-----~~gv-------d~~gvG~~~ 270 (281)
T cd00516 239 RVKIEASGGLD-EENIRAYA-----ETGV-------DVFGVGTLL 270 (281)
T ss_pred ceEEEEeCCCC-HHHHHHHH-----HcCC-------CEEEeCccc
Confidence 78999999997 88888877 5787 688887643
No 326
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=78.07 E-value=1.1e+02 Score=33.14 Aligned_cols=220 Identities=14% Similarity=0.075 Sum_probs=124.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHcccCccEEEEEeccCCCCHH---HHHHHHHH
Q psy10250 6 QYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGELKTSE---NIYYASMT 82 (387)
Q Consensus 6 ~~~~~~K~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~~~e---~i~~a~~~ 82 (387)
..+++-|+.=++...+.|.++|.+-.+... .++. +-++.+++.-..+ .++. -.+.-..++ .+.+..+.
T Consensus 19 ~~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s--~~d~----~~v~~i~~~~~~~--~~i~-~~~r~~r~~~~~~~d~~~ea 89 (526)
T TIGR00977 19 SFSLEDKIRIAERLDDLGIHYIEGGWPGAN--PKDV----QFFWQLKEMNFKN--AKIV-AFCSTRRPHKKVEEDKMLQA 89 (526)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCC--hHHH----HHHHHHHHhCCCC--cEEE-EEeeecCCCCCCchHHHHHH
Confidence 357899999999999999999999754432 1112 2223333211111 2222 111110111 34566777
Q ss_pred HHHcCCCEEecCCCCCCCCCCCcccccchhccccchhhhhhHHHHHHhhcccccccCCCCCCHHHHHHHHHHhcCCCcHH
Q psy10250 83 AMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEE 162 (387)
Q Consensus 83 a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ID~T~L~~~~T~~~i~~l~~~A~~~~~~~ 162 (387)
+.++|.+.|.....- | +.+.... | ..|.+++.+.+.+++
T Consensus 90 ~~~~~~~~v~i~~~~------------S---d~h~~~~------------------l--~~s~ee~l~~~~~~v------ 128 (526)
T TIGR00977 90 LIKAETPVVTIFGKS------------W---DLHVLEA------------------L--QTTLEENLAMIYDTV------ 128 (526)
T ss_pred HhcCCCCEEEEEeCC------------C---HHHHHHH------------------h--CCCHHHHHHHHHHHH------
Confidence 888888776543221 0 1111110 1 235677766666665
Q ss_pred HHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEecCCCCC-CCCHHHHHHHHHHHHHCCCCeeeeecC
Q psy10250 163 LKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPSG-QYLLETRLHEIELLAKQKVDEVDIVIQ 241 (387)
Q Consensus 163 ~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G-~~~~e~K~~Ea~~Ai~~GAdEID~Vin 241 (387)
+++++. +..+...+. .|=.| ....+.-+.-++.+.+.||+.|-+.=-
T Consensus 129 ------------------------~~ak~~------g~~V~~~~e--~f~D~~r~~~~~l~~~~~~a~~aGad~i~i~DT 176 (526)
T TIGR00977 129 ------------------------AYLKRQ------GDEVIYDAE--HFFDGYKANPEYALATLATAQQAGADWLVLCDT 176 (526)
T ss_pred ------------------------HHHHHc------CCeEEEEee--eeeecccCCHHHHHHHHHHHHhCCCCeEEEecC
Confidence 333332 112322222 34234 345666666677788889999876633
Q ss_pred chhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCC-CCCC--CCCChhh
Q psy10250 242 RSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTST-GKEK--TNATIPA 315 (387)
Q Consensus 242 ~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTST-Gf~~--~gat~~~ 315 (387)
.|.. ....+.+-++.+++..+ .++|+...=++.-.-..-+..|+++||++|-++- |.|. +++.++.
T Consensus 177 vG~~---~P~~v~~li~~l~~~~~-----~~~i~vH~HND~GlAvANslaAv~AGA~~Vd~TinGiGERaGNa~Le~ 245 (526)
T TIGR00977 177 NGGT---LPHEISEITTKVKRSLK-----QPQLGIHAHNDSGTAVANSLLAVEAGATMVQGTINGYGERCGNANLCS 245 (526)
T ss_pred CCCc---CHHHHHHHHHHHHHhCC-----CCEEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccCccCCCcHHH
Confidence 4432 46677777777776543 2458887775544444457889999999999865 5654 5677664
No 327
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=77.39 E-value=24 Score=36.11 Aligned_cols=103 Identities=15% Similarity=0.131 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCE--EEcCCC-----------------CCCCCCChh
Q psy10250 254 FSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDF--IKTSTG-----------------KEKTNATIP 314 (387)
Q Consensus 254 ~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDf--VKTSTG-----------------f~~~gat~~ 314 (387)
.+-+++..+.+++ . |+|+|..+- . +.+..|.+.+...|.|- |-==|| +...|.+++
T Consensus 190 ~~A~~a~~~~~Pe-~--~~ivlVD~~-~-d~~~~al~~a~~~g~~l~gVRlDs~gdl~DK~~~~~~~~~~~~~~~G~~~~ 264 (352)
T PRK07188 190 VEACKAYHKTFPE-D--ELIALVDYN-N-DVITDSLKVAREFGDKLKGVRVDTSKNMIDKYFIRHPEVLGTFDPRGVNPE 264 (352)
T ss_pred HHHHHHHHHHCCC-C--CeEEEEecC-c-ccHHHHHHHHHHhCCCccEEEeCCcchHhhhhcccccccccccccccccHH
Confidence 3455666666665 2 788888754 2 34556666666668877 733332 223456676
Q ss_pred hhHhHHHHHHHHHHHcC-CCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeecc
Q psy10250 315 AGIIMCSAIKHFHKLSG-KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 374 (387)
Q Consensus 315 ~~~~m~~~v~~~~~~~~-~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtS 374 (387)
.++ .++...+..+ .+++|=+|||| +.+....|. ..|+. -+.+=+||+
T Consensus 265 l~~----~vr~~Ld~~g~~~vkI~aSgGi-ne~~I~~~~-----~~g~p---iD~~GVGt~ 312 (352)
T PRK07188 265 LIK----ALRKALDENGGKHVKIIVSSGF-DAKKIREFE-----AQNVP---VDIYGVGSS 312 (352)
T ss_pred HHH----HHHHHHhhCCCCCcEEEEeCCC-CHHHHHHHH-----HcCCC---ccEEecCcc
Confidence 433 3344334456 78999999999 566677776 46752 334556654
No 328
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=77.20 E-value=28 Score=33.50 Aligned_cols=58 Identities=14% Similarity=0.082 Sum_probs=38.9
Q ss_pred HHHHHHHHcCC-CEEEcCCCCCC--CCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHH
Q psy10250 287 CASMTAMFAGS-DFIKTSTGKEK--TNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 353 (387)
Q Consensus 287 ~a~~ia~~aGa-DfVKTSTGf~~--~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~ 353 (387)
..++.+.+.|+ .+|=|+-.... .|..++ -++.+.+. ..+.|=+||||++.++...+..
T Consensus 148 e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~e-------l~~~l~~~--~~~pviasGGv~s~~Dl~~l~~ 208 (241)
T PRK14114 148 SLLKRLKEYGLEEIVHTEIEKDGTLQEHDFS-------LTRKIAIE--AEVKVFAAGGISSENSLKTAQR 208 (241)
T ss_pred HHHHHHHhcCCCEEEEEeechhhcCCCcCHH-------HHHHHHHH--CCCCEEEECCCCCHHHHHHHHh
Confidence 44556677887 46667654422 344554 34444444 3678999999999999999984
No 329
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=76.88 E-value=19 Score=33.45 Aligned_cols=81 Identities=12% Similarity=-0.031 Sum_probs=52.9
Q ss_pred ceEEEEeeccCC-------ChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEecc
Q psy10250 269 HMKTILAVGELK-------TSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGG 341 (387)
Q Consensus 269 ~lKvIlEt~~L~-------t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGG 341 (387)
.+-||-|..--+ +.+...+.++...++||+.|--.|=-...+-.++ .++.+++.+.-.+-+| |+
T Consensus 10 ~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~-------~~~~i~~~v~iPi~~~--~~ 80 (217)
T cd00331 10 GLGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLE-------DLRAVREAVSLPVLRK--DF 80 (217)
T ss_pred CceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHH-------HHHHHHHhcCCCEEEC--Ce
Confidence 367888875441 2233667888899999999865542222223343 4555555554455555 89
Q ss_pred CCCHHHHHHHHHHHHHhcCCCc
Q psy10250 342 ISTFEDSVRWIYLVLIMLGPDW 363 (387)
Q Consensus 342 Irt~~~a~~~i~l~~~~~Ga~w 363 (387)
|++.+++..++ ++|+++
T Consensus 81 i~~~~~v~~~~-----~~Gad~ 97 (217)
T cd00331 81 IIDPYQIYEAR-----AAGADA 97 (217)
T ss_pred ecCHHHHHHHH-----HcCCCE
Confidence 99999999888 599963
No 330
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=76.83 E-value=34 Score=32.46 Aligned_cols=71 Identities=11% Similarity=0.058 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhh-HhHHHHHHHH---HHHcCCCceEeEe-------ccCCCHHHHHHH
Q psy10250 283 ENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAG-IIMCSAIKHF---HKLSGKKIGLKPA-------GGISTFEDSVRW 351 (387)
Q Consensus 283 e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~-~~m~~~v~~~---~~~~~~~~gIKas-------GGIrt~~~a~~~ 351 (387)
+.+.++++.|.+.|+.+|-+.+|+.+.+-+.+.. ..+.+.++.+ .+..|-++++-+- -.+.|.+++..+
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~~~~~~~~~~~~~l 164 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIPGFHLTGTRQALKL 164 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCCCCccCCHHHHHHH
Confidence 3467889999999999999888875544444332 2233333333 3334667788752 257899999999
Q ss_pred HH
Q psy10250 352 IY 353 (387)
Q Consensus 352 i~ 353 (387)
+.
T Consensus 165 l~ 166 (258)
T PRK09997 165 ID 166 (258)
T ss_pred HH
Confidence 96
No 331
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=76.68 E-value=39 Score=36.37 Aligned_cols=140 Identities=13% Similarity=0.064 Sum_probs=84.5
Q ss_pred HHHHHHCCCCeeeeecCch-----hhhcCChhHHHHHHHHHHHHhCC-CcceEEEEe---eccCCChHHHHHHHHHHHHc
Q psy10250 225 IELLAKQKVDEVDIVIQRS-----LVLNNQWPELFSEVKQMKEKCGE-KIHMKTILA---VGELKTSENIYCASMTAMFA 295 (387)
Q Consensus 225 a~~Ai~~GAdEID~Vin~~-----~lk~g~~~~v~~Ei~~v~~~~~~-~~~lKvIlE---t~~L~t~e~i~~a~~ia~~a 295 (387)
.+.+++.|++.|.+++..+ ..+....+++.+.+...++.+.. +..+-+..| -++-.+++-+.+.|+.+.++
T Consensus 87 ~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~a 166 (526)
T TIGR00977 87 LQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQA 166 (526)
T ss_pred HHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHhC
Confidence 4556667888888876553 22334678888888887777754 223334455 34444678889999999999
Q ss_pred CCCEEEc--CCCCCCCCCChhhhHhHHHHHHHHHHHcCCC-ceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceee
Q psy10250 296 GSDFIKT--STGKEKTNATIPAGIIMCSAIKHFHKLSGKK-IGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIG 372 (387)
Q Consensus 296 GaDfVKT--STGf~~~gat~~~~~~m~~~v~~~~~~~~~~-~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIG 372 (387)
|+|-|-- .+| .++|..+..+++. +++.++.. +++..== =+-+..|-.+..+ ++|++|++...+=||
T Consensus 167 Gad~i~i~DTvG----~~~P~~v~~li~~---l~~~~~~~~i~vH~HN-D~GlAvANslaAv---~AGA~~Vd~TinGiG 235 (526)
T TIGR00977 167 GADWLVLCDTNG----GTLPHEISEITTK---VKRSLKQPQLGIHAHN-DSGTAVANSLLAV---EAGATMVQGTINGYG 235 (526)
T ss_pred CCCeEEEecCCC----CcCHHHHHHHHHH---HHHhCCCCEEEEEECC-CCChHHHHHHHHH---HhCCCEEEEeccccc
Confidence 9997654 444 4788776665444 44555432 4444421 0112222233222 689988876666666
Q ss_pred ccc
Q psy10250 373 ASS 375 (387)
Q Consensus 373 tSs 375 (387)
-..
T Consensus 236 ERa 238 (526)
T TIGR00977 236 ERC 238 (526)
T ss_pred Ccc
Confidence 643
No 332
>PLN02334 ribulose-phosphate 3-epimerase
Probab=76.65 E-value=68 Score=30.21 Aligned_cols=115 Identities=13% Similarity=0.085 Sum_probs=61.8
Q ss_pred HHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHc-CCCEEE--
Q psy10250 225 IELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFA-GSDFIK-- 301 (387)
Q Consensus 225 a~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~a-GaDfVK-- 301 (387)
.+.+.+.|||-|=+ ..+. -..+...+.++.+++ . -+++-+-+..- |+.+..+ ...+. |+|||=
T Consensus 81 ~~~~~~~gad~v~v--H~~q---~~~d~~~~~~~~i~~---~--g~~iGls~~~~-t~~~~~~---~~~~~~~~Dyi~~~ 146 (229)
T PLN02334 81 VPDFAKAGASIFTF--HIEQ---ASTIHLHRLIQQIKS---A--GMKAGVVLNPG-TPVEAVE---PVVEKGLVDMVLVM 146 (229)
T ss_pred HHHHHHcCCCEEEE--eecc---ccchhHHHHHHHHHH---C--CCeEEEEECCC-CCHHHHH---HHHhccCCCEEEEE
Confidence 45567789887532 3331 012445566666654 2 13555555322 3333322 12344 399982
Q ss_pred -cCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCcc
Q psy10250 302 -TSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 364 (387)
Q Consensus 302 -TSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~ 364 (387)
.-.|++.....+ ..++.++.+++... .+.|=+.||| |.+++..++ .+|++.+
T Consensus 147 ~v~pg~~~~~~~~----~~~~~i~~~~~~~~-~~~I~a~GGI-~~e~i~~l~-----~aGad~v 199 (229)
T PLN02334 147 SVEPGFGGQSFIP----SMMDKVRALRKKYP-ELDIEVDGGV-GPSTIDKAA-----EAGANVI 199 (229)
T ss_pred EEecCCCccccCH----HHHHHHHHHHHhCC-CCcEEEeCCC-CHHHHHHHH-----HcCCCEE
Confidence 222332221111 23355666666543 3568889999 789999999 5898643
No 333
>PRK07360 FO synthase subunit 2; Reviewed
Probab=76.58 E-value=80 Score=32.20 Aligned_cols=47 Identities=17% Similarity=0.099 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcC-ChhHHHHHHHHHHHH
Q psy10250 215 QYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNN-QWPELFSEVKQMKEK 263 (387)
Q Consensus 215 ~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g-~~~~v~~Ei~~v~~~ 263 (387)
..+.+.-+..++++.+.|++++-+| -|.-.+. +++++.+=++.+++.
T Consensus 90 ~ls~eeI~~~a~~a~~~G~~~i~l~--~G~~p~~~~~e~~~~~i~~ik~~ 137 (371)
T PRK07360 90 WLTIAEILEKAAEAVKRGATEVCIQ--GGLHPAADSLEFYLEILEAIKEE 137 (371)
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEEc--cCCCCCCCcHHHHHHHHHHHHHh
Confidence 3578888889999999999999998 2322222 356666666666653
No 334
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=76.43 E-value=7.1 Score=36.63 Aligned_cols=89 Identities=16% Similarity=0.104 Sum_probs=52.2
Q ss_pred CCCCCCC--HHHHHHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHccc----CccEEEEEeccCCCCHHH
Q psy10250 2 FPSGQYL--LETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEE----KIHMKTILAVGELKTSEN 75 (387)
Q Consensus 2 FP~G~~~--~~~K~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~----~~~~KvIlEt~~L~~~e~ 75 (387)
|+.|... .+.-+..+++.++.||+-||+=....+=-. .+-...+|+..++.+.+. ..-+-+-|.|. +.+-
T Consensus 9 f~~g~~~~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~-~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~---~~~v 84 (210)
T PF00809_consen 9 FSDGGRKFSEDEAVKRAREQVEAGADIIDIGAESTRPGA-TPVSEEEEMERLVPVLQAIREENPDVPLSIDTF---NPEV 84 (210)
T ss_dssp TTTTTCHHHHHHHHHHHHHHHHTT-SEEEEESSTSSTTS-SSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEES---SHHH
T ss_pred CcccCcccCHHHHHHHHHHHHHhcCCEEEecccccCCCC-CcCCHHHHHHHHHHHHHHHhccCCCeEEEEECC---CHHH
Confidence 5666433 233455699999999999998644321111 233344555555544321 01356778884 3443
Q ss_pred HHHHHHHHHHcCCCEEecCCCCC
Q psy10250 76 IYYASMTAMFAGSDFIKTSTGKE 98 (387)
Q Consensus 76 i~~a~~~a~~ag~dfvKTSTG~~ 98 (387)
++ .|.++|+++|-.++|+.
T Consensus 85 ~~----~aL~~g~~~ind~~~~~ 103 (210)
T PF00809_consen 85 AE----AALKAGADIINDISGFE 103 (210)
T ss_dssp HH----HHHHHTSSEEEETTTTS
T ss_pred HH----HHHHcCcceEEeccccc
Confidence 33 34566999999999975
No 335
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=76.41 E-value=56 Score=31.01 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=25.1
Q ss_pred HHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 323 IKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 323 v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
++.+.+. ..+.|=++|||||.+++..++ .+|++
T Consensus 181 ~~~i~~~--~~ipvi~~GGi~s~edi~~l~-----~~G~~ 213 (233)
T cd04723 181 LERLAAR--ADIPVIAAGGVRSVEDLELLK-----KLGAS 213 (233)
T ss_pred HHHHHHh--cCCCEEEeCCCCCHHHHHHHH-----HcCCC
Confidence 3444443 357789999999999999999 47873
No 336
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=76.31 E-value=39 Score=34.99 Aligned_cols=113 Identities=14% Similarity=0.093 Sum_probs=74.2
Q ss_pred cCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeecc-CCChHHHHHHHHHHHHcCCCEEEcCCCC---------C-C
Q psy10250 240 IQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGE-LKTSENIYCASMTAMFAGSDFIKTSTGK---------E-K 308 (387)
Q Consensus 240 in~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~-L~t~e~i~~a~~ia~~aGaDfVKTSTGf---------~-~ 308 (387)
.|.+.+-+.-.++..+|++.+++..++ .-+|.-..- - +.++..+.++.+.++|+|++--.-+. + .
T Consensus 87 ~N~~~~s~~g~~~~l~~i~~~k~~~~~---~pvIaSi~~~~-s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~ 162 (385)
T PLN02495 87 QNIELISDRPFETMLAEFKQLKEEYPD---RILIASIMEEY-NKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAA 162 (385)
T ss_pred cCcccccccCHHHHHHHHHHHHhhCCC---CcEEEEccCCC-CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchh
Confidence 366666666788999999888765543 345555522 3 56788888888899999999854431 0 1
Q ss_pred CCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCc
Q psy10250 309 TNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 363 (387)
Q Consensus 309 ~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w 363 (387)
.+.+++.+..+++.|+. .+...+-+|.+-.+.+..+...... +.|++-
T Consensus 163 ~gq~~e~~~~i~~~Vk~---~~~iPv~vKLsPn~t~i~~ia~aa~----~~Gadg 210 (385)
T PLN02495 163 VGQDCDLLEEVCGWINA---KATVPVWAKMTPNITDITQPARVAL----KSGCEG 210 (385)
T ss_pred hccCHHHHHHHHHHHHH---hhcCceEEEeCCChhhHHHHHHHHH----HhCCCE
Confidence 23566666656666644 4567899999987766655444332 577753
No 337
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=76.27 E-value=25 Score=34.21 Aligned_cols=89 Identities=16% Similarity=0.165 Sum_probs=51.1
Q ss_pred CCCCCC--CCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHH---HHHHHHHhCCCcceEEEEeeccCCChHH
Q psy10250 210 GFPSGQ--YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSE---VKQMKEKCGEKIHMKTILAVGELKTSEN 284 (387)
Q Consensus 210 gFP~G~--~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~E---i~~v~~~~~~~~~lKvIlEt~~L~t~e~ 284 (387)
+|=.|. ...+.-+..+++.++.||+-||+-.--..--. +.-...+| +..+++......-+.+-+.|. +++.
T Consensus 12 SF~dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~-~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~---~~~v 87 (257)
T TIGR01496 12 SFSDGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGA-DRVSPEEELNRVVPVIKALRDQPDVPISVDTY---RAEV 87 (257)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC-CCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCC---CHHH
Confidence 455554 34577778899999999999999310000001 11123345 444444444311345666664 3343
Q ss_pred HHHHHHHHHHcCCCEEEcCCCC
Q psy10250 285 IYCASMTAMFAGSDFIKTSTGK 306 (387)
Q Consensus 285 i~~a~~ia~~aGaDfVKTSTGf 306 (387)
.+.|+++|+|+|..-+|+
T Consensus 88 ----i~~al~~G~~iINsis~~ 105 (257)
T TIGR01496 88 ----ARAALEAGADIINDVSGG 105 (257)
T ss_pred ----HHHHHHcCCCEEEECCCC
Confidence 345666799999988887
No 338
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=75.90 E-value=16 Score=34.17 Aligned_cols=62 Identities=23% Similarity=0.290 Sum_probs=41.4
Q ss_pred HHHHHHHHcCCCEEEcC--C-CCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 287 CASMTAMFAGSDFIKTS--T-GKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 287 ~a~~ia~~aGaDfVKTS--T-Gf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
..++...+.|+|.+--. + .+...+...+ .++.+++.+ .+.+=+.||||+++++..++ ..|++
T Consensus 33 ~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~-------~i~~i~~~~--~~pv~~~GgI~~~e~~~~~~-----~~Gad 97 (234)
T cd04732 33 EVAKKWEEAGAKWLHVVDLDGAKGGEPVNLE-------LIEEIVKAV--GIPVQVGGGIRSLEDIERLL-----DLGVS 97 (234)
T ss_pred HHHHHHHHcCCCEEEEECCCccccCCCCCHH-------HHHHHHHhc--CCCEEEeCCcCCHHHHHHHH-----HcCCC
Confidence 34555667899876543 2 2333444443 455555554 36677899999999999999 48984
No 339
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=75.73 E-value=44 Score=31.98 Aligned_cols=119 Identities=14% Similarity=0.154 Sum_probs=71.4
Q ss_pred CCHHHHHHHHHHHHH-CCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHH
Q psy10250 216 YLLETRLHEIELLAK-QKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMF 294 (387)
Q Consensus 216 ~~~e~K~~Ea~~Ai~-~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~ 294 (387)
.+.+.-+.|++...+ .| . .+++-+..-.+| +++++.+...+..+-+ |... +.+|. .+|..
T Consensus 64 ~~~~~mi~eA~~l~~~~~-~--nv~VKIP~T~~G--------l~Ai~~L~~~Gi~vn~---T~if-s~~Qa----~~Aa~ 124 (222)
T PRK12656 64 QDYEGILKDAHEIRRQCG-D--DVYIKVPVTPAG--------LAAIKTLKAEGYHITA---TAIY-TVFQG----LLAIE 124 (222)
T ss_pred CCHHHHHHHHHHHHHHhC-C--CEEEEeCCCHHH--------HHHHHHHHHCCCceEE---eeeC-CHHHH----HHHHH
Confidence 467778888888763 45 2 255545443333 5555555443332222 2234 55555 44666
Q ss_pred cCCCEEEcCCCCCC-CCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 295 AGSDFIKTSTGKEK-TNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 295 aGaDfVKTSTGf~~-~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
+||+||--=-|.-. .|-.+ ..+ +++++.+.+..+.+.+|.+| -+|+.+|+.+.. .+|++
T Consensus 125 aGa~yvsPyvgRi~d~g~D~--~~~-i~~i~~~~~~~~~~tkILaA-S~r~~~~v~~a~-----~~G~d 184 (222)
T PRK12656 125 AGADYLAPYYNRMENLNIDS--NAV-IGQLAEAIDRENSDSKILAA-SFKNVAQVNKAF-----ALGAQ 184 (222)
T ss_pred CCCCEEecccchhhhcCCCH--HHH-HHHHHHHHHhcCCCCEEEEE-ecCCHHHHHHHH-----HcCCC
Confidence 99999976556521 12222 112 24555555566778999886 799999999998 58985
No 340
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=75.64 E-value=71 Score=30.40 Aligned_cols=121 Identities=11% Similarity=0.109 Sum_probs=68.3
Q ss_pred CCCeEEEEECCc--------------cHHHHHHHhhhcCCCCCceEEEEec----CCCCCCCCHHHH-------HHHHHH
Q psy10250 173 NVHTAAVCVYPA--------------RVVDVIKVLDRENARDDVKVASVAA----GFPSGQYLLETR-------LHEIEL 227 (387)
Q Consensus 173 ~~~~~aVcV~P~--------------~v~~a~~~L~~~~~~~~v~v~tVvi----gFP~G~~~~e~K-------~~Ea~~ 227 (387)
++||.+|-+++. .....++.+++ .++++.++.. .||++....+.+ ..-++.
T Consensus 27 ~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~ 102 (284)
T PRK13210 27 ELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYE----TGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIRL 102 (284)
T ss_pred HcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHH----cCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 567777766431 24556777775 6888876522 257766554432 233456
Q ss_pred HHHCCCCeeeeecCchhhhc----CChhHHHHHHHHHHHHhCCCcceEEEEeec---cCCChHHHHHHHHHHHHcCCCEE
Q psy10250 228 LAKQKVDEVDIVIQRSLVLN----NQWPELFSEVKQMKEKCGEKIHMKTILAVG---ELKTSENIYCASMTAMFAGSDFI 300 (387)
Q Consensus 228 Ai~~GAdEID~Vin~~~lk~----g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~---~L~t~e~i~~a~~ia~~aGaDfV 300 (387)
|...|++-|=+ ........ ..|+...+.++.+.+.+.. .-+++-+|+. .+.+.+ .+..+....+.+.+
T Consensus 103 a~~lG~~~v~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~-~gv~l~lE~~~~~~~~~~~---~~~~l~~~v~~~~~ 177 (284)
T PRK13210 103 AQDLGIRTIQL-AGYDVYYEEKSEETRQRFIEGLAWAVEQAAA-AQVMLAVEIMDTPFMNSIS---KWKKWDKEIDSPWL 177 (284)
T ss_pred HHHhCCCEEEE-CCcccccccccHHHHHHHHHHHHHHHHHHHH-hCCEEEEEecCccccCCHH---HHHHHHHHcCCCce
Confidence 77789998732 11111111 1234555567777766654 3589999994 343433 34455555576766
Q ss_pred Ec
Q psy10250 301 KT 302 (387)
Q Consensus 301 KT 302 (387)
+-
T Consensus 178 ~~ 179 (284)
T PRK13210 178 TV 179 (284)
T ss_pred eE
Confidence 64
No 341
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=75.40 E-value=20 Score=34.53 Aligned_cols=174 Identities=18% Similarity=0.153 Sum_probs=88.0
Q ss_pred cccccCCCCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCcc----HHHHHHHhhhcCCCCCceEEEEec
Q psy10250 134 IDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPAR----VVDVIKVLDRENARDDVKVASVAA 209 (387)
Q Consensus 134 ID~T~L~~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~----v~~a~~~L~~~~~~~~v~v~tVvi 209 (387)
...|+|.|+-...+ ...+.+. +-+..++.|--+. ...+...++.. +++++ +
T Consensus 9 ~h~~liDPdK~~~~--~~~~~~~----------------~~gtDai~VGGS~~~~~~d~vv~~ik~~---~~lPv----i 63 (230)
T PF01884_consen 9 LHATLIDPDKPNPE--EALEAAC----------------ESGTDAIIVGGSDTGVTLDNVVALIKRV---TDLPV----I 63 (230)
T ss_dssp -EEEEE-TTSS-HH--HHHHHHH----------------CTT-SEEEEE-STHCHHHHHHHHHHHHH---SSS-E----E
T ss_pred ceEEEECCCCCCcH--HHHHHHH----------------hcCCCEEEECCCCCccchHHHHHHHHhc---CCCCE----E
Confidence 45567777654432 3333333 4577888887665 35555666652 55664 3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHH-HHHHHHHHhCCCcceEEEEee------------
Q psy10250 210 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFS-EVKQMKEKCGEKIHMKTILAV------------ 276 (387)
Q Consensus 210 gFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~-Ei~~v~~~~~~~~~lKvIlEt------------ 276 (387)
=||.+..... .+||- ++=.+.|.++|..++.. .+.... ..+. ..+.+|-|-
T Consensus 64 lfPg~~~~vs-----------~~aDa---il~~svlNs~n~~~iig~~~~aa~-~~~~-~~~e~ip~gYivi~~g~~v~~ 127 (230)
T PF01884_consen 64 LFPGSPSQVS-----------PGADA---ILFPSVLNSRNPYWIIGAQVEAAP-LIKK-LGLEVIPTGYIVINPGSKVAR 127 (230)
T ss_dssp EETSTCCG-------------TTSSE---EEEEEETTBSSTTTTTHHHHHHHH-HCHH-HHCCEEEEEEEEESTTSHHHH
T ss_pred EeCCChhhcC-----------cCCCE---EEEEEEecCCCcchHhhHHHHHHH-HHHh-hcceecceEEEEECCCCceEE
Confidence 6898877653 45554 44455666777777653 222222 1211 123333221
Q ss_pred ------ccCCChHHHHHHHHHHHH-cCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHH
Q psy10250 277 ------GELKTSENIYCASMTAMF-AGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSV 349 (387)
Q Consensus 277 ------~~L~t~e~i~~a~~ia~~-aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~ 349 (387)
.-+ +.+++..+..+|.+ -|-.+|=-=-|=|..+.-++ .|. ..++.. ..+.+=..|||||.++|.
T Consensus 128 v~~a~pi~~-~~~~iaa~~alA~~~~g~~~iYLEaGSGa~~~v~~---~v~----~~~~~~-~~~~LivGGGIrs~e~A~ 198 (230)
T PF01884_consen 128 VTGARPIPL-DKPEIAAAAALAAEYLGMPIIYLEAGSGAYGPVPE---EVI----AAVKKL-SDIPLIVGGGIRSPEQAR 198 (230)
T ss_dssp HTTB------SHHHHHHHHHHHHHHTT-SEEEEE--TTSSS-HHH---HHH----HHHHHS-SSSEEEEESS--SHHHHH
T ss_pred eecceecCC-CcHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCccH---HHH----HHHHhc-CCccEEEeCCcCCHHHHH
Confidence 123 34566666554444 58875544333222222222 233 233333 567788899999999999
Q ss_pred HHHHHHHHhcCCC
Q psy10250 350 RWIYLVLIMLGPD 362 (387)
Q Consensus 350 ~~i~l~~~~~Ga~ 362 (387)
.+. ++|||
T Consensus 199 ~~~-----~aGAD 206 (230)
T PF01884_consen 199 EMA-----EAGAD 206 (230)
T ss_dssp HHH-----CTTSS
T ss_pred HHH-----HCCCC
Confidence 999 69985
No 342
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=75.24 E-value=9.8 Score=38.15 Aligned_cols=81 Identities=23% Similarity=0.272 Sum_probs=46.0
Q ss_pred eEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCCh---hhhHhHHHHHHHHHHHcCCCceEeEeccCCCHH
Q psy10250 270 MKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATI---PAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFE 346 (387)
Q Consensus 270 lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~---~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~ 346 (387)
+|||.-.+-+ ++ .+.+.++|+|.|- -.|+..+|=+- +.... -+..+++... +.|=++|||-|.+
T Consensus 137 i~v~~~v~s~---~~----A~~a~~~G~D~iv-~qG~eAGGH~g~~~~~~~~---L~~~v~~~~~--iPViaAGGI~dg~ 203 (330)
T PF03060_consen 137 IKVIPQVTSV---RE----ARKAAKAGADAIV-AQGPEAGGHRGFEVGSTFS---LLPQVRDAVD--IPVIAAGGIADGR 203 (330)
T ss_dssp -EEEEEESSH---HH----HHHHHHTT-SEEE-EE-TTSSEE---SSG-HHH---HHHHHHHH-S--S-EEEESS--SHH
T ss_pred CccccccCCH---HH----HHHhhhcCCCEEE-EeccccCCCCCccccceee---HHHHHhhhcC--CcEEEecCcCCHH
Confidence 6888766533 33 3567899999985 56775543222 21122 2333344433 8889999999999
Q ss_pred HHHHHHHHHHHhcCCCccCCCcceeec
Q psy10250 347 DSVRWIYLVLIMLGPDWLNKDLFRIGA 373 (387)
Q Consensus 347 ~a~~~i~l~~~~~Ga~w~~~~~~RIGt 373 (387)
++.+++ .+|++ ..-+||
T Consensus 204 ~iaaal-----~lGA~-----gV~~GT 220 (330)
T PF03060_consen 204 GIAAAL-----ALGAD-----GVQMGT 220 (330)
T ss_dssp HHHHHH-----HCT-S-----EEEESH
T ss_pred HHHHHH-----HcCCC-----EeecCC
Confidence 999999 59985 456666
No 343
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=75.18 E-value=52 Score=30.98 Aligned_cols=120 Identities=13% Similarity=0.052 Sum_probs=69.9
Q ss_pred CCCeEEEEEC---CccHHHHHHHhhhcCCCCCceEEEEecCCCCCCC----------C--HHHHH----HHHHHHHHCCC
Q psy10250 173 NVHTAAVCVY---PARVVDVIKVLDRENARDDVKVASVAAGFPSGQY----------L--LETRL----HEIELLAKQKV 233 (387)
Q Consensus 173 ~~~~~aVcV~---P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~----------~--~e~K~----~Ea~~Ai~~GA 233 (387)
++||.+|=+. +......++.+++ .++++++. ++|.+.. + .+... .-++.|.+.|+
T Consensus 25 e~G~~~vEl~~~~~~~~~~l~~~l~~----~gl~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~ 98 (254)
T TIGR03234 25 QAGFTGVEYLFPYDWDAEALKARLAA----AGLEQVLF--NLPAGDWAAGERGIACLPGREEEFREGVALAIAYARALGC 98 (254)
T ss_pred HcCCCEEEecCCccCCHHHHHHHHHH----cCCeEEEE--eCCCCccccCCCccccCCccHHHHHHHHHHHHHHHHHhCC
Confidence 5677777664 3356667777775 68998776 5665421 1 11111 23456778899
Q ss_pred CeeeeecCchhhhc-C----ChhHHHHHHHHHHHHhCCCcceEEEEeec--------cCCChHHHHHHHHHHHHcCCCEE
Q psy10250 234 DEVDIVIQRSLVLN-N----QWPELFSEVKQMKEKCGEKIHMKTILAVG--------ELKTSENIYCASMTAMFAGSDFI 300 (387)
Q Consensus 234 dEID~Vin~~~lk~-g----~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~--------~L~t~e~i~~a~~ia~~aGaDfV 300 (387)
.-|=++ .|..-. . .|+.+.+-++++.+.+.+ .-+++-+|+. .+.+.+ .+.++..+.+.+.+
T Consensus 99 ~~i~~~--~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~-~gi~l~lE~~~~~~~~~~~l~t~~---~~~~li~~v~~~~~ 172 (254)
T TIGR03234 99 PQVNCL--AGKRPAGVSPEEARATLVENLRYAADALDR-IGLTLLIEPINSFDMPGFFLTTTE---QALAVIDDVGRENL 172 (254)
T ss_pred CEEEEC--cCCCCCCCCHHHHHHHHHHHHHHHHHHHHh-cCCEEEEEECCcccCCCChhcCHH---HHHHHHHHhCCCCE
Confidence 976433 332211 1 134444556777766654 4589999973 244444 45566777777777
Q ss_pred EcCC
Q psy10250 301 KTST 304 (387)
Q Consensus 301 KTST 304 (387)
+..=
T Consensus 173 ~i~~ 176 (254)
T TIGR03234 173 KLQY 176 (254)
T ss_pred eEee
Confidence 6643
No 344
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=74.95 E-value=1.2e+02 Score=32.32 Aligned_cols=132 Identities=11% Similarity=0.010 Sum_probs=79.8
Q ss_pred CCCeeeeecCchhh-----hcCChhHHHHHHHHHHHHhCC-CcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEc--C
Q psy10250 232 KVDEVDIVIQRSLV-----LNNQWPELFSEVKQMKEKCGE-KIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKT--S 303 (387)
Q Consensus 232 GAdEID~Vin~~~l-----k~g~~~~v~~Ei~~v~~~~~~-~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKT--S 303 (387)
|.+.|.+++..+-+ +....+++.+.+...++.+.. +..+-+=.|...-.+++.+.+.++.+.++|+|-|-= .
T Consensus 89 ~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DT 168 (494)
T TIGR00973 89 EKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAINAGATTINIPDT 168 (494)
T ss_pred CCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 67889999886433 234567888888888777754 234555566665656788889999999999997653 4
Q ss_pred CCCCCCCCChhhhHhHHHHHHHHHHHcCCC----ceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeecc
Q psy10250 304 TGKEKTNATIPAGIIMCSAIKHFHKLSGKK----IGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 374 (387)
Q Consensus 304 TGf~~~gat~~~~~~m~~~v~~~~~~~~~~----~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtS 374 (387)
+| .++|+.+..+++.+ ++.++.. +++..==- +-+..|-.+..+ ++|++|++...+=||-.
T Consensus 169 vG----~~~P~~~~~~i~~l---~~~~~~~~~v~l~~H~HND-~GlAvANalaAv---~aGa~~vd~tv~GlGER 232 (494)
T TIGR00973 169 VG----YALPAEYGNLIKGL---RENVPNIDKAILSVHCHND-LGLAVANSLAAV---QNGARQVECTINGIGER 232 (494)
T ss_pred CC----CCCHHHHHHHHHHH---HHhhccccCceEEEEeCCC-CChHHHHHHHHH---HhCCCEEEEEeeccccc
Confidence 44 46787766655444 4455432 33332100 011222222221 58988776655556543
No 345
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=74.95 E-value=47 Score=34.29 Aligned_cols=108 Identities=13% Similarity=0.021 Sum_probs=64.5
Q ss_pred CChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCC------CC----CChhhhH
Q psy10250 248 NQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEK------TN----ATIPAGI 317 (387)
Q Consensus 248 g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~------~g----at~~~~~ 317 (387)
.-.++..++++.+.+..++ .+ +|+-..--.+.++...+++.+.++|+|+|--..|.-. .| -.++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~-~p--~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~ 157 (420)
T PRK08318 81 RPLEVNLREIRRVKRDYPD-RA--LIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVE 157 (420)
T ss_pred cCHHHHHHHHHHHHhhCCC-ce--EEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHH
Confidence 3345555666666544433 22 4554322214677889999999999999986655311 11 2343333
Q ss_pred hHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccC
Q psy10250 318 IMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLN 365 (387)
Q Consensus 318 ~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~ 365 (387)
+-++.+++.+...+-+|.+-...+..+..+.+. +.|++++.
T Consensus 158 ---~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~----~~Gadgi~ 198 (420)
T PRK08318 158 ---MYTRWVKRGSRLPVIVKLTPNITDIREPARAAK----RGGADAVS 198 (420)
T ss_pred ---HHHHHHHhccCCcEEEEcCCCcccHHHHHHHHH----HCCCCEEE
Confidence 344455555667899999977666544444332 68998876
No 346
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=74.84 E-value=19 Score=36.95 Aligned_cols=79 Identities=18% Similarity=0.151 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCCeeeeecchhHH-----hcCChhHHHHHHHHHHHHccc-CccEEEEEeccCCCCHHHHHHHHHHHHHc
Q psy10250 13 LHEIELLAKQKVDEVDIVIQRSLV-----LNNQWPELFSEVKQMKEKCEE-KIHMKTILAVGELKTSENIYYASMTAMFA 86 (387)
Q Consensus 13 ~~E~~~a~~~GA~EiD~Vin~~~l-----k~g~~~~v~~ei~~v~~~~~~-~~~~KvIlEt~~L~~~e~i~~a~~~a~~a 86 (387)
...++.|++.|++.|.+++..+.+ .....++..+.+...++.+.. +..+-+-.|-+.-.+.+.+.+.++.+.++
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~ 157 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEA 157 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhC
Confidence 456788999999999999988765 234567777878777776643 34555556666555788888999999999
Q ss_pred CCCEE
Q psy10250 87 GSDFI 91 (387)
Q Consensus 87 g~dfv 91 (387)
|+|.|
T Consensus 158 Ga~~I 162 (378)
T PRK11858 158 GADRV 162 (378)
T ss_pred CCCEE
Confidence 99974
No 347
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=74.83 E-value=16 Score=36.25 Aligned_cols=96 Identities=14% Similarity=0.136 Sum_probs=55.7
Q ss_pred ceEEEEecC-----CCCCC--CCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHH---HHhCCCcceE
Q psy10250 202 VKVASVAAG-----FPSGQ--YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMK---EKCGEKIHMK 271 (387)
Q Consensus 202 v~v~tVvig-----FP~G~--~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~---~~~~~~~~lK 271 (387)
..|-.+ ++ |=.|. ...+.-+.++++.+++|||=||+----..--. +.-...+|++++. +.... .++
T Consensus 15 ~~imGI-lNvTpDSFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~-~~v~~eeE~~Rv~pvI~~l~~--~~~ 90 (282)
T PRK11613 15 PHVMGI-LNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGA-AEVSVEEELDRVIPVVEAIAQ--RFE 90 (282)
T ss_pred ceEEEE-EcCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCC-CCCCHHHHHHHHHHHHHHHHh--cCC
Confidence 345555 34 44444 35788899999999999999998721111101 2223445655544 32222 123
Q ss_pred EEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCC
Q psy10250 272 TILAVGELKTSENIYCASMTAMFAGSDFIKTSTGK 306 (387)
Q Consensus 272 vIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf 306 (387)
+.|-..-. ..+ ..+.|+++|+|.|.--+|+
T Consensus 91 ~~ISIDT~-~~~----va~~AL~~GadiINDI~g~ 120 (282)
T PRK11613 91 VWISVDTS-KPE----VIRESAKAGAHIINDIRSL 120 (282)
T ss_pred CeEEEECC-CHH----HHHHHHHcCCCEEEECCCC
Confidence 34433333 223 3456778899999888886
No 348
>KOG0538|consensus
Probab=74.72 E-value=22 Score=35.93 Aligned_cols=86 Identities=24% Similarity=0.280 Sum_probs=63.1
Q ss_pred HHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCC-CC---CCCCCChhhhHhHHHHHHHHHHHc
Q psy10250 255 SEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTST-GK---EKTNATIPAGIIMCSAIKHFHKLS 330 (387)
Q Consensus 255 ~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTST-Gf---~~~gat~~~~~~m~~~v~~~~~~~ 330 (387)
++|+-++...+-|.++|=|+ +.++ ++.|.++|++-|=-|. |= ....||++ ++.+..+.+
T Consensus 213 ~Di~wLr~~T~LPIvvKGil-----t~eD-----A~~Ave~G~~GIIVSNHGgRQlD~vpAtI~-------~L~Evv~aV 275 (363)
T KOG0538|consen 213 KDIKWLRSITKLPIVVKGVL-----TGED-----ARKAVEAGVAGIIVSNHGGRQLDYVPATIE-------ALPEVVKAV 275 (363)
T ss_pred hhhHHHHhcCcCCeEEEeec-----ccHH-----HHHHHHhCCceEEEeCCCccccCcccchHH-------HHHHHHHHh
Confidence 46677777666567888765 3333 3568899999887766 21 12356664 666677788
Q ss_pred CCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 331 GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 331 ~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
++++.|=.=||||+-.|.++-+ .+||.
