RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10251
(151 letters)
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 165 bits (420), Expect = 3e-52
Identities = 62/152 (40%), Positives = 91/152 (59%), Gaps = 27/152 (17%)
Query: 1 MFKATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQN 60
+ + L KVA++TAST+GIG AIA+RL+ +GA VV+SSRK+ NV++ V TLQ EG
Sbjct: 6 VERRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLS- 64
Query: 61 VSGVVCHVANTDERQKLFEH--------------------------CSEVVWDKIFDVNL 94
V+G VCHV ++R++L +E VWDKI VN+
Sbjct: 65 VTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNV 124
Query: 95 KSSFLLTQEVLPYMRKKKGGSIVYVSSIGGFK 126
K++ L+T+ V+P M K+ GGS++ VSS+G +
Sbjct: 125 KATVLMTKAVVPEMEKRGGGSVLIVSSVGAYH 156
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 142 bits (361), Expect = 4e-43
Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 27/146 (18%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
L G A++T ++GIG+AI + L+ GA V SR E +++ +E +++G V G V
Sbjct: 18 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLN-VEGSV 76
Query: 66 CHVANTDERQKLFEH--------------------------CSEVVWDKIFDVNLKSSFL 99
C + + ER KL + +E ++ I N ++++
Sbjct: 77 CDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYH 136
Query: 100 LTQEVLPYMRKKKGGSIVYVSSIGGF 125
L+Q P ++ + G+++++SSI GF
Sbjct: 137 LSQIAYPLLKASQNGNVIFLSSIAGF 162
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 140 bits (355), Expect = 2e-42
Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 25/144 (17%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
+ GKVAVIT S+ GIG AIA+ + EGA +V+ +R+ +++A +L+++ V V
Sbjct: 4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVA 63
Query: 66 CHVANTDE-------------------------RQKLFEHCSEVVWDKIFDVNLKSSFLL 100
VA + + ++ W +++ + ++ L
Sbjct: 64 VDVATPEGVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRL 123
Query: 101 TQEVLPYMRKKKGGSIVYVSSIGG 124
+ ++P MR + GG+I++ +SI
Sbjct: 124 ARGLVPGMRARGGGAIIHNASICA 147
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 139 bits (354), Expect = 3e-42
Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 27/146 (18%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
L G A++T + GIG+ I + L++ GASV SR + +N + + +G + V V
Sbjct: 6 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFK-VEASV 64
Query: 66 CHVANTDERQKLFEH--------------------------CSEVVWDKIFDVNLKSSFL 99
C +++ ERQ+L + + I +N ++++
Sbjct: 65 CDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYH 124
Query: 100 LTQEVLPYMRKKKGGSIVYVSSIGGF 125
L+ P+++ + G++V++SS+ G
Sbjct: 125 LSVLAHPFLKASERGNVVFISSVSGA 150
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 132 bits (335), Expect = 3e-39
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 27/146 (18%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
L K ++T T+GIG AI + + GA + +R E +N+ + QK+G Q V+G V
Sbjct: 11 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQ-VTGSV 69
Query: 66 CHVANTDERQKLFEHCSEVV--------------------------WDKIFDVNLKSSFL 99
C + ER+KL + S + + NL+S++
Sbjct: 70 CDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYH 129
Query: 100 LTQEVLPYMRKKKGGSIVYVSSIGGF 125
L+Q P ++ G+I+++SSI G
Sbjct: 130 LSQLAHPLLKASGCGNIIFMSSIAGV 155
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 132 bits (335), Expect = 3e-39
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 22/140 (15%)
Query: 7 LVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQ-NVSGVV 65
L GK A++T ST GIG AIA L AEGA+V+I+ R+E NVN+ ++ ++ + + VV
Sbjct: 8 LKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVV 67
Query: 66 CHVANTDERQKLFEHCSEV---------------------VWDKIFDVNLKSSFLLTQEV 104
+ Q + E +V W K+F+VN+ S LT+
Sbjct: 68 ADLGTEQGCQDVIEKYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSY 127
Query: 105 LPYMRKKKGGSIVYVSSIGG 124
L M ++K G +++++S
Sbjct: 128 LKKMIERKEGRVIFIASEAA 147
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 130 bits (329), Expect = 1e-38
Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 25/143 (17%)
Query: 7 LVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGH-QNVSGVV 65
+ GK+AV+TA + G+GFA A L+ GA +++ SR + A + V V
Sbjct: 5 IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVA 64
Query: 66 CHVANTDERQKLFEHCSE------VV------------------WDKIFDVNLKSSFLLT 101
+ + +LFE + +V WD+ + + +S+ +
Sbjct: 65 GDIREPGDIDRLFEKARDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVG 124
Query: 102 QEVLPYMRKKKGGSIVYVSSIGG 124
+ M +K G +VY+ S+
Sbjct: 125 RRAAEQMVEKGWGRMVYIGSVTL 147
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 127 bits (323), Expect = 1e-37
Identities = 39/144 (27%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
RL GK A+IT + GIG IA + GASVV+S N V+ +Q+ G Q
Sbjct: 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQ-AFACR 66
Query: 66 CHVANTDERQKLFEHC------------------------SEVVWDKIFDVNLKSSFLLT 101
C + + E L + + + +++N+ S F L+
Sbjct: 67 CDITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLS 126
Query: 102 QEVLPYMRKKKGGSIVYVSSIGGF 125
Q V P M K GG I+ ++S+
Sbjct: 127 QLVAPEMEKNGGGVILTITSMAAE 150
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 126 bits (320), Expect = 5e-37
Identities = 31/148 (20%), Positives = 51/148 (34%), Gaps = 28/148 (18%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQ--NVSG 63
+ ++T GIG +A L A GASV+I R + AV+ L+ G +
Sbjct: 8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRY 67
Query: 64 VVCHVANTDERQKLFEHC--------------------------SEVVWDKIFDVNLKSS 97
+ N DE + + W + D+N+ +
Sbjct: 68 EPTDITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGT 127
Query: 98 FLLTQEVLPYMRKKKGGSIVYVSSIGGF 125
+ + M + GGS V +SSI
Sbjct: 128 MYVLKHAAREMVRGGGGSFVGISSIAAS 155
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 123 bits (311), Expect = 6e-36
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 25/143 (17%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
L VA++T + GIG AIA + GASVV++ K +++ G + G+
Sbjct: 9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGK-AIGLE 67
Query: 66 CHVANTDERQKLFEHC------------------------SEVVWDKIFDVNLKSSFLLT 101
C+V + R+ + + ++ F +NL S F L+
Sbjct: 68 CNVTDEQHREAVIKAALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLS 127
Query: 102 QEVLPYMRKKKGGSIVYVSSIGG 124
Q P+M+K GG+I+ +SS+ G
Sbjct: 128 QLAAPHMQKAGGGAILNISSMAG 150
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 123 bits (310), Expect = 1e-35
Identities = 43/146 (29%), Positives = 60/146 (41%), Gaps = 27/146 (18%)
Query: 6 RLVGKVAVIT-ASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGV 64
L GKV ++T A+ GIG A+R EGA VVIS E + + + L G V V
Sbjct: 19 LLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAV 78
Query: 65 VCHVANTDE-------------------------RQKLFEHCSEVVWDKIFDVNLKSSFL 99
VC V +T+ Q ++ WD++ +V L S
Sbjct: 79 VCDVTSTEAVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMR 138
Query: 100 LTQEVLPYMRK-KKGGSIVYVSSIGG 124
T+ L Y R GG IV +S+ G
Sbjct: 139 ATRAALRYFRGVDHGGVIVNNASVLG 164
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 122 bits (308), Expect = 2e-35
Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 26/145 (17%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEG-HQNVSGV 64
L VAV+T + GIG A + L GA+V +R + A L++ +
Sbjct: 5 DLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFAS 64
Query: 65 VCHVANTDE-------------------------RQKLFEHCSEVVWDKIFDVNLKSSFL 99
VC V + + R F ++ W + + S
Sbjct: 65 VCDVLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIH 124
Query: 100 LTQEVLPYMRKKKGGSIVYVSSIGG 124
+ LP + + +IV V+S+
Sbjct: 125 PVRAFLPQLESRADAAIVCVNSLLA 149
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 121 bits (306), Expect = 4e-35
Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 27/145 (18%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
+ GKV ++T + IG A A RL+ EG ++ + + KA +++++G + V
Sbjct: 4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVE-ARSYV 62
Query: 66 CHVANTDE--------------------------RQKLFEHCSEVVWDKIFDVNLKSSFL 99
C V + + + + ++ +N+ +F
Sbjct: 63 CDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFH 122
Query: 100 LTQEVLPYMRKKKGGSIVYVSSIGG 124
+ + V M + G IV +S+ G
Sbjct: 123 VLKAVSRQMITQNYGRIVNTASMAG 147
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 121 bits (305), Expect = 4e-35
Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 28/152 (18%)
Query: 3 KATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQ--N 60
L G+V ++T + GIG A A+ +A GASVV+ R E+++ + + ++ G
Sbjct: 8 HPELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPL 67
Query: 61 VSGVVCHVANTDERQKL--------------------------FEHCSEVVWDKIFDVNL 94
+ + A + ++L E + + ++ VN+
Sbjct: 68 IIALNLENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNV 127
Query: 95 KSSFLLTQEVLPYMRKKKGGSIVYVSSIGGFK 126
++F+LT+ +LP +++ + SI + SS G K
Sbjct: 128 NATFMLTRALLPLLKRSEDASIAFTSSSVGRK 159
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 120 bits (304), Expect = 9e-35
Identities = 23/147 (15%), Positives = 53/147 (36%), Gaps = 28/147 (19%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
L KV VI+ +G +A+R + +GA +V+++R + + + G + V
Sbjct: 8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRR-ALSVG 66
Query: 66 CHVANTDE--------------------------RQKLFEHCSEVVWDKIFDVNLKSSFL 99
+ + + K F + + ++ + +
Sbjct: 67 TDITDDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALR 126
Query: 100 LTQEVLPYMRKKKGGSIVYVSSIGGFK 126
L Q P + ++ G++V V+S+
Sbjct: 127 LIQGFTPAL-EESKGAVVNVNSMVVRH 152
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 120 bits (304), Expect = 1e-34
Identities = 30/151 (19%), Positives = 49/151 (32%), Gaps = 25/151 (16%)
Query: 1 MFKATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQN 60
+F L KVA IT GIGF IA+ G VI+SR V A L +
Sbjct: 19 LFCPDLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRR 78
Query: 61 VSGVVCHVANTDE-------------------------RQKLFEHCSEVVWDKIFDVNLK 95
+ V S + + D++
Sbjct: 79 CLPLSMDVRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTS 138
Query: 96 SSFLLTQEVLPYMRKKKGGSIVYVSSIGGFK 126
+F +++ + + GG IV +++ G +
Sbjct: 139 GTFNVSRVLYEKFFRDHGGVIVNITATLGNR 169
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 119 bits (302), Expect = 3e-34
Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 27/150 (18%)
Query: 5 TRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGV 64
VA+IT + GIG A A L+A+G +V R + V + + + G Q +
Sbjct: 24 MNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQ-AIAL 82
Query: 65 VCHVANTDERQKLFEHC--------------------------SEVVWDKIFDVNLKSSF 98
V++ + + WD+ VNL+ +F
Sbjct: 83 EADVSDELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTF 142
Query: 99 LLTQEVLPYMRKKKGGSIVYVSSIGGFKQF 128
L +PY++++ GG+IV VSSI G + F
Sbjct: 143 LTLHLTVPYLKQRGGGAIVVVSSINGTRTF 172
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 119 bits (300), Expect = 3e-34
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 27/146 (18%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
L KV ++T + GIG AIAK+ + + VV E +N+ V+ L+ G + V GV
Sbjct: 4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKE-VLGVK 62
Query: 66 CHVANTDERQKLFEHC--------------------------SEVVWDKIFDVNLKSSFL 99
V+ + ++ S+ +W+++ VNL S+F
Sbjct: 63 ADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFY 122
Query: 100 LTQEVLPYMRKKKGGSIVYVSSIGGF 125
++ V+P M K+ G IV +SI G
Sbjct: 123 SSRAVIPIMLKQGKGVIVNTASIAGI 148
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 119 bits (300), Expect = 3e-34
Identities = 30/152 (19%), Positives = 59/152 (38%), Gaps = 28/152 (18%)
Query: 3 KATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVS 62
K L ++ ++T +++GIG A + GA+V++ R E + + + +E +
Sbjct: 6 KQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQ 65
Query: 63 GVVCHVANTDERQ----------------------------KLFEHCSEVVWDKIFDVNL 94
+ + + VW + VN+
Sbjct: 66 WFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNV 125
Query: 95 KSSFLLTQEVLPYMRKKKGGSIVYVSSIGGFK 126
++F+LTQ +LP + K GS+V+ SS G +
Sbjct: 126 NATFMLTQALLPLLLKSDAGSLVFTSSSVGRQ 157
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 119 bits (300), Expect = 4e-34
Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 32/151 (21%)
Query: 5 TRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEG--HQNVS 62
TR KVA+IT S+ GIG A A + EGA V I+ R + + + + G QNV+
Sbjct: 2 TRFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVN 61
Query: 63 GVVCHVANTDERQKLFEHC-----------------------------SEVVWDKIFDVN 93
VV V + ++ S +D ++N
Sbjct: 62 SVVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLN 121
Query: 94 LKSSFLLTQEVLPYMRKKKGGSIVYVSSIGG 124
L+S LT++ +P++ G IV +SSI
Sbjct: 122 LRSVIALTKKAVPHL-SSTKGEIVNISSIAS 151
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 119 bits (300), Expect = 4e-34
Identities = 44/146 (30%), Positives = 63/146 (43%), Gaps = 31/146 (21%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
RL K+AVIT +T GIG A AKR AEGA V I+ R++ ++ A+ + G G+
Sbjct: 26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---GG-GAVGIQ 81
Query: 66 CHVANTDERQKLFEHC-------------------------SEVVWDKIFDVNLKSSFLL 100
AN E +L+E +E +D FD N+K
Sbjct: 82 ADSANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFT 141
Query: 101 TQEVLPYMRKKKGGSIVYVSSIGGFK 126
Q+ LP + +G S+V S G
Sbjct: 142 VQKALPLLA--RGSSVVLTGSTAGST 165
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 118 bits (298), Expect = 5e-34
Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 27/141 (19%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
RL GKV ++TA+ +GIG A A + EGA V+ + E ++ L+K + V
Sbjct: 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE----SKLQELEKYP--GIQTRV 56
Query: 66 CHVANTDE---------------------RQKLFEHCSEVVWDKIFDVNLKSSFLLTQEV 104
V + C E WD ++N++S +L+ +
Sbjct: 57 LDVTKKKQIDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAF 116
Query: 105 LPYMRKKKGGSIVYVSSIGGF 125
LP M +K G+I+ +SS+
Sbjct: 117 LPKMLAQKSGNIINMSSVASS 137
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 118 bits (299), Expect = 5e-34
Identities = 45/146 (30%), Positives = 62/146 (42%), Gaps = 27/146 (18%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
RL +VA++T + IG A L+ GA V+I+ E+ KAVE L+ EGH VS VV
Sbjct: 10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHD-VSSVV 68
Query: 66 CHVANTDERQKLFEHC--------------------------SEVVWDKIFDVNLKSSFL 99
V NT+ Q ++ W K D+NL F
Sbjct: 69 MDVTNTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFR 128
Query: 100 LTQEVLPYMRKKKGGSIVYVSSIGGF 125
Q V M ++K G IV + S+ G
Sbjct: 129 SCQAVGRIMLEQKQGVIVAIGSMSGL 154
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 117 bits (296), Expect = 9e-34
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 28/146 (19%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
RL K+AVIT GIG AIA+R + EGA + I+ + +A ++ G + V V
Sbjct: 4 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP--EAEAAIRNLGRR-VLTVK 60
Query: 66 CHVANTDE-------------------------RQKLFEHCSEVVWDKIFDVNLKSSFLL 100
C V+ + F+ + W K F++N+ S FL+
Sbjct: 61 CDVSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLM 120
Query: 101 TQEVLPYMRKKKGGSIVYVSSIGGFK 126
+ +P M++ G I+ ++S +
Sbjct: 121 AKAFVPGMKRNGWGRIINLTSTTYWL 146
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 118 bits (297), Expect = 9e-34
Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 29/151 (19%)
Query: 1 MFKATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQN 60
+ RL GK A+IT +T+GIG IA+ +A GA +V+S R S ++ A L ++ +
Sbjct: 15 VL---RLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTD 71
Query: 61 VSGVVCHVANTDE-------------------------RQKLFEHCSEVVWDKIFDVNLK 95
V V +A D + ++D VNL+
Sbjct: 72 VHTVAIDLAEPDAPAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLR 131
Query: 96 SSFLLTQEVLPYMRK-KKGGSIVYVSSIGGF 125
+ LL V M +GG+I+ V+S
Sbjct: 132 APALLASAVGKAMVAAGEGGAIITVASAAAL 162
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 117 bits (295), Expect = 1e-33
Identities = 33/148 (22%), Positives = 53/148 (35%), Gaps = 29/148 (19%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
R KV ++T S GIG A A+ L+ EGA+VV++ + + +G V
Sbjct: 6 RFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGT-AISVA 64
Query: 66 CHVANTDE----------------------------RQKLFEHCSEVVWDKIFDVNLKSS 97
V++ + + + K VNL +
Sbjct: 65 VDVSDPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGA 124
Query: 98 FLLTQEVLPYMRKKKGGSIVYVSSIGGF 125
T+ V M K+ GG+IV SS +
Sbjct: 125 LWCTRAVYKKMTKRGGGAIVNQSSTAAW 152
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 117 bits (295), Expect = 2e-33
Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 31/146 (21%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
GK A++ T G+G A +RL GA V+++ R ESN+ + E G V +
Sbjct: 5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF---GP-RVHALR 60
Query: 66 CHVANTDERQKLFEHC-------------------------SEVVWDKIFDVNLKSSFLL 100
+A+ +E L SE +D+ F VN K +F
Sbjct: 61 SDIADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFT 120
Query: 101 TQEVLPYMRKKKGGSIVYVSSIGGFK 126
Q + P +R +GGSIV+ SS+
Sbjct: 121 VQRLTPLIR--EGGSIVFTSSVADEG 144
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 116 bits (294), Expect = 3e-33
Identities = 36/149 (24%), Positives = 57/149 (38%), Gaps = 28/149 (18%)
Query: 1 MFKATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQN 60
MF L G+ V+T T+GIG IA + GA+V ++ R ++++ V L + G
Sbjct: 5 MF---DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGK 61
Query: 61 VSGVVCHVANTDE-------------------------RQKLFEHCSEVVWDKIFDVNLK 95
V GV V++ + + + IF VN+
Sbjct: 62 VIGVQTDVSDRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVN 121
Query: 96 SSFLLTQEVLPYMRKKKGGSIVYVSSIGG 124
+F Q L + G +V SSI G
Sbjct: 122 GTFYAVQACLDALIASGSGRVVLTSSITG 150
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 117 bits (296), Expect = 3e-33
Identities = 40/152 (26%), Positives = 59/152 (38%), Gaps = 29/152 (19%)
Query: 1 MFKATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQN 60
L G+VA++T GIG AI K L G++VVI+SRK + A + LQ
Sbjct: 10 YLAPGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPT 69
Query: 61 ----VSGVVCHVANTDE-------------------------RQKLFEHCSEVVWDKIFD 91
V + C++ N +E EH S W + +
Sbjct: 70 KQARVIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLE 129
Query: 92 VNLKSSFLLTQEVLPYMRKKKGGSIVYVSSIG 123
NL +F + + V K+ GGSIV +
Sbjct: 130 TNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT 161
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 116 bits (294), Expect = 4e-33
Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 32/149 (21%)
Query: 5 TRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQ--NVS 62
R K +IT S+ GIG A + EGA+V I+ R + + + + K G V+
Sbjct: 2 PRFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVN 61
Query: 63 GVVCHVANTDERQKLFEH-----------------------------CSEVVWDKIFDVN 93
VV V D + ++ ++ K +N
Sbjct: 62 SVVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLN 121
Query: 94 LKSSFLLTQEVLPYMRKKKGGSIVYVSSI 122
L++ +T++V P++ G IV VSSI
Sbjct: 122 LQAVIEMTKKVKPHL-VASKGEIVNVSSI 149
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 116 bits (294), Expect = 6e-33
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 30/147 (20%)
Query: 5 TRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQ--NVS 62
R GK +IT S+ GIG + A + EGA V I+ R E + + + + K G ++
Sbjct: 22 ARFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKIN 81
Query: 63 GVVCHVANTDERQKLFEH---------------------------CSEVVWDKIFDVNLK 95
VV V + + ++ K F +N +
Sbjct: 82 AVVADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQ 141
Query: 96 SSFLLTQEVLPYMRKKKGGSIVYVSSI 122
+ +TQ+ ++ K G IV VSSI
Sbjct: 142 AVIEMTQKTKEHL-IKTKGEIVNVSSI 167
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 115 bits (291), Expect = 9e-33
Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 27/149 (18%)
Query: 4 ATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQ-NVS 62
TR +V +IT G+G A A RL+AEGA + + + + + + V
Sbjct: 8 TTRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVL 67
Query: 63 GVVCHVANTDERQKLFEHC--------------------------SEVVWDKIFDVNLKS 96
V V++ + + + +DK+ +NL+
Sbjct: 68 TTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRG 127
Query: 97 SFLLTQEVLPYMRKKKGGSIVYVSSIGGF 125
FL ++VL MR++ G +V +S+GG
Sbjct: 128 VFLGLEKVLKIMREQGSGMVVNTASVGGI 156
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 115 bits (291), Expect = 1e-32
Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 27/147 (18%)
Query: 5 TRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGV 64
+RL GK+A++T ++ GIG A A + EGA VV+++R + + + + + G + + +
Sbjct: 4 SRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGE-AAAL 62
Query: 65 VCHVANTDERQKLFEHC--------------------------SEVVWDKIFDVNLKSSF 98
V + + L E S W + D NL S+F
Sbjct: 63 AGDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAF 122
Query: 99 LLTQEVLPYMRKKKGGSIVYVSSIGGF 125
L + +P + GGS+ + SS G
Sbjct: 123 LAAKYQVPAIAALGGGSLTFTSSFVGH 149
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 116 bits (293), Expect = 1e-32
Identities = 35/151 (23%), Positives = 55/151 (36%), Gaps = 26/151 (17%)
Query: 1 MFKATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQN 60
M GKVA IT G+G + LS+ GA VI+SRK + E + +
Sbjct: 18 MLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNK 77
Query: 61 VSGVVCHVANTDE-------------------------RQKLFEHCSEVVWDKIFDVNLK 95
V + C V + D E S W I D+ L
Sbjct: 78 VHAIQCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLN 137
Query: 96 SSFLLTQEVLPYMRK-KKGGSIVYVSSIGGF 125
+ +T E+ + K +KG + + +++I
Sbjct: 138 GTAFVTLEIGKQLIKAQKGAAFLSITTIYAE 168
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 115 bits (290), Expect = 1e-32
Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 27/148 (18%)
Query: 5 TRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGV 64
+ L G+VAV+T ++ GIG AIA++L + GA VV+++R + + G +
Sbjct: 25 SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGE-AESH 83
Query: 65 VCHVANTDERQKLFEHCSE-------VV-------------------WDKIFDVNLKSSF 98
C ++++D +V WD + VNLK+ +
Sbjct: 84 ACDLSHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPY 143
Query: 99 LLTQEVLPYMRKKKGGSIVYVSSIGGFK 126
LL + P M K G I+ +SS+ G
Sbjct: 144 LLLRAFAPAMIAAKRGHIINISSLAGKN 171
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 113 bits (286), Expect = 3e-32
Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 27/142 (19%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
L G+ ++T + +GIG + L A GA VV SR +++++ V + V
Sbjct: 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPG-----IEPVC 58
Query: 66 CHVANTDE---------------------RQKLFEHCSEVVWDKIFDVNLKSSFLLTQEV 104
+ + + + F ++ +D+ F+VNL++ ++Q V
Sbjct: 59 VDLGDWEATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIV 118
Query: 105 LPYMRKKK-GGSIVYVSSIGGF 125
+ + G+IV VSS
Sbjct: 119 ARGLIARGVPGAIVNVSSQCSQ 140
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 114 bits (287), Expect = 4e-32
