RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10250
(387 letters)
>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel,
lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB:
1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A
3nq8_A 3q2d_A* 3nr0_A 3nqv_A
Length = 260
Score = 267 bits (684), Expect = 2e-88
Identities = 89/263 (33%), Positives = 134/263 (50%), Gaps = 19/263 (7%)
Query: 124 KSLLLKIIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYP 183
K+ L+ ++ +DLTTL+ DDT+ V L +A P+ +TAA+C+YP
Sbjct: 6 KASSLRALKLMDLTTLNDDDTDEKVIALCHQAKTPVG--------------NTAAICIYP 51
Query: 184 ARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRS 243
+ K L +E ++++A+V FP G ++ L E DEVD+V
Sbjct: 52 RFIPIARKTL-KEQGTPEIRIATVT-NFPHGNDDIDIALAETRAAIAYGADEVDVVFPYR 109
Query: 244 LVLNNQWPELFSEVKQMKEKCGEK-IHMKTILAVGELKTSENIYCASMTAMFAGSDFIKT 302
++ F VK KE C + +K I+ GELK I AS ++ AG+DFIKT
Sbjct: 110 ALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKT 169
Query: 303 STGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362
STGK NAT + IM I+ K +G KPAGG+ T ED+ +++ + + G D
Sbjct: 170 STGKVAVNATPESARIMMEVIRDMG--VEKTVGFKPAGGVRTAEDAQKYLAIADELFGAD 227
Query: 363 WLNKDLFRIGASSLLNNILQELE 385
W + +R GASSLL ++L+ L
Sbjct: 228 WADARHYRFGASSLLASLLKALG 250
Score = 126 bits (319), Expect = 3e-34
Identities = 39/107 (36%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEK-I 59
FP G ++ L E DEVD+V ++ F VK KE C +
Sbjct: 76 NFPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANV 135
Query: 60 HMKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPA 106
+K I+ GELK I AS ++ AG+DFIKTSTGK NAT +
Sbjct: 136 LLKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKVAVNATPES 182
>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC,
DERA, structur genomics, structural genomics consortium,
SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1
Length = 281
Score = 265 bits (678), Expect = 2e-87
Identities = 79/270 (29%), Positives = 123/270 (45%), Gaps = 22/270 (8%)
Query: 122 NKKSLLLKIIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCV 181
+K +I D T L + TE + L ++++ AAVCV
Sbjct: 24 TEKFAAWSVICLTDHTFLDENGTEDDIRELCNESVKT--------------CPFAAAVCV 69
Query: 182 YPARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQ 241
YP V + + + +E K+A V FP G +E L++ E DE+D+VI
Sbjct: 70 YPKFVKFINEKIKQEINPFKPKIACVI-NFPYGTDSMEKVLNDTEKALDDGADEIDLVIN 128
Query: 242 RSLVLNNQWPELFSE---VKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSD 298
++ N L + +K+ K +K I+ VGELKT + I ++ + +D
Sbjct: 129 YKKIIENTDEGLKEATKLTQSVKKLLTNK-ILKVIIEVGELKTEDLIIKTTLAVLNGNAD 187
Query: 299 FIKTSTGKEKTNATIPAGIIMCSAIKHF---HKLSGKKIGLKPAGGISTFEDSVRWIYLV 355
FIKTSTGK + NAT + + AIK + + KIGLK +GGIS + +I L
Sbjct: 188 FIKTSTGKVQINATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYILLA 247
Query: 356 LIMLGPDWLNKDLFRIGASSLLNNILQELE 385
L + D FRIG+SSL+ + + +
Sbjct: 248 RRFLSSLACHPDNFRIGSSSLVIKLRKVIS 277
Score = 117 bits (295), Expect = 1e-30
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSE---VKQMKEKCEE 57
FP G +E L++ E DE+D+VI ++ N L + +K+
Sbjct: 97 NFPYGTDSMEKVLNDTEKALDDGADEIDLVINYKKIIENTDEGLKEATKLTQSVKKLLTN 156
Query: 58 KIHMKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPA 106
K +K I+ VGELKT + I ++ + +DFIKTSTGK + NAT +
Sbjct: 157 K-ILKVIIEVGELKTEDLIIKTTLAVLNGNADFIKTSTGKVQINATPSS 204
>4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts,
bradyzoite, structural genomics, for structural genomics
of infectious diseases; 1.37A {Toxoplasma gondii} PDB:
3qyq_A*
Length = 297
Score = 247 bits (632), Expect = 3e-80
Identities = 58/286 (20%), Positives = 114/286 (39%), Gaps = 36/286 (12%)
Query: 118 SRLKNKKSLLLKIIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTA 177
K+ ++ F ++ L+ +T V + A +
Sbjct: 14 GGTIYKQFTSRTLLNFFEVAALTDGETNESVAAVCKIAAKD---------------PAIV 58
Query: 178 AVCVYPARVVDVIKVLDRENAR-DDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEV 236
V V PA V + + L + +KV + FP G +T E K DE+
Sbjct: 59 GVSVRPAFVRFIRQELVKSAPEVAGIKVCAAV-NFPEGTGTPDTVSLEAVGALKDGADEI 117
Query: 237 DIVIQRSLVLNN---QWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAM 293
+ +I + N + V ++K+ G K +K +L+ GEL+ + I A++ A+
Sbjct: 118 ECLIDWRRMNENVADGESRIRLLVSEVKKVVGPK-TLKVVLSGGELQGGDIISRAAVAAL 176
Query: 294 FAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKI---------------GLKP 338
G+DF++TS+G T+AT+ ++ A++ + ++I G+K
Sbjct: 177 EGGADFLQTSSGLGATHATMFTVHLISIALREYMVRENERIRVEGINREGAAVRCIGIKI 236
Query: 339 AGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 384
G ++ ++ ++ GP + +D FR+G L L++
Sbjct: 237 EVGDVHMAETADFLMQMIFENGPRSIVRDKFRVGGGFNLLKELRDC 282
Score = 119 bits (301), Expect = 2e-31
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNN---QWPELFSEVKQMKEKCEE 57
FP G +T E K DE++ +I + N + V ++K+
Sbjct: 91 NFPEGTGTPDTVSLEAVGALKDGADEIECLIDWRRMNENVADGESRIRLLVSEVKKVVGP 150
Query: 58 KIHMKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPA 106
K +K +L+ GEL+ + I A++ A+ G+DF++TS+G T+AT+
Sbjct: 151 K-TLKVVLSGGELQGGDIISRAAVAALEGGADFLQTSSGLGATHATMFT 198
>3oa3_A Aldolase; structural genomics, seattle structural genomics center
for infectious disease, ssgcid, pathogenic fungus; 1.60A
{Coccidioides immitis}
Length = 288
Score = 186 bits (473), Expect = 2e-56
Identities = 62/289 (21%), Positives = 119/289 (41%), Gaps = 42/289 (14%)
Query: 100 TNATIPADLTRQFEAV--DLSRLKNKKSLLLKIIEFIDLTTLSGDDTEAVVETLTLKAIQ 157
N ++ + + + L ++ I + ID T LS T + ++ L +A +
Sbjct: 26 NNEEWDLLISGKKATLQYPIPLLCYPAPEVVSIAQIIDHTQLSLSATGSQIDVLCAEAKE 85
Query: 158 PLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPSGQYL 217
A VCV P V ++ L V V V GF G Y
Sbjct: 86 Y----------------GFATVCVRPDYVSRAVQYL----QGTQVGVTCVI-GFHEGTYS 124
Query: 218 LETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVG 277
+ ++ E + + E+D+V+ + ++ ++F +++ ++ + +K IL
Sbjct: 125 TDQKVSEAKRAMQNGASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAKDA-ILKVILETS 183
Query: 278 ELKTSENIYCASMTAMFAGSDFIKTSTGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLK 337
+L T++ I + + AG+D++KTSTG A+I +M + + +K
Sbjct: 184 QL-TADEIIAGCVLSSLAGADYVKTSTGFNGPGASIENVSLMSAVCDSL----QSETRVK 238
Query: 338 PAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELEA 386
+GGI T ED V+ ++ G + R+GAS+ + I+ E
Sbjct: 239 ASGGIRTIEDCVK-----MVRAGAE-------RLGASAGV-KIVNETRL 274
Score = 102 bits (255), Expect = 7e-25
Identities = 25/106 (23%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIH 60
GF G Y + ++ E + + E+D+V+ + ++ ++F +++ ++ ++
Sbjct: 117 GFHEGTYSTDQKVSEAKRAMQNGASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAKDA-I 175
Query: 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPA 106
+K IL +L T++ I + + AG+D++KTSTG A+I
Sbjct: 176 LKVILETSQL-TADEIIAGCVLSSLAGADYVKTSTGFNGPGASIEN 220
>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE CIT; 1.75A {Thermotoga maritima} PDB: 1o0y_A*
3r13_A*
Length = 260
Score = 183 bits (466), Expect = 7e-56
Identities = 74/264 (28%), Positives = 115/264 (43%), Gaps = 43/264 (16%)
Query: 123 KKSLLLKIIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVY 182
+ + + + I+ T L T ++ L L+A + VCV
Sbjct: 36 ESAGIEDVKSAIEHTNLKPFATPDDIKKLCLEAREN----------------RFHGVCVN 79
Query: 183 PARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQR 242
P V + L DVKV +V GFP G T+ HE + DE+D+VI