T Consensus 276 ~~ri~V~lDGGVR~G~DVlKAL-----ALGAk 302 (363)
T KOG0538|consen 276 EGRIPVFLDGGVRRGTDVLKAL-----ALGAK 302 (363)
T ss_pred cCceEEEEecCcccchHHHHHH-----hcccc
Confidence 9999999999999999999999 48983
No 349
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=74.56 E-value=40 Score=33.61 Aligned_cols=88 Identities=14% Similarity=0.078 Sum_probs=59.8
Q ss_pred ChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHH
Q psy10250 249 QWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHK 328 (387)
Q Consensus 249 ~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~ 328 (387)
..+.+++||+++++....+.-+-++.-+... ....+++++.|+++|-++-|. ++ +.++.+++
T Consensus 46 ~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~~------~~~~~~~~~~~v~~v~~~~g~------p~------~~i~~lk~ 107 (307)
T TIGR03151 46 PPDVVRKEIRKVKELTDKPFGVNIMLLSPFV------DELVDLVIEEKVPVVTTGAGN------PG------KYIPRLKE 107 (307)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEeeecCCCCH------HHHHHHHHhCCCCEEEEcCCC------cH------HHHHHHHH
Confidence 4688999999999876543445555543322 234567789999999764331 22 23444443
Q ss_pred HcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCcc
Q psy10250 329 LSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 364 (387)
Q Consensus 329 ~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~ 364 (387)
. |+|...-+.|.+.|.... .+|+|++
T Consensus 108 ~-----g~~v~~~v~s~~~a~~a~-----~~GaD~I 133 (307)
T TIGR03151 108 N-----GVKVIPVVASVALAKRME-----KAGADAV 133 (307)
T ss_pred c-----CCEEEEEcCCHHHHHHHH-----HcCCCEE
Confidence 2 678888899999999998 5899876
No 350
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=74.54 E-value=22 Score=35.52 Aligned_cols=111 Identities=10% Similarity=0.100 Sum_probs=69.4
Q ss_pred HHHHHHHHHCCCCeeeee--cCchhhhcC------ChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHH
Q psy10250 222 LHEIELLAKQKVDEVDIV--IQRSLVLNN------QWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAM 293 (387)
Q Consensus 222 ~~Ea~~Ai~~GAdEID~V--in~~~lk~g------~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~ 293 (387)
..+++.|-+.|++||-.- ++-...++| +. +.|+++++++. .|+=.+.=.+++ .=+++..
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd~~~~gg~~Rm~~p----~~I~aIk~~V~--iPVigk~Righ~-------~Ea~~L~ 93 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADP----KMIEEIMDAVS--IPVMAKARIGHF-------VEAQILE 93 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCchHhhcCCeeecCCH----HHHHHHHHhCC--CCeEEeehhhHH-------HHHHHHH
Confidence 467778888999997442 122233444 22 35567777763 566666666664 2246788
Q ss_pred HcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCcc
Q psy10250 294 FAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 364 (387)
Q Consensus 294 ~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~ 364 (387)
++|+|||= .|- --||.+ +.+...++.. ++-.-.|++|+++|+.=+ .+|++++
T Consensus 94 ~~GvDiID-~Te----~lrpad-----~~~~~~K~~f----~~~fmad~~~l~EAlrai-----~~GadmI 145 (293)
T PRK04180 94 ALGVDYID-ESE----VLTPAD-----EEYHIDKWDF----TVPFVCGARNLGEALRRI-----AEGAAMI 145 (293)
T ss_pred HcCCCEEe-ccC----CCCchH-----HHHHHHHHHc----CCCEEccCCCHHHHHHHH-----HCCCCee
Confidence 99999994 333 233321 2334444433 444567999999999999 5899643
No 351
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=74.50 E-value=19 Score=36.12 Aligned_cols=71 Identities=15% Similarity=0.081 Sum_probs=44.8
Q ss_pred cCCCeeeeec---chhHHh-cCChhHHHHHHHHHHHHcc-----cCccEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEe
Q psy10250 22 QKVDEVDIVI---QRSLVL-NNQWPELFSEVKQMKEKCE-----EKIHMKTILAVGELKTSENIYYASMTAMFAGSDFIK 92 (387)
Q Consensus 22 ~GA~EiD~Vi---n~~~lk-~g~~~~v~~ei~~v~~~~~-----~~~~~KvIlEt~~L~~~e~i~~a~~~a~~ag~dfvK 92 (387)
.+||-||+=+ |..... ..+.+.+.+=+++|++... -.+.+|+- +.+ +.+++...++.+.++|+|+|.
T Consensus 159 ~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~---~~~-~~~~~~~ia~~l~~aGad~I~ 234 (327)
T cd04738 159 PYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIA---PDL-SDEELEDIADVALEHGVDGII 234 (327)
T ss_pred hhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeC---CCC-CHHHHHHHHHHHHHcCCcEEE
Confidence 3577766533 221111 2244566666677777664 24667773 444 567888899999999999998
Q ss_pred cCCC
Q psy10250 93 TSTG 96 (387)
Q Consensus 93 TSTG 96 (387)
.+.+
T Consensus 235 ~~n~ 238 (327)
T cd04738 235 ATNT 238 (327)
T ss_pred EECC
Confidence 5544
No 352
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=74.44 E-value=6.3 Score=37.67 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=37.5
Q ss_pred HHHHHHcCCCEEEc--CCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 289 SMTAMFAGSDFIKT--STGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 289 ~~ia~~aGaDfVKT--STGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
++.-.+.|+|++-- -.|-...+... +.|+.+.+.+ .+.|=+.|||||++++..++ .+|++
T Consensus 38 a~~~~~~g~~~l~ivDLd~~~g~~~n~-------~~i~~i~~~~--~~pv~vgGGirs~edv~~~l-----~~Ga~ 99 (241)
T PRK14024 38 ALAWQRDGAEWIHLVDLDAAFGRGSNR-------ELLAEVVGKL--DVKVELSGGIRDDESLEAAL-----ATGCA 99 (241)
T ss_pred HHHHHHCCCCEEEEEeccccCCCCccH-------HHHHHHHHHc--CCCEEEcCCCCCHHHHHHHH-----HCCCC
Confidence 34455688876542 11211223333 3455555554 36678899999999999999 48983
No 353
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=74.43 E-value=84 Score=30.18 Aligned_cols=136 Identities=13% Similarity=0.058 Sum_probs=78.3
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHCCCCeeee---ecC--chhh---hcCChhHHHHHHHHHHHHhCCCcceEEEEeeccC-
Q psy10250 209 AGFPSGQYLLETRLHEIELLAKQKVDEVDI---VIQ--RSLV---LNNQWPELFSEVKQMKEKCGEKIHMKTILAVGEL- 279 (387)
Q Consensus 209 igFP~G~~~~e~K~~Ea~~Ai~~GAdEID~---Vin--~~~l---k~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L- 279 (387)
++.|.|+...+.-..-++..++.|++-|=+ +.+ -+.+ ..=..+...+-|++++++..+-..+-||-=|.-+
T Consensus 74 ~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~ 153 (243)
T cd00377 74 ADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALL 153 (243)
T ss_pred EEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchh
Confidence 489999887755556688888899988654 111 1111 1113455666677777766530134555543332
Q ss_pred ---CChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHH
Q psy10250 280 ---KTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVL 356 (387)
Q Consensus 280 ---~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~ 356 (387)
...++..+=++...++|||-|= .++..+++ .++.+.+..+..+-+-...|-+ .-....|-
T Consensus 154 ~~~~~~~eai~Ra~ay~~AGAD~v~-----v~~~~~~~-------~~~~~~~~~~~Pl~~~~~~~~~-~~~~~~l~---- 216 (243)
T cd00377 154 AGEEGLDEAIERAKAYAEAGADGIF-----VEGLKDPE-------EIRAFAEAPDVPLNVNMTPGGN-LLTVAELA---- 216 (243)
T ss_pred ccCCCHHHHHHHHHHHHHcCCCEEE-----eCCCCCHH-------HHHHHHhcCCCCEEEEecCCCC-CCCHHHHH----
Confidence 1234555667899999999773 22222554 5566666666677777666543 12333444
Q ss_pred HhcCCC
Q psy10250 357 IMLGPD 362 (387)
Q Consensus 357 ~~~Ga~ 362 (387)
++|..
T Consensus 217 -~lG~~ 221 (243)
T cd00377 217 -ELGVR 221 (243)
T ss_pred -HCCCe
Confidence 47873
No 354
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=74.37 E-value=12 Score=34.29 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=41.0
Q ss_pred HHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHcccCccEEEEEec-cCCCCHHHHHHHHHHHHHcCCCEEec
Q psy10250 15 EIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAV-GELKTSENIYYASMTAMFAGSDFIKT 93 (387)
Q Consensus 15 E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt-~~L~~~e~i~~a~~~a~~ag~dfvKT 93 (387)
+++.+.+.|||-|=+ +... +. ..+.++.+.++. .-++++++. +--+..+++. .+.+.|+|||+.
T Consensus 68 ~~~~~~~~Gad~i~v--h~~~---~~-----~~~~~~i~~~~~-~g~~~~~~~~~~~t~~~~~~----~~~~~g~d~v~~ 132 (206)
T TIGR03128 68 EAEQAFAAGADIVTV--LGVA---DD-----ATIKGAVKAAKK-HGKEVQVDLINVKDKVKRAK----ELKELGADYIGV 132 (206)
T ss_pred HHHHHHHcCCCEEEE--eccC---CH-----HHHHHHHHHHHH-cCCEEEEEecCCCChHHHHH----HHHHcCCCEEEE
Confidence 788999999987532 2221 11 233444444543 237999984 3221123333 346679999999
Q ss_pred CCCCC
Q psy10250 94 STGKE 98 (387)
Q Consensus 94 STG~~ 98 (387)
.+||.
T Consensus 133 ~pg~~ 137 (206)
T TIGR03128 133 HTGLD 137 (206)
T ss_pred cCCcC
Confidence 88875
No 355
>PRK06801 hypothetical protein; Provisional
Probab=74.13 E-value=97 Score=30.77 Aligned_cols=151 Identities=19% Similarity=0.207 Sum_probs=86.6
Q ss_pred ccHHHHHHHhhhcCCCCCceEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHH
Q psy10250 184 ARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEK 263 (387)
Q Consensus 184 ~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~ 263 (387)
.+...++..-++ ++++| + +-.=||.. ...+++|++.|++-|-+ +-+.+ .+++-.+.-+++++.
T Consensus 61 ~~~~~~~~~a~~----~~vpV--~-lHlDH~~~-----~e~i~~Ai~~GftSVm~--D~S~l---~~eeNi~~t~~v~~~ 123 (286)
T PRK06801 61 SLVEAVKFEAAR----HDIPV--V-LNLDHGLH-----FEAVVRALRLGFSSVMF--DGSTL---EYEENVRQTREVVKM 123 (286)
T ss_pred HHHHHHHHHHHH----CCCCE--E-EECCCCCC-----HHHHHHHHHhCCcEEEE--cCCCC---CHHHHHHHHHHHHHH
Confidence 355555555543 56664 2 36667774 45588999999988665 33322 456666667777777
Q ss_pred hCCCcceEEEEeeccCCChH--------------HHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHH
Q psy10250 264 CGEKIHMKTILAVGELKTSE--------------NIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKL 329 (387)
Q Consensus 264 ~~~~~~lKvIlEt~~L~t~e--------------~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~ 329 (387)
|+. .-+-|=.|.+.+...+ ....|.+.+.+.|+||+..|-|-.. |.......+-++-++.+++.
T Consensus 124 a~~-~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~H-g~y~~~~~l~~e~l~~i~~~ 201 (286)
T PRK06801 124 CHA-VGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAVAIGNAH-GKYKGEPKLDFARLAAIHQQ 201 (286)
T ss_pred HHH-cCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEeccCCCC-CCCCCCCCCCHHHHHHHHHh
Confidence 754 2223333443332100 1233455566789999999776432 21111112223456666665
Q ss_pred cCCCceEeEecc--CCCHHHHHHHHHHHHHhcCC
Q psy10250 330 SGKKIGLKPAGG--ISTFEDSVRWIYLVLIMLGP 361 (387)
Q Consensus 330 ~~~~~gIKasGG--Irt~~~a~~~i~l~~~~~Ga 361 (387)
++ +.+=+-|| |. .++..+.+ .+|.
T Consensus 202 ~~--~PLVlHGGSgi~-~e~~~~~i-----~~Gi 227 (286)
T PRK06801 202 TG--LPLVLHGGSGIS-DADFRRAI-----ELGI 227 (286)
T ss_pred cC--CCEEEECCCCCC-HHHHHHHH-----HcCC
Confidence 53 56667787 76 56778888 4787
No 356
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=74.03 E-value=12 Score=37.55 Aligned_cols=92 Identities=16% Similarity=0.112 Sum_probs=59.4
Q ss_pred eEEEEeeccCCChHHHHHHHHHHHHcCCCEEEc----------CCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEe
Q psy10250 270 MKTILAVGELKTSENIYCASMTAMFAGSDFIKT----------STGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPA 339 (387)
Q Consensus 270 lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKT----------STGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKas 339 (387)
-.+++-.+-= ++++..+|++.+.++|+|.|-- .-||| ++-+..-..+.+-++.+++.++-.+.+|..
T Consensus 65 ~p~~vQl~g~-~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~G--s~L~~~p~~~~eiv~avr~~v~~pVsvKiR 141 (333)
T PRK11815 65 HPVALQLGGS-DPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFG--ACLMAEPELVADCVKAMKDAVSIPVTVKHR 141 (333)
T ss_pred CcEEEEEeCC-CHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCee--eHHhcCHHHHHHHHHHHHHHcCCceEEEEE
Confidence 3466665544 6788999999999999999942 23332 222233344445556667777778999987
Q ss_pred ccCCC---HHHHHHHHHHHHHhcCCCccC
Q psy10250 340 GGIST---FEDSVRWIYLVLIMLGPDWLN 365 (387)
Q Consensus 340 GGIrt---~~~a~~~i~l~~~~~Ga~w~~ 365 (387)
.|+.. .+++..++..+ ..+|++++.
T Consensus 142 ~g~~~~~t~~~~~~~~~~l-~~aG~d~i~ 169 (333)
T PRK11815 142 IGIDDQDSYEFLCDFVDTV-AEAGCDTFI 169 (333)
T ss_pred eeeCCCcCHHHHHHHHHHH-HHhCCCEEE
Confidence 77754 44555555433 257998874
No 357
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=73.93 E-value=11 Score=35.90 Aligned_cols=83 Identities=17% Similarity=0.090 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHH-----------HHHH
Q psy10250 282 SENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFE-----------DSVR 350 (387)
Q Consensus 282 ~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~-----------~a~~ 350 (387)
++.+..+.+.+.+.|+|.+++|. ..++.+++..+.... -+++||| ++ +...
T Consensus 134 ~~~v~~~a~~a~~~g~dgvv~~~----------------~~~~~ir~~~~~~~~-~v~pGI~-~~g~~~~dq~~~~~~~~ 195 (230)
T PRK00230 134 EEQVLRLAKLAQEAGLDGVVCSA----------------QEAAAIREATGPDFL-LVTPGIR-PAGSDAGDQKRVMTPAQ 195 (230)
T ss_pred HHHHHHHHHHHHHcCCeEEEeCh----------------HHHHHHHhhcCCceE-EEcCCcC-CCCCCcchHHHHhCHHH
Q ss_pred HHHHHHHhcCCCccCCCcceeeccchHHHHHHHHhhC
Q psy10250 351 WIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELEAL 387 (387)
Q Consensus 351 ~i~l~~~~~Ga~w~~~~~~RIGtSs~~~il~~~~~~~ 387 (387)
.+ ..|++.+--|+.-..+++..+-+.+-.+.+
T Consensus 196 ai-----~~Gad~iVvGR~I~~a~dP~~~a~~i~~~i 227 (230)
T PRK00230 196 AI-----AAGSDYIVVGRPITQAADPAAAYEAILAEI 227 (230)
T ss_pred HH-----HcCCCEEEECCcccCCCCHHHHHHHHHHHh
No 358
>PRK12928 lipoyl synthase; Provisional
Probab=73.81 E-value=27 Score=34.65 Aligned_cols=154 Identities=11% Similarity=0.017 Sum_probs=80.7
Q ss_pred CCCCC---CCHHHHHHHHHHHHHcCCCeeeee-cchhHHhcCChhHHHHHHHHHHHHcccCccEEEEEeccCCC------
Q psy10250 2 FPSGQ---YLLETRLHEIELLAKQKVDEVDIV-IQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGELK------ 71 (387)
Q Consensus 2 FP~G~---~~~~~K~~E~~~a~~~GA~EiD~V-in~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~------ 71 (387)
||.|. .+.+.=..+++.+.+.|++||-++ .+.+.+.++..+++.+=++.|.+..+. ..++++-. ..+.
T Consensus 79 ~~~g~~~~~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~-~~I~~ltp-~~~~~~~e~L 156 (290)
T PRK12928 79 VDKGRPMPLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPG-TGIEVLTP-DFWGGQRERL 156 (290)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCC-CEEEEecc-ccccCCHHHH
Confidence 45544 245666678888888999997764 223333344455666666666554322 33444311 1110
Q ss_pred -----------------------------CHHHHHHHHHHHHHcCCCEEecCCCCCCC-CCCCc-------ccccchhcc
Q psy10250 72 -----------------------------TSENIYYASMTAMFAGSDFIKTSTGKEKT-NATIP-------ADLTRQFEA 114 (387)
Q Consensus 72 -----------------------------~~e~i~~a~~~a~~ag~dfvKTSTG~~~~-gat~~-------~~~~~~~~~ 114 (387)
+.++..+..+.+.+.|.+ ++|.||+--| |=|.. .-...|++.
T Consensus 157 ~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~-i~~~s~iIvG~GET~ed~~etl~~Lrel~~d~ 235 (290)
T PRK12928 157 ATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPD-IPTKSGLMLGLGETEDEVIETLRDLRAVGCDR 235 (290)
T ss_pred HHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCC-ceecccEEEeCCCCHHHHHHHHHHHHhcCCCE
Confidence 122333334445555554 3344432111 22222 111122222
Q ss_pred ccchhhhhhHHHHHHhhcccccccCCCCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECC
Q psy10250 115 VDLSRLKNKKSLLLKIIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYP 183 (387)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~~ID~T~L~~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P 183 (387)
+++.| =+-+--.|.-+....++++++.+=+.|. +.||..|---|
T Consensus 236 v~i~~---------Yl~p~~~~~~v~~~~~~~~f~~~~~~~~----------------~~g~~~~~~~p 279 (290)
T PRK12928 236 LTIGQ---------YLRPSLAHLPVQRYWTPEEFEALGQIAR----------------ELGFSHVRSGP 279 (290)
T ss_pred EEEEc---------CCCCCccCCceeeccCHHHHHHHHHHHH----------------HcCCceeEecC
Confidence 22222 1223356777888899999999999998 68998877666
No 359
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=73.61 E-value=84 Score=29.80 Aligned_cols=118 Identities=10% Similarity=0.013 Sum_probs=68.4
Q ss_pred CCCeEEEEECC---ccHHHHHHHhhhcCCCCCceEEEEecCCCCCCCC------------HHHH----HHHHHHHHHCCC
Q psy10250 173 NVHTAAVCVYP---ARVVDVIKVLDRENARDDVKVASVAAGFPSGQYL------------LETR----LHEIELLAKQKV 233 (387)
Q Consensus 173 ~~~~~aVcV~P---~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~------------~e~K----~~Ea~~Ai~~GA 233 (387)
+.||.+|=+.. ......++.|+. .++++++. ++|.|... .+.. ..-++.|.+.||
T Consensus 26 ~~Gf~~VEl~~~~~~~~~~~~~~l~~----~gl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lga 99 (258)
T PRK09997 26 QCGFRGVEFMFPYDYDIEELKQVLAS----NKLEHTLH--NLPAGDWAAGERGIACIPGREEEFRDGVAAAIRYARALGN 99 (258)
T ss_pred HhCCCEEEEcCCCCCCHHHHHHHHHH----cCCcEEEE--cCCCCccccCcCccccCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 56776666432 356677888875 68988665 56665421 1111 122455667899
Q ss_pred CeeeeecCchhhhcC-----ChhHHHHHHHHHHHHhCCCcceEEEEeec--------cCCChHHHHHHHHHHHHcCCCEE
Q psy10250 234 DEVDIVIQRSLVLNN-----QWPELFSEVKQMKEKCGEKIHMKTILAVG--------ELKTSENIYCASMTAMFAGSDFI 300 (387)
Q Consensus 234 dEID~Vin~~~lk~g-----~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~--------~L~t~e~i~~a~~ia~~aGaDfV 300 (387)
.-| ++..|....+ .|+.+.+-+.++.+.+.+ .-+++-+|+- .+.+. ..+-++..+.+.+.|
T Consensus 100 ~~i--~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~-~Gv~l~lE~~n~~~~~~~~~~~~---~~~~~ll~~v~~~~v 173 (258)
T PRK09997 100 KKI--NCLVGKTPAGFSSEQIHATLVENLRYAANMLMK-EDILLLIEPINHFDIPGFHLTGT---RQALKLIDDVGCCNL 173 (258)
T ss_pred CEE--EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-cCCEEEEEeCCCcCCCCCccCCH---HHHHHHHHHhCCCCE
Confidence 975 3344433211 145556666777666654 3589999961 34443 344556677787777
Q ss_pred Ec
Q psy10250 301 KT 302 (387)
Q Consensus 301 KT 302 (387)
+-
T Consensus 174 ~l 175 (258)
T PRK09997 174 KI 175 (258)
T ss_pred EE
Confidence 64
No 360
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=73.47 E-value=26 Score=33.53 Aligned_cols=108 Identities=24% Similarity=0.324 Sum_probs=63.3
Q ss_pred HHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCc
Q psy10250 255 SEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKI 334 (387)
Q Consensus 255 ~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~ 334 (387)
+=++.+++.+++. +++-.+--++ .=.--+++|.++||||+ |-.|-. .-+|.. ..++.-++ .+..+
T Consensus 45 ~aV~~lr~~~pd~---~IvAD~Kt~D---~G~~e~~ma~~aGAd~~-tV~g~A-~~~TI~------~~i~~A~~-~~~~v 109 (217)
T COG0269 45 RAVRALRELFPDK---IIVADLKTAD---AGAIEARMAFEAGADWV-TVLGAA-DDATIK------KAIKVAKE-YGKEV 109 (217)
T ss_pred HHHHHHHHHCCCC---eEEeeeeecc---hhHHHHHHHHHcCCCEE-EEEecC-CHHHHH------HHHHHHHH-cCCeE
Confidence 5577788888761 3333333332 11223688999999999 666632 223333 45544433 34444
Q ss_pred eEeEeccCCCHHHHHHHHHHHHHhcCCCcc----CCCcceeeccchHHHHHH
Q psy10250 335 GLKPAGGISTFEDSVRWIYLVLIMLGPDWL----NKDLFRIGASSLLNNILQ 382 (387)
Q Consensus 335 gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~----~~~~~RIGtSs~~~il~~ 382 (387)
.+=-- |.+|++++.++++ ++|.+.+ ..+...-|.|.+.+++.+
T Consensus 110 ~iDl~-~~~~~~~~~~~l~----~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ 156 (217)
T COG0269 110 QIDLI-GVWDPEQRAKWLK----ELGVDQVILHRGRDAQAAGKSWGEDDLEK 156 (217)
T ss_pred EEEee-cCCCHHHHHHHHH----HhCCCEEEEEecccHhhcCCCccHHHHHH
Confidence 44443 7999999999995 4888754 223333577765555443
No 361
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=73.43 E-value=13 Score=37.95 Aligned_cols=69 Identities=17% Similarity=0.151 Sum_probs=43.7
Q ss_pred HHHHHcCCCEEEcCCCCCC---CCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCC
Q psy10250 290 MTAMFAGSDFIKTSTGKEK---TNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNK 366 (387)
Q Consensus 290 ~ia~~aGaDfVKTSTGf~~---~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~ 366 (387)
..|.+.|+|||.-|.=|.. .+.++- -.+-++.+.+.. ++.|=|-|||. .+++..++ .+|+
T Consensus 254 ~~A~~~GaDYI~lGPvf~T~tKp~~~~~----Gle~l~~~~~~~--~iPv~AiGGI~-~~ni~~l~-----~~Ga----- 316 (347)
T PRK02615 254 AKAIAEGADYIGVGPVFPTPTKPGKAPA----GLEYLKYAAKEA--PIPWFAIGGID-KSNIPEVL-----QAGA----- 316 (347)
T ss_pred HHHHHcCCCEEEECCCcCCCCCCCCCCC----CHHHHHHHHHhC--CCCEEEECCCC-HHHHHHHH-----HcCC-----
Confidence 4456789999986655421 111111 113444444433 47788999995 78888888 5888
Q ss_pred CcceeeccchH
Q psy10250 367 DLFRIGASSLL 377 (387)
Q Consensus 367 ~~~RIGtSs~~ 377 (387)
.+|+.+|++
T Consensus 317 --~gVAvisaI 325 (347)
T PRK02615 317 --KRVAVVRAI 325 (347)
T ss_pred --cEEEEeHHH
Confidence 688887755
No 362
>PRK08444 hypothetical protein; Provisional
Probab=73.34 E-value=37 Score=34.64 Aligned_cols=140 Identities=19% Similarity=0.097 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEE-----------E-----------
Q psy10250 216 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKT-----------I----------- 273 (387)
Q Consensus 216 ~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKv-----------I----------- 273 (387)
.+.+.-+..++++.+.|++|+-+|- |.-..-+++++.+=++.|++..++ ..++. +
T Consensus 80 ls~eeI~~~a~~a~~~G~~ei~iv~--G~~p~~~~e~y~e~ir~Ik~~~p~-i~i~a~s~~Ei~~~a~~~g~~~~e~l~~ 156 (353)
T PRK08444 80 MSHEEILEIVKNSVKRGIKEVHIVS--AHNPNYGYEWYLEIFKKIKEAYPN-LHVKAMTAAEVDFLSRKFGKSYEEVLED 156 (353)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEec--cCCCCCCHHHHHHHHHHHHHHCCC-ceEeeCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4678888899999999999999993 211222678888888888876654 45554 1
Q ss_pred -Eeecc----CC------------------ChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHc
Q psy10250 274 -LAVGE----LK------------------TSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLS 330 (387)
Q Consensus 274 -lEt~~----L~------------------t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~ 330 (387)
.|.+. -. +.++..+..+.|-++|... |||+-.+.|=|+++-..++..+|.+...+
T Consensus 157 LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~--~sg~l~G~gEt~edrv~hl~~Lr~Lq~~t 234 (353)
T PRK08444 157 MLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKMS--NATMLFGHIENREHRIDHMLRLRDLQDKT 234 (353)
T ss_pred HHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCCc--cceeEEecCCCHHHHHHHHHHHHHhcccc
Confidence 11111 00 1133333345556666554 55554445677877666666777665544
Q ss_pred CC------------CceEeEeccCCCHHHHHHHHHHHHHhcCC
Q psy10250 331 GK------------KIGLKPAGGISTFEDSVRWIYLVLIMLGP 361 (387)
Q Consensus 331 ~~------------~~gIKasGGIrt~~~a~~~i~l~~~~~Ga 361 (387)
++ ...++-. .--+..+.+..+.+++-.++.
T Consensus 235 ~gf~~fIp~~f~~~~t~l~~~-~~~~~~e~Lr~iAi~Rl~L~~ 276 (353)
T PRK08444 235 GGFNAFIPLVYQRENNYLKVE-KFPSSQEILKTIAISRILLDN 276 (353)
T ss_pred CCceEEEecccCCCCCcCCCC-CCCCHHHHHHHHHHHHHhcCC
Confidence 32 1111111 125677888888887777764
No 363
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=73.32 E-value=18 Score=33.86 Aligned_cols=69 Identities=17% Similarity=0.250 Sum_probs=45.5
Q ss_pred HHHHHHHcCCCEEEcCC--CC-CCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCcc
Q psy10250 288 ASMTAMFAGSDFIKTST--GK-EKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 364 (387)
Q Consensus 288 a~~ia~~aGaDfVKTST--Gf-~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~ 364 (387)
.++.-.+.|+|.+--.+ |. ...+..+ +.++.+.+.+ .+.|=+.||||+.+|+..++ .+|++
T Consensus 35 ~a~~~~~~g~~~i~v~dld~~~~g~~~~~-------~~i~~i~~~~--~~pv~~~GGI~~~ed~~~~~-----~~Ga~-- 98 (233)
T PRK00748 35 QAKAWEDQGAKWLHLVDLDGAKAGKPVNL-------ELIEAIVKAV--DIPVQVGGGIRSLETVEALL-----DAGVS-- 98 (233)
T ss_pred HHHHHHHcCCCEEEEEeCCccccCCcccH-------HHHHHHHHHC--CCCEEEcCCcCCHHHHHHHH-----HcCCC--
Confidence 34445568999877666 54 2233444 3555555554 35677799999999999999 47874
Q ss_pred CCCcceeeccc
Q psy10250 365 NKDLFRIGASS 375 (387)
Q Consensus 365 ~~~~~RIGtSs 375 (387)
..-+|++.
T Consensus 99 ---~vilg~~~ 106 (233)
T PRK00748 99 ---RVIIGTAA 106 (233)
T ss_pred ---EEEECchH
Confidence 23456653
No 364
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=73.25 E-value=1.4e+02 Score=32.15 Aligned_cols=177 Identities=11% Similarity=0.036 Sum_probs=98.8
Q ss_pred CCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEecCCCCCCCCHHH
Q psy10250 141 GDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLET 220 (387)
Q Consensus 141 ~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~~e~ 220 (387)
+.+|.+|+++.-+-. ..+++.|+....+.+.|+.. .+++.. . .++|.|...|+.
T Consensus 273 ggttleei~~a~~A~---------------------~~ivl~~~~~~~~a~~l~~~---~g~p~~-~-~~~PiGi~~Td~ 326 (515)
T TIGR01286 273 GGTTLEEMKDAPNAE---------------------ATVLLQPYTLRKTKEYIEKT---WKQETP-K-LNIPLGVKGTDE 326 (515)
T ss_pred CCCCHHHHHHhhhCc---------------------EEEEEchhhhHHHHHHHHHH---hCCCcc-c-CCCCccHHHHHH
Confidence 457888887653322 46778888888888888752 466543 3 489999999988
Q ss_pred HHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEE
Q psy10250 221 RLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 300 (387)
Q Consensus 221 K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfV 300 (387)
=+.++.+.... ++ + ..+. .....+.+.|.....-.++ -||+|- . +++...-.++...+.|+.-+
T Consensus 327 fL~~la~~~g~---~i----p-~~i~-~eR~rl~dam~d~~~~l~G---KrvaI~---g-dpd~~~~l~~fL~ElGmepv 390 (515)
T TIGR01286 327 FLMKVSEISGQ---PI----P-AELT-KERGRLVDAMTDSHAWLHG---KRFAIY---G-DPDFVMGLVRFVLELGCEPV 390 (515)
T ss_pred HHHHHHHHHCC---CC----C-HHHH-HHHHHHHHHHHHHHHHhcC---ceEEEE---C-CHHHHHHHHHHHHHCCCEEE
Confidence 88877766543 11 1 1111 1112233333332222333 467763 3 45667777888889999977
Q ss_pred EcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccchHH
Q psy10250 301 KTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLN 378 (387)
Q Consensus 301 KTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~~~ 378 (387)
.-+|+.+.. ..+ +.++.+.+..+...+.++.-| +++.+...++. ...+| .-||.|.+..
T Consensus 391 ~v~~~~~~~--~~~------~~l~~ll~~~~~~~~~~v~~~-~Dl~~l~~~l~----~~~~D------lliG~s~~k~ 449 (515)
T TIGR01286 391 HILCTNGTK--RWK------AEMKALLAASPYGQNATVWIG-KDLWHLRSLVF----TEPVD------FLIGNSYGKY 449 (515)
T ss_pred EEEeCCCCH--HHH------HHHHHHHhcCCCCCccEEEeC-CCHHHHHHHHh----hcCCC------EEEECchHHH
Confidence 777664321 111 233333333222233444443 36666666653 33444 5566665543
No 365
>PRK07360 FO synthase subunit 2; Reviewed
Probab=72.96 E-value=17 Score=37.02 Aligned_cols=77 Identities=17% Similarity=0.088 Sum_probs=55.0
Q ss_pred cCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeE-----------eccCCCHH
Q psy10250 278 ELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKP-----------AGGISTFE 346 (387)
Q Consensus 278 ~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKa-----------sGGIrt~~ 346 (387)
.| +.|+|.+.++.+.+.|+.-+-=..|..+....++. +++.++.+++.. ..+.+++ +.|..+.+
T Consensus 90 ~l-s~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~---~~~~i~~ik~~~-~~i~i~a~s~~ei~~~~~~~G~~~~e 164 (371)
T PRK07360 90 WL-TIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEF---YLEILEAIKEEF-PDIHLHAFSPMEVYFAAREDGLSYEE 164 (371)
T ss_pred eC-CHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHH---HHHHHHHHHHhC-CCcceeeCCHHHHHHHHhhcCCCHHH
Confidence 45 78999999999999999987766776554333443 345556666544 4688887 46888888
Q ss_pred HHHHHHHHHHHhcCCCcc
Q psy10250 347 DSVRWIYLVLIMLGPDWL 364 (387)
Q Consensus 347 ~a~~~i~l~~~~~Ga~w~ 364 (387)
+...|. ++|.+.+
T Consensus 165 ~l~~Lk-----eAGld~~ 177 (371)
T PRK07360 165 VLKALK-----DAGLDSM 177 (371)
T ss_pred HHHHHH-----HcCCCcC
Confidence 888888 5998643
No 366
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=72.92 E-value=20 Score=36.23 Aligned_cols=83 Identities=13% Similarity=0.188 Sum_probs=54.8
Q ss_pred HHHHHHHcCCCeeeeecchhHH----hc---------------CChhHHHHHHHHHHHHcccCccEEEEEeccC-----C
Q psy10250 15 EIELLAKQKVDEVDIVIQRSLV----LN---------------NQWPELFSEVKQMKEKCEEKIHMKTILAVGE-----L 70 (387)
Q Consensus 15 E~~~a~~~GA~EiD~Vin~~~l----k~---------------g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~-----L 70 (387)
-|+.|.+.|.|.||+=..-|.| +| ++...+.+=+++|++.++.+.++|+=|-... +
T Consensus 146 AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~ 225 (343)
T cd04734 146 AARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGL 225 (343)
T ss_pred HHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCC
Confidence 3667888999999986533433 12 1225555666777777765555665443322 3
Q ss_pred CCHHHHHHHHHHHHHcC-CCEEecCCCCC
Q psy10250 71 KTSENIYYASMTAMFAG-SDFIKTSTGKE 98 (387)
Q Consensus 71 ~~~e~i~~a~~~a~~ag-~dfvKTSTG~~ 98 (387)
+.++....++...++| +|||-.|.|..
T Consensus 226 -~~~e~~~~~~~l~~~G~vd~i~vs~g~~ 253 (343)
T cd04734 226 -SPDEALEIAARLAAEGLIDYVNVSAGSY 253 (343)
T ss_pred -CHHHHHHHHHHHHhcCCCCEEEeCCCCC
Confidence 4566677888888898 89999998853
No 367
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=72.45 E-value=11 Score=36.04 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=30.9
Q ss_pred HHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccch
Q psy10250 322 AIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL 376 (387)
Q Consensus 322 ~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~ 376 (387)
.++.+.+. -.+.|=++|||||.+++..++ .+|++ ..-||+...
T Consensus 64 ~i~~i~~~--~~~pv~~gGGIrs~edv~~l~-----~~G~~-----~vivGtaa~ 106 (228)
T PRK04128 64 VVKNIIRE--TGLKVQVGGGLRTYESIKDAY-----EIGVE-----NVIIGTKAF 106 (228)
T ss_pred HHHHHHhh--CCCCEEEcCCCCCHHHHHHHH-----HCCCC-----EEEECchhc
Confidence 44454443 346788999999999999999 47873 345787654
No 368
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=72.44 E-value=83 Score=30.97 Aligned_cols=116 Identities=11% Similarity=0.114 Sum_probs=66.3
Q ss_pred HHHHHHHHCCCCeeeeecCchhhhcCC--hhHHHHHHHHHHHHhCC-Ccc-----------eEEEEeeccCCChHHHHHH
Q psy10250 223 HEIELLAKQKVDEVDIVIQRSLVLNNQ--WPELFSEVKQMKEKCGE-KIH-----------MKTILAVGELKTSENIYCA 288 (387)
Q Consensus 223 ~Ea~~Ai~~GAdEID~Vin~~~lk~g~--~~~v~~Ei~~v~~~~~~-~~~-----------lKvIlEt~~L~t~e~i~~a 288 (387)
..++.+++.||+- +|++-.+++++. .+.+. ++.+..++ ... -+|-+.-..=.+.-.....
T Consensus 95 e~i~~~l~~Ga~r--ViigT~Av~~~~~~p~~v~----~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~ 168 (262)
T PLN02446 95 ENAMSYLDAGASH--VIVTSYVFRDGQIDLERLK----DLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEE 168 (262)
T ss_pred HHHHHHHHcCCCE--EEEchHHHhCCCCCHHHHH----HHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHH
Confidence 6788889999988 677888888543 33333 33333321 111 1233222111111122233
Q ss_pred HHHHHHcCCC-EEEcCCCCCC--CCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHH
Q psy10250 289 SMTAMFAGSD-FIKTSTGKEK--TNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY 353 (387)
Q Consensus 289 ~~ia~~aGaD-fVKTSTGf~~--~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~ 353 (387)
..-..+.|+. ||=|+-.... .|..++ -++.+.+. ..+.|=|||||+++++...+..
T Consensus 169 ~~~~~~~g~~eii~TdI~rDGtl~G~d~e-------l~~~l~~~--~~ipVIASGGv~sleDi~~L~~ 227 (262)
T PLN02446 169 TLEFLAAYCDEFLVHGVDVEGKRLGIDEE-------LVALLGEH--SPIPVTYAGGVRSLDDLERVKV 227 (262)
T ss_pred HHHHHHhCCCEEEEEEEcCCCcccCCCHH-------HHHHHHhh--CCCCEEEECCCCCHHHHHHHHH
Confidence 3444556774 7777765533 345553 34455444 4578899999999999999984
No 369
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=72.43 E-value=56 Score=32.84 Aligned_cols=127 Identities=19% Similarity=0.196 Sum_probs=75.1
Q ss_pred HHHHHHHCCCCeeeeecCch----hhhcCC-------h--------hHHHHHHHHHHHHhCCCcceEEEEeeccCC----
Q psy10250 224 EIELLAKQKVDEVDIVIQRS----LVLNNQ-------W--------PELFSEVKQMKEKCGEKIHMKTILAVGELK---- 280 (387)
Q Consensus 224 Ea~~Ai~~GAdEID~Vin~~----~lk~g~-------~--------~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~---- 280 (387)
-|+.|.+.|.|-|++=---| .++|-. | ..+.+=|++|++.|++..++=+=|-.....
T Consensus 154 AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~ 233 (341)
T PF00724_consen 154 AARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGI 233 (341)
T ss_dssp HHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSH
T ss_pred HHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCCCC
Confidence 47788999999999865443 333332 2 234456688888887644444444443331
Q ss_pred ChHHHHHHHHHHHHcCCCEEEcCCC-CC-------CCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHH
Q psy10250 281 TSENIYCASMTAMFAGSDFIKTSTG-KE-------KTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWI 352 (387)
Q Consensus 281 t~e~i~~a~~ia~~aGaDfVKTSTG-f~-------~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i 352 (387)
+.++....++++.++|.|++--|.| +. ......... ......+.+++.+ ++.|=++|||++.++|.+++
T Consensus 234 ~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~ik~~~--~~pvi~~G~i~~~~~ae~~l 310 (341)
T PF00724_consen 234 TLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPG-YNLDLAEAIKKAV--KIPVIGVGGIRTPEQAEKAL 310 (341)
T ss_dssp HSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTT-TTHHHHHHHHHHH--SSEEEEESSTTHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhhhccccccccccccccccccccccccc-hhhhhhhhhhhhc--CceEEEEeeecchhhhHHHH
Confidence 1355566788888899998753332 10 011111111 1123445556655 35577899999999999999
Q ss_pred H
Q psy10250 353 Y 353 (387)
Q Consensus 353 ~ 353 (387)
.
T Consensus 311 ~ 311 (341)
T PF00724_consen 311 E 311 (341)
T ss_dssp H
T ss_pred h
Confidence 4
No 370
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=72.39 E-value=41 Score=32.37 Aligned_cols=59 Identities=12% Similarity=0.056 Sum_probs=39.5
Q ss_pred HHHHHHHHHHcCC-CEEEcCCCCCC--CCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHH
Q psy10250 285 IYCASMTAMFAGS-DFIKTSTGKEK--TNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWI 352 (387)
Q Consensus 285 i~~a~~ia~~aGa-DfVKTSTGf~~--~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i 352 (387)
.....+...+.|+ .||=|+-.... .|..++ -++.+.+. .++.|=+||||++.++...+-
T Consensus 151 ~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~d~~-------l~~~l~~~--~~~pviasGGv~s~eDl~~l~ 212 (243)
T TIGR01919 151 LEVLERLLDSGGCSRVVVTDSKKDGLSGGPNEL-------LLEVVAAR--TDAIVAASGGSSLLDDLRAIK 212 (243)
T ss_pred HHHHHHHHHhCCCCEEEEEecCCcccCCCcCHH-------HHHHHHhh--CCCCEEEECCcCCHHHHHHHH
Confidence 4445566777887 67888776533 344443 33444443 367889999999999998874
No 371
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=72.27 E-value=19 Score=34.61 Aligned_cols=71 Identities=20% Similarity=0.236 Sum_probs=44.1
Q ss_pred HHHHHHHHHcCCCEEE---cCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 286 YCASMTAMFAGSDFIK---TSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 286 ~~a~~ia~~aGaDfVK---TSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
...++...+.|+|++- ++......+..+ +-++.+++.+ .+.|=+.||||+.+++..++ .+|++
T Consensus 33 ~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~-------~~i~~i~~~~--~~pv~~~GGi~s~~d~~~~~-----~~Ga~ 98 (254)
T TIGR00735 33 VELAQRYDEEGADELVFLDITASSEGRTTMI-------DVVERTAETV--FIPLTVGGGIKSIEDVDKLL-----RAGAD 98 (254)
T ss_pred HHHHHHHHHcCCCEEEEEcCCcccccChhhH-------HHHHHHHHhc--CCCEEEECCCCCHHHHHHHH-----HcCCC
Confidence 3455666779998763 121111122222 3455555554 47788999999999999999 47874
Q ss_pred ccCCCcceeeccc
Q psy10250 363 WLNKDLFRIGASS 375 (387)
Q Consensus 363 w~~~~~~RIGtSs 375 (387)
..-+|++.