Identities = 34/150 (22%), Positives = 50/150 (33%), Gaps = 30/150 (20%)
Query: 1 MFKATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQN 60
M L G+ A++T ++GIG AIA+ L GA+V I+ V L+ G
Sbjct: 4 MAGIFDLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGF-- 61
Query: 61 VSGVVCHVANTDE-------------------------RQKLFEHCSEVVWDKIFDVNLK 95
V V + ++ WD FDVN +
Sbjct: 62 --AVEVDVTKRASVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNAR 119
Query: 96 SSFLLTQEVLPYMRK-KKGGSIVYVSSIGG 124
FL Q + G IV +S+
Sbjct: 120 GVFLANQIACRHFLASNTKGVIVNTASLAA 149
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 114 bits (287), Expect = 4e-32
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 28/148 (18%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
G++A++T G+G IA+ LSAEG SVVI+ R+ ++ A + V VV
Sbjct: 30 SGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVV 89
Query: 66 CHVANTDERQKLFEHC--------------------------SEVVWDKIFDVNLKSSFL 99
C V + D+ LF + W+ I NL +FL
Sbjct: 90 CDVGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFL 149
Query: 100 LTQEVLPYMRKK--KGGSIVYVSSIGGF 125
TQ M+ + +GG I+ SI
Sbjct: 150 CTQHAFRMMKAQTPRGGRIINNGSISAQ 177
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 113 bits (286), Expect = 5e-32
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 25/145 (17%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
L G+VA++T + G+GF IA+ L+ G SVV++SR ++A + L ++
Sbjct: 18 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFR 77
Query: 66 CHVANTDERQKLFEHCSEVV-------------------------WDKIFDVNLKSSFLL 100
C V+N +E +KL E E + ++ +VNL ++ +
Sbjct: 78 CDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYV 137
Query: 101 TQEVLPYMRKKKGGSIVYVSSIGGF 125
+E +R+ SI+ + S+
Sbjct: 138 CREAFSLLRESDNPSIINIGSLTVE 162
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 113 bits (286), Expect = 5e-32
Identities = 36/151 (23%), Positives = 59/151 (39%), Gaps = 29/151 (19%)
Query: 1 MFKATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQN 60
F++ L +V ++T GIG A A+ + GA VV++ E + + G +
Sbjct: 19 YFQSMDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI---GSK- 74
Query: 61 VSGVVCHVANTDE-------------------------RQKLFEHCSEVVWDKIFDVNLK 95
GV V++ + E WD+I VN+K
Sbjct: 75 AFGVRVDVSSAKDAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVK 134
Query: 96 SSFLLTQEVLPYMRKKKGGSIVYVSSIGGFK 126
FL ++ V+P MR+ GGSI+ +S
Sbjct: 135 GIFLCSKYVIPVMRRNGGGSIINTTSYTATS 165
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 114 bits (287), Expect = 6e-32
Identities = 33/149 (22%), Positives = 55/149 (36%), Gaps = 28/149 (18%)
Query: 1 MFKATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQN 60
MF L + ++T T+GIG IA + GA+V +++R ++ L + G N
Sbjct: 36 MF---DLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGN 92
Query: 61 VSGVVCHVANTDERQKLFEHCSE-------VV------------------WDKIFDVNLK 95
V GV V++ + V ++ DVN+K
Sbjct: 93 VIGVRLDVSDPGSCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVK 152
Query: 96 SSFLLTQEVLPYMRKKKGGSIVYVSSIGG 124
+ Q L + G ++ SSI G
Sbjct: 153 GTVYTVQACLAPLTASGRGRVILTSSITG 181
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 113 bits (284), Expect = 8e-32
Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 37/146 (25%)
Query: 5 TRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGV 64
+ L KV ++T ++ GIG AIA+R EG+ V+ S + G +
Sbjct: 4 SDLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHD------------PGEAKYDHI 51
Query: 65 VCHVANTDE-------------------------RQKLFEHCSEVVWDKIFDVNLKSSFL 99
C V N D+ E S W +I DVNL +
Sbjct: 52 ECDVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYY 111
Query: 100 LTQEVLPYMRKKKGGSIVYVSSIGGF 125
++ +PYM + + SIV +SS+
Sbjct: 112 ASKFAIPYMIRSRDPSIVNISSVQAS 137
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 112 bits (283), Expect = 9e-32
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 28/143 (19%)
Query: 7 LVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVC 66
L GK A++T ST GIG IA+ L+ GA++V++ + A+ + + G +
Sbjct: 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGF--GDPAPALAEIARHGVK-AVHHPA 58
Query: 67 HVANTDERQKLFEHCSEV-------------------------VWDKIFDVNLKSSFLLT 101
+++ + + LF WDKI +NL + F T
Sbjct: 59 DLSDVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGT 118
Query: 102 QEVLPYMRKKKGGSIVYVSSIGG 124
+ LP MR + G I+ ++S+ G
Sbjct: 119 RLALPGMRARNWGRIINIASVHG 141
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 113 bits (284), Expect = 1e-31
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 21/141 (14%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGH-QNVSGV 64
+ GKVA++T + +GIG A A+ L +GA V + + L ++ Q +
Sbjct: 4 MVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFI 63
Query: 65 VCHVANTDERQKLFEHC-----------------SEVVWDKIFDVNLKSSFLLTQEVLPY 107
C VA+ + + F +E W+K +NL S T L Y
Sbjct: 64 QCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDY 123
Query: 108 MRKKK---GGSIVYVSSIGGF 125
M K+ GG I+ +SS+ G
Sbjct: 124 MSKQNGGEGGIIINMSSLAGL 144
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 112 bits (283), Expect = 1e-31
Identities = 31/146 (21%), Positives = 51/146 (34%), Gaps = 28/146 (19%)
Query: 8 VGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVCH 67
+ +VA++T ++ G G AIA R A G V + + T V V
Sbjct: 1 MSRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRAD 60
Query: 68 VANTDERQKLFEHC----------------------------SEVVWDKIFDVNLKSSFL 99
VA+ + +DK+ VN++ FL
Sbjct: 61 VADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFL 120
Query: 100 LTQEVLPYMRKKKGGSIVYVSSIGGF 125
+ VLP+M + G IV ++S+
Sbjct: 121 GCRAVLPHMLLQGAGVIVNIASVASL 146
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 112 bits (282), Expect = 1e-31
Identities = 35/142 (24%), Positives = 56/142 (39%), Gaps = 27/142 (19%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
G A++T + +GIG K L A GA VV +R S++ + + V
Sbjct: 4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPG-----IEPVC 58
Query: 66 CHVANTDE---------------------RQKLFEHCSEVVWDKIFDVNLKSSFLLTQEV 104
+ + D + F ++ +D+ F VNL+S F ++Q V
Sbjct: 59 VDLGDWDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMV 118
Query: 105 LPYMRKKK-GGSIVYVSSIGGF 125
M + GSIV VSS+
Sbjct: 119 ARDMINRGVPGSIVNVSSMVAH 140
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 113 bits (285), Expect = 1e-31
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 26/145 (17%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
L GK+A++T ++ GIGFAIA + GA++V + + V++ + + G G V
Sbjct: 31 SLKGKIALVTGASYGIGFAIASAYAKAGATIVFNDINQELVDRGMAAYKAAGIN-AHGYV 89
Query: 66 CHVANTDERQKLFEHCSEVV-------------------------WDKIFDVNLKSSFLL 100
C V + D Q + V + ++ D++L + F++
Sbjct: 90 CDVTDEDGIQAMVAQIESEVGIIDILVNNAGIIRRVPMIEMTAAQFRQVIDIDLNAPFIV 149
Query: 101 TQEVLPYMRKKKGGSIVYVSSIGGF 125
++ V+P M KK G I+ + S+
Sbjct: 150 SKAVIPSMIKKGHGKIINICSMMSE 174
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 111 bits (281), Expect = 2e-31
Identities = 22/141 (15%), Positives = 43/141 (30%), Gaps = 35/141 (24%)
Query: 9 GKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVCHV 68
++T ++GIG A+ + L VI+ + Q +N+ + +
Sbjct: 4 MANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQ----------QSFSAENLKFIKADL 53
Query: 69 ANTDE-----------------------RQKLFEHCSEVVWDKIFDVNLKSSFLLTQEVL 105
+ + K+ D+N+ SS + +
Sbjct: 54 TKQQDITNVLDIIKNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLE 113
Query: 106 PYMRKKKGGSIVYVSSIGGFK 126
+ K G SIV+ S F
Sbjct: 114 NNL--KVGASIVFNGSDQCFI 132
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 111 bits (281), Expect = 2e-31
Identities = 29/149 (19%), Positives = 57/149 (38%), Gaps = 30/149 (20%)