Sbjct: 80 PCYVKLAREEL----EGTDVKVVTVV-GFPLGANETRTKAHEAIFAVESGADEIDMVINV 134
Query: 243 SLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKT 302
++ +W ++ +++ + E K +K I+ L T E I A + + AG+ F+KT
Sbjct: 135 GMLKAKEWEYVYEDIRSVVESVKGK-VVKVIIETCYLDTEEKIA-ACVISKLAGAHFVKT 192
Query: 303 STGKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD 362
STG AT +M + G ++G+K +GGI TFED+V+ +IM G D
Sbjct: 193 STGFGTGGATAEDVHLMKWIV-------GDEMGVKASGGIRTFEDAVK-----MIMYGAD 240
Query: 363 WLNKDLFRIGASSLLNNILQELEA 386
RIG SS + I+Q E
Sbjct: 241 -------RIGTSSGV-KIVQGGEE 256
Score = 103 bits (258), Expect = 1e-25
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIH 60
GFP G T+ HE + DE+D+VI ++ +W ++ +++ + E + K
Sbjct: 102 GFPLGANETRTKAHEAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGK-V 160
Query: 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPA 106
+K I+ L T E I A + + AG+ F+KTSTG AT
Sbjct: 161 VKVIIETCYLDTEEKI-AACVISKLAGAHFVKTSTGFGTGGATAED 205
>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, ALS collaborative
crystallography; HET: GOL; 1.25A {Mycobacterium
smegmatis} PDB: 3ng3_A
Length = 231
Score = 178 bits (455), Expect = 1e-54
Identities = 59/250 (23%), Positives = 100/250 (40%), Gaps = 34/250 (13%)
Query: 129 KIIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVD 188
++ +D T L + T + V L +A AVCV P V
Sbjct: 12 QVAALVDHTLLKPEATPSDVTALVDEAADL----------------GVFAVCVSPPLVS- 54
Query: 189 VIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNN 248
+ A + +A+VA GFPSG+++ + E EL E+D+VI L
Sbjct: 55 ----VAAGVAPSGLAIAAVA-GFPSGKHVPGIKATEAELAVAAGATEIDMVIDVGAALAG 109
Query: 249 QWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSEN---IYCASMTAMFAGSDFIKTSTG 305
+ +++ +++ +K I+ L + A AG+DF+KTSTG
Sbjct: 110 DLDAVSADITAVRKAVRAA-TLKVIVESAALLEFSGEPLLADVCRVARDAGADFVKTSTG 168
Query: 306 KEKT-NATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 364
+ A++ A IM + G+++G+K +GGI T E + + LG
Sbjct: 169 FHPSGGASVQAVEIMARTV-------GERLGVKASGGIRTAEQAAAMLDAGATRLGLSGS 221
Query: 365 NKDLFRIGAS 374
L G++
Sbjct: 222 RAVLDGFGSA 231
Score = 94.2 bits (235), Expect = 1e-22
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Query: 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIH 60
GFPSG+++ + E EL E+D+VI L + +++ +++
Sbjct: 71 GFPSGKHVPGIKATEAELAVAAGATEIDMVIDVGAALAGDLDAVSADITAVRKAVRAA-T 129
Query: 61 MKTILAVGELKTSEN---IYYASMTAMFAGSDFIKTSTGKEKT-NATIPA 106
+K I+ L + A AG+DF+KTSTG + A++ A
Sbjct: 130 LKVIVESAALLEFSGEPLLADVCRVARDAGADFVKTSTGFHPSGGASVQA 179
>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle,
archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP:
c.1.10.1
Length = 226
Score = 176 bits (449), Expect = 8e-54
Identities = 60/255 (23%), Positives = 95/255 (37%), Gaps = 37/255 (14%)
Query: 130 IIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDV 189
+I +D L T KA + AA CV P V
Sbjct: 1 MIHLVDYALLKPYLTVDEAVAGARKAEEL----------------GVAAYCVNPIYAPVV 44
Query: 190 IKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQ 249
+L VK+ VA FP G +R+ + LA + DE+D+V LV + +
Sbjct: 45 RPLLR------KVKLCVVA-DFPFGALPTASRIALVSRLA-EVADEIDVVAPIGLVKSRR 96
Query: 250 WPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKT 309
W E+ ++ + G ++ +K I L E Y AG+ FIK+STG +
Sbjct: 97 WAEVRRDLISVVGAAGGRV-VKVITEEPYL-RDEERYTLYDIIAEAGAHFIKSSTGFAEE 154
Query: 310 NATIP------AGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW 363
+ +AI + K G ++G+K AGGI T E + ++
Sbjct: 155 AYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKA-----IVDAIGWG 209
Query: 364 LNKDLFRIGASSLLN 378
+ R+G S+
Sbjct: 210 EDPARVRLGTSTPEA 224
Score = 88.9 bits (221), Expect = 1e-20
Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 3/121 (2%)
Query: 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIH 60
FP G +R+ + LA + DE+D+V LV + +W E+ ++ + ++
Sbjct: 58 DFPFGALPTASRIALVSRLA-EVADEIDVVAPIGLVKSRRWAEVRRDLISVVGAAGGRV- 115
Query: 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRL 120
+K I L E Y AG+ FIK+STG + + +
Sbjct: 116 VKVITEEPYL-RDEERYTLYDIIAEAGAHFIKSSTGFAEEAYAARQGNPVHSTPERAAAI 174
Query: 121 K 121
Sbjct: 175 A 175
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics,
structural genomics center for infectious disease,
ssgcid; 1.70A {Entamoeba histolytica}
Length = 239
Score = 173 bits (440), Expect = 3e-52
Identities = 70/256 (27%), Positives = 115/256 (44%), Gaps = 43/256 (16%)
Query: 130 IIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDV 189
+ ++ID T L D TE + L +A + A+VCV P V
Sbjct: 27 LAKYIDHTLLKADATEEQIRKLCSEAAEY----------------KFASVCVNPTWVPLC 70
Query: 190 IKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQ 249
++L VKV +V GFP G E + +E ++ +Q +EVD+VI +V +
Sbjct: 71 AELL----KGTGVKVCTVI-GFPLGATPSEVKAYETKVAVEQGAEEVDMVINIGMVKAKK 125
Query: 250 WPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKT 309
+ ++ +VK + + G+ + K I+ L T+E + AG++++KTSTG
Sbjct: 126 YDDVEKDVKAVVDASGKAL-TKVIIECCYL-TNEEKVEVCKRCVAAGAEYVKTSTGFGTH 183
Query: 310 NATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLF 369
AT +M + G K +K AGGI TF+D+++ +I G
Sbjct: 184 GATPEDVKLMKDTV-------GDKALVKAAGGIRTFDDAMK-----MINNGAS------- 224
Query: 370 RIGASSLLNNILQELE 385
RIGAS+ + IL +
Sbjct: 225 RIGASAGI-AILNGIH 239
Score = 96.9 bits (242), Expect = 2e-23
Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Query: 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIH 60
GFP G E + +E ++ +Q +EVD+VI +V ++ ++ +VK + + + +
Sbjct: 86 GFPLGATPSEVKAYETKVAVEQGAEEVDMVINIGMVKAKKYDDVEKDVKAVVDASGKAL- 144
Query: 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPA 106
K I+ L T+E + AG++++KTSTG AT
Sbjct: 145 TKVIIECCYL-TNEEKVEVCKRCVAAGAEYVKTSTGFGTHGATPED 189
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural
genomics, PSI, protein structure initiative; 2.00A
{Aquifex aeolicus} SCOP: c.1.10.1
Length = 225
Score = 167 bits (425), Expect = 3e-50
Identities = 63/260 (24%), Positives = 102/260 (39%), Gaps = 45/260 (17%)
Query: 127 LLKIIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARV 186
++ + ++ID L +E +E LK+ + AVCV P V
Sbjct: 1 MIDVRKYIDNAALKPHLSEKEIEEFVLKSEEL----------------GIYAVCVNPYHV 44
Query: 187 VDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVL 246
+ VKV V GFP G ++ E + E+DIV S
Sbjct: 45 KLASSIAK------KVKVCCVI-GFPLGLNKTSVKVKEAVEAVRDGAQELDIVWNLSAFK 97
Query: 247 NNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGK 306
+ ++ + E+K++ + + K I+ L E I A + AG+DFIKTSTG
Sbjct: 98 SEKYDFVVEELKEIFRETPSAV-HKVIVETPYL-NEEEIKKAVEICIEAGADFIKTSTGF 155
Query: 307 EKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNK 366
T+ ++ S+ +I +K +GGI E ++ +I G D
Sbjct: 156 APRGTTLEEVRLIKSSA-------KGRIKVKASGGIRDLETAIS-----MIEAGAD---- 199
Query: 367 DLFRIGASSLLNNILQELEA 386
RIG SS + +I +E
Sbjct: 200 ---RIGTSSGI-SIAEEFLK 215
Score = 94.2 bits (235), Expect = 1e-22
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
Query: 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIH 60
GFP G ++ E + E+DIV S + ++ + E+K++ + +
Sbjct: 61 GFPLGLNKTSVKVKEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAV- 119
Query: 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPA 106
K I+ L E I A + AG+DFIKTSTG T+
Sbjct: 120 HKVIVETPYL-NEEEIKKAVEICIEAGADFIKTSTGFAPRGTTLEE 164
>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate,
carbinolamine, structural genomics, riken structural