T Consensus 99 -----~vivgt~~ 106 (254)
T TIGR00735 99 -----KVSINTAA 106 (254)
T ss_pred -----EEEEChhH
Confidence 23456653
No 372
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=71.98 E-value=1.2e+02 Score=30.70 Aligned_cols=224 Identities=14% Similarity=0.096 Sum_probs=116.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEecCCCCCCCCCCCcccccchhccccchhhhhhHHHHHHhhcc------------cccc
Q psy10250 70 LKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEF------------IDLT 137 (387)
Q Consensus 70 L~~~e~i~~a~~~a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------ID~T 137 (387)
|+.+|.|.+.-+.-++||||-|.|.| |+..--.+ .+..|+-..-.+|+ .-+..+|+.+.- |=-|
T Consensus 49 lT~Pd~I~~IH~aY~eAGADiIeTNT-Fgat~i~l-ady~led~v~~in~--~aa~iAR~aA~~~~~~k~rfVaGsiGPt 124 (311)
T COG0646 49 LTKPDVIEAIHRAYIEAGADIIETNT-FGATTIKL-ADYGLEDKVYEINQ--KAARIARRAADEAGDPKPRFVAGSIGPT 124 (311)
T ss_pred cCCcHHHHHHHHHHHhccCcEEEecC-CCcchhhH-hhhChHHHHHHHHH--HHHHHHHHHHhhcCCCCceEEEEeccCc
Confidence 45678888888999999999999999 76432212 23344111123333 222344444442 2222
Q ss_pred ----cCCC--CCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCcc-HHHHHHHh-------hhcCCCCCce
Q psy10250 138 ----TLSG--DDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPAR-VVDVIKVL-------DRENARDDVK 203 (387)
Q Consensus 138 ----~L~~--~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~-v~~a~~~L-------~~~~~~~~v~ 203 (387)
..+| ..|.+++.....+.+..+ + +-|...+-+--.| +-.++..+ +..+..-++-
T Consensus 125 ~k~~~~~~~~~v~fd~l~~ay~eq~~~L----i--------~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~ 192 (311)
T COG0646 125 NKTLSISPDFAVTFDELVEAYREQVEGL----I--------DGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVM 192 (311)
T ss_pred CCcCCcCCcccccHHHHHHHHHHHHHHH----H--------hCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCCcccEE
Confidence 2444 578999988888887321 1 3477777766553 22222222 2110011233
Q ss_pred EEEEecCCCCCCCCHHHHHHHHHHHHHC-CCCeeeee-cCchhhhcCChhHHHHHHHHHHHHhC------CCcceEEEEe
Q psy10250 204 VASVAAGFPSGQYLLETRLHEIELLAKQ-KVDEVDIV-IQRSLVLNNQWPELFSEVKQMKEKCG------EKIHMKTILA 275 (387)
Q Consensus 204 v~tVvigFP~G~~~~e~K~~Ea~~Ai~~-GAdEID~V-in~~~lk~g~~~~v~~Ei~~v~~~~~------~~~~lKvIlE 275 (387)
+...+ . ..|.+-.-....++-..++. | +|+| +|=+. |- +....-++.+.+..+ +++-+=.+..
T Consensus 193 ~s~Ti-~-~sG~tl~Gq~~~a~~~~l~~~~---~~~vGlNCa~---Gp-~~m~~~l~~ls~~~~~~vs~~PNAGLP~~~g 263 (311)
T COG0646 193 ISGTI-T-DSGRTLSGQTIEAFLNSLEHLG---PDAVGLNCAL---GP-DEMRPHLRELSRIADAFVSVYPNAGLPNAFG 263 (311)
T ss_pred EEEEE-e-cCceecCCCcHHHHHHHhhccC---CcEEeecccc---CH-HHHHHHHHHHHhccCceEEEeCCCCCCcccC
Confidence 33332 2 26666666566666666654 5 5555 66432 32 444444444443322 2222222222
Q ss_pred e--ccCCChHHHHHHH-HHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHH
Q psy10250 276 V--GELKTSENIYCAS-MTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAI 323 (387)
Q Consensus 276 t--~~L~t~e~i~~a~-~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v 323 (387)
. -|=.++++..... ..+.+.|+.-|==+- |+||+|++.|.++|
T Consensus 264 ~~~~Y~~~p~~~a~~~~~f~~~g~vnIvGGCC-----GTTPeHIraia~~v 309 (311)
T COG0646 264 ERAVYDLTPEYMAEALAEFAEEGGVNIVGGCC-----GTTPEHIRAIAEAV 309 (311)
T ss_pred CccccCCCHHHHHHHHHHHHHhCCceeecccc-----CCCHHHHHHHHHHh
Confidence 2 1333566666544 467777787774333 58999877776554
No 373
>PRK15452 putative protease; Provisional
Probab=71.90 E-value=56 Score=34.45 Aligned_cols=122 Identities=12% Similarity=0.092 Sum_probs=78.1
Q ss_pred HHHHHHHHHCCCCeeeeecCchhhh--cCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHH---HHHHHcC
Q psy10250 222 LHEIELLAKQKVDEVDIVIQRSLVL--NNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCAS---MTAMFAG 296 (387)
Q Consensus 222 ~~Ea~~Ai~~GAdEID~Vin~~~lk--~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~---~ia~~aG 296 (387)
....+.|++.|||.|=+-...=.+. .++|.. +|+++.++.|+. .-.||.+-+..+..++++...- .-..+.|
T Consensus 13 ~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~--edl~eav~~ah~-~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~g 89 (443)
T PRK15452 13 LKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNH--ENLALGINEAHA-LGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMK 89 (443)
T ss_pred HHHHHHHHHCCCCEEEECCCccchhhhccCCCH--HHHHHHHHHHHH-cCCEEEEEecCcCCHHHHHHHHHHHHHHHhCC
Confidence 3567899999999998855432222 245553 788888888875 4478888877776666665544 3345788
Q ss_pred CCEEE-cCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEec--cCCCHHHHHHHHHHHHHhcCCCccCCCcceeec
Q psy10250 297 SDFIK-TSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAG--GISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGA 373 (387)
Q Consensus 297 aDfVK-TSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasG--GIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGt 373 (387)
+|-|= .+-| .++.+++.. ..+.|-+|- .|.+...+..|. ++|+ .|+=.
T Consensus 90 vDgvIV~d~G----------------~l~~~ke~~-p~l~ih~stqlni~N~~a~~f~~-----~lG~-------~rvvL 140 (443)
T PRK15452 90 PDALIMSDPG----------------LIMMVREHF-PEMPIHLSVQANAVNWATVKFWQ-----QMGL-------TRVIL 140 (443)
T ss_pred CCEEEEcCHH----------------HHHHHHHhC-CCCeEEEEecccCCCHHHHHHHH-----HCCC-------cEEEE
Confidence 88443 2222 234444443 355666655 467777777776 5888 57766
Q ss_pred cc
Q psy10250 374 SS 375 (387)
Q Consensus 374 Ss 375 (387)
|.
T Consensus 141 Sr 142 (443)
T PRK15452 141 SR 142 (443)
T ss_pred CC
Confidence 63
No 374
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=71.80 E-value=27 Score=33.90 Aligned_cols=191 Identities=15% Similarity=0.140 Sum_probs=102.0
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCc-cHHHHHHHhhhcCCCCCceEEEEecCCCCCCCC
Q psy10250 139 LSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPA-RVVDVIKVLDRENARDDVKVASVAAGFPSGQYL 217 (387)
Q Consensus 139 L~~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~-~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~ 217 (387)
+.|..+...++.+++-+-. ..|-+ ++++.+..++|. .++.-.++.++ .+|.+++= |-.+=...
T Consensus 5 ~dkgl~~~~~~d~Le~~g~-----yID~l-----Kfg~Gt~~l~~~~~l~eki~la~~----~~V~v~~G--Gtl~E~~~ 68 (237)
T TIGR03849 5 LDKGLPPKFVEDYLKVCGD-----YITFV-----KFGWGTSALIDRDIVKEKIEMYKD----YGIKVYPG--GTLFEIAH 68 (237)
T ss_pred ecCCCCHHHHHHHHHHhhh-----heeeE-----EecCceEeeccHHHHHHHHHHHHH----cCCeEeCC--ccHHHHHH
Confidence 3445566666666665541 11222 788899999994 56655555553 47776332 21100111
Q ss_pred HHHHHHH-HHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCC-------ChHHHHHHH
Q psy10250 218 LETRLHE-IELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELK-------TSENIYCAS 289 (387)
Q Consensus 218 ~e~K~~E-a~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~-------t~e~i~~a~ 289 (387)
...++.+ .++|.+.|-+-|++- +|-.+--.++..++++.++. .-+||+-|.+.=. +.++..+-.
T Consensus 69 ~q~~~~~Yl~~~k~lGf~~IEiS-------~G~~~i~~~~~~rlI~~~~~-~g~~v~~EvG~K~~~~~~~~~~~~~i~~~ 140 (237)
T TIGR03849 69 SKGKFDEYLNECDELGFEAVEIS-------DGSMEISLEERCNLIERAKD-NGFMVLSEVGKKSPEKDSELTPDDRIKLI 140 (237)
T ss_pred HhhhHHHHHHHHHHcCCCEEEEc-------CCccCCCHHHHHHHHHHHHh-CCCeEeccccccCCcccccCCHHHHHHHH
Confidence 1122222 347778899988875 23333334455455554443 3578888875321 345666667
Q ss_pred HHHHHcCCCEEEcCC---CCCCCCCChhhhHhHHHHHHHHHHHcC-CCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 290 MTAMFAGSDFIKTST---GKEKTNATIPAGIIMCSAIKHFHKLSG-KKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 290 ~ia~~aGaDfVKTST---Gf~~~gat~~~~~~m~~~v~~~~~~~~-~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
+-+.+|||++|=.=. |.+ .|-+-+...+.-+.|..+.+..+ .++-+-|+ +.+|-..|+. ..|++
T Consensus 141 ~~~LeAGA~~ViiEarEsg~~-~Gi~~~~g~~r~d~v~~i~~~l~~eklifEAp----~k~~q~~~I~----~~G~~ 208 (237)
T TIGR03849 141 NKDLEAGADYVIIEGRESGKN-IGLFDEKGNVKEDELDVLAENVDINKVIFEAP----QKNQQVEFIL----KFGPD 208 (237)
T ss_pred HHHHHCCCcEEEEeehhcCCC-cceeCCCCCCchHHHHHHHhhCChhcEEEECC----CHHHHHHHHH----HhCCC
Confidence 788999999997632 221 01111111111123333333333 56767776 5777777775 57764
No 375
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=71.63 E-value=36 Score=34.14 Aligned_cols=82 Identities=15% Similarity=0.101 Sum_probs=55.2
Q ss_pred HHHHHHHHHcCCCeeeeecc----------hhHHhcCChhHHHHHHHHHHHHcccCccEEEEEeccCCCCHHHHHHHHHH
Q psy10250 13 LHEIELLAKQKVDEVDIVIQ----------RSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGELKTSENIYYASMT 82 (387)
Q Consensus 13 ~~E~~~a~~~GA~EiD~Vin----------~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~~~e~i~~a~~~ 82 (387)
+.-++.+.+.|+|.||+=+- +|..+-.+.+.+.+-+++++++.+..+.+|+=+-.....+.+.....++.
T Consensus 70 ~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~ 149 (318)
T TIGR00742 70 AKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEI 149 (318)
T ss_pred HHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHH
Confidence 33445555679999996322 35555567888999999999877545677876532212123556678888
Q ss_pred HHHcCCCEEecC
Q psy10250 83 AMFAGSDFIKTS 94 (387)
Q Consensus 83 a~~ag~dfvKTS 94 (387)
+.++|+|+|--.
T Consensus 150 l~~~G~~~itvH 161 (318)
T TIGR00742 150 VSGKGCQNFIVH 161 (318)
T ss_pred HHHcCCCEEEEe
Confidence 899999997433
No 376
>PRK06256 biotin synthase; Validated
Probab=71.48 E-value=23 Score=35.20 Aligned_cols=12 Identities=17% Similarity=0.036 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhc
Q psy10250 145 EAVVETLTLKAI 156 (387)
Q Consensus 145 ~~~i~~l~~~A~ 156 (387)
.+++..+++.|.
T Consensus 33 ~~~~~~L~~~A~ 44 (336)
T PRK06256 33 DDDLLELLAAAY 44 (336)
T ss_pred hHHHHHHHHHHH
Confidence 344555555554
No 377
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=71.42 E-value=75 Score=30.76 Aligned_cols=185 Identities=17% Similarity=0.110 Sum_probs=108.7
Q ss_pred eeeee-cchhHHhcCChhHHHHHHHHHHHHcccCccEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEecCCCCCCCCCCC
Q psy10250 26 EVDIV-IQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATI 104 (387)
Q Consensus 26 EiD~V-in~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~~~e~i~~a~~~a~~ag~dfvKTSTG~~~~gat~ 104 (387)
++|++ +++..+..+..+ +.+|+++. . . +||+-.=+-+=+.....+++.+.+.|+|++- ..+|.+..
T Consensus 36 ~~~~~Kvg~~l~~~~g~~-~~~el~~~---~----~-~VflDlK~~DIpnT~~~~~~~~~~~g~d~vt-vH~~~G~~--- 102 (240)
T COG0284 36 TVDFVKVGKPLVAFFGAD-ILEELKAR---G----K-KVFLDLKLADIPNTVALAAKAAADLGADAVT-VHAFGGFD--- 102 (240)
T ss_pred cccEEEEchHHHHhccHH-HHHHHHHh---C----C-ceEEeeecccchHHHHHHHHHhhhcCCcEEE-EeCcCCHH---
Confidence 66644 555555554444 33333332 1 1 7887765554345667888888999999974 44443211
Q ss_pred cccccchhccccchhhhhhHHHHHHhh-cccccccCCC------------CCCHHHHHHHHHHhcCCCcHHHHHHHhhhc
Q psy10250 105 PADLTRQFEAVDLSRLKNKKSLLLKII-EFIDLTTLSG------------DDTEAVVETLTLKAIQPLSEELKEKVLHQQ 171 (387)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~ID~T~L~~------------~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~ 171 (387)
.| +..+..+...- ..|=.|.|.. +...+.|.++.+.+.
T Consensus 103 ----~~----------~~~~e~~~~~~~~vl~vT~lts~~~~~~~~~~~~~~~~~~v~~~a~~~~--------------- 153 (240)
T COG0284 103 ----ML----------RAAKEALEAGGPFVLAVTSLTSMGELQLAELGINSSLEEQVLRLAKLAG--------------- 153 (240)
T ss_pred ----HH----------HHHHHHHhhcCceEEEEEeCCCchhhhhhhccccchHHHHHHHHHHHhc---------------
Confidence 11 00011111100 1222333322 233555666666665
Q ss_pred cCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChh
Q psy10250 172 ANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWP 251 (387)
Q Consensus 172 ~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~ 251 (387)
.+|.-++.++|..+...++... .+..+-|--|+= .++....-.+....+|+..|+|- +|+-++-+.++|..
T Consensus 154 -~~G~dgvv~~~~e~~~ir~~~g-----~~~~iltPGIg~-~~~~gdQ~~~~t~~~A~~~Gad~--ivVGR~I~~a~~p~ 224 (240)
T COG0284 154 -EAGLDGVVCSAEEVAAIREILG-----PDFLILTPGIGA-GSQGGDQGRVMTPGEAVRAGADY--IVVGRPITQAGDPV 224 (240)
T ss_pred -cCCceEEEcCHHHHHHHHHhcC-----CCcEEECCCcCc-CcCCCCcccccCHHHHHhcCCCE--EEEChhhhcCCChH
Confidence 6799999999999999998874 345555543444 33333444455677888999998 57788888899988
Q ss_pred HHHHHHHHHH
Q psy10250 252 ELFSEVKQMK 261 (387)
Q Consensus 252 ~v~~Ei~~v~ 261 (387)
...+++.+-.
T Consensus 225 ~a~~~i~~~~ 234 (240)
T COG0284 225 AAARAIAREI 234 (240)
T ss_pred HHHHHHHHHH
Confidence 8777665543
No 378
>PRK08508 biotin synthase; Provisional
Probab=71.32 E-value=1.1e+02 Score=29.99 Aligned_cols=166 Identities=13% Similarity=0.124 Sum_probs=94.1
Q ss_pred CCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEE-------CCccHHHHH---HHhhhcCCCCCceEEEEecCCC
Q psy10250 143 DTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCV-------YPARVVDVI---KVLDRENARDDVKVASVAAGFP 212 (387)
Q Consensus 143 ~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV-------~P~~v~~a~---~~L~~~~~~~~v~v~tVvigFP 212 (387)
.++++|.+.++++. ++|+..+|+ +...+++.. +.++.. ..++.+++. .|+.
T Consensus 40 ~s~eeI~~~a~~a~----------------~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~--~p~l~i~~s-~G~~ 100 (279)
T PRK08508 40 KDIEQIVQEAKMAK----------------ANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKE--VPGLHLIAC-NGTA 100 (279)
T ss_pred CCHHHHHHHHHHHH----------------HCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhh--CCCcEEEec-CCCC
Confidence 58899999999987 567788876 222333333 344431 135565544 2444
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCeeeeecCch-----hhh-cCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHH
Q psy10250 213 SGQYLLETRLHEIELLAKQKVDEVDIVIQRS-----LVL-NNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIY 286 (387)
Q Consensus 213 ~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~-----~lk-~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~ 286 (387)
+ ..+.+...+.|++-+=.-+..+ .+. ..+|+...+-++..+++ +-+...-+|+=. =.++|++.
T Consensus 101 ----~----~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~-Gi~v~sg~I~Gl--GEt~ed~~ 169 (279)
T PRK08508 101 ----S----VEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEA-GLGLCSGGIFGL--GESWEDRI 169 (279)
T ss_pred ----C----HHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHc-CCeecceeEEec--CCCHHHHH
Confidence 3 3455566677887765432222 233 35677777777766553 311333446554 34578888
Q ss_pred HHHHHHHHcCCCEEE-------cCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccC
Q psy10250 287 CASMTAMFAGSDFIK-------TSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGI 342 (387)
Q Consensus 287 ~a~~ia~~aGaDfVK-------TSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGI 342 (387)
.......+.|.|.|= +.|.+.....+++.. +..+..+|-.. +..-|..+||=
T Consensus 170 ~~l~~lr~L~~~svpl~~~~p~~~t~~~~~~~~~~~~---lr~iAv~Rl~l-p~~~i~~~~gr 228 (279)
T PRK08508 170 SFLKSLASLSPHSTPINFFIPNPALPLKAPTLSADEA---LEIVRLAKEAL-PNARLMVAGGR 228 (279)
T ss_pred HHHHHHHcCCCCEEeeCCcCCCCCCCCCCCCCCHHHH---HHHHHHHHHHC-CCceeeecCCh
Confidence 888888899998541 112222122344333 33344444344 57789999996
No 379
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=71.30 E-value=49 Score=32.32 Aligned_cols=18 Identities=6% Similarity=0.071 Sum_probs=9.1
Q ss_pred HHHHHHHCCCCeeeeecC
Q psy10250 224 EIELLAKQKVDEVDIVIQ 241 (387)
Q Consensus 224 Ea~~Ai~~GAdEID~Vin 241 (387)
.+..|.+.|||-|.++-|
T Consensus 13 ~a~~A~~~GAdRiELc~~ 30 (248)
T PRK11572 13 CALTAQQAGADRIELCAA 30 (248)
T ss_pred HHHHHHHcCCCEEEEccC
Confidence 344455555555555544
No 380
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=71.14 E-value=1.2e+02 Score=30.57 Aligned_cols=161 Identities=16% Similarity=0.179 Sum_probs=102.2
Q ss_pred HHhhhcCCCCCceEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcce
Q psy10250 191 KVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHM 270 (387)
Q Consensus 191 ~~L~~~~~~~~v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~l 270 (387)
++|.+. ...+++-+. ++|+ ..+.+.-..+++++++.|.+-+=+=+ + .+.+.-.+-++++++++++ -+
T Consensus 117 ~LLGg~--~~~v~~y~s-~~~~--~~~~e~~~~~a~~~~~~Gf~~~Kikv--g----~~~~~d~~~v~~vRe~~G~--~~ 183 (352)
T cd03328 117 RLLGRA--HDSVPVYGS-GGFT--SYDDDRLREQLSGWVAQGIPRVKMKI--G----RDPRRDPDRVAAARRAIGP--DA 183 (352)
T ss_pred HHhcCC--CCCeEEEEe-cCCC--CCCHHHHHHHHHHHHHCCCCEEEeec--C----CCHHHHHHHHHHHHHHcCC--CC
Confidence 455432 235665544 3553 23556677889999999988766532 2 2344445567788888875 47
Q ss_pred EEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEecc--CCCHHHH
Q psy10250 271 KTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGG--ISTFEDS 348 (387)
Q Consensus 271 KvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGG--Irt~~~a 348 (387)
++++....-=+.++-.+.++...+.|..|+--..- +++. +..+.+++..+ ++|-.++| +.+..++
T Consensus 184 ~l~vDaN~~~~~~~A~~~~~~l~~~~~~~~EeP~~-------~~d~----~~~~~l~~~~~--~~iPIa~gE~~~~~~~~ 250 (352)
T cd03328 184 ELFVDANGAYSRKQALALARAFADEGVTWFEEPVS-------SDDL----AGLRLVRERGP--AGMDIAAGEYAYTLAYF 250 (352)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCcchhhCCCC-------hhhH----HHHHHHHhhCC--CCCCEEecccccCHHHH
Confidence 88898766336677777888888889998876552 2111 23333433311 44555665 5689999
Q ss_pred HHHHHHHHHhcCCCccCCCcceee-ccchHHHHH
Q psy10250 349 VRWIYLVLIMLGPDWLNKDLFRIG-ASSLLNNIL 381 (387)
Q Consensus 349 ~~~i~l~~~~~Ga~w~~~~~~RIG-tSs~~~il~ 381 (387)
..++. .-.+++++++..++| -+...++..
T Consensus 251 ~~li~----~~a~div~~d~~~~GGit~~~~ia~ 280 (352)
T cd03328 251 RRLLE----AHAVDVLQADVTRCGGVTGFLQAAA 280 (352)
T ss_pred HHHHH----cCCCCEEecCccccCCHHHHHHHHH
Confidence 99995 234788899999996 455555543
No 381
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=71.02 E-value=57 Score=31.01 Aligned_cols=119 Identities=12% Similarity=0.162 Sum_probs=65.7
Q ss_pred CCCeEEEEECC------------ccHHHHHHHhhhcCCCCCceEEEEe---cCCCCCC-CCHHHH----H----HHHHHH
Q psy10250 173 NVHTAAVCVYP------------ARVVDVIKVLDRENARDDVKVASVA---AGFPSGQ-YLLETR----L----HEIELL 228 (387)
Q Consensus 173 ~~~~~aVcV~P------------~~v~~a~~~L~~~~~~~~v~v~tVv---igFP~G~-~~~e~K----~----~Ea~~A 228 (387)
++||.+|-+.+ ..++..++.++. .++++.+.. .+||.+. .+.+.. + .-++.|
T Consensus 24 ~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~----~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a 99 (275)
T PRK09856 24 ELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQT----YQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMA 99 (275)
T ss_pred HcCCCEEEEccCCccccccccCchHHHHHHHHHHH----cCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHHHHH
Confidence 67888888732 135667777765 688886651 1344432 122211 1 224677
Q ss_pred HHCCCCeeeeecCchhh-----hcCChhHHHHHHHHHHHHhCCCcceEEEEeec------cCCChHHHHHHHHHHHHcCC
Q psy10250 229 AKQKVDEVDIVIQRSLV-----LNNQWPELFSEVKQMKEKCGEKIHMKTILAVG------ELKTSENIYCASMTAMFAGS 297 (387)
Q Consensus 229 i~~GAdEID~Vin~~~l-----k~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~------~L~t~e~i~~a~~ia~~aGa 297 (387)
...||+-| |+..+.. .+..|+.+.+=++.+.+.+.. .-+++.+|+- .+.+.++. .++..+.+-
T Consensus 100 ~~lGa~~i--~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~-~gv~l~iE~~~~~~~~~~~t~~~~---~~l~~~~~~ 173 (275)
T PRK09856 100 KEMNAGYT--LISAAHAGYLTPPNVIWGRLAENLSELCEYAEN-IGMDLILEPLTPYESNVVCNANDV---LHALALVPS 173 (275)
T ss_pred HHhCCCEE--EEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-cCCEEEEecCCCCcccccCCHHHH---HHHHHHcCC
Confidence 88899986 4332211 111345555556666666654 4589999982 24454444 444555565
Q ss_pred CEEE
Q psy10250 298 DFIK 301 (387)
Q Consensus 298 DfVK 301 (387)
+.++
T Consensus 174 ~~v~ 177 (275)
T PRK09856 174 PRLF 177 (275)
T ss_pred Ccce
Confidence 4444
No 382
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=70.83 E-value=42 Score=31.89 Aligned_cols=125 Identities=15% Similarity=0.122 Sum_probs=65.4
Q ss_pred HHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEE---
Q psy10250 224 EIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI--- 300 (387)
Q Consensus 224 Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfV--- 300 (387)
.++.+.+.|||-|=+-.- .++ ..+.+-+..+++. + .|+-+...--++.+.+ ..+.-....|+|
T Consensus 80 ~i~~~~~~Gad~itvH~e-----a~~-~~~~~~l~~ik~~-G----~~~gval~p~t~~e~l---~~~l~~~~vD~Vl~m 145 (228)
T PTZ00170 80 WVDDFAKAGASQFTFHIE-----ATE-DDPKAVARKIREA-G----MKVGVAIKPKTPVEVL---FPLIDTDLVDMVLVM 145 (228)
T ss_pred HHHHHHHcCCCEEEEecc-----CCc-hHHHHHHHHHHHC-C----CeEEEEECCCCCHHHH---HHHHccchhhhHHhh
Confidence 457788889998755322 121 1144444554431 1 2333332222133333 233222345655
Q ss_pred EcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeec
Q psy10250 301 KTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGA 373 (387)
Q Consensus 301 KTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGt 373 (387)
-.-.||......+ -+++.++.+++..+ .+.|=+.|||+. ++...+. .+|+|++--|..-++.
T Consensus 146 ~v~pG~~gq~~~~----~~~~ki~~~~~~~~-~~~I~VdGGI~~-~ti~~~~-----~aGad~iVvGsaI~~a 207 (228)
T PTZ00170 146 TVEPGFGGQSFMH----DMMPKVRELRKRYP-HLNIQVDGGINL-ETIDIAA-----DAGANVIVAGSSIFKA 207 (228)
T ss_pred hcccCCCCcEecH----HHHHHHHHHHHhcc-cCeEEECCCCCH-HHHHHHH-----HcCCCEEEEchHHhCC
Confidence 4456765432222 13356677776654 477899999986 4666777 5899865444443343
No 383
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=70.79 E-value=1.2e+02 Score=30.47 Aligned_cols=141 Identities=12% Similarity=0.044 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcC
Q psy10250 217 LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAG 296 (387)
Q Consensus 217 ~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aG 296 (387)
..+.-+.+++.+++.|.+-+=+-+. ..+.+.-.+-++++++.+++ -+++++....--+.++-.+.++...+.+
T Consensus 141 ~~~~~~~~a~~~~~~Gf~~~KiKvg-----~~~~~~d~~~v~air~~~g~--~~~l~vDaN~~~~~~~A~~~~~~l~~~~ 213 (355)
T cd03321 141 GAKLATERAVTAAEEGFHAVKTKIG-----YPTADEDLAVVRSIRQAVGD--GVGLMVDYNQSLTVPEAIERGQALDQEG 213 (355)
T ss_pred hHHHHHHHHHHHHHhhhHHHhhhcC-----CCChHhHHHHHHHHHHhhCC--CCEEEEeCCCCcCHHHHHHHHHHHHcCC
Confidence 3555677888888888766544321 11334445568888888875 4788888766336677777777778889
Q ss_pred CCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceee-ccc
Q psy10250 297 SDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIG-ASS 375 (387)
Q Consensus 297 aDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIG-tSs 375 (387)
.+||--+.- +++. +..+.+++.++ +.|-+--.+.++.+...++. .-+.+.++++..|+| -+.
T Consensus 214 i~~iEeP~~-------~~d~----~~~~~l~~~~~--ipia~~E~~~~~~~~~~~i~----~~~~d~i~~~~~~~GGit~ 276 (355)
T cd03321 214 LTWIEEPTL-------QHDY----EGHARIASALR--TPVQMGENWLGPEEMFKALS----AGACDLVMPDLMKIGGVTG 276 (355)
T ss_pred CCEEECCCC-------CcCH----HHHHHHHHhcC--CCEEEcCCCcCHHHHHHHHH----hCCCCeEecCHhhhCCHHH
Confidence 999997662 1111 23344444332 44433234689999999985 346788899999996 455
Q ss_pred hHHHHH
Q psy10250 376 LLNNIL 381 (387)
Q Consensus 376 ~~~il~ 381 (387)
.+++..
T Consensus 277 ~~~ia~ 282 (355)
T cd03321 277 WLRASA 282 (355)
T ss_pred HHHHHH
Confidence 555543
No 384
>PRK07534 methionine synthase I; Validated
Probab=70.74 E-value=1.3e+02 Score=30.59 Aligned_cols=28 Identities=29% Similarity=0.182 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEecCCCCC
Q psy10250 70 LKTSENIYYASMTAMFAGSDFIKTSTGKE 98 (387)
Q Consensus 70 L~~~e~i~~a~~~a~~ag~dfvKTSTG~~ 98 (387)
+..++.++...+--++||+|+|.|+| |+
T Consensus 41 i~~Pe~V~~vH~~Yl~AGAdiI~TnT-y~ 68 (336)
T PRK07534 41 EDHPDNITALHQGFVDAGSDIILTNS-FG 68 (336)
T ss_pred ccCHHHHHHHHHHHHHhcCCEEEecC-cc
Confidence 45678888888888999999999999 64
No 385
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=70.68 E-value=44 Score=31.35 Aligned_cols=118 Identities=18% Similarity=0.319 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCC
Q psy10250 219 ETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSD 298 (387)
Q Consensus 219 e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaD 298 (387)
+.=..-++.+++-|.+-|++.+|-. ++ .+-|+.+++..++ +++=.+-..|.|+. +.|+++||+
T Consensus 20 ~~a~~~~~al~~gGi~~iEiT~~t~-----~a---~~~I~~l~~~~p~-----~~vGAGTV~~~e~a----~~a~~aGA~ 82 (196)
T PF01081_consen 20 EDAVPIAEALIEGGIRAIEITLRTP-----NA---LEAIEALRKEFPD-----LLVGAGTVLTAEQA----EAAIAAGAQ 82 (196)
T ss_dssp GGHHHHHHHHHHTT--EEEEETTST-----TH---HHHHHHHHHHHTT-----SEEEEES--SHHHH----HHHHHHT-S
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCc-----cH---HHHHHHHHHHCCC-----CeeEEEeccCHHHH----HHHHHcCCC
Confidence 3335556667778899888888753 22 2334455555543 33445544454433 556777777
Q ss_pred EEEcCCCCCC---------------CCCChhhhHhH------------------HHHHHHHHHHcCCCceEeEeccCCCH
Q psy10250 299 FIKTSTGKEK---------------TNATIPAGIIM------------------CSAIKHFHKLSGKKIGLKPAGGISTF 345 (387)
Q Consensus 299 fVKTSTGf~~---------------~gat~~~~~~m------------------~~~v~~~~~~~~~~~gIKasGGIrt~ 345 (387)
|+-|+ ||.+ +-.|+..+... ..-++.++.-. +.+.+-++|||..
T Consensus 83 FivSP-~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~~~G~~~vK~FPA~~~GG~~~ik~l~~p~-p~~~~~ptGGV~~- 159 (196)
T PF01081_consen 83 FIVSP-GFDPEVIEYAREYGIPYIPGVMTPTEIMQALEAGADIVKLFPAGALGGPSYIKALRGPF-PDLPFMPTGGVNP- 159 (196)
T ss_dssp EEEES-S--HHHHHHHHHHTSEEEEEESSHHHHHHHHHTT-SEEEETTTTTTTHHHHHHHHHTTT-TT-EEEEBSS--T-
T ss_pred EEECC-CCCHHHHHHHHHcCCcccCCcCCHHHHHHHHHCCCCEEEEecchhcCcHHHHHHHhccC-CCCeEEEcCCCCH-
Confidence 77544 5532 23444432210 01222332222 3688899999986
Q ss_pred HHHHHHHHHHHHhcCC
Q psy10250 346 EDSVRWIYLVLIMLGP 361 (387)
Q Consensus 346 ~~a~~~i~l~~~~~Ga 361 (387)
+++..|+ .+|+
T Consensus 160 ~N~~~~l-----~ag~ 170 (196)
T PF01081_consen 160 DNLAEYL-----KAGA 170 (196)
T ss_dssp TTHHHHH-----TSTT
T ss_pred HHHHHHH-----hCCC
Confidence 7888888 5887
No 386
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=70.54 E-value=94 Score=32.33 Aligned_cols=194 Identities=13% Similarity=0.073 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEecCCCCCCCCCCCcccccchhccccchhhhhhHHHHHHhhcccccc-------cCCCC
Q psy10250 70 LKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEFIDLT-------TLSGD 142 (387)
Q Consensus 70 L~~~e~i~~a~~~a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ID~T-------~L~~~ 142 (387)
| +.++..+.|.-....|+|||| +|..+ -+.++++.++......+.++....- ..|-+
T Consensus 137 l-sp~~~a~~~y~~~~GGvD~IK-------------DDE~l--~~q~~~p~~eRv~a~~~a~~~a~~eTG~~~~ya~NiT 200 (391)
T cd08209 137 L-DLDDLAEQLREQALGGVDLIK-------------DDEIL--FDNPLAPALERIRACRPVLQEVYEQTGRRTLYAVNLT 200 (391)
T ss_pred C-CHHHHHHHHHHHHhCCCCccc-------------ccccC--CCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcC
Q ss_pred CCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccH-HHHHHHhhhcCCCCCceEEEEecCCCCCCCCHHHH
Q psy10250 143 DTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARV-VDVIKVLDRENARDDVKVASVAAGFPSGQYLLETR 221 (387)
Q Consensus 143 ~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v-~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~~e~K 221 (387)
...+++.+-.+.++ ++|..++.|+|..+ --+-+.|.. ..++.+.-- +.|.+.......
T Consensus 201 ~~~~em~~ra~~~~----------------~~G~~~~mv~~~~~G~~~l~~l~~---~~~~~lpIh--aHra~~ga~~~~ 259 (391)
T cd08209 201 GPVFTLKEKARRLV----------------EAGANALLFNVFAYGLDVLEALAS---DPEINVPIF--AHPAFAGALYGS 259 (391)
T ss_pred CCHHHHHHHHHHHH----------------HhCCCEEEEeccccchHHHHHHHh---cCcCCcEEE--ecCCcccccccC
Q ss_pred --------HHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHH
Q psy10250 222 --------LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAM 293 (387)
Q Consensus 222 --------~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~ 293 (387)
+.-.+..-=.|||-+ .+.+.+ |.+..-.+|..++.+.|..+
T Consensus 260 ~~~Gis~~~~l~kl~RLaGaD~~-~~~~~~----Gk~~~~~~~~~~~~~~~~~~-------------------------- 308 (391)
T cd08209 260 PDYGIAASVLLGTLMRLAGADAV-LFPSPY----GSVALSKEEALAIAEALRRG-------------------------- 308 (391)
T ss_pred CCCCCcHHHHHHHHHHHcCCCcc-ccCCcc----CCcCCCHHHHHHHHHHHhCc--------------------------
Q ss_pred HcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccC
Q psy10250 294 FAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGI 342 (387)
Q Consensus 294 ~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGI 342 (387)
+++|.+.==.++|.++. .+..+.+..|..+-+=+=|||
T Consensus 309 ----~~~k~~~Pv~sgG~~~g-------~vp~~~~~~G~Dvi~~~GGGi 346 (391)
T cd08209 309 ----GAFKGVFPVPSAGIHPG-------LVPQLLRDFGTDVILNAGGGI 346 (391)
T ss_pred ----CCCCCceEecCCCCChh-------HHHHHHHHhCCceEEecCcce
No 387
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=70.10 E-value=1e+02 Score=29.44 Aligned_cols=181 Identities=12% Similarity=0.099 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHcccCccEEEEEeccCCCCHHHHHHHHHHHHHcCCC
Q psy10250 10 ETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGELKTSENIYYASMTAMFAGSD 89 (387)
Q Consensus 10 ~~K~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~~~e~i~~a~~~a~~ag~d 89 (387)
+.=..-++.+++.|..-+.+.+|... . .+-|+.+++..+...+ .+++=.|-..|.++.+ .++++|++
T Consensus 27 ~~a~~~~~al~~gGi~~iEiT~~tp~-----a---~~~i~~l~~~~~~~~p-~~~vGaGTVl~~e~a~----~a~~aGA~ 93 (222)
T PRK07114 27 EVAKKVIKACYDGGARVFEFTNRGDF-----A---HEVFAELVKYAAKELP-GMILGVGSIVDAATAA----LYIQLGAN 93 (222)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCc-----H---HHHHHHHHHHHHhhCC-CeEEeeEeCcCHHHHH----HHHHcCCC
Confidence 33345567778899999999987632 2 2333444332221112 4677777777877654 56889999
Q ss_pred EEecCCCCCCCCCCCcccccchhccccchhhhhhHHHHHHhhcccccccCCCCCCHHHHHHHHHHhcCCCcHHHHHHHhh
Q psy10250 90 FIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLH 169 (387)
Q Consensus 90 fvKTSTG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ID~T~L~~~~T~~~i~~l~~~A~~~~~~~~~~~~~~ 169 (387)
|+=|+ ||. +..+.+ .+--+.-++..-.|+.||.+..
T Consensus 94 FiVsP-~~~------~~v~~~--------------------~~~~~i~~iPG~~TpsEi~~A~----------------- 129 (222)
T PRK07114 94 FIVTP-LFN------PDIAKV--------------------CNRRKVPYSPGCGSLSEIGYAE----------------- 129 (222)
T ss_pred EEECC-CCC------HHHHHH--------------------HHHcCCCEeCCCCCHHHHHHHH-----------------
Confidence 99754 342 212221 2333455677788999996654
Q ss_pred hccCCCeEEEEECC------ccHHHHHHHhhhcCCCCCceEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeee---ec
Q psy10250 170 QQANVHTAAVCVYP------ARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDI---VI 240 (387)
Q Consensus 170 ~~~~~~~~aVcV~P------~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~---Vi 240 (387)
++|+..|=++| .|++..+.-| .+++++.+ |--+.+ ..-+.+.++.|+.-+=+ ..
T Consensus 130 ---~~Ga~~vKlFPA~~~G~~~ikal~~p~------p~i~~~pt------GGV~~~--~~n~~~yl~aGa~avg~Gs~L~ 192 (222)
T PRK07114 130 ---ELGCEIVKLFPGSVYGPGFVKAIKGPM------PWTKIMPT------GGVEPT--EENLKKWFGAGVTCVGMGSKLI 192 (222)
T ss_pred ---HCCCCEEEECcccccCHHHHHHHhccC------CCCeEEeC------CCCCcc--hhcHHHHHhCCCEEEEEChhhc
Confidence 45555566666 3444433333 35666665 332220 01256677788776543 24
Q ss_pred CchhhhcCChhHHHHHHHHHHHHh
Q psy10250 241 QRSLVLNNQWPELFSEVKQMKEKC 264 (387)
Q Consensus 241 n~~~lk~g~~~~v~~Ei~~v~~~~ 264 (387)
+-.++..++|+.+.+-.++..+..
T Consensus 193 ~~~~~~~~~~~~i~~~a~~~~~~~ 216 (222)
T PRK07114 193 PKEALAAKDYAGIEQKVREALAII 216 (222)
T ss_pred CccccccccHHHHHHHHHHHHHHH
Confidence 556678899999998766665544
No 388
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=70.00 E-value=22 Score=33.50 Aligned_cols=64 Identities=19% Similarity=0.247 Sum_probs=37.6
Q ss_pred HHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 288 ASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 288 a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
.++.+.+.|+|++-=-. -....+......+.|+.+.+.. .+.+=+.||||+.+++..++ .+|++
T Consensus 37 ~a~~~~~~G~~~l~i~d----l~~~~~~~~~~~~~i~~i~~~~--~~~l~v~GGi~~~~~~~~~~-----~~Ga~ 100 (241)
T PRK13585 37 VAKRWVDAGAETLHLVD----LDGAFEGERKNAEAIEKIIEAV--GVPVQLGGGIRSAEDAASLL-----DLGVD 100 (241)
T ss_pred HHHHHHHcCCCEEEEEe----chhhhcCCcccHHHHHHHHHHc--CCcEEEcCCcCCHHHHHHHH-----HcCCC
Confidence 34556789999874211 0001101111124555555544 35566699999999999999 48984
No 389
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=69.96 E-value=32 Score=34.43 Aligned_cols=76 Identities=12% Similarity=0.026 Sum_probs=49.3
Q ss_pred HHHHHHHHcCCCeeeeecch----------hHHhcCChhHHHHHHHHHHHHcccCccEEEEEeccCCCCHHHHHHHHHHH
Q psy10250 14 HEIELLAKQKVDEVDIVIQR----------SLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGELKTSENIYYASMTA 83 (387)
Q Consensus 14 ~E~~~a~~~GA~EiD~Vin~----------~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~~~e~i~~a~~~a 83 (387)
.-++.+.+.|+|.||+=+-. |...-.+.+.+.+=+++++++++-.+.+|+- .|+-.+.++....++.+
T Consensus 81 ~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR--~G~~~~~~~~~~~a~~l 158 (321)
T PRK10415 81 DAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIR--TGWAPEHRNCVEIAQLA 158 (321)
T ss_pred HHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEE--ccccCCcchHHHHHHHH
Confidence 33555667899999964322 3333346778888888888776423444544 56543333566677788
Q ss_pred HHcCCCEE
Q psy10250 84 MFAGSDFI 91 (387)
Q Consensus 84 ~~ag~dfv 91 (387)
.++|+|+|
T Consensus 159 e~~G~d~i 166 (321)
T PRK10415 159 EDCGIQAL 166 (321)
T ss_pred HHhCCCEE
Confidence 99999998
No 390
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=69.77 E-value=27 Score=35.10 Aligned_cols=134 Identities=14% Similarity=0.008 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHCCCCeeeeecCchhhhcC--ChhHHHHHHHHHHHHhCCCcceEEEEeeccCC----ChHHHHHHHHHHH
Q psy10250 220 TRLHEIELLAKQKVDEVDIVIQRSLVLNN--QWPELFSEVKQMKEKCGEKIHMKTILAVGELK----TSENIYCASMTAM 293 (387)
Q Consensus 220 ~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g--~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~----t~e~i~~a~~ia~ 293 (387)
.+..++...+..+|.+--+.+.+|....+ +.+ ...++..+++..++ .+ +|...+--. +.+++.++.+.+
T Consensus 65 ~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~e-~~~~~~~vr~~~~~-~p--~~~Nl~~~~~~~~~~~~~~~~i~~~- 139 (326)
T cd02811 65 EKAKEINRNLAEAAEELGIAMGVGSQRAALEDPE-LAESFTVVREAPPN-GP--LIANLGAVQLNGYGVEEARRAVEMI- 139 (326)
T ss_pred hHHHHHHHHHHHHHHHcCCCeEecCchhhccChh-hhhHHHHHHHhCCC-ce--EEeecCccccCCCCHHHHHHHHHhc-
Confidence 34455566666666776666666655332 223 44788888876653 23 222222211 456666665544
Q ss_pred HcCCCEEEcCCCC---CCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccC
Q psy10250 294 FAGSDFIKTSTGK---EKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLN 365 (387)
Q Consensus 294 ~aGaDfVKTSTGf---~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~ 365 (387)
++.+..|.-..+. .+.+. .+..-+++.|+.+++.++-.+-+|.+|--.+.++|..+. ++|++.+.
