RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10250
(387 letters)
>gnl|CDD|188646 cd00959, DeoC, 2-deoxyribose-5-phosphate aldolase (DERA) of the
DeoC family. 2-deoxyribose-5-phosphate aldolase (DERA)
of the DeoC family. DERA belongs to the class I
aldolases and catalyzes a reversible aldol reaction
between acetaldehyde and glyceraldehyde 3-phosphate to
generate 2-deoxyribose 5-phosphate. DERA is unique in
catalyzing the aldol reaction between two aldehydes, and
its broad substrate specificity confers considerable
utility as a biocatalyst, offering an environmentally
benign alternative to chiral transition metal catalysis
of the asymmetric aldol reaction.
Length = 203
Score = 188 bits (480), Expect = 2e-58
Identities = 75/245 (30%), Positives = 103/245 (42%), Gaps = 42/245 (17%)
Query: 130 IIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDV 189
+ ID T L D TE + L +A + AAVCV P V
Sbjct: 1 LASLIDHTLLKPDATEEDIRKLCDEAKEY----------------GFAAVCVNPCFVPLA 44
Query: 190 IKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQ 249
+ L VKV +V GFP G E ++ E DE+D+VI + +
Sbjct: 45 REAL----KGSGVKVCTVI-GFPLGATTTEVKVAEAREAIADGADEIDMVINIGALKSGD 99
Query: 250 WPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKT 309
+ ++ E+ + E CG +K IL G L T E I A A+ AG+DFIKTSTG
Sbjct: 100 YEAVYEEIAAVVEACGGA-PLKVILETGLL-TDEEIIKACEIAIEAGADFIKTSTGFGPG 157
Query: 310 NATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLF 369
AT+ +M A+ ++G+K AGGI T ED++ I G
Sbjct: 158 GATVEDVKLMKEAVG-------GRVGVKAAGGIRTLEDALAM-----IEAG-------AT 198
Query: 370 RIGAS 374
RIG S
Sbjct: 199 RIGTS 203
Score = 106 bits (267), Expect = 4e-27
Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIH 60
GFP G E ++ E DE+D+VI + + + ++ E+ + E C
Sbjct: 60 GFPLGATTTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGA-P 118
Query: 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPA 106
+K IL G L T E I A A+ AG+DFIKTSTG AT+
Sbjct: 119 LKVILETGLL-TDEEIIKACEIAIEAGADFIKTSTGFGPGGATVED 163
>gnl|CDD|235387 PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional.
Length = 257
Score = 176 bits (449), Expect = 3e-53
Identities = 96/259 (37%), Positives = 138/259 (53%), Gaps = 20/259 (7%)
Query: 128 LKIIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVV 187
L+ + +DLTTL+ DDT+ V L +A P+ +TAA+C+YP R +
Sbjct: 8 LRALSLMDLTTLNDDDTDEKVIALCHQAKTPVG--------------NTAAICIYP-RFI 52
Query: 188 DVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQ-RSLVL 246
+ + RE ++++A+V FP G ++ L E DEVD+V R+L+
Sbjct: 53 PIARKTLREQGTPEIRIATVT-NFPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALMA 111
Query: 247 NNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGK 306
N+ F VK KE C + +K I+ GELK I AS A+ AG+DFIKTSTGK
Sbjct: 112 GNE-QVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTSTGK 170
Query: 307 EKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNK 366
NAT+ A IM I+ K +G KPAGG+ T ED+ +++ L +LG DW +
Sbjct: 171 VPVNATLEAARIMLEVIR--DMGVAKTVGFKPAGGVRTAEDAAQYLALADEILGADWADA 228
Query: 367 DLFRIGASSLLNNILQELE 385
FR GASSLL ++L+ L
Sbjct: 229 RHFRFGASSLLASLLKTLG 247
Score = 75.0 bits (185), Expect = 2e-15
Identities = 44/106 (41%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 2 FPSGQYLLETRLHEIELLAKQKVDEVDIVIQ-RSLVLNNQWPELFSEVKQMKEKCEEKIH 60
FP G ++ L E DEVD+V R+L+ N+ F VK KE C +
Sbjct: 75 FPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALMAGNE-QVGFELVKACKEACAANVL 133
Query: 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPA 106
+K I+ GELK I AS A+ AG+DFIKTSTGK NAT+ A
Sbjct: 134 LKVIIETGELKDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEA 179
>gnl|CDD|223351 COG0274, DeoC, Deoxyribose-phosphate aldolase [Nucleotide transport
and metabolism].