genomics/proteomics initiative; HET: HPD; 1.40A {Thermus
thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*
Length = 220
Score = 164 bits (418), Expect = 4e-49
Identities = 56/259 (21%), Positives = 97/259 (37%), Gaps = 43/259 (16%)
Query: 128 LKIIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVV 187
+ + ID T L T V +A++ +C+ P+ V
Sbjct: 1 MDLAAHIDHTLLKPTATLEEVAKAAEEALEY----------------GFYGLCIPPSYVA 44
Query: 188 DVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLN 247
V ++ +V GFP G E + E L + DEVD+V+
Sbjct: 45 WVRARY----PHAPFRLVTVV-GFPLGYQEKEVKALEAALACARGADEVDMVLHLGRAKA 99
Query: 248 NQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKE 307
L +EV+ ++E + + +K IL G + E I + A+ G+DF+KTSTG
Sbjct: 100 GDLDYLEAEVRAVREAVPQAV-LKVILETGYF-SPEEIARLAEAAIRGGADFLKTSTGFG 157
Query: 308 KTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKD 367
A++ ++ + +K AGGI E ++R ++ G
Sbjct: 158 PRGASLEDVALLVRVA-------QGRAQVKAAGGIRDRETALR-----MLKAGAS----- 200
Query: 368 LFRIGASSLLNNILQELEA 386
R+G SS + ++
Sbjct: 201 --RLGTSSGV-ALVAGEGG 216
Score = 93.4 bits (233), Expect = 2e-22
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIH 60
GFP G E + E L + DEVD+V+ L +EV+ ++E + +
Sbjct: 62 GFPLGYQEKEVKALEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAV- 120
Query: 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPA 106
+K IL G + E I + A+ G+DF+KTSTG A++
Sbjct: 121 LKVILETGYF-SPEEIARLAEAAIRGGADFLKTSTGFGPRGASLED 165
>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM
barrel, riken S genomics/proteomics initiative, RSGI,
structural genomics,; 2.00A {Aeropyrum pernix} SCOP:
c.1.10.1
Length = 234
Score = 161 bits (409), Expect = 1e-47
Identities = 61/258 (23%), Positives = 95/258 (36%), Gaps = 44/258 (17%)
Query: 130 IIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDV 189
+ ID T LS TE V L +A + P V +
Sbjct: 20 LASRIDSTLLSPRATEEDVRNLVREASDY----------------GFRCAVLTPVYTVKI 63
Query: 190 IKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQ 249
+ + VK+ SV GFP GQ LE +L E + + + E+D+V SL
Sbjct: 64 SGLA----EKLGVKLCSVI-GFPLGQAPLEVKLVEAQTVLEAGATELDVVPHLSLGPEAV 118
Query: 250 WPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSTGKEKT 309
+ E+ VK +K IL + + ++ AG+D +KTSTG
Sbjct: 119 YREVSGIVK---LAKSYGAVVKVILEAPLW-DDKTLSLLVDSSRRAGADIVKTSTGVYTK 174
Query: 310 NATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLF 369
+ S K +G+K +GGI + D+V + G D
Sbjct: 175 GGDPVTVFRLASLAK------PLGMGVKASGGIRSGIDAVL-----AVGAGAD------- 216
Query: 370 RIGASSLLNNILQELEAL 387
IG SS + +L+ ++L
Sbjct: 217 IIGTSSAV-KVLESFKSL 233
Score = 87.3 bits (217), Expect = 4e-20
Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 4/108 (3%)
Query: 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKIH 60
GFP GQ LE +L E + + + E+D+V SL + E+ V K
Sbjct: 79 GFPLGQAPLEVKLVEAQTVLEAGATELDVVPHLSLGPEAVYREVSGIV---KLAKSYGAV 135
Query: 61 MKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPADL 108
+K IL + + ++ AG+D +KTSTG
Sbjct: 136 VKVILEAPLW-DDKTLSLLVDSSRRAGADIVKTSTGVYTKGGDPVTVF 182
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.1 bits (132), Expect = 3e-08
Identities = 63/398 (15%), Positives = 123/398 (30%), Gaps = 125/398 (31%)
Query: 33 RSLVLNN-----QWP---ELFSEVKQMKEKCEEKIHMKTI-LAVGELKTSENIYYASMTA 83
R L L++ F Q++E+ + + T A + T+ A +
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTP----AELVG 62
Query: 84 MFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEFIDLTTLSGDD 143
F G ++ S+ E + QF+ V L L + EF + L G+D
Sbjct: 63 KFLG--YV--SSLVEPSKVG-------QFDQV----------LNLCLTEF-ENCYLEGND 100
Query: 144 TEAVVETLTLKAIQPLSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDR-------E 196