T Consensus 140 ~adalel~l~~~q~~~~~~~~--~df~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~-----~~Gvd~I~ 207 (326)
T cd02811 140 EADALAIHLNPLQEAVQPEGD--RDFRGWLERIEELVKALSVPVIVKEVGFGISRETAKRLA-----DAGVKAID 207 (326)
T ss_pred CCCcEEEeCcchHhhcCCCCC--cCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHH-----HcCCCEEE
Confidence 4444445432211 11122 123345577888888888889999998778899999888 59998775
No 391
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=69.43 E-value=57 Score=34.09 Aligned_cols=120 Identities=15% Similarity=0.131 Sum_probs=69.5
Q ss_pred eEEEEECCccHHHHHHHhhhcCCCCCceEEEEecCCCCCCCCHH----HH---------------HHHHHHHHHCCCCee
Q psy10250 176 TAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLE----TR---------------LHEIELLAKQKVDEV 236 (387)
Q Consensus 176 ~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~~e----~K---------------~~Ea~~Ai~~GAdEI 236 (387)
.+||.+.|.....+..+++ .++.+.++=..-|++....+ .| ..+++.+++.|||-|
T Consensus 145 ~aavg~~~~~~~~v~~lv~-----aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I 219 (404)
T PRK06843 145 GAAVSIDIDTIERVEELVK-----AHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCL 219 (404)
T ss_pred EEEEeCCHHHHHHHHHHHh-----cCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEE
Confidence 4566677777777777765 35555553234454433222 11 246778888999998
Q ss_pred eeecCch-----hhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCC
Q psy10250 237 DIVIQRS-----LVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGK 306 (387)
Q Consensus 237 D~Vin~~-----~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf 306 (387)
.+-+--+ ....|--..-..-+..+.++++. ..+-||-|-+.- +.++|.+ |+.+|||+|--.+=|
T Consensus 220 ~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~-~~vpVIAdGGI~-~~~Di~K----ALalGA~aVmvGs~~ 288 (404)
T PRK06843 220 KVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKN-TNICIIADGGIR-FSGDVVK----AIAAGADSVMIGNLF 288 (404)
T ss_pred EECCCCCcCCcceeecCCCCChHHHHHHHHHHHhh-cCCeEEEeCCCC-CHHHHHH----HHHcCCCEEEEccee
Confidence 8543222 22333111112233333444433 346789998877 6787865 467899999876655
No 392
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=69.42 E-value=7.9 Score=37.82 Aligned_cols=62 Identities=19% Similarity=0.157 Sum_probs=39.9
Q ss_pred HHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCc
Q psy10250 289 SMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDL 368 (387)
Q Consensus 289 ~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~ 368 (387)
++.=.++||+++.-=- .+ .+ .. +.|+.+.+.+ .+.|-+.||||+ +++..|+ .+|+
T Consensus 44 A~~~~~~Ga~~lHvVD-Lg-~~-n~-------~~i~~i~~~~--~~~v~vGGGIr~-e~v~~~l-----~aGa------- 98 (253)
T TIGR02129 44 AKLYKDDGVKGCHVIM-LG-PN-ND-------DAAKEALHAY--PGGLQVGGGIND-TNAQEWL-----DEGA------- 98 (253)
T ss_pred HHHHHHcCCCEEEEEE-CC-CC-cH-------HHHHHHHHhC--CCCEEEeCCcCH-HHHHHHH-----HcCC-------
Confidence 4556778997664211 11 12 33 2444554443 378899999998 9999999 5898
Q ss_pred ceeeccc
Q psy10250 369 FRIGASS 375 (387)
Q Consensus 369 ~RIGtSs 375 (387)
.|++.+|
T Consensus 99 ~rVvIGS 105 (253)
T TIGR02129 99 SHVIVTS 105 (253)
T ss_pred CEEEECc
Confidence 5766654
No 393
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=69.40 E-value=1.6e+02 Score=31.39 Aligned_cols=138 Identities=17% Similarity=0.132 Sum_probs=84.0
Q ss_pred cCCCCCCCC-HHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHH
Q psy10250 209 AGFPSGQYL-LETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYC 287 (387)
Q Consensus 209 igFP~G~~~-~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~ 287 (387)
.+.|.+..+ .+.-..-++.+.+.||+.|-+.=-.|.. ..+.+.+-++.+++..+. .-++.|+...=++.-.=..
T Consensus 135 f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~---~P~~~~~~i~~l~~~~~~--~~~v~l~~H~HND~GlAvA 209 (494)
T TIGR00973 135 FSCEDAGRTEIPFLARIVEAAINAGATTINIPDTVGYA---LPAEYGNLIKGLRENVPN--IDKAILSVHCHNDLGLAVA 209 (494)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC---CHHHHHHHHHHHHHhhcc--ccCceEEEEeCCCCChHHH
Confidence 478866655 5555555667788899987666445543 367777777788776653 2367888877755454445
Q ss_pred HHHHHHHcCCCEEEcCC-CCC--CCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCC
Q psy10250 288 ASMTAMFAGSDFIKTST-GKE--KTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGP 361 (387)
Q Consensus 288 a~~ia~~aGaDfVKTST-Gf~--~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga 361 (387)
.+..|+++||+.|-++- |.| .+++.++.+..++ +...+..|+.. || +++....+-.++.+..|-
T Consensus 210 NalaAv~aGa~~vd~tv~GlGERaGNa~le~vv~~L-------~~~~~~~g~~~--~i-dl~~L~~~s~~v~~~~g~ 276 (494)
T TIGR00973 210 NSLAAVQNGARQVECTINGIGERAGNAALEEVVMAL-------KVRKDFLGVET--GI-NTKEIYRTSRLVSQLTGM 276 (494)
T ss_pred HHHHHHHhCCCEEEEEeecccccccCccHHHHHHHH-------HHhcccCCCCC--Cc-CHHHHHHHHHHHHHHhCC
Confidence 57789999999999876 444 3567776443322 11122233432 33 244444555555566664
No 394
>KOG1436|consensus
Probab=69.28 E-value=11 Score=38.29 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=33.3
Q ss_pred HHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 321 SAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 321 ~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
+.||.|..++.++|.|=-.|||.+-+||.+.+ .+||.
T Consensus 319 ~~vR~mY~lt~g~IpiIG~GGV~SG~DA~Eki-----raGAS 355 (398)
T KOG1436|consen 319 NTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKI-----RAGAS 355 (398)
T ss_pred HHHHHHHHhccCCCceEeecCccccHhHHHHH-----hcCch
Confidence 56888999999999999999999999999999 58873
No 395
>PRK09989 hypothetical protein; Provisional
Probab=69.23 E-value=64 Score=30.58 Aligned_cols=118 Identities=12% Similarity=0.140 Sum_probs=67.5
Q ss_pred CCCeEEEEE---CCccHHHHHHHhhhcCCCCCceEEEEecCCCC-----CC-----CC--HHHHHHHH----HHHHHCCC
Q psy10250 173 NVHTAAVCV---YPARVVDVIKVLDRENARDDVKVASVAAGFPS-----GQ-----YL--LETRLHEI----ELLAKQKV 233 (387)
Q Consensus 173 ~~~~~aVcV---~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~-----G~-----~~--~e~K~~Ea----~~Ai~~GA 233 (387)
++||.+|=+ ++.....+++.|++ .++++++. +.|. |. .+ .+...... +.|.+.|+
T Consensus 26 ~~Gfd~VEl~~~~~~~~~~~~~~l~~----~Gl~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~A~~lg~ 99 (258)
T PRK09989 26 KAGFDAVEFLFPYDYSTLQIQKQLEQ----NHLTLALF--NTAPGDINAGEWGLSALPGREHEARADIDLALEYALALNC 99 (258)
T ss_pred HcCCCEEEECCcccCCHHHHHHHHHH----cCCcEEEe--ccCCCccCCCCCcccCCCccHHHHHHHHHHHHHHHHHhCc
Confidence 678877765 44567788888885 68888765 3332 21 11 11112233 34567899
Q ss_pred CeeeeecCchhhhcC-----ChhHHHHHHHHHHHHhCCCcceEEEEee-------cc-CCChHHHHHHHHHHHHcCCCEE
Q psy10250 234 DEVDIVIQRSLVLNN-----QWPELFSEVKQMKEKCGEKIHMKTILAV-------GE-LKTSENIYCASMTAMFAGSDFI 300 (387)
Q Consensus 234 dEID~Vin~~~lk~g-----~~~~v~~Ei~~v~~~~~~~~~lKvIlEt-------~~-L~t~e~i~~a~~ia~~aGaDfV 300 (387)
+-|= +..+.+..+ .|+.+.+-++++.+.+.+ .-+++.+|. ++ +++ ...+..++.+.+.+.+
T Consensus 100 ~~v~--v~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~-~gv~l~lE~l~~~~~~~~~~~~---~~~~~~ll~~v~~~~v 173 (258)
T PRK09989 100 EQVH--VMAGVVPAGEDAERYRAVFIDNLRYAADRFAP-HGKRILVEALSPGVKPHYLFSS---QYQALAIVEEVARDNV 173 (258)
T ss_pred CEEE--ECccCCCCCCCHHHHHHHHHHHHHHHHHHHHh-cCCEEEEEeCCCCCCCCCccCC---HHHHHHHHHHcCCCCe
Confidence 8763 223332222 234466777777776654 457788887 22 322 4456667777777766
Q ss_pred Ec
Q psy10250 301 KT 302 (387)
Q Consensus 301 KT 302 (387)
|-
T Consensus 174 ~l 175 (258)
T PRK09989 174 FI 175 (258)
T ss_pred EE
Confidence 53
No 396
>PRK15108 biotin synthase; Provisional
Probab=69.19 E-value=1.3e+02 Score=30.56 Aligned_cols=127 Identities=17% Similarity=0.115 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHcccCccEEEEEeccCCCCHHHHHHHHHHHHHc
Q psy10250 7 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGELKTSENIYYASMTAMFA 86 (387)
Q Consensus 7 ~~~~~K~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~~~e~i~~a~~~a~~a 86 (387)
.+.+-=+..++++.+.|++++-+|.-......-+++++.+=++.+++ ..+.+++-.|.| +.+... ...++
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~-----~~i~v~~s~G~l-s~e~l~----~LkeA 145 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKA-----MGLETCMTLGTL-SESQAQ----RLANA 145 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHh-----CCCEEEEeCCcC-CHHHHH----HHHHc
Confidence 45666677788888899999866532111112234555555555542 235778888988 555544 33688
Q ss_pred CCCE----EecCCCCCCCCCCCcccccchhccccchhhhhhHHHHHHh----hcccccccCCCCCCHHHHHHHHHHhc
Q psy10250 87 GSDF----IKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKI----IEFIDLTTLSGDDTEAVVETLTLKAI 156 (387)
Q Consensus 87 g~df----vKTSTG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~ID~T~L~~~~T~~~i~~l~~~A~ 156 (387)
|+|. ++|+-++... ......| ++....++.+ +...-+-++....|.+|+.++.....
T Consensus 146 Gld~~n~~leT~p~~f~~---I~~~~~~----------~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed~v~~~~~l~ 210 (345)
T PRK15108 146 GLDYYNHNLDTSPEFYGN---IITTRTY----------QERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLA 210 (345)
T ss_pred CCCEEeeccccChHhcCC---CCCCCCH----------HHHHHHHHHHHHcCCceeeEEEEeCCCCHHHHHHHHHHHH
Confidence 9995 6676565432 2112233 2222222222 22233336666778888888877776
No 397
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=68.92 E-value=45 Score=31.63 Aligned_cols=118 Identities=17% Similarity=0.240 Sum_probs=67.9
Q ss_pred HHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCC-Ccc--------eEEEEeeccCCChHHHHHHHHHH
Q psy10250 222 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGE-KIH--------MKTILAVGELKTSENIYCASMTA 292 (387)
Q Consensus 222 ~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~-~~~--------lKvIlEt~~L~t~e~i~~a~~ia 292 (387)
...++.+++.||+- +|++-..+.+.++ +.++.+..+. ... .+|...-..-.+.-......+.+
T Consensus 85 ~ed~~~ll~~Ga~~--Vvigt~~~~~~~~------l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~ 156 (229)
T PF00977_consen 85 IEDAERLLDAGADR--VVIGTEALEDPEL------LEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRL 156 (229)
T ss_dssp HHHHHHHHHTT-SE--EEESHHHHHCCHH------HHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHhCCCE--EEeChHHhhchhH------HHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHH
Confidence 45688999999985 8899888875433 3334443332 111 12222111111112355566778
Q ss_pred HHcCCC-EEEcCCCCCCC--CCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCC
Q psy10250 293 MFAGSD-FIKTSTGKEKT--NATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGP 361 (387)
Q Consensus 293 ~~aGaD-fVKTSTGf~~~--gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga 361 (387)
.+.|+. +|=|+-..... |..+ +.++.+++.+ ++.+=+||||++.++...+. ..|.
T Consensus 157 ~~~g~~~ii~tdi~~dGt~~G~d~-------~~~~~l~~~~--~~~viasGGv~~~~Dl~~l~-----~~G~ 214 (229)
T PF00977_consen 157 EELGAGEIILTDIDRDGTMQGPDL-------ELLKQLAEAV--NIPVIASGGVRSLEDLRELK-----KAGI 214 (229)
T ss_dssp HHTT-SEEEEEETTTTTTSSS--H-------HHHHHHHHHH--SSEEEEESS--SHHHHHHHH-----HTTE
T ss_pred HhcCCcEEEEeeccccCCcCCCCH-------HHHHHHHHHc--CCCEEEecCCCCHHHHHHHH-----HCCC
Confidence 888887 77777655433 3333 3455555555 68889999999999999998 4775
No 398
>PRK05481 lipoyl synthase; Provisional
Probab=68.80 E-value=26 Score=34.57 Aligned_cols=145 Identities=13% Similarity=0.114 Sum_probs=77.4
Q ss_pred EEEecCCCCCC---CCHHHHHHHHHHHHHCCCCeeeee-cCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCC
Q psy10250 205 ASVAAGFPSGQ---YLLETRLHEIELLAKQKVDEVDIV-IQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELK 280 (387)
Q Consensus 205 ~tVvigFP~G~---~~~e~K~~Ea~~Ai~~GAdEID~V-in~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~ 280 (387)
|+- ..||.+. .+.+.-+.+++++.+.|++||-++ .|.+.+.....+.+.+-++.|++..++ ..+++..-.. +.
T Consensus 67 C~F-C~i~~~r~~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p~-irI~~l~~~~-~~ 143 (289)
T PRK05481 67 CPF-CDVATGRPLPLDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELNPG-TTIEVLIPDF-RG 143 (289)
T ss_pred CCC-ceeCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhhCCC-cEEEEEccCC-CC
Confidence 444 4455544 578999999999999999999998 222211122345666777777765554 3444433221 11
Q ss_pred ChHHHHHHHHHHHHcCCCEEEc----CC---CCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEe---ccCCCHHHHHH
Q psy10250 281 TSENIYCASMTAMFAGSDFIKT----ST---GKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPA---GGISTFEDSVR 350 (387)
Q Consensus 281 t~e~i~~a~~ia~~aGaDfVKT----ST---Gf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKas---GGIrt~~~a~~ 350 (387)
..+++ ...+++|++.+.- |. -.-..+.|.+.. ++.++.+++..+ .+.+... |=.-|.++...
T Consensus 144 ~~e~L----~~l~~ag~~i~~~~~ets~~vlk~m~r~~t~e~~---le~i~~ar~~~p-gi~~~t~~IvGfGET~ed~~~ 215 (289)
T PRK05481 144 RMDAL----LTVLDARPDVFNHNLETVPRLYKRVRPGADYERS---LELLKRAKELHP-GIPTKSGLMVGLGETDEEVLE 215 (289)
T ss_pred CHHHH----HHHHhcCcceeeccccChHHHHHHhCCCCCHHHH---HHHHHHHHHhCC-CCeEeeeeEEECCCCHHHHHH
Confidence 12223 3466788887762 11 001124455533 234444444432 2333321 32367777777
Q ss_pred HHHHHHHhcCC
Q psy10250 351 WIYLVLIMLGP 361 (387)
Q Consensus 351 ~i~l~~~~~Ga 361 (387)
.+..+++ +|.
T Consensus 216 tl~~lre-l~~ 225 (289)
T PRK05481 216 VMDDLRA-AGV 225 (289)
T ss_pred HHHHHHh-cCC
Confidence 7665444 465
No 399
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=68.51 E-value=14 Score=35.12 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=48.1
Q ss_pred HHHHHHHcCCCEEEc--CCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccC
Q psy10250 288 ASMTAMFAGSDFIKT--STGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLN 365 (387)
Q Consensus 288 a~~ia~~aGaDfVKT--STGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~ 365 (387)
.++.-.+.|+|++-- =.+....+... +.|+.+.+.+ .+.+=+-||||+.+++..|+ .+|++
T Consensus 40 ~a~~~~~~g~~~l~i~DLd~~~~~~~n~-------~~i~~i~~~~--~~~v~vgGGir~~edv~~~l-----~~Ga~--- 102 (233)
T cd04723 40 VARAYKELGFRGLYIADLDAIMGRGDND-------EAIRELAAAW--PLGLWVDGGIRSLENAQEWL-----KRGAS--- 102 (233)
T ss_pred HHHHHHHCCCCEEEEEeCccccCCCccH-------HHHHHHHHhC--CCCEEEecCcCCHHHHHHHH-----HcCCC---
Confidence 445556779987642 12322233344 3455555444 36688899999999999999 58973
Q ss_pred CCcceeeccchH-HHHHHHHh
Q psy10250 366 KDLFRIGASSLL-NNILQELE 385 (387)
Q Consensus 366 ~~~~RIGtSs~~-~il~~~~~ 385 (387)
..-|||+..- +.+.+.++
T Consensus 103 --~viigt~~~~~~~~~~~~~ 121 (233)
T cd04723 103 --RVIVGTETLPSDDDEDRLA 121 (233)
T ss_pred --eEEEcceeccchHHHHHHH
Confidence 3446887532 34444443
No 400
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=68.43 E-value=68 Score=32.84 Aligned_cols=82 Identities=15% Similarity=0.166 Sum_probs=55.8
Q ss_pred ceEEEEeeccCCChHHHHHHHHHHH-HcCCCEEE--cCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCH
Q psy10250 269 HMKTILAVGELKTSENIYCASMTAM-FAGSDFIK--TSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTF 345 (387)
Q Consensus 269 ~lKvIlEt~~L~t~e~i~~a~~ia~-~aGaDfVK--TSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~ 345 (387)
...+.+-++.- ++...++..+.. .+|+|||- ++-|++ ..+++.|+.+++..++ +.| .+|.|-|.
T Consensus 96 ~~~~~vavG~~--~~d~er~~~L~~~~~g~D~iviD~AhGhs---------~~~i~~ik~ik~~~P~-~~v-IaGNV~T~ 162 (346)
T PRK05096 96 LKHVMVSTGTS--DADFEKTKQILALSPALNFICIDVANGYS---------EHFVQFVAKAREAWPD-KTI-CAGNVVTG 162 (346)
T ss_pred cceEEEEecCC--HHHHHHHHHHHhcCCCCCEEEEECCCCcH---------HHHHHHHHHHHHhCCC-CcE-EEecccCH
Confidence 35666666644 466777766665 37999976 455542 1234667888887755 333 57999999
Q ss_pred HHHHHHHHHHHHhcCCCccCCCcceeec
Q psy10250 346 EDSVRWIYLVLIMLGPDWLNKDLFRIGA 373 (387)
Q Consensus 346 ~~a~~~i~l~~~~~Ga~w~~~~~~RIGt 373 (387)
+.+..|+ .+|+| ..|+|.
T Consensus 163 e~a~~Li-----~aGAD-----~vKVGI 180 (346)
T PRK05096 163 EMVEELI-----LSGAD-----IVKVGI 180 (346)
T ss_pred HHHHHHH-----HcCCC-----EEEEcc
Confidence 9999999 59986 456544
No 401
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=68.14 E-value=99 Score=28.39 Aligned_cols=112 Identities=18% Similarity=0.209 Sum_probs=56.2
Q ss_pred HHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCC
Q psy10250 225 IELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTST 304 (387)
Q Consensus 225 a~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTST 304 (387)
.+.+.+.|+|-+=+... ..+...++++.+++ ..+++++-+. ..++.+..+. ...++|||--.+
T Consensus 77 i~~~~~~g~d~v~vh~~-------~~~~~~~~~~~~~~-----~~~~~g~~~~-~~t~~e~~~~----~~~~~d~i~~~~ 139 (220)
T PRK05581 77 VPDFAKAGADIITFHVE-------ASEHIHRLLQLIKS-----AGIKAGLVLN-PATPLEPLED----VLDLLDLVLLMS 139 (220)
T ss_pred HHHHHHcCCCEEEEeec-------cchhHHHHHHHHHH-----cCCEEEEEEC-CCCCHHHHHH----HHhhCCEEEEEE
Confidence 35556778876543332 12333444444443 2356777553 2233333322 234578764432
Q ss_pred ---CCCCCCCChhhhHhHHHHHHHHHHHcCC---CceEeEeccCCCHHHHHHHHHHHHHhcCCCc
Q psy10250 305 ---GKEKTNATIPAGIIMCSAIKHFHKLSGK---KIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 363 (387)
Q Consensus 305 ---Gf~~~gat~~~~~~m~~~v~~~~~~~~~---~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w 363 (387)
|.+.. .... ..++.++.+++..+. ...|=+.|||+. +++..++ ..|++.
T Consensus 140 ~~~g~tg~-~~~~---~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~-----~~GaD~ 194 (220)
T PRK05581 140 VNPGFGGQ-KFIP---EVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECA-----EAGADV 194 (220)
T ss_pred ECCCCCcc-cccH---HHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHH-----HcCCCE
Confidence 22111 1111 123444554444332 134567899999 8998888 488864
No 402
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=68.12 E-value=1.2e+02 Score=29.56 Aligned_cols=146 Identities=14% Similarity=0.069 Sum_probs=79.7
Q ss_pred CCceEEEEecCC-CCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeecc
Q psy10250 200 DDVKVASVAAGF-PSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGE 278 (387)
Q Consensus 200 ~~v~v~tVvigF-P~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~ 278 (387)
+++-.+.+ .=| +.|.-..+.=...+++.++.|++-|=+-=..|..-.=..++-.+=++.+++.+.+ .+.||.=++.
T Consensus 2 ~Gi~~a~v-TPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~--~~pvi~gv~~ 78 (289)
T cd00951 2 SGLLSFPV-THFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAG--RVPVLAGAGY 78 (289)
T ss_pred CCeEEEee-cCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC--CCCEEEecCC
Confidence 34555555 455 4566667777777888888888875433333322222223223333444454443 4667777774
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHH-----------------------HHHHHHHHHcCCCce
Q psy10250 279 LKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMC-----------------------SAIKHFHKLSGKKIG 335 (387)
Q Consensus 279 L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~-----------------------~~v~~~~~~~~~~~g 335 (387)
++. +-.+.++.+.++|+|.+=-.+-|... .+.+.+...+ +.++.+.+..++=+|
T Consensus 79 -~t~-~~i~~a~~a~~~Gad~v~~~pP~y~~-~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~~~pnivg 155 (289)
T cd00951 79 -GTA-TAIAYAQAAEKAGADGILLLPPYLTE-APQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAERCPNLVG 155 (289)
T ss_pred -CHH-HHHHHHHHHHHhCCCEEEECCCCCCC-CCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEEE
Confidence 554 44567788888888876555543221 1222222111 233334332456689
Q ss_pred EeEeccCCCHHHHHHHHH
Q psy10250 336 LKPAGGISTFEDSVRWIY 353 (387)
Q Consensus 336 IKasGGIrt~~~a~~~i~ 353 (387)
||-|.| +..+..+++.
T Consensus 156 iKds~~--d~~~~~~~~~ 171 (289)
T cd00951 156 FKDGVG--DIELMRRIVA 171 (289)
T ss_pred EEeCCC--CHHHHHHHHH
Confidence 999866 5666556553
No 403
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=67.49 E-value=63 Score=30.53 Aligned_cols=67 Identities=15% Similarity=0.129 Sum_probs=48.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcC
Q psy10250 281 TSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG 360 (387)
Q Consensus 281 t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~G 360 (387)
+.++....++.+.++|...|--.- .|+.. .+.|+.+++..+ ++-| -+|.|-|.+|+...+ .+|
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~------~t~~a----~~~i~~l~~~~~-~~~v-GAGTVl~~~~a~~a~-----~aG 80 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTL------RTPVA----LDAIRLLRKEVP-DALI-GAGTVLNPEQLRQAV-----DAG 80 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeC------CCccH----HHHHHHHHHHCC-CCEE-EEEeCCCHHHHHHHH-----HcC
Confidence 668888999999999999987433 11211 145667776655 3332 369999999999999 599
Q ss_pred CCcc
Q psy10250 361 PDWL 364 (387)
Q Consensus 361 a~w~ 364 (387)
++++
T Consensus 81 A~Fi 84 (204)
T TIGR01182 81 AQFI 84 (204)
T ss_pred CCEE
Confidence 9744
No 404
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=67.14 E-value=1.3e+02 Score=29.58 Aligned_cols=126 Identities=20% Similarity=0.252 Sum_probs=75.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccC----------
Q psy10250 210 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGEL---------- 279 (387)
Q Consensus 210 gFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L---------- 279 (387)
-.=||.. ...++.|++.|.+-| .++-+.+ ++++..+..+++++.|+. .-+.|=.|.+.+
T Consensus 80 hlDH~~~-----~e~i~~ai~~Gf~sV--mid~s~l---~~~eni~~t~~v~~~a~~-~gv~Ve~ElG~~gg~ed~~~g~ 148 (282)
T TIGR01859 80 HLDHGSS-----YESCIKAIKAGFSSV--MIDGSHL---PFEENLALTKKVVEIAHA-KGVSVEAELGTLGGIEDGVDEK 148 (282)
T ss_pred ECCCCCC-----HHHHHHHHHcCCCEE--EECCCCC---CHHHHHHHHHHHHHHHHH-cCCEEEEeeCCCcCcccccccc
Confidence 4555653 457888899998763 4454443 577777778888888865 234555555542
Q ss_pred ----CChHHHHHHHHHHHHcCCCEEEcCCCC--C--CCCCChhhhHhHHHHHHHHHHHcCCCceEeEec--cCCCHHHHH
Q psy10250 280 ----KTSENIYCASMTAMFAGSDFIKTSTGK--E--KTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAG--GISTFEDSV 349 (387)
Q Consensus 280 ----~t~e~i~~a~~ia~~aGaDfVKTSTGf--~--~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasG--GIrt~~~a~ 349 (387)
+++|+. .+...+.|+||+=-|.|= + +..+.+. ++-++.+++.+ .+.+.+=| ||.. ++..
T Consensus 149 ~~~~t~~eea---~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~-----~e~L~~i~~~~--~iPlv~hGgSGi~~-e~i~ 217 (282)
T TIGR01859 149 EAELADPDEA---EQFVKETGVDYLAAAIGTSHGKYKGEPGLD-----FERLKEIKELT--NIPLVLHGASGIPE-EQIK 217 (282)
T ss_pred ccccCCHHHH---HHHHHHHCcCEEeeccCccccccCCCCccC-----HHHHHHHHHHh--CCCEEEECCCCCCH-HHHH
Confidence 244444 333445699999855442 1 1111121 24456666655 48899999 8874 4456
Q ss_pred HHHHHHHHhcCCC
Q psy10250 350 RWIYLVLIMLGPD 362 (387)
Q Consensus 350 ~~i~l~~~~~Ga~ 362 (387)
..+ .+|++
T Consensus 218 ~~i-----~~Gi~ 225 (282)
T TIGR01859 218 KAI-----KLGIA 225 (282)
T ss_pred HHH-----HcCCC
Confidence 666 47763
No 405
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=66.96 E-value=23 Score=33.56 Aligned_cols=72 Identities=17% Similarity=0.112 Sum_probs=52.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcC
Q psy10250 281 TSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG 360 (387)
Q Consensus 281 t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~G 360 (387)
+.++....++.+.++|.+.|--. +.. ++. .+.|+.+++..++ +- =-+|.|-|.+|+...+ .+|
T Consensus 25 ~~~~a~~i~~al~~~Gi~~iEit--l~~----~~~----~~~I~~l~~~~p~-~~-IGAGTVl~~~~a~~a~-----~aG 87 (212)
T PRK05718 25 KLEDAVPLAKALVAGGLPVLEVT--LRT----PAA----LEAIRLIAKEVPE-AL-IGAGTVLNPEQLAQAI-----EAG 87 (212)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe--cCC----ccH----HHHHHHHHHHCCC-CE-EEEeeccCHHHHHHHH-----HcC
Confidence 56888899999999999999754 422 211 2467777777653 22 2379999999999999 599
Q ss_pred CCcc-CCCcc
Q psy10250 361 PDWL-NKDLF 369 (387)
Q Consensus 361 a~w~-~~~~~ 369 (387)
++|+ +|+..
T Consensus 88 A~FivsP~~~ 97 (212)
T PRK05718 88 AQFIVSPGLT 97 (212)
T ss_pred CCEEECCCCC
Confidence 9866 55443
No 406
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=66.94 E-value=1.6e+02 Score=31.64 Aligned_cols=140 Identities=14% Similarity=0.060 Sum_probs=81.6
Q ss_pred Hhhccccc-ccCCCCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCC-CceEEE
Q psy10250 129 KIIEFIDL-TTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARD-DVKVAS 206 (387)
Q Consensus 129 ~l~~~ID~-T~L~~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~-~v~v~t 206 (387)
.++..++. --|+++...+++...-+++. +.++++-. .... .-|.+. .+.+ .+ +++|.+
T Consensus 97 ~~l~~~~~g~~lS~~~pAd~~~~~~~~~~-----~~~~~~e~--~~~~---~~i~~~-------~i~~---~~p~~~v~a 156 (499)
T TIGR00284 97 DIIEILRSGIKLSTEEPADEVVLEIKKLE-----EYTSKIEE--READ---FRIGSL-------KIPL---KPPPLRVVA 156 (499)
T ss_pred HHHHhhcccccCCCCCcHHHHHHHHHHHH-----HHHHHhhh--cchh---hhccCc-------CCCC---CCCCeEEEE
Confidence 34555666 55777777777766655554 44554411 0111 111111 1222 23 588888
Q ss_pred EecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHH
Q psy10250 207 VAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIY 286 (387)
Q Consensus 207 VvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~ 286 (387)
=++.-|.- +.-...+++.+++|||=||+=...+. -+.+.+..-++.+++.+ .+.+-|.|. +.+.+
T Consensus 157 EI~~a~~l----~~i~~~A~~~~~~GADIIDIG~~st~---p~~~~v~~~V~~l~~~~----~~pISIDT~---~~~v~- 221 (499)
T TIGR00284 157 EIPPTVAE----DGIEGLAARMERDGADMVALGTGSFD---DDPDVVKEKVKTALDAL----DSPVIADTP---TLDEL- 221 (499)
T ss_pred EEcCCcch----HHHHHHHHHHHHCCCCEEEECCCcCC---CcHHHHHHHHHHHHhhC----CCcEEEeCC---CHHHH-
Confidence 76677753 67788899999999999998755431 12334555555555432 244666664 33433
Q ss_pred HHHHHHHHcCCCEEEcCCCC
Q psy10250 287 CASMTAMFAGSDFIKTSTGK 306 (387)
Q Consensus 287 ~a~~ia~~aGaDfVKTSTGf 306 (387)
+.|+++|+|+|..-+|.
T Consensus 222 ---eaAL~aGAdiINsVs~~ 238 (499)
T TIGR00284 222 ---YEALKAGASGVIMPDVE 238 (499)
T ss_pred ---HHHHHcCCCEEEECCcc
Confidence 45667799999987774
No 407
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=66.70 E-value=1e+02 Score=29.39 Aligned_cols=129 Identities=9% Similarity=-0.017 Sum_probs=67.2
Q ss_pred HHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEE-eecc-----CC--Ch-------HHHHHH
Q psy10250 224 EIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTIL-AVGE-----LK--TS-------ENIYCA 288 (387)
Q Consensus 224 Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIl-Et~~-----L~--t~-------e~i~~a 288 (387)
.++.+.+.|.+-|++.+.-....-..++.-..++.++++.+.. .-+++.- ..+. +. ++ +.+.++
T Consensus 26 ~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 104 (283)
T PRK13209 26 KLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVE-TGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRKA 104 (283)
T ss_pred HHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHH-cCCceeEEecccccccCCCCCCHHHHHHHHHHHHHH
Confidence 4556668899999997542111001111123455566655533 1233321 1110 11 11 235678
Q ss_pred HHHHHHcCCCEEEcCCCCCCCCCChh-hhHhHHHHHHHH---HHHcCCCceEeEe--ccCCCHHHHHHHHH
Q psy10250 289 SMTAMFAGSDFIKTSTGKEKTNATIP-AGIIMCSAIKHF---HKLSGKKIGLKPA--GGISTFEDSVRWIY 353 (387)
Q Consensus 289 ~~ia~~aGaDfVKTSTGf~~~gat~~-~~~~m~~~v~~~---~~~~~~~~gIKas--GGIrt~~~a~~~i~ 353 (387)
++.|.+.|+.+|...++..+.+.+.+ ....+.+.++.+ .+..|-++.+-.- --+.|.++++.+++
T Consensus 105 i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~~~~~~~~~~~~~ll~ 175 (283)
T PRK13209 105 IQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEIMDTPFMNSISKALGYAH 175 (283)
T ss_pred HHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeecCCcccCCHHHHHHHHH
Confidence 89999999999987654222222222 222333333333 3334556666653 34578899999986
No 408
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=66.65 E-value=66 Score=31.50 Aligned_cols=127 Identities=21% Similarity=0.276 Sum_probs=67.5
Q ss_pred HHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCC
Q psy10250 225 IELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTST 304 (387)
Q Consensus 225 a~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTST 304 (387)
+++|.+.|+|-+ +++|+.. +|-..++++|.. .-+..|.=.+--++++.|.+.++.+ .|-=|.-+++
T Consensus 108 ~~~~~~aGvdGl-IipDLP~----------ee~~~~~~~~~~-~gl~~I~lv~p~t~~~Ri~~i~~~a--~gFiY~vs~~ 173 (259)
T PF00290_consen 108 FKEAKEAGVDGL-IIPDLPP----------EESEELREAAKK-HGLDLIPLVAPTTPEERIKKIAKQA--SGFIYLVSRM 173 (259)
T ss_dssp HHHHHHHTEEEE-EETTSBG----------GGHHHHHHHHHH-TT-EEEEEEETTS-HHHHHHHHHH---SSEEEEESSS
T ss_pred HHHHHHcCCCEE-EEcCCCh----------HHHHHHHHHHHH-cCCeEEEEECCCCCHHHHHHHHHhC--CcEEEeeccC
Confidence 566677788776 4456652 233344455532 2366666665554555554433332 4666777777
Q ss_pred CCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEec-cCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccchHHHHHH
Q psy10250 305 GKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAG-GISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQ 382 (387)
Q Consensus 305 Gf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasG-GIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs~~~il~~ 382 (387)
|-......++ .-+-+-++.+++.+ .+.|= .| ||+|.+|+..+. .|+| ..-|| |..++++.+
T Consensus 174 GvTG~~~~~~--~~l~~~i~~ik~~~--~~Pv~-vGFGI~~~e~~~~~~------~~aD-----GvIVG-Sa~v~~i~~ 235 (259)
T PF00290_consen 174 GVTGSRTELP--DELKEFIKRIKKHT--DLPVA-VGFGISTPEQAKKLA------AGAD-----GVIVG-SAFVKIIEE 235 (259)
T ss_dssp SSSSTTSSCH--HHHHHHHHHHHHTT--SS-EE-EESSS-SHHHHHHHH------TTSS-----EEEES-HHHHHHHHH
T ss_pred CCCCCcccch--HHHHHHHHHHHhhc--CcceE-EecCCCCHHHHHHHH------ccCC-----EEEEC-HHHHHHHHH
Confidence 7432222222 11224455556555 33333 35 999999999998 5664 34555 556666554
No 409
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=66.64 E-value=17 Score=36.18 Aligned_cols=77 Identities=13% Similarity=0.165 Sum_probs=46.7
Q ss_pred HHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHcccCccEEEEEec-cCCCCHHHHHHHHHHHHHcCCCEE
Q psy10250 13 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAV-GELKTSENIYYASMTAMFAGSDFI 91 (387)
Q Consensus 13 ~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt-~~L~~~e~i~~a~~~a~~ag~dfv 91 (387)
..|+++|++.|||-|=+ + ++ --++++++++..+.. --++++|. |=. |.+.+..-+ ..|+|||
T Consensus 199 leqa~ea~~agaDiI~L--------D-n~--~~e~l~~av~~~~~~-~~~~~leaSGGI-~~~ni~~yA----~tGvD~I 261 (284)
T PRK06096 199 PKEAIAALRAQPDVLQL--------D-KF--SPQQATEIAQIAPSL-APHCTLSLAGGI-NLNTLKNYA----DCGIRLF 261 (284)
T ss_pred HHHHHHHHHcCCCEEEE--------C-CC--CHHHHHHHHHHhhcc-CCCeEEEEECCC-CHHHHHHHH----hcCCCEE
Confidence 56899999999876543 2 22 134555565554310 12455665 344 777776444 4599999
Q ss_pred ecCCCCCCCCCCCcccccc
Q psy10250 92 KTSTGKEKTNATIPADLTR 110 (387)
Q Consensus 92 KTSTG~~~~gat~~~~~~~ 110 (387)
|||.- ..+ ++.|+++
T Consensus 262 --s~gal-~~a-~~~Disl 276 (284)
T PRK06096 262 --ITSAP-YYA-APADIKV 276 (284)
T ss_pred --EECcc-ccC-CCcCeEE
Confidence 66654 444 6778877
No 410
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=65.96 E-value=31 Score=34.04 Aligned_cols=177 Identities=11% Similarity=0.109 Sum_probs=88.3
Q ss_pred HHHHHHcCCCEEec-CCC-CCCCCCCCcccccchhccccchhhhhhHHHHHHhhccccccc----CCCCCCHHHHHHHHH
Q psy10250 80 SMTAMFAGSDFIKT-STG-KEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEFIDLTT----LSGDDTEAVVETLTL 153 (387)
Q Consensus 80 ~~~a~~ag~dfvKT-STG-~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ID~T~----L~~~~T~~~i~~l~~ 153 (387)
++.+...|+|||=+ ++| |-..|. .-.-.+ ..|-+-|.+ -.+..+++++.+.+|= +..++...++..+++
T Consensus 28 Ak~ae~gGaDlI~~ynsGrfR~~G~--~Slagl-lpygnaN~i--v~em~~eiLp~v~~tPViaGv~atDP~~~~~~fl~ 102 (268)
T PF09370_consen 28 AKCAEKGGADLILIYNSGRFRMAGR--GSLAGL-LPYGNANEI--VMEMAREILPVVKDTPVIAGVCATDPFRDMDRFLD 102 (268)
T ss_dssp HHHHHHTT-SEEEE-HHHHHHHTT----GGGGG-BTEEEHHHH--HHHHHHHHGGG-SSS-EEEEE-TT-TT--HHHHHH
T ss_pred hHHHHhcCCCEEEEecchhHhhCCC--cchhhh-hcccCHhHH--HHHHHHhhhhhccCCCEEEEecCcCCCCcHHHHHH
Confidence 56788999999765 444 322232 322233 345555664 1234488999999873 577788889999999
Q ss_pred HhcCCCcHHHHHHHhhhccCCCeEEEEECCcc---HHHHHHHhhhcCCC-----------CCceEEEEecCCCCCCCCHH
Q psy10250 154 KAIQPLSEELKEKVLHQQANVHTAAVCVYPAR---VVDVIKVLDRENAR-----------DDVKVASVAAGFPSGQYLLE 219 (387)
Q Consensus 154 ~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~---v~~a~~~L~~~~~~-----------~~v~v~tVvigFP~G~~~~e 219 (387)
+-+ +.||.+|.=+|+. --.-|+.|...+-+ ....+-|+ +|=+
T Consensus 103 ~lk----------------~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~--~yvf------ 158 (268)
T PF09370_consen 103 ELK----------------ELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTT--AYVF------ 158 (268)
T ss_dssp HHH----------------HHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE----EE-------
T ss_pred HHH----------------HhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeee--eeec------
Confidence 998 6899999999952 11222222211000 01122233 2222
Q ss_pred HHHHHHHHHHHCCCCeeeeecCchhhhcCCh--------hHHHHHHHHHHHHhCC-CcceEEEEeeccCCChHHHHHH
Q psy10250 220 TRLHEIELLAKQKVDEVDIVIQRSLVLNNQW--------PELFSEVKQMKEKCGE-KIHMKTILAVGELKTSENIYCA 288 (387)
Q Consensus 220 ~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~--------~~v~~Ei~~v~~~~~~-~~~lKvIlEt~~L~t~e~i~~a 288 (387)
-..|++...+.|||- +|++.|+-..|.. +.-.+.++++.+++.. +--+=++.--+-+.++++....
T Consensus 159 -~~e~A~~M~~AGaDi--iv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~~~~ 233 (268)
T PF09370_consen 159 -NEEQARAMAEAGADI--IVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPEDAQYV 233 (268)
T ss_dssp -SHHHHHHHHHHT-SE--EEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHHHHHH
T ss_pred -CHHHHHHHHHcCCCE--EEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 246888888999998 5777776665532 4444566666666642 1123444556666666665443
No 411
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=65.73 E-value=1.2e+02 Score=28.44 Aligned_cols=156 Identities=14% Similarity=0.069 Sum_probs=83.6
Q ss_pred EEEEEeccCCCCHHHHHHHHHHHHHcCCCEEecCCCCCCCCCCCcccccchhccccchhhhhhHHHHHHhhcccccccCC
Q psy10250 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEFIDLTTLS 140 (387)
Q Consensus 61 ~KvIlEt~~L~~~e~i~~a~~~a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ID~T~L~ 140 (387)
.++|+-.-+-+-......+++.+.+.|+|++- --+|++.. ++. .. +++.. + .-+.++-..+.|...
T Consensus 50 ~~i~~DlK~~DIg~tv~~~~~~~~~~gad~~T-vh~~~G~~-~l~---~~-~~~~~----~----~~~~~~~v~~lss~~ 115 (216)
T cd04725 50 FLVFLDLKLGDIPNTVAAAAEALLGLGADAVT-VHPYGGSD-MLK---AA-LEAAE----E----KGKGLFAVTVLSSPG 115 (216)
T ss_pred CcEEEEeecCchHHHHHHHHHHHHhcCCCEEE-ECCcCCHH-HHH---HH-HHHHh----c----cCCeEEEEEcCCCCC
Confidence 56777765443344455667777889999984 44453211 111 00 00000 0 001233444444322
Q ss_pred CC--------CCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEecCCC
Q psy10250 141 GD--------DTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFP 212 (387)
Q Consensus 141 ~~--------~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP 212 (387)
.. ...+-+.++.+.|. +.+..++.+++...+..++... .+..+-+--|+.+
T Consensus 116 ~~~~q~~~~~~~~~~~~~~~~~a~----------------~~g~~G~V~~~~~~~~i~~~~~-----~~~~~ltPGI~~~ 174 (216)
T cd04725 116 ALDLQEGIPGSLEDLVERLAKLAR----------------EAGVDGVVCGATEPEALRRALG-----PDFLILTPGIGAQ 174 (216)
T ss_pred HHHHHhhhcCCHHHHHHHHHHHHH----------------HHCCCEEEECCcchHHHHHhhC-----CCCeEEcCCcCCC
Confidence 11 22333444555554 5677888889999888866553 2344434335666
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHH
Q psy10250 213 SGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELF 254 (387)
Q Consensus 213 ~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~ 254 (387)
.+.. -.-+....+++++.|++- +++-++-+.+.+.....
T Consensus 175 ~~~~-dq~r~~~~~~a~~~g~~~--ivvGR~I~~a~~p~~~~ 213 (216)
T cd04725 175 GSGD-DQKRGGTPEDAIRAGADY--IVVGRPITQAADPVAAA 213 (216)
T ss_pred CCcc-ccccccCHHHHHHcCCcE--EEEChhhccCCCHHHHH
Confidence 5544 444455778889999765 35666666666654433
No 412
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=65.50 E-value=40 Score=34.61 Aligned_cols=79 Identities=14% Similarity=0.118 Sum_probs=55.6
Q ss_pred HHHHHHHHcCCCEEEcCC---CCC------C--------CCCChh-hhHhHHHHHHHHHHHcCC--CceEeEec------
Q psy10250 287 CASMTAMFAGSDFIKTST---GKE------K--------TNATIP-AGIIMCSAIKHFHKLSGK--KIGLKPAG------ 340 (387)
Q Consensus 287 ~a~~ia~~aGaDfVKTST---Gf~------~--------~gat~~-~~~~m~~~v~~~~~~~~~--~~gIKasG------ 340 (387)
+|++.|.+||.|.|.--- ||- + .|-+++ -.+..++-|+.+++.++. .+++|.+.