Length = 228
Score = 172 bits (437), Expect = 1e-51
Identities = 75/260 (28%), Positives = 112/260 (43%), Gaps = 41/260 (15%)
Query: 128 LKIIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVV 187
+++ + ID T L D TE + L +A + AAVCV P+ V
Sbjct: 6 MQLAKLIDHTLLKPDATEEDIARLCAEAKEY----------------GFAAVCVNPSYVP 49
Query: 188 DVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLN 247
+ L V+V +V GFP G + E + DE+D+VI + +
Sbjct: 50 LAKEALK---GSTVVRVCTVI-GFPLGANTTAVKAAEAREAIENGADEIDMVINIGALKS 105
Query: 248 NQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKE 307
W + E++ + E C + + +K IL G L E A A+ AG+DF+KTSTG
Sbjct: 106 GNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRK-ACEIAIEAGADFVKTSTGFS 164
Query: 308 KTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKD 367
AT+ +M + G ++G+K +GGI T ED+ I G
Sbjct: 165 AGGATVEDVKLMKETV-------GGRVGVKASGGIRTAEDAKAM-----IEAG------- 205
Query: 368 LFRIGASSLLNNILQELEAL 387
RIG SS + IL+ LE L
Sbjct: 206 ATRIGTSSGV-AILEGLEHL 224
Score = 99.2 bits (248), Expect = 3e-24
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Query: 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIH 60
GFP G + E + DE+D+VI + + W + E++ + E C + +
Sbjct: 68 GFPLGANTTAVKAAEAREAIENGADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVV 127
Query: 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPA 106
+K IL G L E A A+ AG+DF+KTSTG AT+
Sbjct: 128 LKVILETGLLTDEE-KRKACEIAIEAGADFVKTSTGFSAGGATVED 172
>gnl|CDD|188634 cd00945, Aldolase_Class_I, Class I aldolases. Class I aldolases.
The class I aldolases use an active-site lysine which
stabilizes a reaction intermediates via Schiff base
formation, and have TIM beta/alpha barrel fold. The
members of this family include
2-keto-3-deoxy-6-phosphogluconate (KDPG) and
2-keto-4-hydroxyglutarate (KHG) aldolases,
transaldolase, dihydrodipicolinate synthase sub-family,
Type I 3-dehydroquinate dehydratase, DeoC and DhnA
proteins, and metal-independent
fructose-1,6-bisphosphate aldolase. Although
structurally similar, the class II aldolases use a
different mechanism and are believed to have an
independent evolutionary origin.
Length = 201
Score = 141 bits (358), Expect = 2e-40
Identities = 73/219 (33%), Positives = 100/219 (45%), Gaps = 28/219 (12%)
Query: 134 IDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVL 193
IDLT L D T + L +AI+ AAVCV P V L
Sbjct: 1 IDLTLLHPDATLEDIAKLCDEAIEY----------------GFAAVCVNPGYVRLAADAL 44
Query: 194 DRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPEL 253
A DV V V GFP+G E ++ E+E DE+D+VI + W E+
Sbjct: 45 ----AGSDVPV-IVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEV 99
Query: 254 FSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATI 313
E+ + E + +K IL LKT++ I A+ A AG+DFIKTSTG AT+
Sbjct: 100 LEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGGATV 159
Query: 314 PAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWI 352
+M A+ G ++G+K AGGI T ED++ I
Sbjct: 160 EDVKLMKEAV-------GGRVGVKAAGGIKTLEDALAAI 191
Score = 95.5 bits (238), Expect = 4e-23
Identities = 37/106 (34%), Positives = 55/106 (51%)
Query: 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIH 60
GFP+G E ++ E+E DE+D+VI + W E+ E+ + E + +
Sbjct: 56 GFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLP 115
Query: 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPA 106
+K IL LKT++ I A+ A AG+DFIKTSTG AT+
Sbjct: 116 LKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGGATVED 161
>gnl|CDD|234784 PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional.