Query: 1 MFKATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQN 60
+F RL G A +T + GIG I + +A GA +++ R+ + +++A + L
Sbjct: 6 VF---RLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAV--- 59
Query: 61 VSGVVCHVANTDE------------------------RQKLFEHCSEVVWDKIFDVNLKS 96
+ +V V + + R + W ++ VN+
Sbjct: 60 AARIVADVTDAEAMTAAAAEAEAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDG 119
Query: 97 SFLLTQEVLPYMRKKKGGSIVYVSSIGGF 125
F ++ M + G+IV + S+ G
Sbjct: 120 MFWASRAFGRAMVARGAGAIVNLGSMSGT 148
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 111 bits (281), Expect = 2e-31
Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 27/148 (18%)
Query: 4 ATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSG 63
+ + KV +IT + G+G +A R + EGA VVI+ R + + +A +++ Q +
Sbjct: 1 SNAMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQ-ILT 59
Query: 64 VVCHVANTDERQKLFEHC-------------------------SEVVWDKIFDVNLKSSF 98
V V NTD+ QK+ E S W+ + ++ L +F
Sbjct: 60 VQMDVRNTDDIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTF 119
Query: 99 LLTQEVLPYMRKKK-GGSIVYVSSIGGF 125
+Q + Y +K G+I+ + + +
Sbjct: 120 YCSQAIGKYWIEKGIKGNIINMVATYAW 147
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 112 bits (282), Expect = 2e-31
Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 18/136 (13%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQ----KEGHQNV 61
KVA++T + GIG A+ L GA VV S E + + + E + V
Sbjct: 11 EFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHFKIDVTNE--EEV 68
Query: 62 SGVVCHVANT----D--------ERQKLFEHCSEVVWDKIFDVNLKSSFLLTQEVLPYMR 109
V D E+ +W +I DVN+ S+L+ + +P M
Sbjct: 69 KEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVML 128
Query: 110 KKKGGSIVYVSSIGGF 125
GSI+ ++S+ +
Sbjct: 129 AIGHGSIINIASVQSY 144
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 112 bits (282), Expect = 2e-31
Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 26/145 (17%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSR-KESNVNKAVETLQKEGHQNVSGV 64
++ K AVIT ST GIG AIA+ L+ GA++V++ + + + V
Sbjct: 22 SMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHH 81
Query: 65 VCHVANTDERQKLFEHCSEV-------------------------VWDKIFDVNLKSSFL 99
+ E + ++ WD+I VNL SSF
Sbjct: 82 PADMTKPSEIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFH 141
Query: 100 LTQEVLPYMRKKKGGSIVYVSSIGG 124
+ +P M+KK G I+ ++S G
Sbjct: 142 TIRGAIPPMKKKGWGRIINIASAHG 166
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 111 bits (280), Expect = 2e-31
Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 30/151 (19%)
Query: 1 MFKATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQN 60
+F L GK A++T S G+GFA A+ L+A GA V+++ + + + ++V+TL ++G+
Sbjct: 4 LF---DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYD- 59
Query: 61 VSGVVCHVANTDERQKLFEHCSEVV-------------------------WDKIFDVNLK 95
GV V + + F W K+ D NL
Sbjct: 60 AHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLT 119
Query: 96 SSFLLTQEVLPYMRKKK-GGSIVYVSSIGGF 125
S+FL+++ M + GG I+ + S+
Sbjct: 120 SAFLVSRSAAKRMIARNSGGKIINIGSLTSQ 150
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 111 bits (280), Expect = 3e-31
Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 37/146 (25%)
Query: 5 TRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGV 64
GKVA++T + GIG A+ L A GA V ++ R + + + +
Sbjct: 24 QGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAADL------------HL 71
Query: 65 VCHVANTDE-------------------------RQKLFEHCSEVVWDKIFDVNLKSSFL 99
+ + ++ W VN+++ F
Sbjct: 72 PGDLREAAYADGLPGAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFR 131
Query: 100 LTQEVLPYMRKKKGGSIVYVSSIGGF 125
+ + +P M GG+IV V+S G
Sbjct: 132 ICRAAIPLMAAAGGGAIVNVASCWGL 157
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 111 bits (281), Expect = 4e-31
Identities = 37/151 (24%), Positives = 58/151 (38%), Gaps = 35/151 (23%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
+L G+VA+IT G+G A+ R AEGA V + + + + G N GVV
Sbjct: 2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH---GG-NAVGVV 57
Query: 66 CHVANTDERQKLFEHC------------------------------SEVVWDKIFDVNLK 95
V + ++++ E C + +D IF VN+K
Sbjct: 58 GDVRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVK 117
Query: 96 SSFLLTQEVLPYMRKKKGGSIVYVSSIGGFK 126
+ LP + GS+V+ S GF
Sbjct: 118 GYIHAVKACLPALV-SSRGSVVFTISNAGFY 147
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 111 bits (280), Expect = 4e-31
Identities = 33/147 (22%), Positives = 55/147 (37%), Gaps = 28/147 (19%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
L GKVA +T S+ GIG+A+A+ + GA V I KA + G
Sbjct: 31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVH-SKAYK 89
Query: 66 CHVANTDERQKLFEHCSE-------VV--------------------WDKIFDVNLKSSF 98
C++++ ++ + V W+KI V+L +
Sbjct: 90 CNISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVY 149
Query: 99 LLTQEVLPYMRKKKGGSIVYVSSIGGF 125
+ + +K GS++ SSI G
Sbjct: 150 YCSHNIGKIFKKNGKGSLIITSSISGK 176
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 110 bits (278), Expect = 5e-31
Identities = 38/153 (24%), Positives = 56/153 (36%), Gaps = 34/153 (22%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
+ G+V V+T ++ GIG IA +L GA+V I+ R + + Q G Q V VV
Sbjct: 2 PMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCV-PVV 60
Query: 66 CHVANTDERQKLFEH---------------------------------CSEVVWDKIFDV 92
C + E + LFE +WD I +V
Sbjct: 61 CDSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNV 120
Query: 93 NLKSSFLLTQEVLPYMRKKKGGSIVYVSSIGGF 125
L+ + + M G IV +SS G
Sbjct: 121 GLRGHYFCSVYGARLMVPAGQGLIVVISSPGSL 153
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 111 bits (279), Expect = 5e-31
Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 32/151 (21%)
Query: 1 MFKATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQN 60
M TR GKV V+T GIG I + GA VVI + ES + L
Sbjct: 1 MATGTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPG----- 55
Query: 61 VSGVVCHVANTDE--------------------------RQKLFEHCSEVVWDKIFDVNL 94
++C V D+ + E S + ++ ++NL
Sbjct: 56 AVFILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNL 115
Query: 95 KSSFLLTQEVLPYMRKKKGGSIVYVSSIGGF 125
++ LT+ LPY+R K G+++ +SS+ G
Sbjct: 116 LGTYTLTKLALPYLR-KSQGNVINISSLVGA 145
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 111 bits (279), Expect = 6e-31
Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 29/146 (19%)
Query: 5 TRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGV 64
L GKVA++T + GIG A+A+RL+ EG V+ + + A + G +
Sbjct: 25 PDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI---GCG-AAAC 80
Query: 65 VCHVANTDE-------------------------RQKLFEHCSEVVWDKIFDVNLKSSFL 99
V++ + + +D++ +NL+ ++L
Sbjct: 81 RVDVSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWL 140
Query: 100 LTQEVLPYMRKKKGGSIVYVSSIGGF 125
T+ P M ++ GG+IV +SS+ G
Sbjct: 141 CTKHAAPRMIERGGGAIVNLSSLAGQ 166
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 110 bits (277), Expect = 8e-31
Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 29/137 (21%)
Query: 7 LVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVC 66
+ K ++ A++ GIG A+A LS EGA V I +R E E L++ GH+ VVC
Sbjct: 17 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE-------ELLKRSGHR---YVVC 66
Query: 67 HVANTDE-------------------RQKLFEHCSEVVWDKIFDVNLKSSFLLTQEVLPY 107
+ + + F+ + + + D + + + LP
Sbjct: 67 DLRKDLDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPA 126
Query: 108 MRKKKGGSIVYVSSIGG 124
M++K G IV ++S
Sbjct: 127 MKEKGWGRIVAITSFSV 143
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 110 bits (278), Expect = 8e-31