T Consensus 154 ~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~ 233 (382)
T cd02931 154 ESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKD 233 (382)
T ss_pred HHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccc
Confidence 478899999999987654 761 1 244554 455566777778888876 59999983
Q ss_pred -------------cCCCHHHHHHHHHHHHHhcCCCccCC
Q psy10250 341 -------------GISTFEDSVRWIYLVLIMLGPDWLNK 366 (387)
Q Consensus 341 -------------GIrt~~~a~~~i~l~~~~~Ga~w~~~ 366 (387)
|--|++++..++.+.+ .+|.||++-
T Consensus 234 ~~~~~~~~~~~~~~g~~~e~~~~~~~~l~-~~gvD~l~v 271 (382)
T cd02931 234 LRQGALPGEEFQEKGRDLEEGLKAAKILE-EAGYDALDV 271 (382)
T ss_pred cccccccccccccCCCCHHHHHHHHHHHH-HhCCCEEEe
Confidence 1247788888887664 468988843
No 413
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=65.49 E-value=45 Score=33.77 Aligned_cols=82 Identities=12% Similarity=0.095 Sum_probs=52.4
Q ss_pred HHHHHHHcCCCeeeeecchhHHh-----------cC--------ChhHHHHHHHHHHHHcc----cCccEEEEEecc---
Q psy10250 15 EIELLAKQKVDEVDIVIQRSLVL-----------NN--------QWPELFSEVKQMKEKCE----EKIHMKTILAVG--- 68 (387)
Q Consensus 15 E~~~a~~~GA~EiD~Vin~~~lk-----------~g--------~~~~v~~ei~~v~~~~~----~~~~~KvIlEt~--- 68 (387)
-|+.|.+.|.|-||+=.--|+|. .. +...+.+=+.+|+++++ .+.++++=+-..
T Consensus 149 aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~ 228 (353)
T cd04735 149 ATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPE 228 (353)
T ss_pred HHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECccccc
Confidence 36778889999999865322221 11 22445556677777776 344455544321
Q ss_pred --CCCCHHHHHHHHHHHHHcCCCEEecCCCC
Q psy10250 69 --ELKTSENIYYASMTAMFAGSDFIKTSTGK 97 (387)
Q Consensus 69 --~L~~~e~i~~a~~~a~~ag~dfvKTSTG~ 97 (387)
=+ +.++-...++...++|+|||-.|.|.
T Consensus 229 ~~g~-~~ee~~~i~~~L~~~GvD~I~Vs~g~ 258 (353)
T cd04735 229 EPGI-RMEDTLALVDKLADKGLDYLHISLWD 258 (353)
T ss_pred CCCC-CHHHHHHHHHHHHHcCCCEEEeccCc
Confidence 12 45666778888899999999998874
No 414
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=65.25 E-value=1.1e+02 Score=31.18 Aligned_cols=135 Identities=16% Similarity=0.125 Sum_probs=68.7
Q ss_pred HHHHHHHHcCCCEEecCCCCCCCCCCCcccccchhccccchh--------hhhhHHHHHHhhcccccc--------cCCC
Q psy10250 78 YASMTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSR--------LKNKKSLLLKIIEFIDLT--------TLSG 141 (387)
Q Consensus 78 ~a~~~a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~ID~T--------~L~~ 141 (387)
.|++.|.+||.|.|-=.-+.+ + +.-||.....|+ +|+..-.+++++.-|-.. -++|
T Consensus 163 ~AA~rA~~AGfDGVEIh~ahG-------y-Ll~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~ 234 (362)
T PRK10605 163 QAIANAREAGFDLVELHSAHG-------Y-LLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISP 234 (362)
T ss_pred HHHHHHHHcCCCEEEEccccc-------c-hHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 577889999999988654432 1 222466666665 344444444444332221 1222
Q ss_pred ---------CCCHHH-HHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEEC------CccHHHHHHHhhhcCCCCCceEE
Q psy10250 142 ---------DDTEAV-VETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVY------PARVVDVIKVLDRENARDDVKVA 205 (387)
Q Consensus 142 ---------~~T~~~-i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~------P~~v~~a~~~L~~~~~~~~v~v~ 205 (387)
..+.+| ...+|+.... . .+.+-.|... |++...++ .++.. .+++|.
T Consensus 235 ~~~~~~~~~G~~~~e~~~~~~~~L~~---------~-----giD~i~vs~~~~~~~~~~~~~~~~-~ik~~---~~~pv~ 296 (362)
T PRK10605 235 LGTFNNVDNGPNEEADALYLIEQLGK---------R-----GIAYLHMSEPDWAGGEPYSDAFRE-KVRAR---FHGVII 296 (362)
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHH---------c-----CCCEEEeccccccCCccccHHHHH-HHHHH---CCCCEE
Confidence 245555 4555555431 0 1122222211 23344433 34431 456676
Q ss_pred EEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeee-cCchhhhcCCh
Q psy10250 206 SVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIV-IQRSLVLNNQW 250 (387)
Q Consensus 206 tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~V-in~~~lk~g~~ 250 (387)
++ .+| + ..+++++++.|. .|+| +=+..+.+-+|
T Consensus 297 ~~-G~~-----~----~~~ae~~i~~G~--~D~V~~gR~~iadPd~ 330 (362)
T PRK10605 297 GA-GAY-----T----AEKAETLIGKGL--IDAVAFGRDYIANPDL 330 (362)
T ss_pred Ee-CCC-----C----HHHHHHHHHcCC--CCEEEECHHhhhCccH
Confidence 66 232 2 567999999985 5666 44555555444
No 415
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=65.08 E-value=71 Score=34.34 Aligned_cols=141 Identities=11% Similarity=-0.008 Sum_probs=84.2
Q ss_pred HHHHHHHHC----CCCeeeeecCchhhh-----cCChhHHHHHHHHHHHHhCC-Cc-ceEEEEeeccCCChHHHHHHHHH
Q psy10250 223 HEIELLAKQ----KVDEVDIVIQRSLVL-----NNQWPELFSEVKQMKEKCGE-KI-HMKTILAVGELKTSENIYCASMT 291 (387)
Q Consensus 223 ~Ea~~Ai~~----GAdEID~Vin~~~lk-----~g~~~~v~~Ei~~v~~~~~~-~~-~lKvIlEt~~L~t~e~i~~a~~i 291 (387)
..++.|++. |++.|-+++..+-+. ....+++.+.+...++.+++ +. .+-+-.|...-.+.+-..+.++.
T Consensus 168 ~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~ 247 (503)
T PLN03228 168 RDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGE 247 (503)
T ss_pred hhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHH
Confidence 355555555 778899887765433 34678888888888877754 22 24445566555455667788899
Q ss_pred HHHcCCCEEE--cCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCC-----HHHHHHHHHHHHHhcCCCcc
Q psy10250 292 AMFAGSDFIK--TSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGIST-----FEDSVRWIYLVLIMLGPDWL 364 (387)
Q Consensus 292 a~~aGaDfVK--TSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt-----~~~a~~~i~l~~~~~Ga~w~ 364 (387)
+.++|+|-|- -.+| .++|..+..++..+ ++.+++.-.+.. +++. +..|-.+..+ ++|++|+
T Consensus 248 a~~~Gad~I~l~DTvG----~~tP~~v~~lV~~l---~~~~~~~~~i~I--~~H~HND~GlAvANslaAi---~aGa~~V 315 (503)
T PLN03228 248 AIKAGATSVGIADTVG----INMPHEFGELVTYV---KANTPGIDDIVF--SVHCHNDLGLATANTIAGI---CAGARQV 315 (503)
T ss_pred HHhcCCCEEEEecCCC----CCCHHHHHHHHHHH---HHHhccccCcee--EecccCCcChHHHHHHHHH---HhCCCEE
Confidence 9999999763 4455 36787766554444 444432111111 2222 1222222211 6999988
Q ss_pred CCCcceeeccc
Q psy10250 365 NKDLFRIGASS 375 (387)
Q Consensus 365 ~~~~~RIGtSs 375 (387)
+....=||-.+
T Consensus 316 d~Tv~GiGERa 326 (503)
T PLN03228 316 EVTINGIGERS 326 (503)
T ss_pred EEecccccccc
Confidence 77766677654
No 416
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=65.04 E-value=1.6e+02 Score=29.70 Aligned_cols=47 Identities=21% Similarity=0.183 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHh
Q psy10250 216 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKC 264 (387)
Q Consensus 216 ~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~ 264 (387)
.+.+.-+.+++.+.+.|++++.++- |.-..-.++++.+=++.+++..
T Consensus 79 l~~eeI~~~a~~~~~~G~~~v~l~~--G~~p~~~~~~~~e~i~~Ik~~~ 125 (351)
T TIGR03700 79 MSLEEIVARVKEAYAPGATEVHIVG--GLHPNLPFEWYLDMIRTLKEAY 125 (351)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEec--CCCCCCCHHHHHHHHHHHHHHC
Confidence 4678888899999999999999982 1111223556666666665543
No 417
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=64.87 E-value=95 Score=29.97 Aligned_cols=77 Identities=19% Similarity=0.201 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHcccCccEEEEEeccCCCCHHHHHHHHHHHHHcC
Q psy10250 8 LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGELKTSENIYYASMTAMFAG 87 (387)
Q Consensus 8 ~~~~K~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~~~e~i~~a~~~a~~ag 87 (387)
+.+--+.|++++.+.|+.++=++.--+.....+...+.++|..+ ... ..+++.+-++.+ ++|.+. ...++|
T Consensus 63 ~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~---~~~-~~i~~~~~~g~~-~~e~l~----~Lk~aG 133 (296)
T TIGR00433 63 KVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQI---VEE-MGLKTCATLGLL-DPEQAK----RLKDAG 133 (296)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHHHH---HHh-CCCeEEecCCCC-CHHHHH----HHHHcC
Confidence 34555778888888999987666422222221222333444433 322 236778888866 655443 457889
Q ss_pred CCEEec
Q psy10250 88 SDFIKT 93 (387)
Q Consensus 88 ~dfvKT 93 (387)
+|.|--
T Consensus 134 ~~~v~i 139 (296)
T TIGR00433 134 LDYYNH 139 (296)
T ss_pred CCEEEE
Confidence 998753
No 418
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=64.80 E-value=15 Score=37.27 Aligned_cols=86 Identities=19% Similarity=0.198 Sum_probs=60.0
Q ss_pred HHHHHHHCCCCeeeeecCchhhhcCChhHHHH--HHHHHHHHhCCCcceE--------EEEeeccCCChHHHHHHHHHHH
Q psy10250 224 EIELLAKQKVDEVDIVIQRSLVLNNQWPELFS--EVKQMKEKCGEKIHMK--------TILAVGELKTSENIYCASMTAM 293 (387)
Q Consensus 224 Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~--Ei~~v~~~~~~~~~lK--------vIlEt~~L~t~e~i~~a~~ia~ 293 (387)
++..+-+.||+-.-=|+|...-++-.|+.-+. -+++++++.+=++++- =++||+-. +.+.||++...
T Consensus 271 Qa~l~~kAGanvFGPVvNtntS~t~~WNlaRaVTf~Ka~veas~iP~HvnmGMGVGGiPm~eTpP~---DavsRaSkAmv 347 (466)
T PF09505_consen 271 QAPLAEKAGANVFGPVVNTNTSKTSPWNLARAVTFIKAAVEASPIPCHVNMGMGVGGIPMLETPPI---DAVSRASKAMV 347 (466)
T ss_pred ccchHHhcCcceecceecCCCccccchHHHHHHHHHHHHHhcCCCCcccccCcCcCCcccccCCCc---HHHHHHHHHHH
Confidence 34445568999999999999888888877663 6777777653112221 27899977 35778888655
Q ss_pred H-cCCCEEEcCCCCCCCCCCh
Q psy10250 294 F-AGSDFIKTSTGKEKTNATI 313 (387)
Q Consensus 294 ~-aGaDfVKTSTGf~~~gat~ 313 (387)
+ +|+|-|.-.-|- +.|..+
T Consensus 348 Ei~~vDGi~iGvGD-p~gM~i 367 (466)
T PF09505_consen 348 EIAGVDGIAIGVGD-PMGMPI 367 (466)
T ss_pred HHhcCCceeeccCC-cccChh
Confidence 5 799999887773 444433
No 419
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=64.80 E-value=31 Score=36.16 Aligned_cols=68 Identities=22% Similarity=0.220 Sum_probs=43.3
Q ss_pred HHHHHcC-CCEEEcCCCCCCCCCChh-hhHhHHHHHHHHHHHc------CCCceEeEeccCCCHHHHHHHHHHHHHhcCC
Q psy10250 290 MTAMFAG-SDFIKTSTGKEKTNATIP-AGIIMCSAIKHFHKLS------GKKIGLKPAGGISTFEDSVRWIYLVLIMLGP 361 (387)
Q Consensus 290 ~ia~~aG-aDfVKTSTGf~~~gat~~-~~~~m~~~v~~~~~~~------~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga 361 (387)
+.+.+.| +|.|-... ..+|-|-. ....++..|..+++.+ +.++.|=++|||-|.+++...+ .+|+
T Consensus 170 ~~A~~~g~aD~Ivvq~--EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~-----alGA 242 (418)
T cd04742 170 ELARRVPVADDITVEA--DSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAF-----ALGA 242 (418)
T ss_pred HHHHhCCCCCEEEEcc--cCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHH-----HcCC
Confidence 6678889 59987653 33221110 0112334455444433 2368899999999999999999 5999
Q ss_pred Ccc
Q psy10250 362 DWL 364 (387)
Q Consensus 362 ~w~ 364 (387)
+.+
T Consensus 243 d~V 245 (418)
T cd04742 243 DFI 245 (418)
T ss_pred cEE
Confidence 754
No 420
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=64.61 E-value=1.7e+02 Score=29.69 Aligned_cols=124 Identities=19% Similarity=0.198 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHHHHHHC----CCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHH
Q psy10250 215 QYLLETRLHEIELLAKQ----KVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASM 290 (387)
Q Consensus 215 ~~~~e~K~~Ea~~Ai~~----GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ 290 (387)
...++.-+.+++..++. |.+--.++|-+..-..| ++++.++...+..+-+-+ .+ +.++- .
T Consensus 100 s~d~~~~i~~A~~l~~l~~~~gi~~~~v~IKIPaT~eG--------i~A~~~L~~~GI~vN~Tl---iF-S~~Qa----~ 163 (317)
T TIGR00874 100 SFDTEATVEKARHLIKLYEDAGVDKKRILIKIASTWEG--------IRAAEELEKEGIHCNLTL---LF-SFVQA----I 163 (317)
T ss_pred ccCHHHHHHHHHHHHHHhHhcCCCCCcEEEEeCCCHHH--------HHHHHHHHHCCCceeeee---ec-CHHHH----H
Confidence 35677788888887665 45544577666543333 455555543333333322 34 44443 4
Q ss_pred HHHHcCCCEEEcCCCCCC------CC-----CChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhc
Q psy10250 291 TAMFAGSDFIKTSTGKEK------TN-----ATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIML 359 (387)
Q Consensus 291 ia~~aGaDfVKTSTGf~~------~g-----at~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~ 359 (387)
.|++||++||----|.-. .| .........+..|..+.+..+.+..|.++ .+|+.+|...+ +
T Consensus 164 aaa~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im~A-SfRn~~qv~~l-------a 235 (317)
T TIGR00874 164 ACAEAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTEVMGA-SFRNKEEILAL-------A 235 (317)
T ss_pred HHHHcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcEEEee-ccCCHHHHHHH-------H
Confidence 577889999865555210 01 11122233345566666677888889875 79999999873 5
Q ss_pred CCC
Q psy10250 360 GPD 362 (387)
Q Consensus 360 Ga~ 362 (387)
|++
T Consensus 236 G~d 238 (317)
T TIGR00874 236 GCD 238 (317)
T ss_pred CCC
Confidence 884
No 421
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=64.41 E-value=30 Score=36.36 Aligned_cols=71 Identities=23% Similarity=0.294 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHcccCccEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE
Q psy10250 12 RLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGELKTSENIYYASMTAMFAGSDFI 91 (387)
Q Consensus 12 K~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~~~e~i~~a~~~a~~ag~dfv 91 (387)
-..+++.+++.|+|-|- ++... |+-..+.+-++.+++...+ +-||.=+ ..|.++ ++.++++|+|||
T Consensus 225 ~~~r~~~L~~aG~d~I~--vd~a~---g~~~~~~~~i~~i~~~~~~---~~vi~G~--v~t~~~----a~~l~~aGad~i 290 (450)
T TIGR01302 225 DKERAEALVKAGVDVIV--IDSSH---GHSIYVIDSIKEIKKTYPD---LDIIAGN--VATAEQ----AKALIDAGADGL 290 (450)
T ss_pred HHHHHHHHHHhCCCEEE--EECCC---CcHhHHHHHHHHHHHhCCC---CCEEEEe--CCCHHH----HHHHHHhCCCEE
Confidence 35678888999998744 45432 6667788888888865432 4566643 336554 446678999999
Q ss_pred ecCCC
Q psy10250 92 KTSTG 96 (387)
Q Consensus 92 KTSTG 96 (387)
|.+-|
T Consensus 291 ~vg~g 295 (450)
T TIGR01302 291 RVGIG 295 (450)
T ss_pred EECCC
Confidence 98644
No 422
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=64.38 E-value=20 Score=34.29 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=41.9
Q ss_pred HHHHHHH-cCCCEEEc--CCCC-CCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCc
Q psy10250 288 ASMTAMF-AGSDFIKT--STGK-EKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 363 (387)
Q Consensus 288 a~~ia~~-aGaDfVKT--STGf-~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w 363 (387)
.++.-.+ .|||.+-- -.|- ...+... +.|+.+.+.+ .+.|=+-|||||.+++..++ .+|++
T Consensus 36 ~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~-------~~I~~i~~~~--~~pi~vGGGIrs~e~v~~~l-----~~Ga~- 100 (234)
T PRK13587 36 SIAYYSQFECVNRIHIVDLIGAKAQHAREF-------DYIKSLRRLT--TKDIEVGGGIRTKSQIMDYF-----AAGIN- 100 (234)
T ss_pred HHHHHHhccCCCEEEEEECcccccCCcchH-------HHHHHHHhhc--CCeEEEcCCcCCHHHHHHHH-----HCCCC-
Confidence 3444445 68886642 1221 1222333 3455555433 36688899999999999999 58984
Q ss_pred cCCCcceeeccc
Q psy10250 364 LNKDLFRIGASS 375 (387)
Q Consensus 364 ~~~~~~RIGtSs 375 (387)
..-|||+.
T Consensus 101 ----kvvigt~a 108 (234)
T PRK13587 101 ----YCIVGTKG 108 (234)
T ss_pred ----EEEECchH
Confidence 33467764
No 423
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=63.72 E-value=13 Score=36.08 Aligned_cols=67 Identities=21% Similarity=0.319 Sum_probs=44.0
Q ss_pred HHHHHcCCCEEEc--CCC-CCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCC
Q psy10250 290 MTAMFAGSDFIKT--STG-KEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNK 366 (387)
Q Consensus 290 ~ia~~aGaDfVKT--STG-f~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~ 366 (387)
+-=.+.||.+++- =+| |.+.+-.. +.|+.+.+.+ .+.|-.-|||||.+++..|+ .+|++
T Consensus 38 ~~~~~~Ga~~lHlVDLdgA~~g~~~n~-------~~i~~i~~~~--~~~vQvGGGIRs~~~v~~ll-----~~G~~---- 99 (241)
T COG0106 38 KKWSDQGAEWLHLVDLDGAKAGGPRNL-------EAIKEILEAT--DVPVQVGGGIRSLEDVEALL-----DAGVA---- 99 (241)
T ss_pred HHHHHcCCcEEEEeeccccccCCcccH-------HHHHHHHHhC--CCCEEeeCCcCCHHHHHHHH-----HCCCC----
Confidence 3345579988875 234 32333333 3556665554 45677889999999999999 48984
Q ss_pred Ccceeeccc
Q psy10250 367 DLFRIGASS 375 (387)
Q Consensus 367 ~~~RIGtSs 375 (387)
+.-|||..
T Consensus 100 -rViiGt~a 107 (241)
T COG0106 100 -RVIIGTAA 107 (241)
T ss_pred -EEEEecce
Confidence 34478864
No 424
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=63.68 E-value=1.7e+02 Score=34.76 Aligned_cols=145 Identities=16% Similarity=0.088 Sum_probs=89.8
Q ss_pred CCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEecCCC------CC-C
Q psy10250 143 DTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFP------SG-Q 215 (387)
Q Consensus 143 ~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP------~G-~ 215 (387)
-..+-|+.+|+++.. +...+--|+=..+|++..+...+-.. ..+..+-.. +.|= .. .
T Consensus 622 ypd~vv~~f~~~~~~--------------~GidifrifD~lN~~~n~~~~~~~~~-~~g~~~~~~-i~yt~~~~d~~~~~ 685 (1143)
T TIGR01235 622 YPDNVVKYFVKQAAQ--------------GGIDIFRVFDSLNWVENMRVGMDAVA-EAGKVVEAA-ICYTGDILDPARPK 685 (1143)
T ss_pred CCHHHHHHHHHHHHH--------------cCCCEEEECccCcCHHHHHHHHHHHH-HcCCEEEEE-EEEeccCCCcCCCC
Confidence 456778888888862 14556666667788877665553211 134455555 4663 22 3
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHc
Q psy10250 216 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFA 295 (387)
Q Consensus 216 ~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~a 295 (387)
++.+.=+.-++++.+.||+.|-+-=-.|.+ ....+++=++++++.. .+-|+...=+|.-.-...+..|+++
T Consensus 686 ~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll---~P~~~~~Lv~~lk~~~------~~pi~~H~Hdt~Gla~an~laA~ea 756 (1143)
T TIGR01235 686 YDLKYYTNLAVELEKAGAHILGIKDMAGLL---KPAAAKLLIKALREKT------DLPIHFHTHDTSGIAVASMLAAVEA 756 (1143)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCcCCc---CHHHHHHHHHHHHHhc------CCeEEEEECCCCCcHHHHHHHHHHh
Confidence 457777778899999999988554223433 3677777788887654 2334544443433333456678999
Q ss_pred CCCEEEcCCCCCCCCCC
Q psy10250 296 GSDFIKTSTGKEKTNAT 312 (387)
Q Consensus 296 GaDfVKTSTGf~~~gat 312 (387)
|+|.|-||.+=-.+++.
T Consensus 757 Gad~vD~ai~gl~G~ts 773 (1143)
T TIGR01235 757 GVDVVDVAVDSMSGLTS 773 (1143)
T ss_pred CCCEEEecchhhcCCCC
Confidence 99999998742234444
No 425
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=63.65 E-value=1.3e+02 Score=31.95 Aligned_cols=132 Identities=15% Similarity=0.150 Sum_probs=71.3
Q ss_pred HHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEee--------cc----CC----ChHHHHH
Q psy10250 224 EIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAV--------GE----LK----TSENIYC 287 (387)
Q Consensus 224 Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt--------~~----L~----t~e~i~~ 287 (387)
.++.+++.|++-|-+ +.|+-+.+.+.+.++++++.|++ .-+++||-. +. |. ...+.++
T Consensus 312 ~l~~~l~~Gv~~vql-----R~k~~~~~~~~~~a~~l~~~~~~-~~~~liind~~~lA~~~~adGvHl~~~d~~~~~~r~ 385 (502)
T PLN02898 312 AVRAAIEGGATIVQL-----REKEAETREFIEEAKACLAICRS-YGVPLLINDRVDVALACDADGVHLGQSDMPVRLARS 385 (502)
T ss_pred HHHHHHHcCCCEEEE-----ccCCCCHHHHHHHHHHHHHHHHH-hCCEEEEcChHHHHHhcCCCEEEeChHhcCHHHHHH
Confidence 466788888644322 13444556777777777777754 235566622 00 11 0111211
Q ss_pred ----------------HHHHHHHcCCCEEEcCCCCCC---CCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHH
Q psy10250 288 ----------------ASMTAMFAGSDFIKTSTGKEK---TNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDS 348 (387)
Q Consensus 288 ----------------a~~ia~~aGaDfVKTSTGf~~---~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a 348 (387)
-.+.|.+.|+|||+-|.=|.. .+..+- -.+.++.+.+. ..+.|=+-|||. .+.+
T Consensus 386 ~~~~~~~iG~S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~----g~~~~~~~~~~--~~~Pv~aiGGI~-~~~~ 458 (502)
T PLN02898 386 LLGPGKIIGVSCKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTI----GLDGLREVCEA--SKLPVVAIGGIS-ASNA 458 (502)
T ss_pred hcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCC----CHHHHHHHHHc--CCCCEEEECCCC-HHHH
Confidence 124466789999985443311 111110 01334444333 357788899995 8888
Q ss_pred HHHHHHHHHhcCCCccCCCcceeeccchH
Q psy10250 349 VRWIYLVLIMLGPDWLNKDLFRIGASSLL 377 (387)
Q Consensus 349 ~~~i~l~~~~~Ga~w~~~~~~RIGtSs~~ 377 (387)
.+++ .+|++ +..-|+.++.+
T Consensus 459 ~~~~-----~~G~~----~~~gvav~~~i 478 (502)
T PLN02898 459 ASVM-----ESGAP----NLKGVAVVSAL 478 (502)
T ss_pred HHHH-----HcCCC----cCceEEEEeHH
Confidence 8888 58872 11266665544
No 426
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=63.57 E-value=17 Score=37.36 Aligned_cols=90 Identities=22% Similarity=0.269 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCC--CCC--CCCCChhhhHhHHHHHHHH
Q psy10250 251 PELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTST--GKE--KTNATIPAGIIMCSAIKHF 326 (387)
Q Consensus 251 ~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTST--Gf~--~~gat~~~~~~m~~~v~~~ 326 (387)
--+.+++.-+++....+..+| +-+ +.+.+ .-+.+.|+|.|--|- |.. .+.+|+ +.+..+
T Consensus 204 ~i~ked~~~i~~~~~~~lv~k-----GV~-~~~D~----~~a~~tg~~~I~vsnhggrqlD~g~st~-------~~L~ei 266 (360)
T COG1304 204 VISKEDGAGISKEWAGPLVLK-----GIL-APEDA----AGAGGTGADGIEVSNHGGRQLDWGISTA-------DSLPEI 266 (360)
T ss_pred cccHHHHhHHHHhcCCcHHHh-----CCC-CHHHH----HhhccCCceEEEEEcCCCccccCCCChH-------HHHHHH
Confidence 344567777777655433333 444 43444 335677888887765 321 123455 466777
Q ss_pred HHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 327 HKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 327 ~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
++.+++++.|=++||||+..|..+.+ .+||+
T Consensus 267 ~~av~~~~~vi~dGGiR~G~Dv~KAl-----ALGA~ 297 (360)
T COG1304 267 VEAVGDRIEVIADGGIRSGLDVAKAL-----ALGAD 297 (360)
T ss_pred HHHhCCCeEEEecCCCCCHHHHHHHH-----HhCCc
Confidence 88889999999999999999999999 48985
No 427
>PRK13753 dihydropteroate synthase; Provisional
Probab=63.49 E-value=51 Score=32.69 Aligned_cols=89 Identities=11% Similarity=0.046 Sum_probs=52.8
Q ss_pred CCCCCCC--CHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHH---hCCCcceEEEEeeccCCChHH
Q psy10250 210 GFPSGQY--LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEK---CGEKIHMKTILAVGELKTSEN 284 (387)
Q Consensus 210 gFP~G~~--~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~---~~~~~~lKvIlEt~~L~t~e~ 284 (387)
+|=.|.. +.+.-+..+++.+++|||=||+----+.=-. +.-..++|+.++... ... ....+=+.| + ..+
T Consensus 14 SFsDGg~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga-~~vs~eeE~~Rv~pvI~~l~~-~~~~ISIDT--~-~~~- 87 (279)
T PRK13753 14 SFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDA-RPVSPADEIRRIAPLLDALSD-QMHRVSIDS--F-QPE- 87 (279)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCC-CcCCHHHHHHHHHHHHHHHHh-CCCcEEEEC--C-CHH-
Confidence 4555543 4677888899999999999998754332111 223345666644333 222 112334444 3 223
Q ss_pred HHHHHHHHHHcCCCEEEcCCCCC
Q psy10250 285 IYCASMTAMFAGSDFIKTSTGKE 307 (387)
Q Consensus 285 i~~a~~ia~~aGaDfVKTSTGf~ 307 (387)
..+.|.++|||+|.-=+|+.
T Consensus 88 ---va~~al~aGadiINDVsg~~ 107 (279)
T PRK13753 88 ---TQRYALKRGVGYLNDIQGFP 107 (279)
T ss_pred ---HHHHHHHcCCCEEEeCCCCC
Confidence 34567899999999878873
No 428
>PF09043 Lys-AminoMut_A: D-Lysine 5,6-aminomutase alpha subunit; InterPro: IPR015130 This domain is found in proteins involved in the 1,2 rearrangement of the terminal amino group of DL-lysine and of L-beta-lysine, using adenosylcobalamin (AdoCbl) and pyridoxal-5'-phosphate as cofactors. The structure is predominantly a PLP-binding TIM barrel domain, with several additional alpha-helices and beta-strands at the N and C termini. These helices and strands form an intertwined accessory clamp structure that wraps around the sides of the TIM barrel and extends up toward the Ado ligand of the Cbl cofactor, providing most of the interactions observed between the protein and the Ado ligand of the Cbl, suggesting that its role is mainly in stabilising AdoCbl in the precatalytic resting state. ; PDB: 3KP1_A 3KOW_A 3KOZ_A 3KOY_B 3KOX_A 3KP0_C 1XRS_A.
Probab=63.45 E-value=24 Score=37.11 Aligned_cols=80 Identities=29% Similarity=0.267 Sum_probs=52.0
Q ss_pred ceEEEEeeccCCChHHHHHHHHHHHHcCCCEEE-----------------cCCCCCCCCCChhhhHhHHHHHHHHHHHcC
Q psy10250 269 HMKTILAVGELKTSENIYCASMTAMFAGSDFIK-----------------TSTGKEKTNATIPAGIIMCSAIKHFHKLSG 331 (387)
Q Consensus 269 ~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVK-----------------TSTGf~~~gat~~~~~~m~~~v~~~~~~~~ 331 (387)
.+-+|+-|+-+ .|.|.+| +.|...|||-|- |.-|||...+|-+.+++|..++-+..+.+|
T Consensus 148 ~iy~iVAtG~i--yeDi~qa-raAA~~GAD~IaVIRttgQSllDyvp~GaT~eG~GGt~aTqenfR~mRkALD~v~~EvG 224 (509)
T PF09043_consen 148 VIYVIVATGNI--YEDIRQA-RAAARQGADIIAVIRTTGQSLLDYVPEGATTEGFGGTYATQENFRIMRKALDEVEEEVG 224 (509)
T ss_dssp EEEEEE-SS-H--HHHHHHH-HHHHHTT-SEEEE-BSTTGGG-SS-B-S--S--TTSB--BHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEecCch--HHHHHHH-HHHHHcCCCEEEEecccchhhhccccCCCCCCCcCCchhhHHHHHHHHHHHHHHHHHhC
Confidence 57899999988 5778766 778889999663 555677777888999999999888888888
Q ss_pred CCceEeE-eccCCCHHHHHHH
Q psy10250 332 KKIGLKP-AGGISTFEDSVRW 351 (387)
Q Consensus 332 ~~~gIKa-sGGIrt~~~a~~~ 351 (387)
.-+.+-- +-|+-=+|-|.-+
T Consensus 225 RyI~l~nY~SGlcmPEIA~m~ 245 (509)
T PF09043_consen 225 RYIRLHNYCSGLCMPEIAAMG 245 (509)
T ss_dssp S--EEEEE--STTHHHHHHHH
T ss_pred CeeeeeccccccccHHHHHHH
Confidence 8777664 3466666655433
No 429
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=63.27 E-value=1.6e+02 Score=29.15 Aligned_cols=146 Identities=18% Similarity=0.113 Sum_probs=93.3
Q ss_pred CceEEEEecCCCC-CCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccC
Q psy10250 201 DVKVASVAAGFPS-GQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGEL 279 (387)
Q Consensus 201 ~v~v~tVvigFP~-G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L 279 (387)
++-++.+ .=|=. |.-..+.=..-+++.++.|.+-|=++=.-|..-+=..++-.+=++.+++++++ .+.||.=++-.
T Consensus 7 Gvi~a~v-TPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~g--rvpviaG~g~~ 83 (299)
T COG0329 7 GVIPALV-TPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGG--RVPVIAGVGSN 83 (299)
T ss_pred cceeccc-cCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCC--CCcEEEecCCC
Confidence 4444445 45654 66677777788999999998886555445544444445555556677777765 46799999999
Q ss_pred CChHHHHHHHHHHHHcCCCEEEcCCCCCCCCC---ChhhhHhH----------------------HHHHHHHHHHcCCCc
Q psy10250 280 KTSENIYCASMTAMFAGSDFIKTSTGKEKTNA---TIPAGIIM----------------------CSAIKHFHKLSGKKI 334 (387)
Q Consensus 280 ~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~ga---t~~~~~~m----------------------~~~v~~~~~~~~~~~ 334 (387)
+|.| -.+.++.|.+.|+|-|=-.|=|...+. -.++.+.+ .+.++.+.+ .++=+
T Consensus 84 ~t~e-ai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~-~~niv 161 (299)
T COG0329 84 STAE-AIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAE-HPNIV 161 (299)
T ss_pred cHHH-HHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc-CCCEE
Confidence 7744 557889999999997665543321110 01111111 234444545 57789
Q ss_pred eEeEeccCCCHHHHHHHHH
Q psy10250 335 GLKPAGGISTFEDSVRWIY 353 (387)
Q Consensus 335 gIKasGGIrt~~~a~~~i~ 353 (387)
|||-++| +.+....++.
T Consensus 162 giKd~~g--d~~~~~~~~~ 178 (299)
T COG0329 162 GVKDSSG--DLDRLEEIIA 178 (299)
T ss_pred EEEeCCc--CHHHHHHHHH
Confidence 9999988 6766666654
No 430
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=63.26 E-value=1.9e+02 Score=29.86 Aligned_cols=137 Identities=15% Similarity=0.118 Sum_probs=74.6
Q ss_pred CCCCCC--HHHHHHHHHHHHHCCCCeeeeec----CchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeecc-------
Q psy10250 212 PSGQYL--LETRLHEIELLAKQKVDEVDIVI----QRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGE------- 278 (387)
Q Consensus 212 P~G~~~--~e~K~~Ea~~Ai~~GAdEID~Vi----n~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~------- 278 (387)
|+|..+ ...-...++.+.+.|++-|.+-- +++. ....-...+.++++++.. .-|+|..-+.-
T Consensus 23 ~~g~~~~~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~----~~~e~~~~~~~lk~~L~~-~GL~v~~v~~nl~~~~~~ 97 (382)
T TIGR02631 23 PFGDATRTALDPVEAVHKLAELGAYGVTFHDDDLIPFGA----PPQERDQIVRRFKKALDE-TGLKVPMVTTNLFSHPVF 97 (382)
T ss_pred CCCCCCCCCcCHHHHHHHHHHhCCCEEEecccccCCCCC----ChhHHHHHHHHHHHHHHH-hCCeEEEeeccccCCccc
Confidence 555542 23344566778889999998752 2211 111112224445544433 23554433321
Q ss_pred ----CCC-hHH--------HHHHHHHHHHcCCCEEEcCCCCCCCCCC----h-hhhHhHHHHHHHHHHHcC-----CCce
Q psy10250 279 ----LKT-SEN--------IYCASMTAMFAGSDFIKTSTGKEKTNAT----I-PAGIIMCSAIKHFHKLSG-----KKIG 335 (387)
Q Consensus 279 ----L~t-~e~--------i~~a~~ia~~aGaDfVKTSTGf~~~gat----~-~~~~~m~~~v~~~~~~~~-----~~~g 335 (387)
|.+ +++ ..++.++|.+.|+..|..-.|+.+...+ . +....+.+.++.+.+... -++.
T Consensus 98 ~~g~las~d~~vR~~ai~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~GV~la 177 (382)
T TIGR02631 98 KDGGFTSNDRSVRRYALRKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMREALNLLAAYAEDQGYGLRFA 177 (382)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 212 232 3345678999999999888887543222 1 233445566666554432 2455
Q ss_pred EeEec-----c--CCCHHHHHHHHH
Q psy10250 336 LKPAG-----G--ISTFEDSVRWIY 353 (387)
Q Consensus 336 IKasG-----G--Irt~~~a~~~i~ 353 (387)
|-+-- + +.|..+++.|+.
T Consensus 178 LEp~p~~~~~~~ll~T~~~al~li~ 202 (382)
T TIGR02631 178 LEPKPNEPRGDILLPTVGHALAFIE 202 (382)
T ss_pred EccCCCCCCcceecCCHHHHHHHHH
Confidence 54432 2 688999999996
No 431
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=62.89 E-value=67 Score=31.22 Aligned_cols=87 Identities=18% Similarity=0.226 Sum_probs=51.1
Q ss_pred CCCCCC--CCHHHHHHHHHHHHHCCCCeeeeec---CchhhhcCChhHHHHHHHHHH---HHhCCCcceEEEEeeccCCC
Q psy10250 210 GFPSGQ--YLLETRLHEIELLAKQKVDEVDIVI---QRSLVLNNQWPELFSEVKQMK---EKCGEKIHMKTILAVGELKT 281 (387)
Q Consensus 210 gFP~G~--~~~e~K~~Ea~~Ai~~GAdEID~Vi---n~~~lk~g~~~~v~~Ei~~v~---~~~~~~~~lKvIlEt~~L~t 281 (387)
+|=.|. ...+.-+..+++.++.||+=||+-. |.+. +.-...+|+.++. +.......+-+-|.|. .
T Consensus 13 SF~dg~~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~----~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~---~ 85 (257)
T cd00739 13 SFSDGGRFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGA----DPVSVEEELERVIPVLEALRGELDVLISVDTF---R 85 (257)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCC----CCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCC---C
Confidence 455544 3457778889999999999999953 2221 1223345555543 3232211223455553 2
Q ss_pred hHHHHHHHHHHHHcCCCEEEcCCCCC
Q psy10250 282 SENIYCASMTAMFAGSDFIKTSTGKE 307 (387)
Q Consensus 282 ~e~i~~a~~ia~~aGaDfVKTSTGf~ 307 (387)
.+ +.+.|+++|+|.|..-+|+.
T Consensus 86 ~~----v~e~al~~G~~iINdisg~~ 107 (257)
T cd00739 86 AE----VARAALEAGADIINDVSGGS 107 (257)
T ss_pred HH----HHHHHHHhCCCEEEeCCCCC
Confidence 23 34556677999999888873
No 432
>PLN02411 12-oxophytodienoate reductase
Probab=62.75 E-value=1.6e+02 Score=30.40 Aligned_cols=128 Identities=9% Similarity=0.058 Sum_probs=67.8
Q ss_pred HHHHHHHHCCCCeeeeecCchhhh----cC---------------ChhHHHHHHHHHHHHhCCC-cceEEEEeecc----
Q psy10250 223 HEIELLAKQKVDEVDIVIQRSLVL----NN---------------QWPELFSEVKQMKEKCGEK-IHMKTILAVGE---- 278 (387)
Q Consensus 223 ~Ea~~Ai~~GAdEID~Vin~~~lk----~g---------------~~~~v~~Ei~~v~~~~~~~-~~lKvIlEt~~---- 278 (387)
.-|+.|.+.|.|-|++=---|+|. |. ....+.+=|++|+++|++. +-+|+=-+...
T Consensus 169 ~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~ 248 (391)
T PLN02411 169 QAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLDAT 248 (391)
T ss_pred HHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccCCC
Confidence 347788999999999865444433 32 1123445567888888753 22333212111
Q ss_pred -CCChHHHHHHHHHHHH----c--CCCEEEcCCCCCC-CCCCh--hhh-H-hHHHHHHHHHHHcCCCceEeEeccCCCHH
Q psy10250 279 -LKTSENIYCASMTAMF----A--GSDFIKTSTGKEK-TNATI--PAG-I-IMCSAIKHFHKLSGKKIGLKPAGGISTFE 346 (387)
Q Consensus 279 -L~t~e~i~~a~~ia~~----a--GaDfVKTSTGf~~-~gat~--~~~-~-~m~~~v~~~~~~~~~~~gIKasGGIrt~~ 346 (387)
-.+.++-...++...+ . |+|||-.|.|... .+.+. ... . .+..-.+.+++.++ +.|=++||| +.+
T Consensus 249 ~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v~--~pvi~~G~i-~~~ 325 (391)
T PLN02411 249 DSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAYQ--GTFMCSGGF-TRE 325 (391)
T ss_pred CCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHcC--CCEEEECCC-CHH
Confidence 1112222233333222 2 5999999998531 11110 000 0 01112344566554 467899999 569
Q ss_pred HHHHHHH
Q psy10250 347 DSVRWIY 353 (387)
Q Consensus 347 ~a~~~i~ 353 (387)
+|.+.+.
T Consensus 326 ~a~~~l~ 332 (391)
T PLN02411 326 LGMQAVQ 332 (391)
T ss_pred HHHHHHH
Confidence 9999883
No 433
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=62.68 E-value=43 Score=33.20 Aligned_cols=88 Identities=13% Similarity=0.111 Sum_probs=50.9
Q ss_pred CCCCC--CCHHHHHHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHH---HHcccCccEEEEEeccCCCCHHHH
Q psy10250 2 FPSGQ--YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMK---EKCEEKIHMKTILAVGELKTSENI 76 (387)
Q Consensus 2 FP~G~--~~~~~K~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~---~~~~~~~~~KvIlEt~~L~~~e~i 76 (387)
|-.|. ...+.=+.++++.++.|||=||+=---..--+ +.-..++|++.+. +.......+-+=+.|- ..+
T Consensus 28 Fsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~-~~v~~eeE~~Rv~pvI~~l~~~~~~~ISIDT~---~~~-- 101 (282)
T PRK11613 28 FSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGA-AEVSVEEELDRVIPVVEAIAQRFEVWISVDTS---KPE-- 101 (282)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCC-CCCCHHHHHHHHHHHHHHHHhcCCCeEEEECC---CHH--
Confidence 44444 36788888999999999999998722111111 1222344544433 3222211233456662 333
Q ss_pred HHHHHHHHHcCCCEEecCCCC
Q psy10250 77 YYASMTAMFAGSDFIKTSTGK 97 (387)
Q Consensus 77 ~~a~~~a~~ag~dfvKTSTG~ 97 (387)
..+.|.++|+|+|.--+|+
T Consensus 102 --va~~AL~~GadiINDI~g~ 120 (282)
T PRK11613 102 --VIRESAKAGAHIINDIRSL 120 (282)
T ss_pred --HHHHHHHcCCCEEEECCCC
Confidence 3445677899999988886
No 434
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=62.57 E-value=56 Score=33.45 Aligned_cols=81 Identities=12% Similarity=0.039 Sum_probs=53.5
Q ss_pred HHHHHHHcCCCeeeeecchhHHhcC-----------C--------hhHHHHHHHHHHHHcccC--ccEEEEEe--ccC--
Q psy10250 15 EIELLAKQKVDEVDIVIQRSLVLNN-----------Q--------WPELFSEVKQMKEKCEEK--IHMKTILA--VGE-- 69 (387)
Q Consensus 15 E~~~a~~~GA~EiD~Vin~~~lk~g-----------~--------~~~v~~ei~~v~~~~~~~--~~~KvIlE--t~~-- 69 (387)
-|+.|.+.|.|-|++=.--|+|.+. . ...+.+=+.+|+++++.+ +.+|+--+ ..+
T Consensus 149 AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~ 228 (361)
T cd04747 149 AAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTA 228 (361)
T ss_pred HHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECccccccccc
Confidence 4678888999999987655444321 1 144455567777777643 34455421 111
Q ss_pred ---CCCHHHHHHHHHHHHHcCCCEEecCCC
Q psy10250 70 ---LKTSENIYYASMTAMFAGSDFIKTSTG 96 (387)
Q Consensus 70 ---L~~~e~i~~a~~~a~~ag~dfvKTSTG 96 (387)
+ +.++..+.++.+.++|+|||-.|+|
T Consensus 229 ~~g~-~~~e~~~~~~~l~~~gvd~i~vs~g 257 (361)
T cd04747 229 RLAD-TPDELEALLAPLVDAGVDIFHCSTR 257 (361)
T ss_pred CCCC-CHHHHHHHHHHHHHcCCCEEEecCC
Confidence 3 5667777888888999999999997
No 435
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=62.55 E-value=2.2e+02 Score=30.37 Aligned_cols=134 Identities=14% Similarity=0.112 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCC-CcceEEEEeecc--CCChHHHHHHHHHHH
Q psy10250 217 LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGE-KIHMKTILAVGE--LKTSENIYCASMTAM 293 (387)
Q Consensus 217 ~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~-~~~lKvIlEt~~--L~t~e~i~~a~~ia~ 293 (387)
+-++.-.-++.|++.|+|.|-+....+.+. . +...++.++. +..+-.-+-... -.+.+-..+.++.+.