A+ L + ++++ AR++ + D+
Sbjct: 101 IHALA--AKLLQENDTTLVKTKELIK----------NYITARIM-AKRPFDKKSNSALFR 147
Query: 197 NARDDVKVASVAAGFPSGQ-----YLLETR-LHEI-ELLAKQKVDEVDIVIQRSLVLNNQ 249
+ A + A F GQ Y E R L++ +L + + +
Sbjct: 148 AVGE--GNAQLVAIFG-GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 250 WPELFSEVKQMKEKCGEKIHMKTILAVGE-LKTSENIYCASMTAMFAGSDFIKTSTGKEK 308
++F++ L + E L+ N D++ +
Sbjct: 205 AEKVFTQG----------------LNILEWLENPSNT---------PDKDYLLSIP---- 235
Query: 309 TNATIPAGIIMCSAIKHFHKLSGKKIGLKPA------GGISTFEDSVRWIYLVLIMLGPD 362
+ P +I + H+ ++ K +G P G + + + V I
Sbjct: 236 --ISCP--LIGVIQLAHY-VVTAKLLGFTPGELRSYLKGATGHSQGL--VTAVAIAETDS 288
Query: 363 WLN---------KDLFRIGA--------SSLLNNILQE 383
W + LF IG +SL +IL++
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Score = 40.4 bits (94), Expect = 0.001
Identities = 71/497 (14%), Positives = 129/497 (25%), Gaps = 189/497 (38%)
Query: 6 QYLLETRLH----------EIELLAKQKV----DEVDIVIQRSLVLNNQWPELFSEVKQM 51
YL +H + L+ +++ I+ +R + LF V +
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN-SALFRAVGEG 152
Query: 52 KEKCEEKIHMKTILAV--G---------ELKTSENIY--YASMTAMFAGSDFIKTSTGKE 98
+ ++A+ G EL+ ++Y Y + D IK S
Sbjct: 153 NAQ---------LVAIFGGQGNTDDYFEELR---DLYQTYHVLVG-----DLIKFSAETL 195
Query: 99 KTNATIPADLTRQF-EAVDLSR-LKNKKS------LL-----LKII-------------- 131
D + F + +++ L+N + LL +I
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKL 255
Query: 132 ------EFID----LTTLSGD----------DTEAVVETLTLKAIQ-------------P 158
E T S D+ KAI P
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP 315
Query: 159 ---LSEELKEKVLHQQANVHTAAVCVYPARVVDVIKVLDRENAR----DDVKVA------ 205
L + E L V + + + V +++ N+ V+++
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK 375
Query: 206 -SVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVI-QRSLVLNNQW-----PELF-SEV 257
V +G P Y L L + + A +D+ I +R L +N++ P F S
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAK--APSGLDQSRIPFSERKLKFSNRFLPVASP--FHSH- 430
Query: 258 KQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDF----IKTSTGKE--KTNA 311
+ A + F D T G + +
Sbjct: 431 -----------LLVP--ASDLINKD----LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG 473
Query: 312 TIPAGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLV------LIMLGPDWLN 365
+I I+ C I V+W ++ GP +
Sbjct: 474 SISERIVDC--I---------------------IRLPVKWETTTQFKATHILDFGPGGAS 510
Query: 366 KDLFRIGASSLLNNILQ 382
G L +
Sbjct: 511 ------GLGVLTHRNKD 521
Score = 38.5 bits (89), Expect = 0.004
Identities = 50/290 (17%), Positives = 92/290 (31%), Gaps = 86/290 (29%)
Query: 41 WPELFSEVKQMKE-------KCEEKIHMKTILAVGELKTSENIYYASMTAMFAGSDFIKT 93
W F V++ +C E + T L L+ S + M + S+ +
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYE-AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 94 STGK--EKTNATIPADLTRQFEAVDLSRLKNKKSLLLKIIEFIDLTTLSG--DDTEAVVE 149
KTN+ +PA + V++S L N + +SG +
Sbjct: 348 QVQDYVNKTNSHLPAG-----KQVEIS-LVNGAK------NLV----VSGPPQSLYGLNL 391
Query: 150 TL-TLKA----IQ---PLSEELKEKVLHQ----QANVHTAAVCVYPARVVDVIKVLDREN 197
TL KA Q P SE K K ++ + H+ D+I +++
Sbjct: 392 TLRKAKAPSGLDQSRIPFSER-KLKFSNRFLPVASPFHSH----LLVPASDLI---NKDL 443
Query: 198 ARDDVKVASVAAGFPSGQYLLET----RLHEIELLAKQKVDEVDIVIQRSLVLNNQWPEL 253
+++V + P Y R+ + VD +I+ + +W
Sbjct: 444 VKNNVSFNAKDIQIP--VYDTFDGSDLRVLSGSISE----RIVDCIIRLPV----KWETT 493
Query: 254 ----------F---------SEVKQMKEKCGEKIHMKTILAVGELKTSEN 284
F + K+ G ++ I+A G L + +
Sbjct: 494 TQFKATHILDFGPGGASGLGVLTHRNKDGTG----VRVIVA-GTLDINPD 538
Score = 38.5 bits (89), Expect = 0.004
Identities = 32/163 (19%), Positives = 48/163 (29%), Gaps = 54/163 (33%)