Identities = 29/149 (19%), Positives = 56/149 (37%), Gaps = 31/149 (20%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
L G++A++T + GIG IA+ L GA V I +R L G +
Sbjct: 26 SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGD--CQAIP 83
Query: 66 CHVANTDERQKLFEHC-------------------------SEVVWDKIFDVNLKSSFLL 100
+++ ++L + W+K+ +N+ S F
Sbjct: 84 ADLSSEAGARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSC 143
Query: 101 TQEVLPYMRK----KKGGSIVYVSSIGGF 125
Q++LP +R+ + ++ + S+ G
Sbjct: 144 IQQLLPLLRRSASAENPARVINIGSVAGI 172
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 110 bits (277), Expect = 9e-31
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 27/144 (18%)
Query: 7 LVGKVAVITASTEGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQNVSGVV 65
K A++T S+ G+G A A RL+ G ++VI+ +R + + E ++K G + V V
Sbjct: 2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVK-VLVVK 60
Query: 66 CHVANTDERQKLFEHC-------------------------SEVVWDKIFDVNLKSSFLL 100
+V + +++F+ E WD ++N K+
Sbjct: 61 ANVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFC 120
Query: 101 TQEVLPYMRKKKGGSIVYVSSIGG 124
QE M K GG IV +SS+G
Sbjct: 121 AQEAAKLMEKNGGGHIVSISSLGS 144
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 109 bits (276), Expect = 9e-31
Identities = 44/144 (30%), Positives = 61/144 (42%), Gaps = 24/144 (16%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEG-----HQN 60
RL GKVA+IT T GIG AIA + EGA V+I+ R KA +++ +
Sbjct: 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHD 62
Query: 61 VS---GVVCHVANTDER---------------QKLFEHCSEVVWDKIFDVNLKSSFLLTQ 102
S G T++ K E + W K+ VNL F T+
Sbjct: 63 SSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTR 122
Query: 103 EVLPYMRK-KKGGSIVYVSSIGGF 125
+ M+ G SI+ +SSI GF
Sbjct: 123 LGIQRMKNKGLGASIINMSSIEGF 146
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 109 bits (276), Expect = 1e-30
Identities = 33/148 (22%), Positives = 52/148 (35%), Gaps = 30/148 (20%)
Query: 5 TRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGV 64
RL GK A+IT S GIG A A+ EGA+V I+ +A + G V
Sbjct: 4 KRLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI---GPA-AYAV 59
Query: 65 VCHVANTDERQKLFEHC-------------------------SEVVWDKIFDVNLKSSFL 99
V D + ++K+F +N+ +
Sbjct: 60 QMDVTRQDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLF 119
Query: 100 LTQEVLPYMRKK-KGGSIVYVSSIGGFK 126
Q M + +GG I+ ++S G +
Sbjct: 120 TLQAAARQMIAQGRGGKIINMASQAGRR 147
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 109 bits (276), Expect = 1e-30
Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 31/147 (21%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
L KVA+IT + GIG ++ L+ GA VV++ E+++ A ++ G V
Sbjct: 8 ELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV---GRG-AVHHV 63
Query: 66 CHVAN---------------------------TDERQKLFEHCSEVVWDKIFDVNLKSSF 98
+ N +D L + VWD F VN + +
Sbjct: 64 VDLTNEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTM 123
Query: 99 LLTQEVLPYMRKKKGGSIVYVSSIGGF 125
L+ + +P + GG+IV +SS
Sbjct: 124 LMCKYAIPRLISAGGGAIVNISSATAH 150
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 109 bits (276), Expect = 2e-30
Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 26/144 (18%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
L G+ AV+T + GIG AIA + GA V+ R + V + + + G VV
Sbjct: 28 SLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDG-VKEVADEIADGGGS-AEAVV 85
Query: 66 CHVANTDERQKLFEHCSEV------------------------VWDKIFDVNLKSSFLLT 101
+A+ + + E + W ++ VNL ++++L+
Sbjct: 86 ADLADLEGAANVAEELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLS 145
Query: 102 QEVLPYMRKKKGGSIVYVSSIGGF 125
+ M G IV ++S+ F
Sbjct: 146 RSFGTAMLAHGSGRIVTIASMLSF 169
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 109 bits (274), Expect = 2e-30
Identities = 22/147 (14%), Positives = 47/147 (31%), Gaps = 25/147 (17%)
Query: 4 ATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSG 63
+ + + + IG IAK+ +AEG +V R + V ++ G + +
Sbjct: 2 SLTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGR-IVA 60
Query: 64 VVCHVANTDERQKLFEHC------------------------SEVVWDKIFDVNLKSSFL 99
N DE ++ V+ K++++ + F+
Sbjct: 61 RSLDARNEDEVTAFLNAADAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFV 120
Query: 100 LTQEVLPYMRKKKGGSIVYVSSIGGFK 126
+E M G I + + +
Sbjct: 121 SGRESARLMLAHGQGKIFFTGATASLR 147
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 109 bits (275), Expect = 2e-30
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 28/147 (19%)
Query: 5 TRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGV 64
+VA++T +T GIG IA+RL EG V + +R E + ++ L++ G + G
Sbjct: 18 ATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVE-ADGR 76
Query: 65 VCHVANTDERQKLFEHCSE-------VV------------------WDKIFDVNLKSSFL 99
C V + E + L E +V W + + NL F
Sbjct: 77 TCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFR 136
Query: 100 LTQEVLPY--MRKKKGGSIVYVSSIGG 124
+T++VL M ++ G IV ++S GG
Sbjct: 137 VTKQVLKAGGMLERGTGRIVNIASTGG 163
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 109 bits (274), Expect = 2e-30
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 26/145 (17%)
Query: 7 LVGKVAVITASTEGIGFAIAKRLSAEGASVVISS-RKESNVNKAVETLQKEGHQNVSGVV 65
L GKVAV+T ST GIG IA L+A+GA +V++ + + K L + V
Sbjct: 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDG 61
Query: 66 CHVANTDERQKLFEHCSEVV-------------------------WDKIFDVNLKSSFLL 100
++ + + L ++ + WD I +NL + F
Sbjct: 62 ADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHG 121
Query: 101 TQEVLPYMRKKKGGSIVYVSSIGGF 125
T LP+M+K+ G I+ ++S G
Sbjct: 122 TAAALPHMKKQGFGRIINIASAHGL 146
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 109 bits (274), Expect = 2e-30
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 30/151 (19%)
Query: 1 MFKATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRK-ESNVNKAVETLQKEGHQ 59
M+K L GKV VIT S+ G+G ++A R + E A VV++ R E N +E ++K G +
Sbjct: 1 MYK--DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGE 58
Query: 60 NVSGVVCHVANTDERQKLFEHC-------------------------SEVVWDKIFDVNL 94
V V + L + S W+K+ D NL
Sbjct: 59 -AIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNL 117
Query: 95 KSSFLLTQEVLPYMRKKK-GGSIVYVSSIGG 124
+FL ++E + Y + G+++ +SS+
Sbjct: 118 TGAFLGSREAIKYFVENDIKGTVINMSSVHE 148
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 108 bits (273), Expect = 3e-30
Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 34/150 (22%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
L GKVA+IT + G G +AKR + GA VVI R ++ + + G V
Sbjct: 6 SLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI---GD-AALAVA 61
Query: 66 CHVANTDE--------------------------RQKLFEHCSEVVWDKIFDVNLKSSFL 99
++ + + + E +D+I VN++ +L
Sbjct: 62 ADISKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYL 121
Query: 100 LTQEVLPYMRKKKGGS----IVYVSSIGGF 125
+T +++P+ ++ I+ V+S G
Sbjct: 122 MTSKLIPHFKENGAKGQECVILNVASTGAG 151
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 109 bits (274), Expect = 4e-30
Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 28/148 (18%)
Query: 4 ATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSG 63
+ + A +T + GIG A+A+ L+A G +V +R NV+ AV+ L+ GH V G
Sbjct: 19 SHMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHD-VDG 77
Query: 64 VVCHVANTDERQKLFEHC-------------------------SEVVWDKIFDVNLKSSF 98
C V +TDE + +W + D NL F
Sbjct: 78 SSCDVTSTDEVHAAVAAAVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVF 137
Query: 99 LLTQEVLPY--MRKKKGGSIVYVSSIGG 124
+T+EVL MR+ G IV ++S GG
Sbjct: 138 RVTREVLRAGGMREAGWGRIVNIASTGG 165
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 107 bits (271), Expect = 6e-30