T Consensus 93 ~dDvv~~fv~~A~~~Gvd~irif~~lnd~~-----n----~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~ 163 (467)
T PRK14041 93 ADDVVELFVKKVAEYGLDIIRIFDALNDIR-----N----LEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELV 163 (467)
T ss_pred cchhhHHHHHHHHHCCcCEEEEEEeCCHHH-----H----HHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 334444457889999999999998776532 2 2222233322 223332232211 114566778888899
Q ss_pred HcCCCE--EEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEe--ccCCCHHHHHHHHHHHHHhcCCCccCCCcc
Q psy10250 294 FAGSDF--IKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPA--GGISTFEDSVRWIYLVLIMLGPDWLNKDLF 369 (387)
Q Consensus 294 ~aGaDf--VKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKas--GGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~ 369 (387)
++|+|- ||=++|. .+|..+..++..+ ++.++-.+++..= -|.-. ..+++-+ ++|++|++....
T Consensus 164 ~~Gad~I~i~Dt~G~----l~P~~v~~Lv~~l---k~~~~vpI~~H~Hnt~GlA~-AN~laAi-----eaGad~vD~sv~ 230 (467)
T PRK14041 164 DMGVDSICIKDMAGL----LTPKRAYELVKAL---KKKFGVPVEVHSHCTTGLAS-LAYLAAV-----EAGADMFDTAIS 230 (467)
T ss_pred HcCCCEEEECCccCC----cCHHHHHHHHHHH---HHhcCCceEEEecCCCCcHH-HHHHHHH-----HhCCCEEEeecc
Confidence 999995 5667775 6787766655444 4445444444431 12222 2222233 699988866655
Q ss_pred eee
Q psy10250 370 RIG 372 (387)
Q Consensus 370 RIG 372 (387)
=+|
T Consensus 231 ~~g 233 (467)
T PRK14041 231 PFS 233 (467)
T ss_pred ccC
Confidence 443
No 436
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=62.51 E-value=61 Score=29.85 Aligned_cols=108 Identities=22% Similarity=0.138 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcC
Q psy10250 217 LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAG 296 (387)
Q Consensus 217 ~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aG 296 (387)
+.+.=..-++.+++.|++-|.+-. |+.++..+.+++++....|.. .. ...| +.++ .+.|.++|
T Consensus 22 ~~~~~~~~~~~~~~~Gv~~vqlr~-----k~~~~~e~~~~~~~~~~~~~~----g~---gtvl-~~d~----~~~A~~~g 84 (187)
T PRK07455 22 DLELGLQMAEAVAAGGMRLIEITW-----NSDQPAELISQLREKLPECII----GT---GTIL-TLED----LEEAIAAG 84 (187)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeC-----CCCCHHHHHHHHHHhCCCcEE----eE---EEEE-cHHH----HHHHHHcC
Confidence 455556678899999999888874 444666777766666543321 10 1123 3333 36688999
Q ss_pred CCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCcc
Q psy10250 297 SDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 364 (387)
Q Consensus 297 aDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~ 364 (387)
||||-++- ++ ++ +...++..+. . +.-| ..|++++.+-. .+|+|++
T Consensus 85 Adgv~~p~-~~-----~~--------~~~~~~~~~~--~-~i~G-~~t~~e~~~A~-----~~Gadyv 129 (187)
T PRK07455 85 AQFCFTPH-VD-----PE--------LIEAAVAQDI--P-IIPG-ALTPTEIVTAW-----QAGASCV 129 (187)
T ss_pred CCEEECCC-CC-----HH--------HHHHHHHcCC--C-EEcC-cCCHHHHHHHH-----HCCCCEE
Confidence 99997433 32 32 1222222222 1 3345 99999998888 4899766
No 437
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=62.50 E-value=31 Score=32.70 Aligned_cols=55 Identities=18% Similarity=0.128 Sum_probs=34.9
Q ss_pred HcCCCEEEcCCCCCC--CCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 294 FAGSDFIKTSTGKEK--TNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 294 ~aGaDfVKTSTGf~~--~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
..|+-+|=|+-.... .|..++ -++.+.+.. .+.|=+||||++.+|+..+. .+|++
T Consensus 152 ~~g~~ii~tdI~~dGt~~G~d~e-------li~~i~~~~--~~pvia~GGi~s~ed~~~l~-----~~Ga~ 208 (221)
T TIGR00734 152 SFDYGLIVLDIHSVGTMKGPNLE-------LLTKTLELS--EHPVMLGGGISGVEDLELLK-----EMGVS 208 (221)
T ss_pred hcCCEEEEEECCccccCCCCCHH-------HHHHHHhhC--CCCEEEeCCCCCHHHHHHHH-----HCCCC
Confidence 345556656554321 234443 344555443 47799999999999999987 47874
No 438
>PLN02321 2-isopropylmalate synthase
Probab=62.22 E-value=2.1e+02 Score=31.78 Aligned_cols=140 Identities=19% Similarity=0.163 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCC----cceEEEEeeccCCChHHHHHHHHH
Q psy10250 216 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEK----IHMKTILAVGELKTSENIYCASMT 291 (387)
Q Consensus 216 ~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~----~~lKvIlEt~~L~t~e~i~~a~~i 291 (387)
.+++.|+.=++...+.|.++|++-.+. .-.+|++. ++.+.+...+. ..+-+|.--+-. ..+.|.++.+.
T Consensus 105 ~s~eeKl~Ia~~L~~lGVd~IEvGfP~--~Sp~D~e~----vr~i~~~~~~~v~~~~~v~~i~a~~ra-~~~dId~A~~a 177 (632)
T PLN02321 105 LTSKEKLDIARQLAKLGVDIIEAGFPI--ASPDDLEA----VKTIAKEVGNEVDEDGYVPVICGLSRC-NKKDIDAAWEA 177 (632)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCcC--CCccHHHH----HHHHHHhcccCCCccccceeeeeehhc-cHHhHHHHHHH
Confidence 579999999999999999999986543 22234444 33333322110 112233333333 34555444432
Q ss_pred HHHcCC----CEEEcCCCCC--CCCCChhhhHhHHHHHHHHHHHcCC-CceEeE-eccCCCHHHHHHHHHHHHHhcCCCc
Q psy10250 292 AMFAGS----DFIKTSTGKE--KTNATIPAGIIMCSAIKHFHKLSGK-KIGLKP-AGGISTFEDSVRWIYLVLIMLGPDW 363 (387)
Q Consensus 292 a~~aGa----DfVKTSTGf~--~~gat~~~~~~m~~~v~~~~~~~~~-~~gIKa-sGGIrt~~~a~~~i~l~~~~~Ga~w 363 (387)
...++. =|++||--+. .-+.|.+.+..|+.+.-.+.+..+. .+.+=+ -+|=-+++.+.+++..+. ++|+++
T Consensus 178 l~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~-~aGa~~ 256 (632)
T PLN02321 178 VKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVI-KAGATT 256 (632)
T ss_pred hcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHH-HcCCCE
Confidence 222221 1444444331 1245666555544433333333332 233322 244455666666665543 357643
No 439
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=62.13 E-value=70 Score=30.56 Aligned_cols=194 Identities=12% Similarity=0.019 Sum_probs=102.5
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCCEEecCCCCCCCCCCCcccccchhccccchhh-hhhHHHHHHhhccc----c-cccCC
Q psy10250 67 VGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRL-KNKKSLLLKIIEFI----D-LTTLS 140 (387)
Q Consensus 67 t~~L~~~e~i~~a~~~a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~I----D-~T~L~ 140 (387)
.|+= +.++..++.+...++ +|.|-=.-=|+.+-+ +.+..|-.. ...+ ...-++++++.+.. . +|.++
T Consensus 12 ~G~p-~~~~~~~~~~~l~~~-ad~iElgip~sdp~a---dG~~i~~~~--~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n 84 (244)
T PRK13125 12 AGYP-NVESFKEFIIGLVEL-VDILELGIPPKYPKY---DGPVIRKSH--RKVKGLDIWPLLEEVRKDVSVPIILMTYLE 84 (244)
T ss_pred CCCC-CHHHHHHHHHHHHhh-CCEEEECCCCCCCCC---CCHHHHHHH--HHHHHcCcHHHHHHHhccCCCCEEEEEecc
Confidence 3543 555555666655566 888774433332211 122221111 1101 00012344444332 2 26678
Q ss_pred CCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEEC--C----ccHHHHHHHhhhcCCCCCceEEEEecCCCCC
Q psy10250 141 GDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVY--P----ARVVDVIKVLDRENARDDVKVASVAAGFPSG 214 (387)
Q Consensus 141 ~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~--P----~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G 214 (387)
|. ..+..++++++. +.|+.+++++ | .......+.++. .++++...+ +
T Consensus 85 ~~--~~~~~~~i~~~~----------------~~Gadgvii~dlp~e~~~~~~~~~~~~~~----~Gl~~~~~v-~---- 137 (244)
T PRK13125 85 DY--VDSLDNFLNMAR----------------DVGADGVLFPDLLIDYPDDLEKYVEIIKN----KGLKPVFFT-S---- 137 (244)
T ss_pred hh--hhCHHHHHHHHH----------------HcCCCEEEECCCCCCcHHHHHHHHHHHHH----cCCCEEEEE-C----
Confidence 73 567888888888 6799999997 2 244444444453 477776664 2
Q ss_pred CCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHH
Q psy10250 215 QYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMF 294 (387)
Q Consensus 215 ~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~ 294 (387)
..+...+.+..++..-.=+=|-+|-+.-. .-...+.+-++.+++..++ ..++++-+-= +.+++. .+.+
T Consensus 138 ---p~T~~e~l~~~~~~~~~~l~msv~~~~g~-~~~~~~~~~i~~lr~~~~~---~~i~v~gGI~-~~e~i~----~~~~ 205 (244)
T PRK13125 138 ---PKFPDLLIHRLSKLSPLFIYYGLRPATGV-PLPVSVERNIKRVRNLVGN---KYLVVGFGLD-SPEDAR----DALS 205 (244)
T ss_pred ---CCCCHHHHHHHHHhCCCEEEEEeCCCCCC-CchHHHHHHHHHHHHhcCC---CCEEEeCCcC-CHHHHH----HHHH
Confidence 11223455666666444444455544321 1224445566666665543 2367777744 667664 3457
Q ss_pred cCCCEEEcCCCC
Q psy10250 295 AGSDFIKTSTGK 306 (387)
Q Consensus 295 aGaDfVKTSTGf 306 (387)
+|||.+=-.|++
T Consensus 206 ~gaD~vvvGSai 217 (244)
T PRK13125 206 AGADGVVVGTAF 217 (244)
T ss_pred cCCCEEEECHHH
Confidence 999988777765
No 440
>PRK15452 putative protease; Provisional
Probab=62.12 E-value=47 Score=35.00 Aligned_cols=133 Identities=12% Similarity=0.085 Sum_probs=78.5
Q ss_pred HHHHHHHHHcCCCeeeeecchhHHh--cCChhHHHHHHHHHHHHcccCccEEEEEeccCCCCHHHHHHHHH---HHHHcC
Q psy10250 13 LHEIELLAKQKVDEVDIVIQRSLVL--NNQWPELFSEVKQMKEKCEEKIHMKTILAVGELKTSENIYYASM---TAMFAG 87 (387)
Q Consensus 13 ~~E~~~a~~~GA~EiD~Vin~~~lk--~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~~~e~i~~a~~---~a~~ag 87 (387)
....+.|++.|||.|=+-..--.++ .++++. +|+++.++.||. .-.||-+-+..+..++++...-+ -..+.|
T Consensus 13 ~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~--edl~eav~~ah~-~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~g 89 (443)
T PRK15452 13 LKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNH--ENLALGINEAHA-LGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMK 89 (443)
T ss_pred HHHHHHHHHCCCCEEEECCCccchhhhccCCCH--HHHHHHHHHHHH-cCCEEEEEecCcCCHHHHHHHHHHHHHHHhCC
Confidence 4567899999999986644322232 345554 788888888875 23688888777766666654443 335778
Q ss_pred CCEEe-cCCCCCC----CCCCCcccccchhccccchhh-hhhHHHHHHhhcccccccCCCCCCHHHHHHHHHHh
Q psy10250 88 SDFIK-TSTGKEK----TNATIPADLTRQFEAVDLSRL-KNKKSLLLKIIEFIDLTTLSGDDTEAVVETLTLKA 155 (387)
Q Consensus 88 ~dfvK-TSTG~~~----~gat~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~ID~T~L~~~~T~~~i~~l~~~A 155 (387)
+|-|= ..-|--. ....++...+ ..+|-- ...+.+++++ =++.-.|.++.|.+||+++.++.
T Consensus 90 vDgvIV~d~G~l~~~ke~~p~l~ih~s-----tqlni~N~~a~~f~~~l--G~~rvvLSrELsl~EI~~i~~~~ 156 (443)
T PRK15452 90 PDALIMSDPGLIMMVREHFPEMPIHLS-----VQANAVNWATVKFWQQM--GLTRVILSRELSLEEIEEIRQQC 156 (443)
T ss_pred CCEEEEcCHHHHHHHHHhCCCCeEEEE-----ecccCCCHHHHHHHHHC--CCcEEEECCcCCHHHHHHHHhhC
Confidence 99543 3333110 0112222222 222221 2222333332 16788899999999999998664
No 441
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=62.06 E-value=13 Score=35.74 Aligned_cols=67 Identities=12% Similarity=0.195 Sum_probs=41.4
Q ss_pred HHHHHHcCCCEEEc--CCC-CCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccC
Q psy10250 289 SMTAMFAGSDFIKT--STG-KEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLN 365 (387)
Q Consensus 289 ~~ia~~aGaDfVKT--STG-f~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~ 365 (387)
++.-.+.|+|.+-- =.| +...+... +.|+.+.+.+ ..|=+-|||||.+++..++ .+|++
T Consensus 36 A~~~~~~ga~~lhivDLd~a~~g~~~n~-------~~i~~i~~~~---~~v~vGGGIrs~e~~~~~l-----~~Ga~--- 97 (241)
T PRK14114 36 VEKLIEEGFTLIHVVDLSKAIENSVENL-------PVLEKLSEFA---EHIQIGGGIRSLDYAEKLR-----KLGYR--- 97 (241)
T ss_pred HHHHHHCCCCEEEEEECCCcccCCcchH-------HHHHHHHhhc---CcEEEecCCCCHHHHHHHH-----HCCCC---
Confidence 34444689986642 222 22222233 3455555544 4688899999999999999 48983
Q ss_pred CCcceeeccc
Q psy10250 366 KDLFRIGASS 375 (387)
Q Consensus 366 ~~~~RIGtSs 375 (387)
..-|||..
T Consensus 98 --rvvigT~a 105 (241)
T PRK14114 98 --RQIVSSKV 105 (241)
T ss_pred --EEEECchh
Confidence 22378754
No 442
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=61.71 E-value=1.6e+02 Score=28.39 Aligned_cols=135 Identities=16% Similarity=0.116 Sum_probs=85.5
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHH
Q psy10250 212 PSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMT 291 (387)
Q Consensus 212 P~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~i 291 (387)
+.|.-..+.=...+++.++.|++-|=+-=..|..-+=.+++-.+=++.+++.+++ .+.||.=++..++ ++-.+.++.
T Consensus 11 ~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~--~~~vi~gv~~~~~-~~~i~~a~~ 87 (281)
T cd00408 11 ADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAG--RVPVIAGVGANST-REAIELARH 87 (281)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCC--CCeEEEecCCccH-HHHHHHHHH
Confidence 5666677777888999999999997555555555444455555555666666653 5789998888855 556678888
Q ss_pred HHHcCCCEEEcCCCCCCCCCChhhhHhH--------------------------HHHHHHHHHHcCCCceEeEeccCCCH
Q psy10250 292 AMFAGSDFIKTSTGKEKTNATIPAGIIM--------------------------CSAIKHFHKLSGKKIGLKPAGGISTF 345 (387)
Q Consensus 292 a~~aGaDfVKTSTGf~~~gat~~~~~~m--------------------------~~~v~~~~~~~~~~~gIKasGGIrt~ 345 (387)
+.++|+|.|=-.+-+... .+.+.+..- .+.++.+.+ .++=+|||-|. .+.
T Consensus 88 a~~~Gad~v~v~pP~y~~-~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~-~~~v~giK~s~--~d~ 163 (281)
T cd00408 88 AEEAGADGVLVVPPYYNK-PSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAE-HPNIVGIKDSS--GDL 163 (281)
T ss_pred HHHcCCCEEEECCCcCCC-CCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhc-CCCEEEEEeCC--CCH
Confidence 999999977665543211 121111111 123333333 46679999987 366
Q ss_pred HHHHHHHH
Q psy10250 346 EDSVRWIY 353 (387)
Q Consensus 346 ~~a~~~i~ 353 (387)
.+..+++.
T Consensus 164 ~~~~~~~~ 171 (281)
T cd00408 164 DRLTRLIA 171 (281)
T ss_pred HHHHHHHH
Confidence 66666664
No 443
>PLN02433 uroporphyrinogen decarboxylase
Probab=61.43 E-value=1.2e+02 Score=30.50 Aligned_cols=46 Identities=9% Similarity=0.006 Sum_probs=34.4
Q ss_pred CChHHHHHHHHHHHHcCCC--EEEcCCCCC-CCCCChhhhHhHHHHHHHH
Q psy10250 280 KTSENIYCASMTAMFAGSD--FIKTSTGKE-KTNATIPAGIIMCSAIKHF 326 (387)
Q Consensus 280 ~t~e~i~~a~~ia~~aGaD--fVKTSTGf~-~~gat~~~~~~m~~~v~~~ 326 (387)
.|.|+|.+.++-+++.+.+ ||= |+|-+ +.++.+|.++.|+++++.+
T Consensus 289 gt~e~i~~~v~~~i~~~~~~g~Il-~~Gc~i~~~tp~eNi~a~v~av~~~ 337 (345)
T PLN02433 289 GSKEAIEKEVRDVVKKAGPQGHIL-NLGHGVLVGTPEENVAHFFDVAREL 337 (345)
T ss_pred CCHHHHHHHHHHHHHHcCCCCeEE-ecCCCCCCCCCHHHHHHHHHHHHHh
Confidence 3778899999888886544 775 45533 4578888999999988875
No 444
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=61.21 E-value=1.5e+02 Score=28.10 Aligned_cols=179 Identities=21% Similarity=0.201 Sum_probs=93.2
Q ss_pred EEEEEeccCCCCHHHHHHHHHHHHHcCCCEEecCCCCCCCCCCCcccccchhccccchhhhhhHHHHHHhhcccccccCC
Q psy10250 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEFIDLTTLS 140 (387)
Q Consensus 61 ~KvIlEt~~L~~~e~i~~a~~~a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ID~T~L~ 140 (387)
+|..|-++.+ ++|+++. .+|+-.|-.|.| ++.. -+-. +..+.++++.++++.- +.
T Consensus 1 Mk~~lDsAd~---~~i~~~~-------------~~~~i~GvTTNP-sll~-k~g~------~~~~~~~~i~~~~~g~-vs 55 (213)
T TIGR00875 1 MKFFLDTANV---EEIKKAA-------------ELGILAGVTTNP-SLIA-KEGR------SFWEVLKEIQEAVEGP-VS 55 (213)
T ss_pred CeEEEcCCCH---HHHHHHH-------------hcCCcceEeCCH-HHHH-hcCC------CHHHHHHHHHHhcCCc-EE
Confidence 4666777644 6777655 345443434444 2222 1111 2334677788877532 33
Q ss_pred CCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEE--CCcc--HHHHHHHhhhcCCCCCceEEEEecCCCCCCC
Q psy10250 141 GDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCV--YPAR--VVDVIKVLDRENARDDVKVASVAAGFPSGQY 216 (387)
Q Consensus 141 ~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV--~P~~--v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~ 216 (387)
-.....+.+.++++|++ +.+ + . -+ ++| |-++ ++.++ .|.. .++++.... -|
T Consensus 56 ~qv~~~~~~~mi~~a~~-----l~~-~---~--~~---i~iKIP~T~~Gl~A~~-~L~~----~Gi~v~~T~-vf----- 110 (213)
T TIGR00875 56 AETISLDAEGMVEEAKE-----LAK-L---A--PN---IVVKIPMTSEGLKAVK-ILKK----EGIKTNVTL-VF----- 110 (213)
T ss_pred EEEeeCCHHHHHHHHHH-----HHH-h---C--CC---eEEEeCCCHHHHHHHH-HHHH----CCCceeEEE-ec-----
Confidence 22334456667777762 111 1 1 12 444 4332 44444 4553 467666552 23
Q ss_pred CHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcC
Q psy10250 217 LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAG 296 (387)
Q Consensus 217 ~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aG 296 (387)
-+.++..|.+.||+-|=.-+|+=.-..++--.+.+++.++.+.-+ ...| ||-.+.- +.+++.+ +..+|
T Consensus 111 ----s~~Qa~~Aa~aGa~yispyvgRi~d~g~dg~~~v~~~~~~~~~~~--~~tk-IlaAS~r-~~~~v~~----~~~~G 178 (213)
T TIGR00875 111 ----SAAQALLAAKAGATYVSPFVGRLDDIGGDGMKLIEEVKTIFENHA--PDTE-VIAASVR-HPRHVLE----AALIG 178 (213)
T ss_pred ----CHHHHHHHHHcCCCEEEeecchHHHcCCCHHHHHHHHHHHHHHcC--CCCE-EEEeccC-CHHHHHH----HHHcC
Confidence 256777888889885444444422222344444455555554322 3577 6666655 5666644 45679
Q ss_pred CCEEE
Q psy10250 297 SDFIK 301 (387)
Q Consensus 297 aDfVK 301 (387)
+|.+-
T Consensus 179 ~d~vT 183 (213)
T TIGR00875 179 ADIAT 183 (213)
T ss_pred CCEEE
Confidence 99994
No 445
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=61.20 E-value=1.2e+02 Score=29.60 Aligned_cols=91 Identities=14% Similarity=0.049 Sum_probs=57.9
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHH
Q psy10250 212 PSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMT 291 (387)
Q Consensus 212 P~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~i 291 (387)
+.|.-..+.=...+++.++.|++-|=+.=..|..-+=..++-.+=++.+++.+.+ .+.||.=++..++ ++..+.++.
T Consensus 12 ~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~--~~~vi~gv~~~s~-~~~i~~a~~ 88 (285)
T TIGR00674 12 EDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNG--RVPVIAGTGSNAT-EEAISLTKF 88 (285)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCC--CCeEEEeCCCccH-HHHHHHHHH
Confidence 4566677777778888888898886443334433322233333334445555543 4678888887754 556677888
Q ss_pred HHHcCCCEEEcCCC
Q psy10250 292 AMFAGSDFIKTSTG 305 (387)
Q Consensus 292 a~~aGaDfVKTSTG 305 (387)
|.++|+|.|=-..=
T Consensus 89 a~~~Gad~v~v~pP 102 (285)
T TIGR00674 89 AEDVGADGFLVVTP 102 (285)
T ss_pred HHHcCCCEEEEcCC
Confidence 89999997765543
No 446
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=61.10 E-value=36 Score=32.53 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=38.9
Q ss_pred HHHHHHHcCCCEEEcCCCCC----CCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 288 ASMTAMFAGSDFIKTSTGKE----KTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 288 a~~ia~~aGaDfVKTSTGf~----~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
.++...+.|++.+- =++.. ..+... +.|+.+++.+ .+.|=+.|||||.+++..++ ..|++
T Consensus 35 ~a~~~~~~G~~~i~-i~dl~~~~~~~~~~~-------~~i~~i~~~~--~ipv~~~GGi~s~~~~~~~l-----~~Ga~ 98 (253)
T PRK02083 35 LAKRYNEEGADELV-FLDITASSEGRDTML-------DVVERVAEQV--FIPLTVGGGIRSVEDARRLL-----RAGAD 98 (253)
T ss_pred HHHHHHHcCCCEEE-EEeCCcccccCcchH-------HHHHHHHHhC--CCCEEeeCCCCCHHHHHHHH-----HcCCC
Confidence 34555688998663 11111 112233 4556665554 47788999999999999999 47874
No 447
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=60.95 E-value=2e+02 Score=29.34 Aligned_cols=231 Identities=13% Similarity=0.068 Sum_probs=136.9
Q ss_pred cEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEecCCCCCCCCCCCcccccchhccccchhhhhhHHHHHHhhcccccccC
Q psy10250 60 HMKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEFIDLTTL 139 (387)
Q Consensus 60 ~~KvIlEt~~L~~~e~i~~a~~~a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ID~T~L 139 (387)
.+=+|-.-|-+.+++++...++...++|+++++. +....-|.++ +| .-+. +....++++...-.....+
T Consensus 93 ~~~~IAGPCsiEs~e~~~~~A~~lk~~ga~~~r~---~~fKpRTsp~--sf--~G~g----~~gL~~L~~~~~~~Gl~v~ 161 (335)
T PRK08673 93 KPVVIAGPCSVESEEQILEIARAVKEAGAQILRG---GAFKPRTSPY--SF--QGLG----EEGLKLLAEAREETGLPIV 161 (335)
T ss_pred ceEEEEecCccCCHHHHHHHHHHHHHhchhhccC---cEecCCCCCc--cc--cccc----HHHHHHHHHHHHHcCCcEE
Confidence 4567899998888888888888888999998872 2222222221 22 1222 3344477777777777777
Q ss_pred CCCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEE-EECCccHHHHHHHhhhcCCCCCceEEEEecCCCCCCC-C
Q psy10250 140 SGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAV-CVYPARVVDVIKVLDRENARDDVKVASVAAGFPSGQY-L 217 (387)
Q Consensus 140 ~~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aV-cV~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~-~ 217 (387)
..-...+++.-+.+-+- -+.+.|- |.+..++..+.+ ++.+| .+=.|.. +
T Consensus 162 tev~d~~~~~~l~~~vd----------------~lqIgAr~~~N~~LL~~va~--------~~kPV-----iLk~G~~~t 212 (335)
T PRK08673 162 TEVMDPRDVELVAEYVD----------------ILQIGARNMQNFDLLKEVGK--------TNKPV-----LLKRGMSAT 212 (335)
T ss_pred EeeCCHHHHHHHHHhCC----------------eEEECcccccCHHHHHHHHc--------CCCcE-----EEeCCCCCC
Confidence 77777777776654421 1233332 223333333321 23322 4556766 6
Q ss_pred HHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCC-hHHHHHHHHHHHHcC
Q psy10250 218 LETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKT-SENIYCASMTAMFAG 296 (387)
Q Consensus 218 ~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t-~e~i~~a~~ia~~aG 296 (387)
.+.-..-++...+.|-..+= .+..|--.-..|....-+++.+...-.. -.+.||.-.+--.. .+.+.-+++.|..+|
T Consensus 213 i~E~l~A~e~i~~~GN~~vi-L~erG~~tf~~~~~~~ldl~ai~~lk~~-~~lPVi~d~sH~~G~~~~v~~~a~AAvA~G 290 (335)
T PRK08673 213 IEEWLMAAEYILAEGNPNVI-LCERGIRTFETATRNTLDLSAVPVIKKL-THLPVIVDPSHATGKRDLVEPLALAAVAAG 290 (335)
T ss_pred HHHHHHHHHHHHHcCCCeEE-EEECCCCCCCCcChhhhhHHHHHHHHHh-cCCCEEEeCCCCCccccchHHHHHHHHHhC
Confidence 67666677777778887653 3333210001344444455555533221 24788887655533 355667899999999
Q ss_pred CC--EEEcCCC----C--CCCCCChhhhHhHHHHHHHHHHHcCC
Q psy10250 297 SD--FIKTSTG----K--EKTNATIPAGIIMCSAIKHFHKLSGK 332 (387)
Q Consensus 297 aD--fVKTSTG----f--~~~gat~~~~~~m~~~v~~~~~~~~~ 332 (387)
|| ||-+--= + ++...+|+....|++.++.+.+..|.
T Consensus 291 AdGliIE~H~~pd~alsD~~~sl~p~e~~~lv~~i~~i~~~~g~ 334 (335)
T PRK08673 291 ADGLIVEVHPDPEKALSDGPQSLTPEEFEELMKKLRAIAEALGR 334 (335)
T ss_pred CCEEEEEecCCcccCCCcchhcCCHHHHHHHHHHHHHHHHHhCC
Confidence 99 8865321 1 12346788888888999888776553
No 448
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=60.94 E-value=48 Score=31.29 Aligned_cols=71 Identities=15% Similarity=0.050 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcC
Q psy10250 281 TSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG 360 (387)
Q Consensus 281 t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~G 360 (387)
+.++....++.+.++|...|--.- .|+.. .+.|+.+++..+ ++-| -+|.|-|.+|+...+ .+|
T Consensus 14 ~~~~a~~ia~al~~gGi~~iEit~------~tp~a----~~~I~~l~~~~~-~~~v-GAGTVl~~e~a~~ai-----~aG 76 (201)
T PRK06015 14 DVEHAVPLARALAAGGLPAIEITL------RTPAA----LDAIRAVAAEVE-EAIV-GAGTILNAKQFEDAA-----KAG 76 (201)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeC------CCccH----HHHHHHHHHHCC-CCEE-eeEeCcCHHHHHHHH-----HcC
Confidence 678888999999999999987422 12221 145666666654 3333 269999999999999 599
Q ss_pred CCcc-CCCc
Q psy10250 361 PDWL-NKDL 368 (387)
Q Consensus 361 a~w~-~~~~ 368 (387)
++++ +|+.
T Consensus 77 A~FivSP~~ 85 (201)
T PRK06015 77 SRFIVSPGT 85 (201)
T ss_pred CCEEECCCC
Confidence 9755 4443
No 449
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=60.89 E-value=63 Score=31.25 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=50.7
Q ss_pred HHHHHHHHcCCCeeeeecchhHHhcCCh----hHHHHHHHHHHHHcccCccEEEEEeccCCCCHHHHHHHHHHHHHcCCC
Q psy10250 14 HEIELLAKQKVDEVDIVIQRSLVLNNQW----PELFSEVKQMKEKCEEKIHMKTILAVGELKTSENIYYASMTAMFAGSD 89 (387)
Q Consensus 14 ~E~~~a~~~GA~EiD~Vin~~~lk~g~~----~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~~~e~i~~a~~~a~~ag~d 89 (387)
.+.-.|.+.|||=|.+- |+..+=..-. ++|.+--++.++..++ .++-|-+=-- |.=++++. .+....++|+|
T Consensus 72 ~~f~~aV~AGAdliEIG-NfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~-~~LsVTVPHi-L~ld~Qv~-LA~~L~~~GaD 147 (242)
T PF04481_consen 72 ELFVAAVKAGADLIEIG-NFDSFYAQGRRFSAEEVLALTRETRSLLPD-ITLSVTVPHI-LPLDQQVQ-LAEDLVKAGAD 147 (242)
T ss_pred HHHHHHHHhCCCEEEec-chHHHHhcCCeecHHHHHHHHHHHHHhCCC-CceEEecCcc-ccHHHHHH-HHHHHHHhCCc
Confidence 34567889999988876 7665543222 3343434444444543 6677766442 32345554 55566999999
Q ss_pred EEecCCCCCC
Q psy10250 90 FIKTSTGKEK 99 (387)
Q Consensus 90 fvKTSTG~~~ 99 (387)
.|+|--|.+.
T Consensus 148 iIQTEGgtss 157 (242)
T PF04481_consen 148 IIQTEGGTSS 157 (242)
T ss_pred EEEcCCCCCC
Confidence 9999877543
No 450
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=60.70 E-value=1.1e+02 Score=31.08 Aligned_cols=77 Identities=17% Similarity=0.122 Sum_probs=53.8
Q ss_pred ceEEEEeeccCCChHHHHHHHHHHHHcC--CCEEEcCC--CCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCC
Q psy10250 269 HMKTILAVGELKTSENIYCASMTAMFAG--SDFIKTST--GKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGIST 344 (387)
Q Consensus 269 ~lKvIlEt~~L~t~e~i~~a~~ia~~aG--aDfVKTST--Gf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt 344 (387)
.+-+.+-.+.- ++++.++..+ .++| +|||-.=+ |.+ .-+++.|+.+++..+ .-+..+|+|-|
T Consensus 82 ~L~v~~SvG~t--~e~~~r~~~l-v~a~~~~d~i~~D~ahg~s---------~~~~~~i~~i~~~~p--~~~vi~GnV~t 147 (321)
T TIGR01306 82 GLFASISVGVK--ACEYEFVTQL-AEEALTPEYITIDIAHGHS---------NSVINMIKHIKTHLP--DSFVIAGNVGT 147 (321)
T ss_pred ccEEEEEcCCC--HHHHHHHHHH-HhcCCCCCEEEEeCccCch---------HHHHHHHHHHHHhCC--CCEEEEecCCC
Confidence 35677777755 5667666555 5556 79886433 432 224467888887764 34678899999
Q ss_pred HHHHHHHHHHHHHhcCCCcc
Q psy10250 345 FEDSVRWIYLVLIMLGPDWL 364 (387)
Q Consensus 345 ~~~a~~~i~l~~~~~Ga~w~ 364 (387)
.++|..++ ++|++.+
T Consensus 148 ~e~a~~l~-----~aGad~I 162 (321)
T TIGR01306 148 PEAVRELE-----NAGADAT 162 (321)
T ss_pred HHHHHHHH-----HcCcCEE
Confidence 99999999 5999865
No 451
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=60.63 E-value=38 Score=33.63 Aligned_cols=78 Identities=23% Similarity=0.162 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHcccCccEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEe
Q psy10250 13 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGELKTSENIYYASMTAMFAGSDFIK 92 (387)
Q Consensus 13 ~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~~~e~i~~a~~~a~~ag~dfvK 92 (387)
..|+++|++.|||-| |.=|.+ -+|+++.++..+. .=++++|.+==-+.+.+..-+ .-|+|||
T Consensus 198 le~~~eAl~agaDiI-mLDNm~----------~e~~~~av~~l~~--~~~~~lEaSGgIt~~ni~~yA----~tGVD~I- 259 (280)
T COG0157 198 LEEAEEALEAGADII-MLDNMS----------PEELKEAVKLLGL--AGRALLEASGGITLENIREYA----ETGVDVI- 259 (280)
T ss_pred HHHHHHHHHcCCCEE-EecCCC----------HHHHHHHHHHhcc--CCceEEEEeCCCCHHHHHHHh----hcCCCEE-
Confidence 568999999999864 211222 1666777666422 127899975333677766443 4599998
Q ss_pred cCCCCCCCCCCCcccccc
Q psy10250 93 TSTGKEKTNATIPADLTR 110 (387)
Q Consensus 93 TSTG~~~~gat~~~~~~~ 110 (387)
|+|+-.. ..+..|++|
T Consensus 260 -S~galth-s~~~lDisl 275 (280)
T COG0157 260 -SVGALTH-SAPALDISL 275 (280)
T ss_pred -EeCcccc-CCcccceEE
Confidence 6676433 336678877
No 452
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=60.33 E-value=39 Score=35.75 Aligned_cols=84 Identities=27% Similarity=0.318 Sum_probs=50.2
Q ss_pred ceEEEEeeccCCChHHHHHHHHHHHHcC-CCEEEcCCCCCCCCCChh-hhHhHHHHHHHHHHHc------CCCceEeEec
Q psy10250 269 HMKTILAVGELKTSENIYCASMTAMFAG-SDFIKTSTGKEKTNATIP-AGIIMCSAIKHFHKLS------GKKIGLKPAG 340 (387)
Q Consensus 269 ~lKvIlEt~~L~t~e~i~~a~~ia~~aG-aDfVKTSTGf~~~gat~~-~~~~m~~~v~~~~~~~------~~~~gIKasG 340 (387)
.++-+++.+.+ |.||- +++.+.| +|.|-.. +..+|=|-. -...++..|..+++.+ +.++.|=|+|
T Consensus 159 ~v~~L~~~G~i-t~eEA----~~a~~~g~aD~Ivve--~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAG 231 (444)
T TIGR02814 159 ILQKLLAEGRI-TREEA----ELARRVPVADDICVE--ADSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAG 231 (444)
T ss_pred HHHHHHHcCCC-CHHHH----HHHHhCCCCcEEEEe--ccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeC
Confidence 34444555555 55654 6677888 5888442 433332110 0112334444443333 3367799999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCcc
Q psy10250 341 GISTFEDSVRWIYLVLIMLGPDWL 364 (387)
Q Consensus 341 GIrt~~~a~~~i~l~~~~~Ga~w~ 364 (387)
||-|.+++...+ .+||+.+
T Consensus 232 GI~t~~~vaAAl-----aLGAdgV 250 (444)
T TIGR02814 232 GIGTPEAAAAAF-----MLGADFI 250 (444)
T ss_pred CCCCHHHHHHHH-----HcCCcEE
Confidence 999999999999 5999754
No 453
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=59.89 E-value=44 Score=33.25 Aligned_cols=78 Identities=18% Similarity=0.109 Sum_probs=48.4
Q ss_pred HHHHHHHHHH-cCCCeeeeec----------chhHHhcCChhHHHHHHHHHHHHcccCccEEEEEeccCCCCHHHHHHHH
Q psy10250 12 RLHEIELLAK-QKVDEVDIVI----------QRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGELKTSENIYYAS 80 (387)
Q Consensus 12 K~~E~~~a~~-~GA~EiD~Vi----------n~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~~~e~i~~a~ 80 (387)
.+.++...+. .|+++||+=+ ..|+-+-.+++.+.+=++++++.++..+.+|+ =.|.-.+.++....+
T Consensus 67 ~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKi--R~g~~~~~~~~~~~~ 144 (309)
T PF01207_consen 67 DLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKI--RLGWDDSPEETIEFA 144 (309)
T ss_dssp HHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEE--ESECT--CHHHHHHH
T ss_pred HHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEec--ccccccchhHHHHHH
Confidence 3444444444 4999999743 24555556889999999999988763344444 445444557778888
Q ss_pred HHHHHcCCCEE
Q psy10250 81 MTAMFAGSDFI 91 (387)
Q Consensus 81 ~~a~~ag~dfv 91 (387)
+...++|+++|
T Consensus 145 ~~l~~~G~~~i 155 (309)
T PF01207_consen 145 RILEDAGVSAI 155 (309)
T ss_dssp HHHHHTT--EE
T ss_pred HHhhhcccceE
Confidence 99999999997
No 454
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=59.29 E-value=29 Score=31.96 Aligned_cols=70 Identities=9% Similarity=0.042 Sum_probs=48.0
Q ss_pred HHHHHHHHHCCCCeeeeecCchhhhcCChhHH-HHHHHHHHHHhCC-CcceEEEEeeccCCChHHHHHHHHHHHHcCCCE
Q psy10250 222 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPEL-FSEVKQMKEKCGE-KIHMKTILAVGELKTSENIYCASMTAMFAGSDF 299 (387)
Q Consensus 222 ~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v-~~Ei~~v~~~~~~-~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDf 299 (387)
...++.|++.|||-|=++..- ....++ .++.+++++.+++ ...+-|++-. .+....+++.+.|+|+
T Consensus 9 ~ed~~~a~~~Gvd~ig~i~~~-----~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~-------~~~~i~~ia~~~~~d~ 76 (203)
T cd00405 9 LEDALAAAEAGADAIGFIFAP-----KSPRYVSPEQAREIVAALPPFVKRVGVFVNE-------DLEEILEIAEELGLDV 76 (203)
T ss_pred HHHHHHHHHcCCCEEEEecCC-----CCCCCCCHHHHHHHHHhCCCCCcEEEEEeCC-------CHHHHHHHHHhcCCCE
Confidence 457899999999999887432 345567 7888889988875 1345554421 1333456678889999
Q ss_pred EEcC
Q psy10250 300 IKTS 303 (387)
Q Consensus 300 VKTS 303 (387)
|.-.
T Consensus 77 Vqlh 80 (203)
T cd00405 77 VQLH 80 (203)
T ss_pred EEEC
Confidence 9853
No 455
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=59.17 E-value=50 Score=32.01 Aligned_cols=79 Identities=10% Similarity=0.062 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCC
Q psy10250 218 LETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGS 297 (387)
Q Consensus 218 ~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGa 297 (387)
.+.-+..+++.++.|||-||+-... +.-+. .+|+.++.........+.+.|.|. +.+-+..|.+.+ .|+
T Consensus 25 ~d~~~~~A~~~~~~GAdiIDIG~~~-----~~~~~-~ee~~r~v~~i~~~~~~piSIDT~---~~~v~e~aL~~~--~G~ 93 (252)
T cd00740 25 YDEALDVARQQVEGGAQILDLNVDY-----GGLDG-VSAMKWLLNLLATEPTVPLMLDST---NWEVIEAGLKCC--QGK 93 (252)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCC-----CCCCH-HHHHHHHHHHHHHhcCCcEEeeCC---cHHHHHHHHhhC--CCC
Confidence 4555677888899999999986533 22222 457777765554311345667665 334343333332 399
Q ss_pred CEEEcCCCCC
Q psy10250 298 DFIKTSTGKE 307 (387)
Q Consensus 298 DfVKTSTGf~ 307 (387)
+.|..-+|+.
T Consensus 94 ~iINsIs~~~ 103 (252)
T cd00740 94 CVVNSINLED 103 (252)
T ss_pred cEEEeCCCCC
Confidence 9999888863
No 456
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=58.96 E-value=1.8e+02 Score=28.15 Aligned_cols=131 Identities=11% Similarity=-0.007 Sum_probs=73.0
Q ss_pred HHHHHHHHHCCCCeeeeecCch-hhhcCCh-hHHHHHHHHHHHHhCCCcceEEEEeecc----CCChHHH--------HH
Q psy10250 222 LHEIELLAKQKVDEVDIVIQRS-LVLNNQW-PELFSEVKQMKEKCGEKIHMKTILAVGE----LKTSENI--------YC 287 (387)
Q Consensus 222 ~~Ea~~Ai~~GAdEID~Vin~~-~lk~g~~-~~v~~Ei~~v~~~~~~~~~lKvIlEt~~----L~t~e~i--------~~ 287 (387)
....+++.+.|++-+++.+.-. .++.... +...+++++..+..+- ....+.+=.+| -+.++++ .+
T Consensus 14 ~~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~Hapy~iNlas~~~~~r~~sv~~~~~ 92 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLKSPRWWRRPMLEEEVIDWFKAALETNKN-LSQIVLVHAPYLINLASPDEEKEEKSLDVLDE 92 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecCccccCCCCCCHHHHHHHHHHHHHcCC-CCcceeccCCeeeecCCCCHHHHHHHHHHHHH
Confidence 3478899999999999987644 3443322 4445566555443321 01112222333 1113443 34
Q ss_pred HHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCC-CceEeE-ecc----CCCHHHHHHHHH
Q psy10250 288 ASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGK-KIGLKP-AGG----ISTFEDSVRWIY 353 (387)
Q Consensus 288 a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~-~~gIKa-sGG----Irt~~~a~~~i~ 353 (387)
+.+.|.+.|+++|-+-+|+....-..+....+.+.++.+.+...+ ++.+=- .|. .+++++...++.