Query: 229 AKQKVDEVDIVIQRSL-------VLNNQWPE----LFSEVKQMKEKCGEKIHMKTILAVG 277
A+ + D + + V+NN P F K G++I +
Sbjct: 1642 AQDVWNRADNHFKDTYGFSILDIVINN--PVNLTIHFGGEK------GKRIRENYSAMIF 1693
Query: 278 ELKTSENIYCASMTAMFAGSDFIKTS---TG-KEKTNATI---PAGIIMCSAIKHFHKLS 330
E + +F + TS K +AT PA +M A F L
Sbjct: 1694 ETIVDGKL---KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA--FEDL- 1747
Query: 331 GKKIGLKP-----AG-------------GISTFEDSVRWIYLV 355
K GL P AG + + E V +V
Sbjct: 1748 -KSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE---VV 1786
Score = 36.6 bits (84), Expect = 0.015
Identities = 36/233 (15%), Positives = 73/233 (31%), Gaps = 72/233 (30%)
Query: 1 GFPSGQYLLE---TRLHEIELLAKQKVDEVDIVIQRSL----------VLN---NQWPEL 44
G G+ + E + E + K K +++ I +L+ P L
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL 1736
Query: 45 F----SEVKQMKEKCEEKIHMKTILA---VGELKTSENIYYASMTAMFAG----SDFIKT 93
+ + +K + I A +GE YA++ + A ++
Sbjct: 1737 TLMEKAAFEDLKS--KGLIPADATFAGHSLGE--------YAALAS-LADVMSIESLVEV 1785
Query: 94 ST--GKEKTNATIPADLTRQFE----AVDLSRLKNKKSL--LLKIIEFIDLTTLSGDDTE 145
G A +P D + A++ R+ S L ++E + G T
Sbjct: 1786 VFYRGMTMQVA-VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV------GKRTG 1838
Query: 146 AVVETL-------------TLKAIQPLSEELKE------KVLHQQANVHTAAV 179
+VE + L+A+ ++ L ++ Q ++ V
Sbjct: 1839 WLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 33.9 bits (77), Expect = 0.100
Identities = 51/364 (14%), Positives = 91/364 (25%), Gaps = 151/364 (41%)
Query: 20 AKQKVDEVDIVIQRSL-------VLNNQWPELFSEVKQMKEKCEEKIHMKTILAVGE--L 70
A+ + D + + V+NN P TI GE
Sbjct: 1642 AQDVWNRADNHFKDTYGFSILDIVINN--P---------VNL--------TIHFGGEKGK 1682
Query: 71 KTSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKSLLLKI 130
+ EN Y++M FE + +LK +K + +I
Sbjct: 1683 RIREN--YSAMI-----------------------------FETIVDGKLKTEK-IFKEI 1710
Query: 131 IEFIDLTTLSGDDTEAVVETLTLKAI-QP----LS----EELKEKVLHQQANV---H--- 175
E T + L+ QP + E+LK K L H
Sbjct: 1711 NEHSTSYTFRSEK-----GLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLG 1765
Query: 176 --TAAVCVYPARVVDVIKVLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKV 233
A + A V +E
Sbjct: 1766 EYAALASL-----------------------ADV---MS-----IE-------------- 1780
Query: 234 DEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAM 293
V++V R + + P E M +A+ + + + S A+
Sbjct: 1781 SLVEVVFYRGMTMQVAVPR--------DELGRSNYGM---IAINPGRVAASF---SQEAL 1826
Query: 294 FAGSDFIKTSTGK--EKTNATIPAGIIMCS--------AIKHFHKLSGKKIGLKPAGGIS 343
+ + TG E N + + + + + +KI +
Sbjct: 1827 QYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSL 1886
Query: 344 TFED 347
+ E+
Sbjct: 1887 SLEE 1890
Score = 31.6 bits (71), Expect = 0.50
Identities = 28/172 (16%), Positives = 50/172 (29%), Gaps = 46/172 (26%)
Query: 1 GFPSGQYLLETRLHEIELLAKQKVDEVDIVI-QRSLVLNNQW-----PELF-SEVKQMKE 53
G P Y L L + + A +D+ I +R L +N++ P F S + +
Sbjct: 381 GPPQSLYGLNLTLRKAK--APSGLDQSRIPFSERKLKFSNRFLPVASP--FHSHL--LVP 434
Query: 54 KCEEKIHMKTILAVGELKTSENIYYASMTAMFAGSDF----IKTSTGKE--KTNATIPAD 107
+ I L + F D T G + + +I
Sbjct: 435 -ASDLI--NKDLVKNNVS-------------FNAKDIQIPVYDTFDGSDLRVLSGSISER 478
Query: 108 LTRQF--EAVDLSRLKNKKSLLLKIIEFIDLTTLSGDDTEAVVETLTLKAIQ 157
+ V K+ I++F G + + LT +
Sbjct: 479 IVDCIIRLPVKWETTTQFKA--THILDF-------GPGGASGLGVLTHRNKD 521
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 9e-07
Identities = 66/415 (15%), Positives = 124/415 (29%), Gaps = 113/415 (27%)
Query: 3 PSGQYLLETRLHEIE-----LLAKQKVDEVDIVIQRSL-VLNNQW-PELFSEVKQMKEKC 55
++ R+H I+ LL + + L VL N + C
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKP-------YENCLLVLLNVQNAKA---WNAFNLSC 266
Query: 56 EEKIHMKTILAVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPADLTRQ---- 111