Length = 221
Score = 112 bits (282), Expect = 4e-29
Identities = 71/258 (27%), Positives = 113/258 (43%), Gaps = 43/258 (16%)
Query: 129 KIIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVD 188
I ++ID T L + TE ++ L +A + A+VCV P+ V
Sbjct: 5 DIAKYIDHTLLKPEATEEDIDKLCDEAKE----------------YGFASVCVNPSYVKL 48
Query: 189 VIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNN 248
++L DVKV +V GFP G + E + DE+D+VI + +
Sbjct: 49 AAELL----KGSDVKVCTVI-GFPLGANTTAVKAFEAKDAIANGADEIDMVINIGALKSG 103
Query: 249 QWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEK 308
W + ++++ + E G + K I+ L T E A A AG+DF+KTSTG
Sbjct: 104 DWDAVEADIRAVVEAAGGAVL-KVIIETCLL-TDEEKVKACEIAKEAGADFVKTSTGFST 161
Query: 309 TNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDL 368
AT+ +K + G ++G+K +GGI T ED++ +I G
Sbjct: 162 GGATV-------EDVKLMRETVGPRVGVKASGGIRTLEDALA-----MIEAGAT------ 203
Query: 369 FRIGASSLLNNILQELEA 386
R+G S+ + IL+ LE
Sbjct: 204 -RLGTSAGV-AILKGLEK 219
Score = 64.8 bits (159), Expect = 4e-12
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Query: 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIH 60
GFP G + E + DE+D+VI + + W + ++++ + E +
Sbjct: 65 GFPLGANTTAVKAFEAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVL 124
Query: 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPAD 107
K I+ L T E A A AG+DF+KTSTG AT D
Sbjct: 125 -KVIIETCLL-TDEEKVKACEIAKEAGADFVKTSTGFSTGGAT-VED 168
>gnl|CDD|232838 TIGR00126, deoC, deoxyribose-phosphate aldolase.
Deoxyribose-phosphate aldolase is involved in the
catabolism of nucleotides and deoxyriibonucleotides. The
catalytic process is as follows: 2-deoxy-D-ribose
5-phosphate = D-glyceraldehyde 3-phosphate +
acetaldehyde. It is found in both gram-postive and
gram-negative bacteria [Purines, pyrimidines,
nucleosides, and nucleotides, Other, Energy metabolism,
Other].
Length = 211
Score = 108 bits (272), Expect = 8e-28
Identities = 65/231 (28%), Positives = 101/231 (43%), Gaps = 30/231 (12%)
Query: 133 FIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKV 192
ID T L D TE + TL +A AAVCV P+ V ++
Sbjct: 5 LIDHTALKADTTEEDIITLCAQAKTY----------------KFAAVCVNPSYVPLAKEL 48
Query: 193 LDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPE 252
L +V++ +V GFP G + +L+E + K DEVD+VI + +
Sbjct: 49 L----KGTEVRICTVV-GFPLGASTTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEV 103
Query: 253 LFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNAT 312
++ +++ + E C + +K I+ G L E I A + AG+DF+KTSTG AT
Sbjct: 104 VYDDIRAVVEACA-GVLLKVIIETGLLTDEE-IRKACEICIDAGADFVKTSTGFGAGGAT 161
Query: 313 IPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 363
+ +M G IG+K +GG+ T ED++ I +G
Sbjct: 162 VEDVRLM-------RNTVGDTIGVKASGGVRTAEDAIAMIEAGASRIGASA 205
Score = 64.4 bits (157), Expect = 5e-12
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIH 60
GFP G + +L+E + K DEVD+VI + + ++ +++ + E C +
Sbjct: 61 GFPLGASTTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEAC-AGVL 119
Query: 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATI 104
+K I+ G L E I A + AG+DF+KTSTG AT+
Sbjct: 120 LKVIIETGLLTDEE-IRKACEICIDAGADFVKTSTGFGAGGATV 162
>gnl|CDD|216703 pfam01791, DeoC, DeoC/LacD family aldolase. This family includes
diverse aldolase enzymes. This family includes the
enzyme deoxyribose-phosphate aldolase EC:4.1.2.4, which
is involved in nucleotide metabolism. The family also
includes a group of related bacterial proteins of
unknown function. The family also includes tagatose
1,6-diphosphate aldolase (EC:4.1.2.40) is part of the
tagatose-6-phosphate pathway of galactose-6-phosphate
degradation.