T Consensus 93 ~i~~A~~lga~~vv~H~G~~~~~~~e~~~~~~~~~l~~l~~~~~~v~l~lEN~~~~~~~l~~~~~el~~ll~ 164 (274)
T TIGR00587 93 ELKRCELLGIMLYNFHPGSALKCSEEEGLDNLIESLNVVIKETKIVTILLENMAGQGSELGRSFEELAYIIK 164 (274)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHhccCCCEEEEEeCCCCCCccCCCHHHHHHHHH
Confidence 567799999999999999864332222334455555554432221 233332 232 358999999986
No 457
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=58.74 E-value=1.3e+02 Score=28.51 Aligned_cols=105 Identities=16% Similarity=0.221 Sum_probs=70.3
Q ss_pred HHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEE
Q psy10250 222 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 301 (387)
Q Consensus 222 ~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVK 301 (387)
...++.|++.|++-+-+- -|+.+....++..++++++|+. .-+.+|| ++. .++|.+.|||.|.
T Consensus 24 ~~~ve~al~~Gv~~vQlR-----~K~~~~~~~~~~a~~~~~lc~~-~~v~liI------Nd~-----~dlA~~~~AdGVH 86 (211)
T COG0352 24 LEWVEAALKGGVTAVQLR-----EKDLSDEEYLALAEKLRALCQK-YGVPLII------NDR-----VDLALAVGADGVH 86 (211)
T ss_pred HHHHHHHHhCCCeEEEEe-----cCCCChHHHHHHHHHHHHHHHH-hCCeEEe------cCc-----HHHHHhCCCCEEE
Confidence 778899999997765443 2445555567888899999975 3466666 222 2568899999998
Q ss_pred cCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCcc
Q psy10250 302 TSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 364 (387)
Q Consensus 302 TSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~ 364 (387)
-+..- .. +...++..+++..|=. .+++.+++.... .+|+|++
T Consensus 87 lGq~D----~~----------~~~ar~~~~~~~iIG~--S~h~~eea~~A~-----~~g~DYv 128 (211)
T COG0352 87 LGQDD----MP----------LAEARELLGPGLIIGL--STHDLEEALEAE-----ELGADYV 128 (211)
T ss_pred cCCcc----cc----------hHHHHHhcCCCCEEEe--ecCCHHHHHHHH-----hcCCCEE
Confidence 65541 11 2233445666655544 467999999988 5787643
No 458
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=58.70 E-value=43 Score=33.24 Aligned_cols=75 Identities=19% Similarity=0.168 Sum_probs=44.8
Q ss_pred HHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHcccCccEEEEEec-cCCCCHHHHHHHHHHHHHcCCCEE
Q psy10250 13 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAV-GELKTSENIYYASMTAMFAGSDFI 91 (387)
Q Consensus 13 ~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt-~~L~~~e~i~~a~~~a~~ag~dfv 91 (387)
..|+++|++.|||-|= .=|.+ -+|+++.++..++. .++|. |=. |.+.+...+ ..|+|||
T Consensus 204 leea~ea~~~gaDiI~-LDn~s----------~e~l~~av~~~~~~----~~leaSGGI-~~~ni~~yA----~tGVD~I 263 (281)
T PRK06106 204 LDQLEEALELGVDAVL-LDNMT----------PDTLREAVAIVAGR----AITEASGRI-TPETAPAIA----ASGVDLI 263 (281)
T ss_pred HHHHHHHHHcCCCEEE-eCCCC----------HHHHHHHHHHhCCC----ceEEEECCC-CHHHHHHHH----hcCCCEE
Confidence 4589999999997641 11222 16777777665542 22554 445 777776443 5699998
Q ss_pred ecCCCCCCCCCCCcccccc
Q psy10250 92 KTSTGKEKTNATIPADLTR 110 (387)
Q Consensus 92 KTSTG~~~~gat~~~~~~~ 110 (387)
-||. -...+ ++.|++|
T Consensus 264 s~Ga--lthsa-~~~Disl 279 (281)
T PRK06106 264 SVGW--LTHSA-PVLDIGL 279 (281)
T ss_pred EeCh--hhcCC-Ccccccc
Confidence 5544 32223 5556665
No 459
>PLN02489 homocysteine S-methyltransferase
Probab=58.70 E-value=73 Score=32.21 Aligned_cols=52 Identities=12% Similarity=0.126 Sum_probs=31.7
Q ss_pred cCCChHHHHHHHHHHHHcCCCEEEcCCCCCC-------CCCChhh-hHhHHHHHHHHHHHc
Q psy10250 278 ELKTSENIYCASMTAMFAGSDFIKTSTGKEK-------TNATIPA-GIIMCSAIKHFHKLS 330 (387)
Q Consensus 278 ~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~-------~gat~~~-~~~m~~~v~~~~~~~ 330 (387)
.+..+|.|.+.-+-=++||||.|.|+| |.. .|.+.+. -.++..+|++.++..
T Consensus 50 ll~~Pe~V~~vH~~yl~AGAdvI~TnT-y~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~ 109 (335)
T PLN02489 50 LITSPHLIRKVHLDYLEAGADIIITAS-YQATIQGFESRGLSREESETLLRKSVEIACEAR 109 (335)
T ss_pred hcCCHHHHHHHHHHHHHhCCCEEEecc-cccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 345567777777778889999998888 422 2333232 234555666655553
No 460
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=58.62 E-value=20 Score=35.26 Aligned_cols=65 Identities=12% Similarity=0.156 Sum_probs=40.1
Q ss_pred HHHHHHcCCCEEEc--CCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCC
Q psy10250 289 SMTAMFAGSDFIKT--STGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNK 366 (387)
Q Consensus 289 ~~ia~~aGaDfVKT--STGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~ 366 (387)
++.-.+.|++++.- =.| ..+... +.|+.+.+ ++ +.|=.-||||+ +++..++ .+|++
T Consensus 49 A~~~~~~Ga~~lHvVDLdg--g~~~n~-------~~i~~i~~-~~--~~vqvGGGIR~-e~i~~~l-----~~Ga~---- 106 (262)
T PLN02446 49 AEMYKRDGLTGGHVIMLGA--DDASLA-------AALEALRA-YP--GGLQVGGGVNS-ENAMSYL-----DAGAS---- 106 (262)
T ss_pred HHHHHHCCCCEEEEEECCC--CCcccH-------HHHHHHHh-CC--CCEEEeCCccH-HHHHHHH-----HcCCC----
Confidence 45566788877653 123 112222 34555555 33 77888999996 9999999 58983
Q ss_pred Ccceeeccch
Q psy10250 367 DLFRIGASSL 376 (387)
Q Consensus 367 ~~~RIGtSs~ 376 (387)
+.-|||...
T Consensus 107 -rViigT~Av 115 (262)
T PLN02446 107 -HVIVTSYVF 115 (262)
T ss_pred -EEEEchHHH
Confidence 233566543
No 461
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=58.45 E-value=1.9e+02 Score=28.44 Aligned_cols=129 Identities=11% Similarity=-0.059 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHHCC-----CCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHH
Q psy10250 217 LLETRLHEIELLAKQK-----VDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMT 291 (387)
Q Consensus 217 ~~e~K~~Ea~~Ai~~G-----AdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~i 291 (387)
+++.|+.=++...+.| .++|++. . +-+ .-.++++++.+. +. ...++.. ..-. +.+.+ +.
T Consensus 19 ~~~~Kv~i~~~L~~~G~~~~~v~~IE~~-s---~~~----~d~~~v~~~~~~-~~-~~~~v~~-~~r~-~~~di----e~ 82 (279)
T cd07947 19 TVEQIVKIYDYLHELGGGSGVIRQTEFF-L---YTE----KDREAVEACLDR-GY-KFPEVTG-WIRA-NKEDL----KL 82 (279)
T ss_pred CHHHHHHHHHHHHHcCCCCCccceEEec-C---cCh----HHHHHHHHHHHc-CC-CCCEEEE-EecC-CHHHH----HH
Confidence 8999999999999999 9999972 2 221 223344444431 10 0123322 1223 34445 44
Q ss_pred HHHcCCCEEE----cCCCCC--CCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCC-H-----HHHHHHHHHHHHhc
Q psy10250 292 AMFAGSDFIK----TSTGKE--KTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGIST-F-----EDSVRWIYLVLIML 359 (387)
Q Consensus 292 a~~aGaDfVK----TSTGf~--~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt-~-----~~a~~~i~l~~~~~ 359 (387)
|.++|+|.|. +|-.+. .-+.|.+.+..++.++-.+.+..+-++.+=+-|.+|+ + +-+.+++.++. .+
T Consensus 83 A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~d~~~~v~~~~~~~~~~~~-~~ 161 (279)
T cd07947 83 VKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLEDITRADIYGFVLPFVNKLMKLSK-ES 161 (279)
T ss_pred HHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEEcccCCCcccchHHHHHHHHHHHH-HC
Confidence 5677998555 444432 2357777666555555455455566666666677776 2 24555554432 46
Q ss_pred CCC
Q psy10250 360 GPD 362 (387)
Q Consensus 360 Ga~ 362 (387)
|++
T Consensus 162 G~~ 164 (279)
T cd07947 162 GIP 164 (279)
T ss_pred CCC
Confidence 873
No 462
>PTZ00095 40S ribosomal protein S19; Provisional
Probab=58.36 E-value=18 Score=33.36 Aligned_cols=72 Identities=25% Similarity=0.317 Sum_probs=0.0
Q ss_pred CCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHH-cCCCceE----eEeccCCCHHHHHHHHHHHHHhcCCCccCCCccee
Q psy10250 297 SDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKL-SGKKIGL----KPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRI 371 (387)
Q Consensus 297 aDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~-~~~~~gI----KasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RI 371 (387)
+|||||++++.-.+..++=-.+-|-+| +++. ..+.+|| |..||=+. -|. .|..++-
T Consensus 56 ~d~vKTg~~KElaP~d~DW~YiRaASi--lRkiYlrgpvGV~~Lrk~YGg~kr--------------rG~---~P~h~~~ 116 (169)
T PTZ00095 56 TEIVKTSHGRELAPQNPDWYYIRCAAV--LRALYLRPDVGYGGLRKRFSSKKR--------------RGS---APNHTVR 116 (169)
T ss_pred hhhhcccccccCCCCCccHHHHHHHHH--HHHHHhcCCccHHHHHHHHCCCCC--------------CCC---CCCcccC
Q ss_pred eccchHHHHHHHHhhC
Q psy10250 372 GASSLLNNILQELEAL 387 (387)
Q Consensus 372 GtSs~~~il~~~~~~~ 387 (387)
|..+..--+.++||++
T Consensus 117 aSg~iiR~~LQqLE~~ 132 (169)
T PTZ00095 117 ASGKILRWICQQLEKL 132 (169)
T ss_pred CchHHHHHHHHHHHHC
No 463
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=58.26 E-value=1.9e+02 Score=28.28 Aligned_cols=131 Identities=12% Similarity=0.047 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccC-CCeEEEEECC--------------ccHHHHHHHhhhcCCCCCceE
Q psy10250 140 SGDDTEAVVETLTLKAIQPLSEELKEKVLHQQAN-VHTAAVCVYP--------------ARVVDVIKVLDRENARDDVKV 204 (387)
Q Consensus 140 ~~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~-~~~~aVcV~P--------------~~v~~a~~~L~~~~~~~~v~v 204 (387)
+.....+.++++++..+ + .|+.++++.- ..++.+++..++ .++|
T Consensus 18 dg~iD~~~~~~li~~l~----------------~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~-----~~~v 76 (293)
T PRK04147 18 DGQIDEQGLRRLVRFNI----------------EKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKG-----KVKL 76 (293)
T ss_pred CCCcCHHHHHHHHHHHH----------------hcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCC-----CCCE
Q ss_pred EEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEe-----eccC
Q psy10250 205 ASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILA-----VGEL 279 (387)
Q Consensus 205 ~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlE-----t~~L 279 (387)
-+-+ |..+++.-+..++.|.+.|||-+=++.++ +....-+.+.+-.++|.++++ +-||+= |+.-
T Consensus 77 iagv-----g~~~t~~ai~~a~~a~~~Gad~v~v~~P~--y~~~~~~~l~~~f~~va~a~~----lPv~iYn~P~~tg~~ 145 (293)
T PRK04147 77 IAQV-----GSVNTAEAQELAKYATELGYDAISAVTPF--YYPFSFEEICDYYREIIDSAD----NPMIVYNIPALTGVN 145 (293)
T ss_pred EecC-----CCCCHHHHHHHHHHHHHcCCCEEEEeCCc--CCCCCHHHHHHHHHHHHHhCC----CCEEEEeCchhhccC
Q ss_pred CChHHHHHHHHHHHHcCCCEEEcCCC
Q psy10250 280 KTSENIYCASMTAMFAGSDFIKTSTG 305 (387)
Q Consensus 280 ~t~e~i~~a~~ia~~aGaDfVKTSTG 305 (387)
-+.+.+.+.++ .-..-.||-|+|
T Consensus 146 l~~~~l~~L~~---~pnvvgiK~s~~ 168 (293)
T PRK04147 146 LSLDQFNELFT---LPKVIGVKQTAG 168 (293)
T ss_pred CCHHHHHHHhc---CCCEEEEEeCCC
No 464
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=57.88 E-value=1.9e+02 Score=28.19 Aligned_cols=97 Identities=16% Similarity=0.075 Sum_probs=61.4
Q ss_pred ceEEEEecCC-CCCCCCHHHHHHHHHHHHHC-CCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccC
Q psy10250 202 VKVASVAAGF-PSGQYLLETRLHEIELLAKQ-KVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGEL 279 (387)
Q Consensus 202 v~v~tVvigF-P~G~~~~e~K~~Ea~~Ai~~-GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L 279 (387)
+-.+.+ .=| +.|.-..+.=...+++.++. |++-|=+-=..|..-+=..++-.+=++.+++.+.+ .+.||.=++-.
T Consensus 4 v~~a~~-TPf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~--~~~viagv~~~ 80 (288)
T cd00954 4 LIAALL-TPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKG--KVTLIAHVGSL 80 (288)
T ss_pred eeeceE-CCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC--CCeEEeccCCC
Confidence 333444 455 66777788888888999998 98885333333333222223333334445555554 57888888877
Q ss_pred CChHHHHHHHHHHHHcCCCEEEc
Q psy10250 280 KTSENIYCASMTAMFAGSDFIKT 302 (387)
Q Consensus 280 ~t~e~i~~a~~ia~~aGaDfVKT 302 (387)
++ ++..+.++.|.++|||.|=-
T Consensus 81 ~~-~~ai~~a~~a~~~Gad~v~~ 102 (288)
T cd00954 81 NL-KESQELAKHAEELGYDAISA 102 (288)
T ss_pred CH-HHHHHHHHHHHHcCCCEEEE
Confidence 54 55667888899999998753
No 465
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=57.82 E-value=1.1e+02 Score=29.57 Aligned_cols=130 Identities=16% Similarity=0.096 Sum_probs=82.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHcccCccEEEEEeccCCCCHHHHHHHHHHH
Q psy10250 4 SGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGELKTSENIYYASMTA 83 (387)
Q Consensus 4 ~G~~~~~~K~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~~~e~i~~a~~~a 83 (387)
.|.-..+.=...+++.++.|++-|=+-=..|..-+=.+++-.+=++.+++.+++ .+.||.=++..++ ++-.+.++.|
T Consensus 12 dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~--~~~vi~gv~~~~~-~~~i~~a~~a 88 (281)
T cd00408 12 DGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAG--RVPVIAGVGANST-REAIELARHA 88 (281)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCC--CCeEEEecCCccH-HHHHHHHHHH
Confidence 445555666677899999999997554455544444455555556666666654 4789999998755 4556677888
Q ss_pred HHcCCCEEecCCCCCCCCCCCcccccchhccccchhhhhhHHHHHHhhcccccccC--------CCCCCHHHHHHHHH
Q psy10250 84 MFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEFIDLTTL--------SGDDTEAVVETLTL 153 (387)
Q Consensus 84 ~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ID~T~L--------~~~~T~~~i~~l~~ 153 (387)
.++|+|.|=-..-|... .++ +...+++++++...|.-+. .-+.+.+.+.++++
T Consensus 89 ~~~Gad~v~v~pP~y~~----------------~~~-~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~ 149 (281)
T cd00408 89 EEAGADGVLVVPPYYNK----------------PSQ-EGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAE 149 (281)
T ss_pred HHcCCCEEEECCCcCCC----------------CCH-HHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhc
Confidence 99999998765543221 122 3334455555555444332 34567888888864
No 466
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=57.64 E-value=1.9e+02 Score=28.15 Aligned_cols=200 Identities=14% Similarity=0.092 Sum_probs=115.8
Q ss_pred EeccCCCCHHHHHHHHHHHHHcCCCEEecCCCCCCCCCCCcccccchhccccchhh------hhhHHHHHHhh------c
Q psy10250 65 LAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRL------KNKKSLLLKII------E 132 (387)
Q Consensus 65 lEt~~L~~~e~i~~a~~~a~~ag~dfvKTSTG~~~~gat~~~~~~~~~~~~~~~~~------~~~~~~~~~l~------~ 132 (387)
+=.|| .+.+.-.++.+...+.|+|+|-=.-=|+.+-|.=| .- +......| +.--++++++. +
T Consensus 18 i~aG~-P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGp---vI--q~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p 91 (258)
T PRK13111 18 ITAGD-PDLETSLEIIKALVEAGADIIELGIPFSDPVADGP---VI--QAASLRALAAGVTLADVFELVREIREKDPTIP 91 (258)
T ss_pred EeCCC-CCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCH---HH--HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence 34455 36676777777889999999997777776644333 11 11111111 22334555554 2
Q ss_pred ccccccCCCCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEecCCC
Q psy10250 133 FIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFP 212 (387)
Q Consensus 133 ~ID~T~L~~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP 212 (387)
++=.|+.||-. .--++++++++. +.|+.++.|+---...+.+..+... ..++.....+
T Consensus 92 ~vlm~Y~N~i~-~~G~e~f~~~~~----------------~aGvdGviipDLp~ee~~~~~~~~~-~~gl~~I~lv---- 149 (258)
T PRK13111 92 IVLMTYYNPIF-QYGVERFAADAA----------------EAGVDGLIIPDLPPEEAEELRAAAK-KHGLDLIFLV---- 149 (258)
T ss_pred EEEEecccHHh-hcCHHHHHHHHH----------------HcCCcEEEECCCCHHHHHHHHHHHH-HcCCcEEEEe----
Confidence 34445556532 236788899998 7899999998655555544442210 1355554432
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCeeeee--cCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHH
Q psy10250 213 SGQYLLETRLHEIELLAKQKVDEVDIV--IQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASM 290 (387)
Q Consensus 213 ~G~~~~e~K~~Ea~~Ai~~GAdEID~V--in~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ 290 (387)
..++++.+ ++...+..-+=|.+| +-+.-...+....+.+.++.+++.++ +.+++..+.= +.+++.++.
T Consensus 150 -ap~t~~er---i~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~----~pv~vGfGI~-~~e~v~~~~- 219 (258)
T PRK13111 150 -APTTTDER---LKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHTD----LPVAVGFGIS-TPEQAAAIA- 219 (258)
T ss_pred -CCCCCHHH---HHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCC----CcEEEEcccC-CHHHHHHHH-
Confidence 12222333 333444444557764 22333455566778888888888553 5778888854 778776654
Q ss_pred HHHHcCCCEEEcCCCC
Q psy10250 291 TAMFAGSDFIKTSTGK 306 (387)
Q Consensus 291 ia~~aGaDfVKTSTGf 306 (387)
. +||-+=..|.+
T Consensus 220 ---~-~ADGviVGSai 231 (258)
T PRK13111 220 ---A-VADGVIVGSAL 231 (258)
T ss_pred ---H-hCCEEEEcHHH
Confidence 2 37877767765
No 467
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=57.60 E-value=2.2e+02 Score=28.79 Aligned_cols=158 Identities=9% Similarity=0.053 Sum_probs=96.5
Q ss_pred CCceEEEEecCCC---CCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEee
Q psy10250 200 DDVKVASVAAGFP---SGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAV 276 (387)
Q Consensus 200 ~~v~v~tVvigFP---~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt 276 (387)
..+++-+. ++++ .|..+.+.-..+++++.+.|.+-+=+-+-. ..+++.-.+-++++++++++. +++.+..
T Consensus 124 ~~v~~y~s-~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~~~----~~~~~~di~~i~~vR~~~G~~--~~l~vDa 196 (368)
T cd03329 124 EKIPAYAS-TMVGDDLEGLESPEAYADFAEECKALGYRAIKLHPWG----PGVVRRDLKACLAVREAVGPD--MRLMHDG 196 (368)
T ss_pred cceeEEEe-cCCCcccccCCCHHHHHHHHHHHHHcCCCEEEEecCC----chhHHHHHHHHHHHHHHhCCC--CeEEEEC
Confidence 45666555 3443 355567777889999999999998774210 011444556678888888753 5666765
Q ss_pred cc-CCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCC-HHHHHHHHHH
Q psy10250 277 GE-LKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGIST-FEDSVRWIYL 354 (387)
Q Consensus 277 ~~-L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt-~~~a~~~i~l 354 (387)
.. + +.++-.+.++...+.+..|+--+.- +++. +..+.+++.+ .+.|-+-.-+.+ ++++..++.
T Consensus 197 n~~~-~~~~A~~~~~~l~~~~l~~iEeP~~-------~~d~----~~~~~l~~~~--~ipIa~~E~~~~~~~~~~~~i~- 261 (368)
T cd03329 197 AHWY-SRADALRLGRALEELGFFWYEDPLR-------EASI----SSYRWLAEKL--DIPILGTEHSRGALESRADWVL- 261 (368)
T ss_pred CCCc-CHHHHHHHHHHhhhcCCCeEeCCCC-------chhH----HHHHHHHhcC--CCCEEccCcccCcHHHHHHHHH-
Confidence 43 6 5666666666667788889876552 2111 1223333322 244433223567 888999985
Q ss_pred HHHhcCCCccCCCcceeec-cchHHHHHH
Q psy10250 355 VLIMLGPDWLNKDLFRIGA-SSLLNNILQ 382 (387)
Q Consensus 355 ~~~~~Ga~w~~~~~~RIGt-Ss~~~il~~ 382 (387)
.-.++.++++..|+|. +..+++..-
T Consensus 262 ---~~a~d~v~~d~~~~GGit~~~~ia~~ 287 (368)
T cd03329 262 ---AGATDFLRADVNLVGGITGAMKTAHL 287 (368)
T ss_pred ---hCCCCEEecCccccCCHHHHHHHHHH
Confidence 2346778899999855 666665543
No 468
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=57.55 E-value=2.3e+02 Score=29.06 Aligned_cols=75 Identities=17% Similarity=0.109 Sum_probs=52.5
Q ss_pred HHHHHHHHCCCCeeeee-----cCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCC
Q psy10250 223 HEIELLAKQKVDEVDIV-----IQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGS 297 (387)
Q Consensus 223 ~Ea~~Ai~~GAdEID~V-----in~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGa 297 (387)
..++.+++.|||-|=+- +..+..+.|---.-..=+..+++++++ .-+.||..-+.= ..-.|.|| +.+||
T Consensus 162 e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~-~~v~VIaDGGIr-~~gDI~KA----LA~GA 235 (343)
T TIGR01305 162 EMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHG-LKGHIISDGGCT-CPGDVAKA----FGAGA 235 (343)
T ss_pred HHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhcc-CCCeEEEcCCcC-chhHHHHH----HHcCC
Confidence 34678889999998877 555566655443445556667777765 357899988866 45667664 56899
Q ss_pred CEEEcC
Q psy10250 298 DFIKTS 303 (387)
Q Consensus 298 DfVKTS 303 (387)
|+|=-.
T Consensus 236 d~VMlG 241 (343)
T TIGR01305 236 DFVMLG 241 (343)
T ss_pred CEEEEC
Confidence 999765
No 469
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=57.37 E-value=1.8e+02 Score=28.61 Aligned_cols=100 Identities=15% Similarity=0.052 Sum_probs=59.0
Q ss_pred ceEEEEecCC-CCCCCCHHHHHHHHHHHHHCC-CCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccC
Q psy10250 202 VKVASVAAGF-PSGQYLLETRLHEIELLAKQK-VDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGEL 279 (387)
Q Consensus 202 v~v~tVvigF-P~G~~~~e~K~~Ea~~Ai~~G-AdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L 279 (387)
+-.+.+ .=| ..|.-..+.=...+++.++.| ++-|=+.=..|..-+=..++-.+=++.+++.+.+ .+.||.=++..
T Consensus 4 v~~~~~-TPf~~dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~--~~pvi~gv~~~ 80 (290)
T TIGR00683 4 IFSALL-VSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKD--QIALIAQVGSV 80 (290)
T ss_pred eEeeee-cCCCCCCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCC--CCcEEEecCCC
Confidence 444444 455 466666677777788888888 8874333233322222233333334445555543 46778887777
Q ss_pred CChHHHHHHHHHHHHcCCCEEEcCCC
Q psy10250 280 KTSENIYCASMTAMFAGSDFIKTSTG 305 (387)
Q Consensus 280 ~t~e~i~~a~~ia~~aGaDfVKTSTG 305 (387)
++ ++-.+.++.+.++|+|.|=-.+-
T Consensus 81 ~t-~~~i~la~~a~~~Gad~v~v~~P 105 (290)
T TIGR00683 81 NL-KEAVELGKYATELGYDCLSAVTP 105 (290)
T ss_pred CH-HHHHHHHHHHHHhCCCEEEEeCC
Confidence 55 44556778888888887765443
No 470
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=57.29 E-value=1e+02 Score=30.40 Aligned_cols=71 Identities=20% Similarity=0.106 Sum_probs=51.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcC
Q psy10250 281 TSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG 360 (387)
Q Consensus 281 t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~G 360 (387)
+.+...++.+.+.+.|+|.|-..-|-...+-. ...+.++.+++.++..+-+| ++.+.++|..+. ++|
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~-----~~~~~i~~l~~~~~~pvivK---~v~s~~~a~~a~-----~~G 193 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDTPVLGRR-----LTWDDLAWLRSQWKGPLILK---GILTPEDALRAV-----DAG 193 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC-----CCHHHHHHHHHhcCCCEEEe---ecCCHHHHHHHH-----HCC
Confidence 45667777888888999999876664322222 11246777777777778888 579999999998 599
Q ss_pred CCcc
Q psy10250 361 PDWL 364 (387)
Q Consensus 361 a~w~ 364 (387)
++++
T Consensus 194 ~d~I 197 (299)
T cd02809 194 ADGI 197 (299)
T ss_pred CCEE
Confidence 9887
No 471
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=57.26 E-value=22 Score=34.31 Aligned_cols=34 Identities=15% Similarity=0.025 Sum_probs=26.0
Q ss_pred HHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcCCC
Q psy10250 322 AIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362 (387)
Q Consensus 322 ~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~ 362 (387)
.|+.+.+.+. +.+=+.|||||.+++..++ .+|++
T Consensus 65 ~i~~i~~~~~--~~v~vgGGIrs~e~~~~~l-----~~Ga~ 98 (243)
T TIGR01919 65 MLEEVVKLLV--VVEELSGGRRDDSSLRAAL-----TGGRA 98 (243)
T ss_pred HHHHHHHHCC--CCEEEcCCCCCHHHHHHHH-----HcCCC
Confidence 4555554443 6788899999999999999 48984
No 472
>PRK05926 hypothetical protein; Provisional
Probab=57.09 E-value=48 Score=34.05 Aligned_cols=129 Identities=18% Similarity=0.156 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEE--eeccCC-----ChHHHHHH
Q psy10250 216 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTIL--AVGELK-----TSENIYCA 288 (387)
Q Consensus 216 ~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIl--Et~~L~-----t~e~i~~a 288 (387)
.+.+.-+.+++++ +.|++|+-+|- |.-.+-+++++.+-++.|++..++ ..++.+. |.+++. +.+ ..
T Consensus 99 ls~eeI~~~a~~a-~~G~~ei~iv~--G~~p~~~~e~~~e~i~~Ik~~~p~-i~i~a~s~~Ei~~~~~~~~~~~~---e~ 171 (370)
T PRK05926 99 YTPDQLVQSIKEN-PSPITETHIVA--GCFPSCNLAYYEELFSKIKQNFPD-LHIKALTAIEYAYLSKLDNLPVK---EV 171 (370)
T ss_pred CCHHHHHHHHHHH-hcCCCEEEEEe--CcCCCCCHHHHHHHHHHHHHhCCC-eeEEECCHHHHHHHHhhcCCCHH---HH
Confidence 3577788888888 79999999993 443445788888889999987765 5666654 333321 112 23
Q ss_pred HHHHHHcCCCEEEcCCCC-----------CCCCCChhhhHhHHHHHHHHHHHcCCCceEeEec-----cCCCHHHHHHHH
Q psy10250 289 SMTAMFAGSDFIKTSTGK-----------EKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAG-----GISTFEDSVRWI 352 (387)
Q Consensus 289 ~~ia~~aGaDfVKTSTGf-----------~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasG-----GIrt~~~a~~~i 352 (387)
.+...++|.|-+. .+|. .|...|.+ -+++.++..+ +.|++... =+-|+++-..++
T Consensus 172 l~~LkeAGl~~~~-g~GaEi~~e~~r~~~~p~~~t~~---e~l~~i~~a~-----~~Gi~~~sgmi~G~gEt~edrv~~l 242 (370)
T PRK05926 172 LQTLKIAGLDSIP-GGGAEILVDEIRETLAPGRLSSQ---GFLEIHKTAH-----SLGIPSNATMLCYHRETPEDIVTHM 242 (370)
T ss_pred HHHHHHcCcCccC-CCCchhcCHHHHHhhCCCCCCHH---HHHHHHHHHH-----HcCCcccCceEEeCCCCHHHHHHHH
Confidence 3557788998774 2233 22333433 2334444443 35555532 237888877776
Q ss_pred HHHHHhcCC
Q psy10250 353 YLVLIMLGP 361 (387)
Q Consensus 353 ~l~~~~~Ga 361 (387)
... ++++.
T Consensus 243 ~~L-r~Lq~ 250 (370)
T PRK05926 243 SKL-RALQD 250 (370)
T ss_pred HHH-HhcCC
Confidence 433 34454
No 473
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=56.93 E-value=2e+02 Score=28.18 Aligned_cols=162 Identities=16% Similarity=0.113 Sum_probs=98.4
Q ss_pred CCHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCc--------------cHHHHHHHhhhcCCCCCceEEEEe
Q psy10250 143 DTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPA--------------RVVDVIKVLDRENARDDVKVASVA 208 (387)
Q Consensus 143 ~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~--------------~v~~a~~~L~~~~~~~~v~v~tVv 208 (387)
...+.++++++..+ +.|+.++++.-+ .++.+++..+ ..+.|-+-
T Consensus 23 iD~~~l~~li~~l~----------------~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~-----g~~pvi~g- 80 (296)
T TIGR03249 23 FDEAAYRENIEWLL----------------GYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAK-----GKVPVYTG- 80 (296)
T ss_pred cCHHHHHHHHHHHH----------------hcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhC-----CCCcEEEe-
Confidence 45677778877777 678899998754 1233333333 24444333
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEe--ec-cCCChHHH
Q psy10250 209 AGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILA--VG-ELKTSENI 285 (387)
Q Consensus 209 igFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlE--t~-~L~t~e~i 285 (387)
+ |. .++.=+..++.|.+.|||-+ |+++...++ ...+.+.+-.++|.++++-+ +||= ++ .| +.+.+
T Consensus 81 v----~~-~t~~ai~~a~~a~~~Gadav-~~~pP~y~~-~s~~~i~~~f~~v~~a~~~p----vilYn~~g~~l-~~~~~ 148 (296)
T TIGR03249 81 V----GG-NTSDAIEIARLAEKAGADGY-LLLPPYLIN-GEQEGLYAHVEAVCESTDLG----VIVYQRDNAVL-NADTL 148 (296)
T ss_pred c----Cc-cHHHHHHHHHHHHHhCCCEE-EECCCCCCC-CCHHHHHHHHHHHHhccCCC----EEEEeCCCCCC-CHHHH
Confidence 2 33 37777889999999999999 555655554 35688888899998876422 3332 33 34 56656
Q ss_pred HHHHHHHH-HcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCC-HHHHHHHHHHHHHhcCC
Q psy10250 286 YCASMTAM-FAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGIST-FEDSVRWIYLVLIMLGP 361 (387)
Q Consensus 286 ~~a~~ia~-~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt-~~~a~~~i~l~~~~~Ga 361 (387)
. +++. .-....||=|+| +++ .++.+.+..++ .+.+..|-.. -..+..++ .+|+
T Consensus 149 ~---~La~~~~nvvgiKds~~------d~~-------~~~~~~~~~~~--~~~v~~G~~~~d~~~~~~~-----~~Ga 203 (296)
T TIGR03249 149 E---RLADRCPNLVGFKDGIG------DME-------QMIEITQRLGD--RLGYLGGMPTAEVTAPAYL-----PLGV 203 (296)
T ss_pred H---HHHhhCCCEEEEEeCCC------CHH-------HHHHHHHHcCC--CeEEEeCCCcchhhHHHHH-----hCCC
Confidence 4 3444 358889998876 232 23334444444 4677777542 22344444 3776
No 474
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.65 E-value=44 Score=33.00 Aligned_cols=78 Identities=23% Similarity=0.114 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHccc-CccEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE
Q psy10250 13 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEE-KIHMKTILAVGELKTSENIYYASMTAMFAGSDFI 91 (387)
Q Consensus 13 ~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~-~~~~KvIlEt~~L~~~e~i~~a~~~a~~ag~dfv 91 (387)
..|+++|++.||| +|+ +-.-+.+.+.+-+ +..+. ...++++.+=| + |.+++... .+.|+|+|
T Consensus 192 leea~~A~~~GaD---iI~----LDn~~~e~l~~~v----~~~~~~~~~~~ieAsGg-I-t~~ni~~y----a~~GvD~I 254 (273)
T PRK05848 192 LEEAKNAMNAGAD---IVM----CDNMSVEEIKEVV----AYRNANYPHVLLEASGN-I-TLENINAY----AKSGVDAI 254 (273)
T ss_pred HHHHHHHHHcCCC---EEE----ECCCCHHHHHHHH----HHhhccCCCeEEEEECC-C-CHHHHHHH----HHcCCCEE
Confidence 5689999999997 343 2222444444444 33221 11356666655 4 77777654 45699998
Q ss_pred ecCCCCCCCCCCCcccccc
Q psy10250 92 KTSTGKEKTNATIPADLTR 110 (387)
Q Consensus 92 KTSTG~~~~gat~~~~~~~ 110 (387)
=+++=+ ..+ ++.|++|
T Consensus 255 svG~l~--~sa-~~~D~sl 270 (273)
T PRK05848 255 SSGSLI--HQA-TWIDMSM 270 (273)
T ss_pred EeChhh--cCC-Cccceee
Confidence 665533 222 4566665
No 475
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=56.56 E-value=2.4e+02 Score=29.04 Aligned_cols=207 Identities=20% Similarity=0.100 Sum_probs=122.3
Q ss_pred CHHHHHHHHHHhcCCCcHHHHHHHhhhccCCCeEEEEECCccHHHHHHHhhhcCCCCCceEEEEecCCC---CC-CCCHH
Q psy10250 144 TEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFP---SG-QYLLE 219 (387)
Q Consensus 144 T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~~~~aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP---~G-~~~~e 219 (387)
....+.++.+++++. ....+.....+-++.++...++. +-..|+.- -=| .| ..+.+
T Consensus 34 ~~~~l~~~A~~~r~~----------~~~~~~vtyv~n~~in~TN~C~~---------~C~fCaF~-~~~~~~~~y~Ls~e 93 (370)
T COG1060 34 DLEELEELADKARRR----------KRVGDGVTYVVNRNINYTNICVN---------DCTFCAFY-RKPGDPKAYTLSPE 93 (370)
T ss_pred cHHHHHHHHHHHHHh----------hccCCcEEEEEeecCCcchhhcC---------CCCccccc-cCCCCccccccCHH
Confidence 455566666666510 11235566777777777776652 23344431 222 23 34678
Q ss_pred HHHHHHHHHHHCCCCeeeeec----Cch---------hhhc------------CChhHH--------HHHHHHHHHHh--
Q psy10250 220 TRLHEIELLAKQKVDEVDIVI----QRS---------LVLN------------NQWPEL--------FSEVKQMKEKC-- 264 (387)
Q Consensus 220 ~K~~Ea~~Ai~~GAdEID~Vi----n~~---------~lk~------------g~~~~v--------~~Ei~~v~~~~-- 264 (387)
.-..+++.+.+.|++||=+|- +.+ .+++ +...++ .+.+++++++-
T Consensus 94 eI~~~~~~~~~~G~~Evli~gG~~p~~~~~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGld 173 (370)
T COG1060 94 EILEEVREAVKRGITEVLIVGGEHPELSLEYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEVLKRLKEAGLD 173 (370)
T ss_pred HHHHHHHHHHHcCCeEEEEecCcCCCcchHHHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCCCHHHHHHHHHHcCCC
Confidence 888999999999999998872 111 1111 111111 11255555432
Q ss_pred --CC-C--cc----eEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCc-
Q psy10250 265 --GE-K--IH----MKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKI- 334 (387)
Q Consensus 265 --~~-~--~~----lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~- 334 (387)
++ . .. =|+|. -... +.++-.+.-+.|.++|.+| |+|+--.++=|.++...-+..||.+.+.+++-.
T Consensus 174 smpg~~aeil~e~vr~~~~-p~K~-~~~~wle~~~~Ah~lGI~~--tatml~Gh~E~~ed~~~hl~~ir~lQ~~~gg~~~ 249 (370)
T COG1060 174 SMPGGGAEILSEEVRKIHC-PPKK-SPEEWLEIHERAHRLGIPT--TATMLLGHVETREDRIDHLEHIRDLQDETGGFQE 249 (370)
T ss_pred cCcCcceeechHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCCc--cceeEEEecCCHHHHHHHHHHHHHHHHHhCCcEE
Confidence 00 0 00 12333 4445 4466667888999999998 477754556668877776678888888776521
Q ss_pred ----eEe------EeccC--CCHHHHHHHHHHHHHhcCCC--ccCCCcceeecc
Q psy10250 335 ----GLK------PAGGI--STFEDSVRWIYLVLIMLGPD--WLNKDLFRIGAS 374 (387)
Q Consensus 335 ----gIK------asGGI--rt~~~a~~~i~l~~~~~Ga~--w~~~~~~RIGtS 374 (387)
.++ ..... ++..+.+..+.+++-.+|.+ ++.+.|+|.|..
T Consensus 250 fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi~l~~~i~~~~a~w~~~g~~ 303 (370)
T COG1060 250 FIPLRFRPENGPLPAEVVPEASLEQDLKAIALARIFLDNNISNIQASWLRDGVI 303 (370)
T ss_pred EEcccccCCCCCccccCCCCCCHHHHHHHHHHHHHHccCccccccCcccccchH
Confidence 112 22222 78899999999999999942 235777887753
No 476
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=56.31 E-value=66 Score=29.96 Aligned_cols=71 Identities=23% Similarity=0.244 Sum_probs=41.5
Q ss_pred HHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHcccCccEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEec
Q psy10250 14 HEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGELKTSENIYYASMTAMFAGSDFIKT 93 (387)
Q Consensus 14 ~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~~~e~i~~a~~~a~~ag~dfvKT 93 (387)
.+++.+++.||+- ++++.+.+..-+...+.+-++.+++.. .+.++.+. . +.++. ..+.++|+||+++
T Consensus 83 ~~~~~a~~aGad~--I~~~~~~~~~p~~~~~~~~i~~~~~~g----~~~iiv~v--~-t~~ea----~~a~~~G~d~i~~ 149 (219)
T cd04729 83 EEVDALAAAGADI--IALDATDRPRPDGETLAELIKRIHEEY----NCLLMADI--S-TLEEA----LNAAKLGFDIIGT 149 (219)
T ss_pred HHHHHHHHcCCCE--EEEeCCCCCCCCCcCHHHHHHHHHHHh----CCeEEEEC--C-CHHHH----HHHHHcCCCEEEc
Confidence 4899999999993 666654443222223444444444322 25666654 2 55654 3456789999985
Q ss_pred C-CCC
Q psy10250 94 S-TGK 97 (387)
Q Consensus 94 S-TG~ 97 (387)
+ .|+
T Consensus 150 ~~~g~ 154 (219)
T cd04729 150 TLSGY 154 (219)
T ss_pred cCccc
Confidence 3 454
No 477
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=56.08 E-value=80 Score=30.16 Aligned_cols=78 Identities=17% Similarity=0.081 Sum_probs=48.7
Q ss_pred HHHHHHHcCCCeeeeecch----------hHHhcCChhHHHHHHHHHHHHcccCccEEEEEeccCCCCHHHHHHHHHHHH
Q psy10250 15 EIELLAKQKVDEVDIVIQR----------SLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGELKTSENIYYASMTAM 84 (387)
Q Consensus 15 E~~~a~~~GA~EiD~Vin~----------~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~~~e~i~~a~~~a~ 84 (387)
++-.-++.+++.||+-+-. |..+-.+.+.+.+-++++++ ++-.+.+|+=+.. + ++....++.+.
T Consensus 89 ~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~----~-~~~~~la~~l~ 162 (233)
T cd02911 89 NAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAGV----D-VDDEELARLIE 162 (233)
T ss_pred HHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCc----C-cCHHHHHHHHH
Confidence 3333344567999986553 23233357777777888876 3323445554432 2 34556777889
Q ss_pred HcCCCEEecCCCCC
Q psy10250 85 FAGSDFIKTSTGKE 98 (387)
Q Consensus 85 ~ag~dfvKTSTG~~ 98 (387)
++|+|+|--++++.
T Consensus 163 ~aG~d~ihv~~~~~ 176 (233)
T cd02911 163 KAGADIIHVDAMDP 176 (233)
T ss_pred HhCCCEEEECcCCC
Confidence 99999998877764
No 478
>PRK09875 putative hydrolase; Provisional
Probab=56.07 E-value=51 Score=32.75 Aligned_cols=83 Identities=13% Similarity=0.197 Sum_probs=53.1
Q ss_pred CChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCCCC--------CChhh-hHh
Q psy10250 248 NQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTN--------ATIPA-GII 318 (387)
Q Consensus 248 g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~g--------at~~~-~~~ 318 (387)
.+++.+.+|++.+++. + .+.|+|..-..=-......-+++.+.|...| .||||.... .+.+. ...