K +L T+ +T DF+ +T + LT
Sbjct: 267 ------KILL------TTRF---KQVT------DFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 112 -FEAV------DLSRLKNKKS-LLLKII-----EFID----LTTLSGDDTEAVVETLTLK 154
DL R + L II + + ++ D ++E +L
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-SSLN 364
Query: 155 AIQPLSEELKEK-----VLHQQANVHTAAVCVYPARVV--DVIKVLDRENARDDVKVASV 207
++P E ++ V A++ T + + V+ DV+ V++ K + V
Sbjct: 365 VLEP--AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN-----KLHKYSLV 417
Query: 208 AAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEK 267
+ I L K K++ + + RS+V + P+ F + +
Sbjct: 418 EKQPKESTI----SIPSIYLELKVKLEN-EYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 268 I------HMKTILAVGELKTSENIY----------CASMTAMFAGSDFIKTSTGKEKTNA 311
H+K I + ++ TA A + T +
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 312 TI----PAGIIMCSAIKHF------HKLSGK-----KIGL-KPAGGISTFEDSVR 350
I P + +AI F + + K +I L I FE++ +
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI--FEEAHK 585
Score = 34.8 bits (79), Expect = 0.052
Identities = 30/177 (16%), Positives = 58/177 (32%), Gaps = 46/177 (25%)
Query: 12 RLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCEEKI------HMKTIL 65
+ I L K K++ + + RS+V + P+ F + ++ H+K I
Sbjct: 427 SIPSIYLELKVKLEN-EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 66 AVGELKTSENIYYASMTAMFAGSDFIKTSTGKEKTNATIPADLTRQFEAVDLSRLKNKKS 125
+ ++ F F+ ++K A L +LK K
Sbjct: 486 HPERMTLFRMVFLD-----F---RFL-----EQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 126 -----------LLLKIIEFI-------------DLTTLS-GDDTEAVVETLTLKAIQ 157
L+ I++F+ DL ++ + EA+ E K +Q
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE-AHKQVQ 588
Score = 28.3 bits (62), Expect = 5.1
Identities = 36/242 (14%), Positives = 70/242 (28%), Gaps = 82/242 (33%)
Query: 186 VVDVIK-VLDRENARDDVKVASVAAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSL 244
V D+ K +L +E + SG L L ++ + V ++ L
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAV----SGTLRL------FWTLLSKQEEMVQKFVEEVL 87
Query: 245 VLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTST 304
+N ++ L S +K + + + T I ++ +
Sbjct: 88 RINYKF--LMS---PIKTEQRQP----------SMMTRMYIEQRD--RLYNDNQVFA--- 127
Query: 305 GKEKTNATIPAGIIMCSAIKHFHKLSGKKIGLKPAGGI---------------------- 342
K N + + + KL + L+PA +
Sbjct: 128 ---KYNVSRL---------QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 343 --STFEDSVRWIYL--------VLIML-------GPDWLNKDLFRIGASSLLNNILQELE 385
+ + W+ L VL ML P+W ++ +++I EL
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 386 AL 387
L
Sbjct: 236 RL 237
>1kfw_A Chitinase B; TIM barrel, hydrolase; 1.74A {Arthrobacter SP} SCOP:
c.1.8.5 d.26.3.1
Length = 435
Score = 29.0 bits (65), Expect = 2.5
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 45 FSEVKQMKEKCEEKIHMKTILAVGELKTSENIYYASMT----AMFAGS--DFIKTSTGKE 98
F+++KQ+K K +K ++++G S+N A+ T S D
Sbjct: 105 FNQLKQLKAK---NPKLKVMISLGGWTWSKNFSKAAATEASRQKLVSSCIDLYIKGNLPN 161
Query: 99 KTNATIPADLTRQFEAVDL 117
F+ +D+
Sbjct: 162 FEGRGGAGAAAGIFDGIDI 180
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.369
Gapped
Lambda K H
0.267 0.0676 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,759,024
Number of extensions: 350738
Number of successful extensions: 805
Number of sequences better than 10.0: 1
Number of HSP's gapped: 736
Number of HSP's successfully gapped: 46
Length of query: 387
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 292
Effective length of database: 4,049,298
Effective search space: 1182395016
Effective search space used: 1182395016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.2 bits)