Identities = 38/144 (26%), Positives = 56/144 (38%), Gaps = 31/144 (21%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
RL K +IT + GIG A + + EGA +V +E + +A E + VV
Sbjct: 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVG------AHPVV 55
Query: 66 CHVANTDERQKLFEHCSE-------VV------------------WDKIFDVNLKSSFLL 100
VA+ ++ F VV W+ + VNL SFL+
Sbjct: 56 MDVADPASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLV 115
Query: 101 TQEVLPYMRKKKGGSIVYVSSIGG 124
+ MR+K GSIV +S
Sbjct: 116 AKAASEAMREKNPGSIVLTASRVY 139
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 107 bits (271), Expect = 6e-30
Identities = 33/145 (22%), Positives = 51/145 (35%), Gaps = 29/145 (20%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
L GK +IT G+G A++ A GA VV++ + L G
Sbjct: 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL---GDA-ARYQH 57
Query: 66 CHVANTDE-------------------------RQKLFEHCSEVVWDKIFDVNLKSSFLL 100
V ++ E S + K+ ++NL F+
Sbjct: 58 LDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIG 117
Query: 101 TQEVLPYMRKKKGGSIVYVSSIGGF 125
+ V+P M+ GGSIV +SS G
Sbjct: 118 MKTVIPAMKDAGGGSIVNISSAAGL 142
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 107 bits (271), Expect = 6e-30
Identities = 33/146 (22%), Positives = 52/146 (35%), Gaps = 32/146 (21%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
GK ++T GIG AIA+ + EGA V + + + E + G
Sbjct: 3 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP----EGKEVAEAIGGA---FFQ 55
Query: 66 CHVANTDERQKLFEHC-------------------------SEVVWDKIFDVNLKSSFLL 100
+ + ER + E W ++ +VNL + L
Sbjct: 56 VDLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHL 115
Query: 101 TQEVLPYMRKKKGGSIVYVSSIGGFK 126
+ MRK GG+IV V+S+ G
Sbjct: 116 SALAAREMRKVGGGAIVNVASVQGLF 141
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 107 bits (270), Expect = 9e-30
Identities = 28/150 (18%), Positives = 49/150 (32%), Gaps = 38/150 (25%)
Query: 1 MFKATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQN 60
M R KV VIT +++GIG + + VV +SR + +
Sbjct: 23 MM---RNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSI----------KPSADPD 69
Query: 61 VSGVVCHVANTDE-------------------------RQKLFEHCSEVVWDKIFDVNLK 95
+ V ++ + K F ++ +D VN+
Sbjct: 70 IHTVAGDISKPETADRIVREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVA 129
Query: 96 SSFLLTQEVLPYMRKKKGGSIVYVSSIGGF 125
F +TQ M K+ G IV +++
Sbjct: 130 GFFHITQRAAAEMLKQGSGHIVSITTSLVD 159
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 107 bits (270), Expect = 9e-30
Identities = 25/142 (17%), Positives = 46/142 (32%), Gaps = 21/142 (14%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
L K + A+ GIG ++ L + + N E N++
Sbjct: 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHT 61
Query: 66 CHV-ANTDERQKLFEHCSE-------VV----------WDKIFDVNLKSSFLLTQEVLPY 107
V E +KL + + ++ ++ +N T +L +
Sbjct: 62 YDVTVPVAESKKLLKKIFDQLKTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDF 121
Query: 108 MRKKKGGS---IVYVSSIGGFK 126
K+KGG I + S+ GF
Sbjct: 122 WDKRKGGPGGIIANICSVTGFN 143
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 107 bits (270), Expect = 1e-29
Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 27/144 (18%)
Query: 8 VGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVCH 67
+ KVA++T + +GIG AIA RL +G +V I+ ++ + + G V
Sbjct: 1 MKKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGH-AVAVKVD 59
Query: 68 VANTDE-------------------------RQKLFEHCSEVVWDKIFDVNLKSSFLLTQ 102
V++ D+ E + + DK++++N+K Q
Sbjct: 60 VSDRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQ 119
Query: 103 EVLPYMRK-KKGGSIVYVSSIGGF 125
+ +K GG I+ S G
Sbjct: 120 AAVEAFKKEGHGGKIINACSQAGH 143
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 107 bits (269), Expect = 2e-29
Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 27/146 (18%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
L GK A+IT ++ GIG +A + GA V +++R + + + G + +
Sbjct: 29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGK-ALPIR 87
Query: 66 CHVANTDERQKLFEHC-------------------------SEVVWDKIFDVNLKSSFLL 100
C V D+ + + + + +I D N+ FL
Sbjct: 88 CDVTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLT 147
Query: 101 TQEVLPYMRK-KKGGSIVYVSSIGGF 125
Q M GG+I+ +S+ G
Sbjct: 148 AQAAARAMVDQGLGGTIITTASMSGH 173
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 105 bits (265), Expect = 4e-29
Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 38/164 (23%)
Query: 4 ATRLVGKVAVITASTEGIGFAIAKRLS---AEGASVVISSRKESNVNKAVETLQKEGHQ- 59
A L V V+T ++ G G A+A +L+ + G+ +++S+R ES + + E L +
Sbjct: 1 ADGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDL 60
Query: 60 NVSGVVCHVANTDERQKLFEHCSEVV--------------------------------WD 87
V + Q+L E+ +
Sbjct: 61 KVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVN 120
Query: 88 KIFDVNLKSSFLLTQEVLPYMRKKKG--GSIVYVSSIGGFKQFK 129
+ +NL S LT L + G ++V +SS+ + +K
Sbjct: 121 NYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYK 164
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 105 bits (265), Expect = 5e-29
Identities = 32/157 (20%), Positives = 65/157 (41%), Gaps = 35/157 (22%)
Query: 1 MFKATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRK-ESNVNKAVETLQKEGHQ 59
MF L GK +IT S++GIG A A+ + GA V + RK +N+++ + +++ +G
Sbjct: 1 MFP--DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGD 58
Query: 60 NVSGVVCHVANTDE--------------------------RQKLFEHCSEVVWDKIFDVN 93
+ +A ++ +K + +D + D N
Sbjct: 59 -AAFFAADLATSEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDAN 117
Query: 94 LKSSFLLTQEVLPYMRKK-----KGGSIVYVSSIGGF 125
++S + T+ LP++ + +++ SI G
Sbjct: 118 IRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGH 154
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 105 bits (265), Expect = 6e-29
Identities = 36/141 (25%), Positives = 54/141 (38%), Gaps = 21/141 (14%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEG---HQNVS 62
RL GKVA+++ G+G + + + AEGA VV + L H +V+
Sbjct: 4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVT 63
Query: 63 ---GVVCHVANTDER---------------QKLFEHCSEVVWDKIFDVNLKSSFLLTQEV 104
V E + W +I DVNL FL + V
Sbjct: 64 QPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAV 123
Query: 105 LPYMRKKKGGSIVYVSSIGGF 125
+ M++ GSI+ +SSI G
Sbjct: 124 VKPMKEAGRGSIINISSIEGL 144
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 105 bits (265), Expect = 7e-29
Identities = 32/148 (21%), Positives = 56/148 (37%), Gaps = 32/148 (21%)
Query: 5 TRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGV 64
++ K+A++T + G+G A+A L+ G V ++ R+ + + E + V
Sbjct: 24 SKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAA----EIGDDALCV 79
Query: 65 VCHVANTDERQKLFEHC--------------------------SEVVWDKIFDVNLKSSF 98
V + D + LF + W ++ D NL F
Sbjct: 80 PTDVTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPF 139
Query: 99 LLTQEVLPYMRKKK--GGSIVYVSSIGG 124
L TQE M+ ++ GG I+ SI
Sbjct: 140 LCTQEAFRVMKAQEPRGGRIINNGSISA 167
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 105 bits (264), Expect = 7e-29
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 34/149 (22%)
Query: 1 MFKATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQN 60
M RL GK ++T + GIG A + EGAS+V R+E + +AV L+ E
Sbjct: 1 MG---RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAI-- 55
Query: 61 VSGVVCHVANTDERQKLFEHC-------------------------SEVVWDKIFDVNLK 95
VV V++ + +F W+K+ VNL
Sbjct: 56 --AVVADVSDPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLT 113
Query: 96 SSFLLTQEVLPYMRKKKGGSIVYVSSIGG 124
SFL+ ++ + +GGS+V S+ G
Sbjct: 114 GSFLVARKAGEVLE--EGGSLVLTGSVAG 140
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 105 bits (263), Expect = 8e-29