T Consensus 31 ~~~~~~~~el~~~~~~-G----g~tiVd~T~~g~GRd~~~l~~is~~tgv~Iv-~~TG~y~~~~~p~~~~~~~~e~la~~ 104 (292)
T PRK09875 31 DQYAFICQEMNDLMTR-G----VRNVIEMTNRYMGRNAQFMLDVMRETGINVV-ACTGYYQDAFFPEHVATRSVQELAQE 104 (292)
T ss_pred ccHHHHHHHHHHHHHh-C----CCeEEecCCCccCcCHHHHHHHHHHhCCcEE-EcCcCCCCccCCHHHhcCCHHHHHHH
Confidence 5678899999999864 4 4778886544322346667788999999999 799986432 34443 334
Q ss_pred HHHHHHHHHHHcCCCceE
Q psy10250 319 MCSAIKHFHKLSGKKIGL 336 (387)
Q Consensus 319 m~~~v~~~~~~~~~~~gI 336 (387)
|+++|....+-++-|.||
T Consensus 105 ~i~ei~~Gi~gt~ikaGv 122 (292)
T PRK09875 105 MVDEIEQGIDGTELKAGI 122 (292)
T ss_pred HHHHHHHhhccCCCcccE
Confidence 555555544333333343
No 479
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=55.99 E-value=59 Score=32.47 Aligned_cols=81 Identities=11% Similarity=0.160 Sum_probs=54.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCC--CceEeEeccCCCHHHHHHHHHHHHHh
Q psy10250 281 TSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGK--KIGLKPAGGISTFEDSVRWIYLVLIM 358 (387)
Q Consensus 281 t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~--~~gIKasGGIrt~~~a~~~i~l~~~~ 358 (387)
+.++..+.++.+.+.|.+.+|--.|-+.... +-....++-|+.+++.++. .+.+.+-+|- |.++|+.++...+ .
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~--~~~~~d~~~v~~ir~~~g~~~~l~vDaN~~~-~~~~a~~~~~~l~-~ 214 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGG--EDLREDLARVRAVREAVGPDVDLMVDANGRW-DLAEAIRLARALE-E 214 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcch--HHHHHHHHHHHHHHHhhCCCCEEEEECCCCC-CHHHHHHHHHHhC-c
Confidence 4677777888888999999998665321000 1122334566777788875 5777776665 7999999987654 3
Q ss_pred cCCCccC
Q psy10250 359 LGPDWLN 365 (387)
Q Consensus 359 ~Ga~w~~ 365 (387)
+|..|+.
T Consensus 215 ~~i~~iE 221 (357)
T cd03316 215 YDLFWFE 221 (357)
T ss_pred cCCCeEc
Confidence 5788883
No 480
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=55.78 E-value=38 Score=34.52 Aligned_cols=76 Identities=22% Similarity=0.236 Sum_probs=56.6
Q ss_pred cCCChHHHHHHHHHHHHcC-CCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHH
Q psy10250 278 ELKTSENIYCASMTAMFAG-SDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVL 356 (387)
Q Consensus 278 ~L~t~e~i~~a~~ia~~aG-aDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~ 356 (387)
.|.+.|+|..+++.+.+.| ..|.==+.|.+ .+-.++.+..| |+..++..+ +.+-++=|+-+.+|+.++.
T Consensus 82 ~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~-~~~~~~~i~~~---v~~Vk~~~~--le~c~slG~l~~eq~~~L~---- 151 (335)
T COG0502 82 KLMEVEEILEAAKKAKAAGATRFCMGAAGRG-PGRDMEEVVEA---IKAVKEELG--LEVCASLGMLTEEQAEKLA---- 151 (335)
T ss_pred hcCCHHHHHHHHHHHHHcCCceEEEEEeccC-CCccHHHHHHH---HHHHHHhcC--cHHhhccCCCCHHHHHHHH----
Confidence 4557899999999999999 67887777776 55555554444 444444444 6677788999999999999
Q ss_pred HhcCCCcc
Q psy10250 357 IMLGPDWL 364 (387)
Q Consensus 357 ~~~Ga~w~ 364 (387)
.+|.+..
T Consensus 152 -~aGvd~y 158 (335)
T COG0502 152 -DAGVDRY 158 (335)
T ss_pred -HcChhhe
Confidence 5898644
No 481
>PRK12999 pyruvate carboxylase; Reviewed
Probab=55.53 E-value=4.2e+02 Score=31.50 Aligned_cols=214 Identities=13% Similarity=0.085 Sum_probs=116.3
Q ss_pred hhhHHHHHHh--hccccccc-------CCCCCCHHHHHHHHHHhcCCCcHHHHHHHhhhccCC--CeEEEEEC-------
Q psy10250 121 KNKKSLLLKI--IEFIDLTT-------LSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANV--HTAAVCVY------- 182 (387)
Q Consensus 121 ~~~~~~~~~l--~~~ID~T~-------L~~~~T~~~i~~l~~~A~~~~~~~~~~~~~~~~~~~--~~~aVcV~------- 182 (387)
+.++.|.+.- +.++|-|+ +.--.+.+|....+.... +. |+.++=+.
T Consensus 521 ~~~~~~~~~~~~v~i~DtTlRDg~Qs~~atr~~~~d~l~ia~~l~----------------~~~~g~~siE~~ggatfd~ 584 (1146)
T PRK12999 521 EGFADWLRDQKRVLLTDTTFRDAHQSLLATRVRTKDLLRIAPATA----------------RLLPNLFSLEMWGGATFDV 584 (1146)
T ss_pred HHHHHHHhccCCcEEEECCcchhhhccccccCCHHHHHHHHHHHH----------------HHhCCCCEEEeeCCcchhh
Confidence 6667776654 44677773 345566777777665554 22 33333332
Q ss_pred --------Cc-cHHHHHHHhhhcCCCCCceEEEEecC---CCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCCh
Q psy10250 183 --------PA-RVVDVIKVLDRENARDDVKVASVAAG---FPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQW 250 (387)
Q Consensus 183 --------P~-~v~~a~~~L~~~~~~~~v~v~tVvig---FP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~ 250 (387)
|+ .+...++.+. ++++....-| +..-..+-.+...-++.|++.|.|-+-+-....++
T Consensus 585 ~~r~l~e~p~erl~~~r~~~~------~~~~q~l~Rg~n~vgy~~yp~~v~~~~i~~a~~~Gid~~rifd~lnd~----- 653 (1146)
T PRK12999 585 AYRFLKEDPWERLAELREAAP------NVLFQMLLRGSNAVGYTNYPDNVVRAFVREAAAAGIDVFRIFDSLNWV----- 653 (1146)
T ss_pred hccccCCCHHHHHHHHHHhCC------CCeEEEEecccccccccCCCchHHHHHHHHHHHcCCCEEEEeccCChH-----
Confidence 22 3555666554 3444433211 11223334455556999999999998887655443
Q ss_pred hHHHHHHHHHHHHhCCCcceEEEEe------eccCCChHHHHHHHHHHHHcCCCEE--EcCCCCCCCCCChhhhHhHHHH
Q psy10250 251 PELFSEVKQMKEKCGEKIHMKTILA------VGELKTSENIYCASMTAMFAGSDFI--KTSTGKEKTNATIPAGIIMCSA 322 (387)
Q Consensus 251 ~~v~~Ei~~v~~~~~~~~~lKvIlE------t~~L~t~e~i~~a~~ia~~aGaDfV--KTSTGf~~~gat~~~~~~m~~~ 322 (387)
+.+..=++.++++ +....+-+=.+ +.---+.+-..+.++.+.++|+|-| |-+.|. .+|..+..++.+
T Consensus 654 ~~~~~~i~~vk~~-g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~----l~P~~~~~lv~~ 728 (1146)
T PRK12999 654 ENMRVAIDAVRET-GKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHILAIKDMAGL----LKPAAAYELVSA 728 (1146)
T ss_pred HHHHHHHHHHHHc-CCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCccCC----CCHHHHHHHHHH
Confidence 3344445555543 32122333333 1111245666677888899999954 667775 677766665444
Q ss_pred HHHHHHHcCCCceEeE--eccCCCHHHHHHHHHHHHHhcCCCccCCCcceeeccc
Q psy10250 323 IKHFHKLSGKKIGLKP--AGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS 375 (387)
Q Consensus 323 v~~~~~~~~~~~gIKa--sGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGtSs 375 (387)
+ ++.++-.+.+.. --|.-... ++.-+ ++|++|++....=+|-.+
T Consensus 729 l---k~~~~ipi~~H~Hnt~Gla~an-~laA~-----~aGad~vD~av~glg~~t 774 (1146)
T PRK12999 729 L---KEEVDLPIHLHTHDTSGNGLAT-YLAAA-----EAGVDIVDVAVASMSGLT 774 (1146)
T ss_pred H---HHHcCCeEEEEeCCCCchHHHH-HHHHH-----HhCCCEEEecchhhcCCc
Confidence 4 445443444433 11222222 22223 699998877776665543
No 482
>PRK14847 hypothetical protein; Provisional
Probab=55.32 E-value=2.5e+02 Score=28.69 Aligned_cols=140 Identities=9% Similarity=-0.007 Sum_probs=85.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHH
Q psy10250 215 QYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMF 294 (387)
Q Consensus 215 ~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~ 294 (387)
..+.+.|+.-++...+.|.|+|++-.+.. + +.-.+.+++|++.-.-+...++..=+-.. .+.|.++.+....
T Consensus 50 ~fs~eeKl~IA~~L~~lGVd~IEvG~Pa~----s--~~e~e~ir~I~~~~~~~~~~~i~~~~r~~--~~dId~a~e~~~~ 121 (333)
T PRK14847 50 PMDGARKLRLFEQLVAVGLKEIEVAFPSA----S--QTDFDFVRKLIDERRIPDDVTIEALTQSR--PDLIARTFEALAG 121 (333)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeeCCCC----C--HHHHHHHHHHHHhCCCCCCcEEEEEecCc--HHHHHHHHHHhCC
Confidence 35789999999999999999999987753 1 22245555565432100124444433333 4678888887777
Q ss_pred cCCCEEEcCCCCCC------CCCChhhhHh-HHHHHHHHHHHcC---C---CceEeEeccCCC-HHHHHHHHHHHHHhcC
Q psy10250 295 AGSDFIKTSTGKEK------TNATIPAGII-MCSAIKHFHKLSG---K---KIGLKPAGGIST-FEDSVRWIYLVLIMLG 360 (387)
Q Consensus 295 aGaDfVKTSTGf~~------~gat~~~~~~-m~~~v~~~~~~~~---~---~~gIKasGGIrt-~~~a~~~i~l~~~~~G 360 (387)
++.+.|..+..-+. -+-+.+.+.. +.+.|+..++... + .+-+=+=-.-|+ ++...+++.++...+|
T Consensus 122 ~~~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~EDasRad~dfL~~~~~~a~~~~g 201 (333)
T PRK14847 122 SPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPETFSLAELDFAREVCDAVSAIWG 201 (333)
T ss_pred CCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeecCCCCCHHHHHHHHHHHHHHhC
Confidence 78887777655432 3566665554 4455665555422 1 223333224444 6778888888888889
Q ss_pred CC
Q psy10250 361 PD 362 (387)
Q Consensus 361 a~ 362 (387)
++
T Consensus 202 a~ 203 (333)
T PRK14847 202 PT 203 (333)
T ss_pred CC
Confidence 74
No 483
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=55.05 E-value=31 Score=34.25 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=41.2
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEcCCCCCC-------CCCChh-hhHhHHHHHHHHHHHcCC--CceEeEeccC
Q psy10250 279 LKTSENIYCASMTAMFAGSDFIKTSTGKEK-------TNATIP-AGIIMCSAIKHFHKLSGK--KIGLKPAGGI 342 (387)
Q Consensus 279 L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~-------~gat~~-~~~~m~~~v~~~~~~~~~--~~gIKasGGI 342 (387)
++.+|.|+++-+-=++||+|.|.|+| |+. .|.+.+ ...++..+|++.++..+. +-.+.++|-|
T Consensus 42 ~~~Pe~V~~vH~~yl~AGadiI~TnT-y~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~VaGsi 114 (304)
T PRK09485 42 LENPELIYQVHLDYFRAGADCAITAS-YQATFQGFAARGLSEAEAEELIRRSVELAKEARDEFWAEKPLVAGSV 114 (304)
T ss_pred ccChHHHHHHHHHHHHhCCCEEEeec-cccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEec
Confidence 45667777777778899999999999 432 233322 344566677777766543 1136777766
No 484
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=54.87 E-value=59 Score=34.86 Aligned_cols=73 Identities=22% Similarity=0.217 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHcccCccEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEe
Q psy10250 13 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGELKTSENIYYASMTAMFAGSDFIK 92 (387)
Q Consensus 13 ~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~~L~~~e~i~~a~~~a~~ag~dfvK 92 (387)
..-++..++.|+|- ++++.. .|+-.++.+.++.+++..++ +.+|.=.. .|.++ ++.++++|+|+||
T Consensus 250 ~~r~~~l~~ag~d~--i~iD~~---~g~~~~~~~~i~~ik~~~p~---~~vi~g~v--~t~e~----a~~a~~aGaD~i~ 315 (505)
T PLN02274 250 KERLEHLVKAGVDV--VVLDSS---QGDSIYQLEMIKYIKKTYPE---LDVIGGNV--VTMYQ----AQNLIQAGVDGLR 315 (505)
T ss_pred HHHHHHHHHcCCCE--EEEeCC---CCCcHHHHHHHHHHHHhCCC---CcEEEecC--CCHHH----HHHHHHcCcCEEE
Confidence 35577888899887 556664 67888888899999876543 45665432 35454 4456789999999
Q ss_pred cCCCCCC
Q psy10250 93 TSTGKEK 99 (387)
Q Consensus 93 TSTG~~~ 99 (387)
.+-|-+.
T Consensus 316 vg~g~G~ 322 (505)
T PLN02274 316 VGMGSGS 322 (505)
T ss_pred ECCCCCc
Confidence 9855433
No 485
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=54.81 E-value=43 Score=31.96 Aligned_cols=155 Identities=12% Similarity=0.098 Sum_probs=80.8
Q ss_pred EEEECCccHHHHHHHhhhcCCCCCceEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHH
Q psy10250 178 AVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEV 257 (387)
Q Consensus 178 aVcV~P~~v~~a~~~L~~~~~~~~v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei 257 (387)
.+...|.+++..++...+ ..+.+-=.+ .=| +. -++..++.|||-|= +.+.+- ..+.+-+
T Consensus 45 N~tfg~~~i~~lr~~~~~----~~~dvHLMv-~~P------~~---~i~~~~~~gad~I~--~H~Ea~-----~~~~~~l 103 (223)
T PRK08745 45 NLTIGPMVCQALRKHGIT----APIDVHLMV-EPV------DR---IVPDFADAGATTIS--FHPEAS-----RHVHRTI 103 (223)
T ss_pred CcccCHHHHHHHHhhCCC----CCEEEEecc-CCH------HH---HHHHHHHhCCCEEE--EcccCc-----ccHHHHH
Confidence 445566666666654111 244555552 322 22 25666778999754 344431 2345555
Q ss_pred HHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHHcCCCEEE---cCCCCCCCCCChhhhHhHHHHHHHHHHH---cC
Q psy10250 258 KQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK---TSTGKEKTNATIPAGIIMCSAIKHFHKL---SG 331 (387)
Q Consensus 258 ~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~aGaDfVK---TSTGf~~~gat~~~~~~m~~~v~~~~~~---~~ 331 (387)
+.+++. + +|+=|-..--+..+.+. .+.- -+|+|= .-.||+...--++ +++.|+.+++. .+
T Consensus 104 ~~Ir~~-g----~k~GlalnP~T~~~~i~---~~l~--~vD~VlvMtV~PGf~GQ~fi~~----~l~KI~~l~~~~~~~~ 169 (223)
T PRK08745 104 QLIKSH-G----CQAGLVLNPATPVDILD---WVLP--ELDLVLVMSVNPGFGGQAFIPS----ALDKLRAIRKKIDALG 169 (223)
T ss_pred HHHHHC-C----CceeEEeCCCCCHHHHH---HHHh--hcCEEEEEEECCCCCCccccHH----HHHHHHHHHHHHHhcC
Confidence 666653 2 34444333332233332 2222 455442 3458864433332 33455555544 33
Q ss_pred CCceEeEeccCCCHHHHHHHHHHHHHhcCCCccCCCcceeec
Q psy10250 332 KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGA 373 (387)
Q Consensus 332 ~~~gIKasGGIrt~~~a~~~i~l~~~~~Ga~w~~~~~~RIGt 373 (387)
..+.|=+-|||+ .+++..+. ++|+|++-.|..-++.
T Consensus 170 ~~~~IeVDGGI~-~eti~~l~-----~aGaDi~V~GSaiF~~ 205 (223)
T PRK08745 170 KPIRLEIDGGVK-ADNIGAIA-----AAGADTFVAGSAIFNA 205 (223)
T ss_pred CCeeEEEECCCC-HHHHHHHH-----HcCCCEEEEChhhhCC
Confidence 457799999998 77888888 5999865444444444
No 486
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=54.80 E-value=2.6e+02 Score=28.77 Aligned_cols=152 Identities=13% Similarity=0.061 Sum_probs=97.0
Q ss_pred CceEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeecc-C
Q psy10250 201 DVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGE-L 279 (387)
Q Consensus 201 ~v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~-L 279 (387)
.+++-+. .++..+....+.-..+++++++.|.+-+=+=+ + ..+.+.-.+-+++++++.++ -+++++.... +
T Consensus 145 ~v~~y~~-~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kikv--g---~~~~~~di~~v~avRe~~G~--~~~l~vDaN~~w 216 (385)
T cd03326 145 RVPVYAA-GGYYYPGDDLGRLRDEMRRYLDRGYTVVKIKI--G---GAPLDEDLRRIEAALDVLGD--GARLAVDANGRF 216 (385)
T ss_pred eEEEEEe-cCCCCCCCCHHHHHHHHHHHHHCCCCEEEEeC--C---CCCHHHHHHHHHHHHHhcCC--CCeEEEECCCCC
Confidence 4555444 35544444556667889999999988876632 1 12334445567777777765 4788998855 5
Q ss_pred CChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEecc--CCCHHHHHHHHHHHHH
Q psy10250 280 KTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGG--ISTFEDSVRWIYLVLI 357 (387)
Q Consensus 280 ~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGG--Irt~~~a~~~i~l~~~ 357 (387)
+.++-.+.++...+.+..|+--+.-. -.+ +..+.+++. +.+=.++| +.|..++..++.
T Consensus 217 -~~~~A~~~~~~l~~~~~~~iEeP~~~----~d~-------~~~~~L~~~----~~iPIa~gEs~~~~~~~~~li~---- 276 (385)
T cd03326 217 -DLETAIAYAKALAPYGLRWYEEPGDP----LDY-------ALQAELADH----YDGPIATGENLFSLQDARNLLR---- 276 (385)
T ss_pred -CHHHHHHHHHHhhCcCCCEEECCCCc----cCH-------HHHHHHHhh----CCCCEEcCCCcCCHHHHHHHHH----
Confidence 56777777777788899999866521 112 233333333 33445554 568899999984
Q ss_pred hcCC-----CccCCCcceee-ccchHHHHH
Q psy10250 358 MLGP-----DWLNKDLFRIG-ASSLLNNIL 381 (387)
Q Consensus 358 ~~Ga-----~w~~~~~~RIG-tSs~~~il~ 381 (387)
.|+ ++++++..|+| -+..+++..
T Consensus 277 -~~a~~~~~div~~d~~~~GGit~~~kia~ 305 (385)
T cd03326 277 -YGGMRPDRDVLQFDPGLSYGLPEYLRMLD 305 (385)
T ss_pred -hCCccccCCEEEeCchhhCCHHHHHHHHH
Confidence 554 78899999986 455555544
No 487
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=54.79 E-value=2e+02 Score=28.29 Aligned_cols=99 Identities=13% Similarity=0.031 Sum_probs=61.4
Q ss_pred ceEEEEecCC-CCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCC
Q psy10250 202 VKVASVAAGF-PSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELK 280 (387)
Q Consensus 202 v~v~tVvigF-P~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~ 280 (387)
+-.+.+ .=| +.|.-..+.=...+++.++.|++-|=+.=..|..-+=..++-.+=++.+++.+.+ .+.||.=++-.+
T Consensus 4 v~~a~~-TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g--~~pvi~gv~~~~ 80 (294)
T TIGR02313 4 SIAPLI-TPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAG--RIPFAPGTGALN 80 (294)
T ss_pred eeeeee-CCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCC--CCcEEEECCcch
Confidence 333444 445 4577777777788888888888875443334433333334444444555555554 467888888775
Q ss_pred ChHHHHHHHHHHHHcCCCEEEcCC
Q psy10250 281 TSENIYCASMTAMFAGSDFIKTST 304 (387)
Q Consensus 281 t~e~i~~a~~ia~~aGaDfVKTST 304 (387)
+++ -.+.++.|.+.|+|.+=-.+
T Consensus 81 t~~-ai~~a~~A~~~Gad~v~v~p 103 (294)
T TIGR02313 81 HDE-TLELTKFAEEAGADAAMVIV 103 (294)
T ss_pred HHH-HHHHHHHHHHcCCCEEEEcC
Confidence 544 45677888888998765444
No 488
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=54.64 E-value=67 Score=32.54 Aligned_cols=72 Identities=22% Similarity=0.296 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHcCC--CeeeeecchhHHhcCChhHHHHHHHHHHHHcccCccEEEEE-eccCCCCHHHHHHHHHHHHHc
Q psy10250 10 ETRLHEIELLAKQKV--DEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTIL-AVGELKTSENIYYASMTAMFA 86 (387)
Q Consensus 10 ~~K~~E~~~a~~~GA--~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIl-Et~~L~~~e~i~~a~~~a~~a 86 (387)
.-...++++.++.|+ |- ++++... |+-..+.+=|+.+++..++ +-||. |++ |.++. +.+.++
T Consensus 96 ~~~~~~~~~Lv~ag~~~d~--i~iD~a~---gh~~~~~e~I~~ir~~~p~---~~vi~g~V~---t~e~a----~~l~~a 160 (326)
T PRK05458 96 DDEYDFVDQLAAEGLTPEY--ITIDIAH---GHSDSVINMIQHIKKHLPE---TFVIAGNVG---TPEAV----RELENA 160 (326)
T ss_pred HHHHHHHHHHHhcCCCCCE--EEEECCC---CchHHHHHHHHHHHhhCCC---CeEEEEecC---CHHHH----HHHHHc
Confidence 345678888899855 75 4556554 7888888889999876653 34666 554 54543 455789
Q ss_pred CCCEEecCCC
Q psy10250 87 GSDFIKTSTG 96 (387)
Q Consensus 87 g~dfvKTSTG 96 (387)
|+|+++-+-|
T Consensus 161 Gad~i~vg~~ 170 (326)
T PRK05458 161 GADATKVGIG 170 (326)
T ss_pred CcCEEEECCC
Confidence 9999996644
No 489
>PRK12346 transaldolase A; Provisional
Probab=54.64 E-value=2.5e+02 Score=28.48 Aligned_cols=124 Identities=17% Similarity=0.180 Sum_probs=72.7
Q ss_pred CCCHHHHHHHHHHHHHC----CCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHH
Q psy10250 215 QYLLETRLHEIELLAKQ----KVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASM 290 (387)
Q Consensus 215 ~~~~e~K~~Ea~~Ai~~----GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ 290 (387)
...++.-+.+++..++. |.+--.++|-+..- |+- |+++..+...+..+-+-+ .+ +.++ +.
T Consensus 101 a~d~e~~i~~A~~l~~l~~~~gi~~~~i~IKIPaT----~eG----i~A~~~L~~~GI~~n~Tl---iF-S~~Q----a~ 164 (316)
T PRK12346 101 SFDREKSIEKARHLVDLYQQQGIDKSRILIKLAST----WEG----IRAAEELEKEGINCNLTL---LF-SFAQ----AR 164 (316)
T ss_pred ccCHHHHHHHHHHHHHHhhhcCCCCCcEEEEeCCC----HHH----HHHHHHHHHCCCceeEEE---ec-CHHH----HH
Confidence 34678888888888775 56655677766643 333 455555443333333222 34 4443 35
Q ss_pred HHHHcCCCEEEcCCCCCC-----------CCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhc
Q psy10250 291 TAMFAGSDFIKTSTGKEK-----------TNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIML 359 (387)
Q Consensus 291 ia~~aGaDfVKTSTGf~~-----------~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~ 359 (387)
.|.+||++||----|.-. ..+.-......+..|..+.+..+.+.+|.++ .+|+.+|... .+
T Consensus 165 ~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~A-SfRn~~qi~a-------la 236 (316)
T PRK12346 165 ACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHRYETIVMGA-SFRRTEQILA-------LA 236 (316)
T ss_pred HHHHcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHcCCCcEEEec-ccCCHHHHHH-------Hh
Confidence 678899999854444210 0011122223334566666666778889886 6899999983 26
Q ss_pred CCC
Q psy10250 360 GPD 362 (387)
Q Consensus 360 Ga~ 362 (387)
|++
T Consensus 237 G~d 239 (316)
T PRK12346 237 GCD 239 (316)
T ss_pred CCC
Confidence 884
No 490
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=54.62 E-value=57 Score=32.65 Aligned_cols=75 Identities=21% Similarity=0.341 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCCCeeeeecchhHHhcCChhHHHHHHHHHHHHcccCccEEEEEecc-CCCCHHHHHHHHHHHHHcCCCEE
Q psy10250 13 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVG-ELKTSENIYYASMTAMFAGSDFI 91 (387)
Q Consensus 13 ~~E~~~a~~~GA~EiD~Vin~~~lk~g~~~~v~~ei~~v~~~~~~~~~~KvIlEt~-~L~~~e~i~~a~~~a~~ag~dfv 91 (387)
..|+++|++.|||- + +++ +++ -+|+++.++..++ +++||.+ =. +.+.+..- ...|+|||
T Consensus 218 leea~ea~~~gaDi---I-----~LD-n~s--~e~~~~av~~~~~----~~~ieaSGGI-~~~ni~~y----A~tGVD~I 277 (296)
T PRK09016 218 LDELDQALKAGADI---I-----MLD-NFT--TEQMREAVKRTNG----RALLEVSGNV-TLETLREF----AETGVDFI 277 (296)
T ss_pred HHHHHHHHHcCCCE---E-----EeC-CCC--hHHHHHHHHhhcC----CeEEEEECCC-CHHHHHHH----HhcCCCEE
Confidence 57899999999954 3 122 223 2777777776543 4566664 34 66766544 45699998
Q ss_pred ecCCCCCCCCCCCcccccc
Q psy10250 92 KTSTGKEKTNATIPADLTR 110 (387)
Q Consensus 92 KTSTG~~~~gat~~~~~~~ 110 (387)
-||. - .+..++.|.+|
T Consensus 278 s~ga--l-thsa~~lD~sl 293 (296)
T PRK09016 278 SVGA--L-TKHVQALDLSM 293 (296)
T ss_pred EeCc--c-ccCCCccceee
Confidence 5544 3 23335667766
No 491
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=54.35 E-value=1.1e+02 Score=30.68 Aligned_cols=82 Identities=18% Similarity=0.059 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeeeeec----------chhHHhcCChhHHHHHHHHHHHHcc-cCccEEEEEeccCCCCHH-
Q psy10250 7 YLLETRLHEIELLAKQKVDEVDIVI----------QRSLVLNNQWPELFSEVKQMKEKCE-EKIHMKTILAVGELKTSE- 74 (387)
Q Consensus 7 ~~~~~K~~E~~~a~~~GA~EiD~Vi----------n~~~lk~g~~~~v~~ei~~v~~~~~-~~~~~KvIlEt~~L~~~e- 74 (387)
+..+.=..-++.+.+.|+|+||+=+ ..|+-+-.+.+.+.+=+++++++.+ -.+.||+=+ |. ++++
T Consensus 76 sdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRl--G~-d~~~~ 152 (323)
T COG0042 76 SDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRL--GW-DDDDI 152 (323)
T ss_pred CCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEec--cc-Ccccc
Confidence 3344445556777789999999732 2456666788999999999999885 235556554 43 1222
Q ss_pred HHHHHHHHHHHcCCCEE
Q psy10250 75 NIYYASMTAMFAGSDFI 91 (387)
Q Consensus 75 ~i~~a~~~a~~ag~dfv 91 (387)
.-...++++.++|++.+
T Consensus 153 ~~~~ia~~~~~~g~~~l 169 (323)
T COG0042 153 LALEIARILEDAGADAL 169 (323)
T ss_pred cHHHHHHHHHhcCCCEE
Confidence 23456778899999986
No 492
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=54.04 E-value=1e+02 Score=30.00 Aligned_cols=79 Identities=18% Similarity=0.178 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHHcCCCeeeeec---chhHHhcCChhHHHHHHHHH---HHHcccCccEEEEEeccCCCCHHHHHHHHH
Q psy10250 8 LLETRLHEIELLAKQKVDEVDIVI---QRSLVLNNQWPELFSEVKQM---KEKCEEKIHMKTILAVGELKTSENIYYASM 81 (387)
Q Consensus 8 ~~~~K~~E~~~a~~~GA~EiD~Vi---n~~~lk~g~~~~v~~ei~~v---~~~~~~~~~~KvIlEt~~L~~~e~i~~a~~ 81 (387)
..+.=+..+++.++.|||-||+=. |.+. +.-...+|+..+ ++.......+-+-|.|. +.+-+ +
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~----~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~---~~~v~----e 90 (257)
T cd00739 22 SLDKAVAHAEKMIAEGADIIDIGGESTRPGA----DPVSVEEELERVIPVLEALRGELDVLISVDTF---RAEVA----R 90 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCC----CCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCC---CHHHH----H
Confidence 456667789999999999999853 2221 111234455554 33333211233566663 33433 4
Q ss_pred HHHHcCCCEEecCCCC
Q psy10250 82 TAMFAGSDFIKTSTGK 97 (387)
Q Consensus 82 ~a~~ag~dfvKTSTG~ 97 (387)
.|.++|+|+|..-+|+
T Consensus 91 ~al~~G~~iINdisg~ 106 (257)
T cd00739 91 AALEAGADIINDVSGG 106 (257)
T ss_pred HHHHhCCCEEEeCCCC
Confidence 4566699999988887
No 493
>PRK07534 methionine synthase I; Validated
Probab=53.95 E-value=30 Score=35.05 Aligned_cols=63 Identities=22% Similarity=0.143 Sum_probs=41.2
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEcCCCCCCC-------CCChhhhHhHHHHHHHHHHHcCC-CceEeEeccC
Q psy10250 279 LKTSENIYCASMTAMFAGSDFIKTSTGKEKT-------NATIPAGIIMCSAIKHFHKLSGK-KIGLKPAGGI 342 (387)
Q Consensus 279 L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~~-------gat~~~~~~m~~~v~~~~~~~~~-~~gIKasGGI 342 (387)
++.++.|...-+--.+||||.|.|+| |+.. +..-+...++..+|++.++.... ...+.++|.|
T Consensus 41 i~~Pe~V~~vH~~Yl~AGAdiI~TnT-y~as~~~l~~~~~~~~~~~l~~~av~lAr~a~~~~~~~~~VaGsI 111 (336)
T PRK07534 41 EDHPDNITALHQGFVDAGSDIILTNS-FGGTAARLKLHDAQDRVHELNRAAAEIAREVADKAGRKVIVAGSV 111 (336)
T ss_pred ccCHHHHHHHHHHHHHhcCCEEEecC-cccCHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence 45678788888888999999999999 5422 11112334566677777776532 1245677765
No 494
>PLN02363 phosphoribosylanthranilate isomerase
Probab=53.89 E-value=30 Score=33.81 Aligned_cols=79 Identities=13% Similarity=0.158 Sum_probs=48.8
Q ss_pred ceEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHH-HHHHHHHHHHhCCCcceEEEEeeccCC
Q psy10250 202 VKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPEL-FSEVKQMKEKCGEKIHMKTILAVGELK 280 (387)
Q Consensus 202 v~v~tVvigFP~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v-~~Ei~~v~~~~~~~~~lKvIlEt~~L~ 280 (387)
+|||.+ ....+++.|.+.|||-|=||.-- +...+| .++.+++.+.+++ ..+|.+--+..-
T Consensus 49 VKICGi------------t~~eda~~a~~~GaD~iGfIf~~-----~SpR~Vs~e~a~~I~~~l~~-~~~~~VgVfv~~- 109 (256)
T PLN02363 49 VKMCGI------------TSARDAAMAVEAGADFIGMILWP-----KSKRSISLSVAKEISQVARE-GGAKPVGVFVDD- 109 (256)
T ss_pred EEECCC------------CcHHHHHHHHHcCCCEEEEecCC-----CCCCcCCHHHHHHHHHhccc-cCccEEEEEeCC-
Confidence 777777 35678999999999999998422 223334 4556666666643 223322222222
Q ss_pred ChHHHHHHHHHHHHcCCCEEEc
Q psy10250 281 TSENIYCASMTAMFAGSDFIKT 302 (387)
Q Consensus 281 t~e~i~~a~~ia~~aGaDfVKT 302 (387)
+.++| .+++.+.|.|+|+=
T Consensus 110 ~~~~I---~~~~~~~~ld~VQL 128 (256)
T PLN02363 110 DANTI---LRAADSSDLELVQL 128 (256)
T ss_pred CHHHH---HHHHHhcCCCEEEE
Confidence 34555 45567889999984
No 495
>PLN02417 dihydrodipicolinate synthase
Probab=53.71 E-value=2.2e+02 Score=27.71 Aligned_cols=102 Identities=14% Similarity=0.102 Sum_probs=68.3
Q ss_pred CceEEEEecCC-CCCCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccC
Q psy10250 201 DVKVASVAAGF-PSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGEL 279 (387)
Q Consensus 201 ~v~v~tVvigF-P~G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L 279 (387)
++-++.+ .=| +.|.-..+.=...+++.++.|++-|=+-=..|..-+=..++-.+=++.+++.+++ .++||.=++-.
T Consensus 4 Gv~~a~~-TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~--~~pvi~gv~~~ 80 (280)
T PLN02417 4 RLITAIK-TPYLPDGRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGG--KIKVIGNTGSN 80 (280)
T ss_pred ceeeeee-CCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCC--CCcEEEECCCc
Confidence 4555555 566 5677778888888999999999986544444444433344444444555555543 57889888888
Q ss_pred CChHHHHHHHHHHHHcCCCEEEcCCCC
Q psy10250 280 KTSENIYCASMTAMFAGSDFIKTSTGK 306 (387)
Q Consensus 280 ~t~e~i~~a~~ia~~aGaDfVKTSTGf 306 (387)
++ ++..+.++.|.++|+|.|=-.+-|
T Consensus 81 ~t-~~~i~~a~~a~~~Gadav~~~~P~ 106 (280)
T PLN02417 81 ST-REAIHATEQGFAVGMHAALHINPY 106 (280)
T ss_pred cH-HHHHHHHHHHHHcCCCEEEEcCCc
Confidence 55 455677788999999977665543
No 496
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=53.66 E-value=2e+02 Score=27.20 Aligned_cols=128 Identities=14% Similarity=0.092 Sum_probs=69.7
Q ss_pred HHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEee----c----cC-CCh-------HHHH
Q psy10250 223 HEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAV----G----EL-KTS-------ENIY 286 (387)
Q Consensus 223 ~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt----~----~L-~t~-------e~i~ 286 (387)
...+.+.+.|.+-|++..+.......++ -..+++++++.... .-+++.-=. + .+ .++ +.+.
T Consensus 17 ~~l~~~~~~G~~~vEl~~~~~~~~~~~~--~~~~~~~l~~~~~~-~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 93 (275)
T PRK09856 17 HAFRDASELGYDGIEIWGGRPHAFAPDL--KAGGIKQIKALAQT-YQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIK 93 (275)
T ss_pred HHHHHHHHcCCCEEEEccCCcccccccc--CchHHHHHHHHHHH-cCCeEEEecCcccCcCccccCCCHHHHHHHHHHHH
Confidence 3456677889999998654332111111 12355666655543 234543211 1 11 121 3455
Q ss_pred HHHHHHHHcCCCEEEcCCCCCCCCCChh-hhHhHHHHHHHHHHHc---CCCceEeEecc-----CCCHHHHHHHHH
Q psy10250 287 CASMTAMFAGSDFIKTSTGKEKTNATIP-AGIIMCSAIKHFHKLS---GKKIGLKPAGG-----ISTFEDSVRWIY 353 (387)
Q Consensus 287 ~a~~ia~~aGaDfVKTSTGf~~~gat~~-~~~~m~~~v~~~~~~~---~~~~gIKasGG-----Irt~~~a~~~i~ 353 (387)
++++.|...|+..|-+..|......+.+ ..+.+.+.++.+.+.. |=++.+..-+. +.|.+++..++.
T Consensus 94 ~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~~~~~~~~~t~~~~~~l~~ 169 (275)
T PRK09856 94 LAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILEPLTPYESNVVCNANDVLHALA 169 (275)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEecCCCCcccccCCHHHHHHHHH
Confidence 6788999999999999877533222332 2233444555544433 33444444231 567888888886
No 497
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=53.13 E-value=2.6e+02 Score=28.25 Aligned_cols=141 Identities=14% Similarity=0.141 Sum_probs=94.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHHH
Q psy10250 215 QYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMF 294 (387)
Q Consensus 215 ~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~~ 294 (387)
..+.+.-..+++...+.|.+-+=+-+-.+ +.+.-.+-++++++++++ -++++++..--=|.++-.+.++...+
T Consensus 141 ~~~~e~~~~~~~~~~~~G~~~~Klk~g~~-----~~~~d~~~v~avRe~~g~--~~~l~iDan~~~~~~~A~~~~~~l~~ 213 (372)
T COG4948 141 EDPEEMAAEAARALVELGFKALKLKVGVG-----DGDEDLERVRALREAVGD--DVRLMVDANGGWTLEEAIRLARALEE 213 (372)
T ss_pred CCCHHHHHHHHHHHHhcCCceEEecCCCC-----chHHHHHHHHHHHHHhCC--CceEEEeCCCCcCHHHHHHHHHHhcc
Confidence 45666666677777778998876654443 223566778888998885 48999998655577767778888888
Q ss_pred cCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCCCHHHHHHHHHHHHHhcC-CCccCCCcceeec
Q psy10250 295 AGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG-PDWLNKDLFRIGA 373 (387)
Q Consensus 295 aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIrt~~~a~~~i~l~~~~~G-a~w~~~~~~RIGt 373 (387)
.+..|+--++.- ++. +..+.+++.+ .+.|=+-==+.|..++.++++ .| ++.++++..|+|.
T Consensus 214 ~~l~~iEeP~~~-------~d~----~~~~~l~~~~--~~PIa~gEs~~~~~~~~~l~~-----~~a~div~~d~~~~GG 275 (372)
T COG4948 214 YGLEWIEEPLPP-------DDL----EGLRELRAAT--STPIAAGESVYTRWDFRRLLE-----AGAVDIVQPDLARVGG 275 (372)
T ss_pred cCcceEECCCCc-------cCH----HHHHHHHhcC--CCCEecCcccccHHHHHHHHH-----cCCCCeecCCccccCC
Confidence 889999876642 211 2333333322 233333224689999999994 66 7888999999886
Q ss_pred c-chHHHH
Q psy10250 374 S-SLLNNI 380 (387)
Q Consensus 374 S-s~~~il 380 (387)
- ..++|.
T Consensus 276 ite~~kia 283 (372)
T COG4948 276 ITEALKIA 283 (372)
T ss_pred HHHHHHHH
Confidence 4 444444
No 498
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=52.97 E-value=2e+02 Score=28.50 Aligned_cols=88 Identities=15% Similarity=0.102 Sum_probs=60.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCCeeeeecCchhhhcCChhHHHHHHHHHHHHhCCCcceEEEEeeccCCChHHHHHHHHHHH
Q psy10250 214 GQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAM 293 (387)
Q Consensus 214 G~~~~e~K~~Ea~~Ai~~GAdEID~Vin~~~lk~g~~~~v~~Ei~~v~~~~~~~~~lKvIlEt~~L~t~e~i~~a~~ia~ 293 (387)
|.-..+.=...++..++.|++-|=+-=..|..-+=..++-.+=++.+++.+++ .+.||.=++-.++ ++-.+.++.|.
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g--rvpvi~Gv~~~~t-~~ai~~a~~A~ 100 (309)
T cd00952 24 DTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAG--RVPVFVGATTLNT-RDTIARTRALL 100 (309)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCC--CCCEEEEeccCCH-HHHHHHHHHHH
Confidence 66677777788999999999986443344444433344444445556666654 4789999998865 55667889999
Q ss_pred HcCCCEEEcCC
Q psy10250 294 FAGSDFIKTST 304 (387)
Q Consensus 294 ~aGaDfVKTST 304 (387)
++|||.|=-.+
T Consensus 101 ~~Gad~vlv~~ 111 (309)
T cd00952 101 DLGADGTMLGR 111 (309)
T ss_pred HhCCCEEEECC
Confidence 99999665443
No 499
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=52.93 E-value=71 Score=34.99 Aligned_cols=76 Identities=22% Similarity=0.156 Sum_probs=53.1
Q ss_pred eeccCCChHHHHHHHHHHHHcCCCEEEcCCCCCC-------CCCChhhhHhHHHHHHHHHHHcCCCceEeEeccCC----
Q psy10250 275 AVGELKTSENIYCASMTAMFAGSDFIKTSTGKEK-------TNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGIS---- 343 (387)
Q Consensus 275 Et~~L~t~e~i~~a~~ia~~aGaDfVKTSTGf~~-------~gat~~~~~~m~~~v~~~~~~~~~~~gIKasGGIr---- 343 (387)
|.-.|..+|.|.+.-+--.+||||.|.|+| |.. .|.+-+...++..++++.++.... .+.++|.|-
T Consensus 35 ~~~~l~~Pe~i~~vH~~yl~AGAdvi~TnT-y~as~~~l~~~g~~~~~~~l~~~av~lAr~a~~~--~~~VagsiGP~g~ 111 (612)
T PRK08645 35 EELNLSHPELILRIHREYIEAGADVIQTNT-FGANRIKLKRYGLEDKVKEINRAAVRLAREAAGD--DVYVAGTIGPIGG 111 (612)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCEEecCc-ccccHHHHHhcCchHHHHHHHHHHHHHHHHHhcC--CCeEEEeCCCCCC
Confidence 555676778888888888899999999999 422 244444556677788888877653 356777663
Q ss_pred -------CHHHHHHHHH
Q psy10250 344 -------TFEDSVRWIY 353 (387)
Q Consensus 344 -------t~~~a~~~i~ 353 (387)
|.+++..++.
T Consensus 112 ~~~~~~~~~~~~~~~~~ 128 (612)
T PRK08645 112 RGPLGDISLEEIRREFR 128 (612)
T ss_pred CCCCCCCCHHHHHHHHH
Confidence 5677777653
No 500
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=52.41 E-value=1.6e+02 Score=27.93 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEcCCCCCCCCCChhhhHhHHHHHHHHHHHcCCCceEeE-eccCCCHHHHHHHHHHHHHhc
Q psy10250 281 TSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKP-AGGISTFEDSVRWIYLVLIML 359 (387)
Q Consensus 281 t~e~i~~a~~ia~~aGaDfVKTSTGf~~~gat~~~~~~m~~~v~~~~~~~~~~~gIKa-sGGIrt~~~a~~~i~l~~~~~ 359 (387)
+.++....++.+.++|...+--.= . |+.. .+.|+.+++..+.+-++.+ +|.|-|.+|+...+ .+
T Consensus 23 ~~~~a~~~~~al~~~Gi~~iEit~--~----~~~a----~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~-----~a 87 (213)
T PRK06552 23 SKEEALKISLAVIKGGIKAIEVTY--T----NPFA----SEVIKELVELYKDDPEVLIGAGTVLDAVTARLAI-----LA 87 (213)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEC--C----CccH----HHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHH-----Hc
Confidence 678899999999999999987321 1 1211 2467777776653212333 79999999999999 59
Q ss_pred CCCcc-CCCc
Q psy10250 360 GPDWL-NKDL 368 (387)
Q Consensus 360 Ga~w~-~~~~ 368 (387)
|++++ +|+.
T Consensus 88 GA~FivsP~~ 97 (213)
T PRK06552 88 GAQFIVSPSF 97 (213)
T ss_pred CCCEEECCCC
Confidence 99755 4443
Done!