Length = 231
Score = 87.8 bits (218), Expect = 4e-20
Identities = 69/265 (26%), Positives = 107/265 (40%), Gaps = 54/265 (20%)
Query: 134 IDLTTLSGDDTEAV-VETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKV 192
ID T L+ DT + ++ L +A++P +AVCV P V ++
Sbjct: 6 IDHTVLNPPDTASADIKALVAEALEP----------------GASAVCVNPGYVALAARL 49
Query: 193 LDRENARDDVKVASVAAGFPSGQYLLETR-----LHEIELLAKQKVDEVDIVIQRSLVLN 247
L + V +A V GFP+G YL + + E E DEVD+V+ +
Sbjct: 50 LGK------VDIALVI-GFPAGTYLTPVKGRDVLVAEAEEAIALGADEVDMVVNIGADGS 102
Query: 248 NQWPELFSEVKQMKEKCGEKIHMKTIL-------AVGELKTSENIYCASMTAMFAGSDFI 300
++ +E+ +KE C + +K IL + + + A+ AG+DF+
Sbjct: 103 EDEEQVLAEIAAVKEACHGE-GLKVILEAYLRGEEIKDKVDPHLVAKATRVGAEAGADFV 161
Query: 301 KTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGIS--TFEDSVRWIYLVLIM 358
KTSTG + AT I + G+K +GGI F +V + LI
Sbjct: 162 KTSTGFGERGATEEDVQIFKEVVGGAP------PGVKASGGIKEKDFLRTVE-DAIALIE 214
Query: 359 LGPDWLNKDLFRIGASSLLNNILQE 383
G D RIG S+ I Q
Sbjct: 215 AGAD-------RIGVSAGR-AIWQG 231
Score = 55.8 bits (135), Expect = 5e-09
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 13/115 (11%)
Query: 1 GFPSGQYLLETR-----LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKC 55
GFP+G YL + + E E DEVD+V+ + ++ +E+ +KE C
Sbjct: 60 GFPAGTYLTPVKGRDVLVAEAEEAIALGADEVDMVVNIGADGSEDEEQVLAEIAAVKEAC 119
Query: 56 EEKIHMKTIL-------AVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNAT 103
+ +K IL + + + A+ AG+DF+KTSTG + AT
Sbjct: 120 HGE-GLKVILEAYLRGEEIKDKVDPHLVAKATRVGAEAGADFVKTSTGFGERGAT 173
>gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the
M1P-guanylyltransferase B-isoform like proteins.
GDP-mannose pyrophosphorylase (GTP:
alpha-d-mannose-1-phosphate guanyltransferase) catalyzes
the formation of GDP-d-mannose from GTP and
alpha-d-mannose-1-Phosphate. It contains an N-terminal
catalytic domain and a C-terminal Lefthanded-beta-Helix
fold domain. GDP-d-mannose is the activated form of
mannose for formation of cell wall lipoarabinomannan and
various mannose-containing glycolipids and
polysaccharides. The function of GDP-mannose
pyrophosphorylase is essential for cell wall integrity,
morphogenesis and viability. Repression of GDP-mannose
pyrophosphorylase in yeast leads to phenotypes, such as
cell lysis, defective cell wall, and failure of
polarized growth and cell separation.
Length = 233
Score = 31.0 bits (71), Expect = 0.74
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 222 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHM 270
H+IE LAK V E+ L +N + ++ +K+ ++K G KI
Sbjct: 35 EHQIEALAKAGVKEI------ILAVNYRPEDMVPFLKEYEKKLGIKITF 77
Score = 29.5 bits (67), Expect = 2.4
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 13 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHM 61
H+IE LAK V E+ L +N + ++ +K+ ++K KI
Sbjct: 35 EHQIEALAKAGVKEI------ILAVNYRPEDMVPFLKEYEKKLGIKITF 77
>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 753
Score = 29.2 bits (66), Expect = 4.2
Identities = 29/157 (18%), Positives = 62/157 (39%), Gaps = 13/157 (8%)
Query: 13 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGELKT 72
L E+ +++++EV+ ++ +L + + ++K + HM + E K
Sbjct: 513 LEEVRKELEEELEEVEKLLDEVELLTGANSGGKTSLLELKAQIVVLAHMGLPVPAEEAKV 572
Query: 73 --SENIYYASMTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLK-NKKSLLLK 129
+ + + + + ST K+K N +P R+ + D + + ++K
Sbjct: 573 EAVDEVKFLKKKKGILDAGAFE-STLKDKKNKVLPEAKKRKLKLGDEVEVITGEPGAVVK 631
Query: 130 IIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEK 166
II I EA+V++ LK I + K
Sbjct: 632 IIAGIL---------EALVQSGILKVIVSHLDLEIIK 659
>gnl|CDD|226118 COG3590, PepO, Predicted metalloendopeptidase [Posttranslational
modification, protein turnover, chaperones].
Length = 654
Score = 28.5 bits (64), Expect = 6.4
Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 13/90 (14%)
Query: 87 GSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEFIDLTTLSGDDTEA 146
D G+ A IPAD +R L L+ IIE + +D
Sbjct: 21 QDDLYGYVNGEWLKTAEIPADRSRDGAFDKLDDRAEA--LVRDIIEAAAANEQAPEDAIL 78
Query: 147 ---------VVETLTLKA--IQPLSEELKE 165
++ + + PL EL E
Sbjct: 79 QRIGKLYRSFMDEAKREKAGVDPLKPELAE 108
>gnl|CDD|232923 TIGR00332, neela_ferrous, desulfoferrodoxin ferrous iron-binding
domain. This domain comprises essentially the full
length of neelaredoxin, a monomeric, blue, non-heme iron
protein of Desulfovibrio gigas said to bind two iron
atoms per monomer with identical spectral properties.
Neelaredoxin was shown recently to have significant
superoxide dismutase activity. This domain is also found
(in a form in which the distance between the motifs
H[HWYF]IXW and CN[IL]HGXW is somewhat shorter) as the
C-terminal domain of desulfoferrodoxin, which is said to
bind a single ferrous iron atom.The N-terminal domain of
desulfoferrodoxin is described in a separate model,
dfx_rbo (TIGR00320) [Energy metabolism, Electron
transport].
Length = 107
Score = 26.9 bits (59), Expect = 8.7
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 16/92 (17%)
Query: 187 VDVIKVLDRENARDDVKVASVAAGFPSGQYLLETR--LHEIELLAKQKVDEVDIVIQRSL 244
V VI+ DRE A VKV + P + +E +H IEL+ D+V+++ L
Sbjct: 11 VPVIECKDREGANVYVKV-KIGTEIP---HPMEENHHIHWIELIMG------DLVLRKVL 60
Query: 245 VLNNQWPELFSEVKQMKEKCGEKIHMKTILAV 276
+ P VK K+ M IL
Sbjct: 61 FPGDMPPAEKLMVKAPS----FKVEMSFILRA 88
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.369
Gapped
Lambda K H
0.267 0.0827 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,368,016
Number of extensions: 1885012
Number of successful extensions: 1759
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1728
Number of HSP's successfully gapped: 33
Length of query: 387
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 288
Effective length of database: 6,546,556
Effective search space: 1885408128
Effective search space used: 1885408128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.7 bits)