Identities = 30/145 (20%), Positives = 52/145 (35%), Gaps = 29/145 (20%)
Query: 8 VGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVCH 67
+GKV ++T + GIG +I L + V+ S ++ L+++ VV
Sbjct: 1 MGKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSE--APLKKLKEKYGDRFFYVVGD 58
Query: 68 VANTDERQKLFEHC--------------------------SEVVWDKIFDVNLKSSFLLT 101
+ ++L W K++D+N S L
Sbjct: 59 ITEDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLV 118
Query: 102 QEVLPYMRKKKGGSIVYVSSIGGFK 126
LP + KK G++V+VSS
Sbjct: 119 GIALPEL-KKTNGNVVFVSSDACNM 142
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 104 bits (263), Expect = 9e-29
Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 29/150 (19%)
Query: 1 MFKATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQN 60
M + L GKVA++T ++ GIG AIA+ L+ GA V+ ++ ES + L G
Sbjct: 1 MSQFMNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGK-- 58
Query: 61 VSGVVCHVANTDERQKLFEHCSE-------VV------------------WDKIFDVNLK 95
G+ +V N + + + + ++ +V W I + NL
Sbjct: 59 --GMALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLT 116
Query: 96 SSFLLTQEVLPYMRKKKGGSIVYVSSIGGF 125
S F L++ VL M KK+ G I+ V S+ G
Sbjct: 117 SIFRLSKAVLRGMMKKRQGRIINVGSVVGT 146
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 104 bits (262), Expect = 1e-28
Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 25/143 (17%)
Query: 7 LVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVC 66
L GKV+++T ST GIG AIA++L++ G++V+I+ E + + GV
Sbjct: 5 LQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEM 64
Query: 67 HVANTDERQKLFEHCSEVV-------------------------WDKIFDVNLKSSFLLT 101
++ + + K FE +V W+++ VNL +FL+T
Sbjct: 65 NLLSEESINKAFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVT 124
Query: 102 QEVLPYMRKKKGGSIVYVSSIGG 124
Q L M K++ G IV +SS+ G
Sbjct: 125 QNSLRKMIKQRWGRIVNISSVVG 147
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 104 bits (262), Expect = 1e-28
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 30/146 (20%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
RL GK A++T + +GIG AIA RL+A+GA+V++S A ++ K+ +
Sbjct: 3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKAR----AIA 58
Query: 66 CHVANTDERQKLFEHC-------------------------SEVVWDKIFDVNLKSSFLL 100
+++ + LF W KI DVNL +F++
Sbjct: 59 ADISDPGSVKALFAEIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIV 118
Query: 101 TQEVLPYMRKK-KGGSIVYVSSIGGF 125
T+ MR K G ++ ++S F
Sbjct: 119 TRAGTDQMRAAGKAGRVISIASNTFF 144
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 105 bits (264), Expect = 1e-28
Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 29/149 (19%)
Query: 1 MFKATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQN 60
+ KVA++T + GIG IAK L+ + V+ SR + + + V+ ++ G++
Sbjct: 39 YYC---GENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYE- 94
Query: 61 VSGVVCHVANTDERQKLFEHCSE-------VV------------------WDKIFDVNLK 95
SG V+ +E ++ +V W+ + NL
Sbjct: 95 SSGYAGDVSKKEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLN 154
Query: 96 SSFLLTQEVLPYMRKKKGGSIVYVSSIGG 124
S F +TQ + M + G I+ +SSI G
Sbjct: 155 SLFYITQPISKRMINNRYGRIINISSIVG 183
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 104 bits (262), Expect = 2e-28
Identities = 26/147 (17%), Positives = 56/147 (38%), Gaps = 29/147 (19%)
Query: 8 VGKVAVITASTEGIGFAIAKRLSAEGASVVIS--SRKESNVNKAVETLQKEGHQNVSGVV 65
+ KVA++T +GIG I+++L+A+G + ++ ++E + ++ ++ + V
Sbjct: 1 MSKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQK-AVFVG 59
Query: 66 CHVANTDE-------------------------RQKLFEHCSEVVWDKIFDVNLKSSFLL 100
V + + K +E +I+ VN+ S F
Sbjct: 60 LDVTDKANFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFG 119
Query: 101 TQEVLPYMRK-KKGGSIVYVSSIGGFK 126
Q + G I+ +SI +
Sbjct: 120 IQAASRKFDELGVKGKIINAASIAAIQ 146
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 104 bits (261), Expect = 2e-28
Identities = 27/147 (18%), Positives = 59/147 (40%), Gaps = 26/147 (17%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEG--HQNVSG 63
+A+IT +++GIG IA L+ +G VV+ +R + N+ K + + + Q
Sbjct: 4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIV 63
Query: 64 VVCHVANTDERQKLFEHCSE-------VV-----------------WDKIFDVNLKSSFL 99
+ + + + + + +V + KI ++N+ + +
Sbjct: 64 LPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYG 123
Query: 100 LTQEVLPYMRKKKGGSIVYVSSIGGFK 126
+ + V M+ +K G I V+S
Sbjct: 124 ILKTVTEIMKVQKNGYIFNVASRAAKY 150
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 104 bits (261), Expect = 2e-28
Identities = 34/143 (23%), Positives = 69/143 (48%), Gaps = 26/143 (18%)
Query: 7 LVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVC 66
L KVA++T ++ GIGF +A L+++GA+VV ++ +++ K +++++G G+V
Sbjct: 3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG-FKARGLVL 61
Query: 67 HVANTDERQKLFEHCSEVV-------------------------WDKIFDVNLKSSFLLT 101
++++ + Q F W + + NL S F ++
Sbjct: 62 NISDIESIQNFFAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMS 121
Query: 102 QEVLPYMRKKKGGSIVYVSSIGG 124
+E + M KK+ G I+ + S+ G
Sbjct: 122 KECVRGMMKKRWGRIISIGSVVG 144
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 104 bits (262), Expect = 2e-28
Identities = 36/147 (24%), Positives = 56/147 (38%), Gaps = 29/147 (19%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
RL KVA+IT GIG AK GA VVI+ + + K + +S V
Sbjct: 13 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDV--ISFVH 70
Query: 66 CHVANTDERQKLFEHC---------------------------SEVVWDKIFDVNLKSSF 98
C V ++ + L + + ++ D+N+ +F
Sbjct: 71 CDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAF 130
Query: 99 LLTQEVLPYMRKKKGGSIVYVSSIGGF 125
L+ + M K GSIV+ +SI F
Sbjct: 131 LVAKHAARVMIPAKKGSIVFTASISSF 157
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 104 bits (261), Expect = 2e-28
Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 26/143 (18%)
Query: 7 LVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVC 66
L +VA++T ++ GIG AIA L+ GA V+ ++ E+ ++ G + G V
Sbjct: 26 LDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLE-GRGAVL 84
Query: 67 HVANTDERQKLFEHCSE-------VV------------------WDKIFDVNLKSSFLLT 101
+V + L E + +V WD + D NLK+ F L+
Sbjct: 85 NVNDATAVDALVESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLS 144
Query: 102 QEVLPYMRKKKGGSIVYVSSIGG 124
+ VL M K +GG IV ++S+ G
Sbjct: 145 RAVLRPMMKARGGRIVNITSVVG 167
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 103 bits (260), Expect = 3e-28
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 22/141 (15%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEG---HQNVS 62
RL GKVA++T G+G + K L EGA V S E+ + L + +VS
Sbjct: 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVS 62
Query: 63 ---GVVCHVANTDER---------------QKLFEHCSEVVWDKIFDVNLKSSFLLTQEV 104
+A R E + ++ +N +S F+ Q+
Sbjct: 63 SEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQG 122
Query: 105 LPYMRKKKGGSIVYVSSIGGF 125
+ M+ + GGSI+ ++S+ +
Sbjct: 123 IAAMK-ETGGSIINMASVSSW 142
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 103 bits (260), Expect = 3e-28
Identities = 24/142 (16%), Positives = 41/142 (28%), Gaps = 33/142 (23%)
Query: 10 KVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVCHVA 69
A++T G A RLS G +V K + L+ +
Sbjct: 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESF----KQKDELEAFA---ETYPQLKPM 54
Query: 70 NTDERQKLFEHCSEVV--------------------------WDKIFDVNLKSSFLLTQE 103
+ E +L E + + + F L
Sbjct: 55 SEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNA 114
Query: 104 VLPYMRKKKGGSIVYVSSIGGF 125
V M+K+K G I++++S F
Sbjct: 115 VASQMKKRKSGHIIFITSATPF 136
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 103 bits (260), Expect = 4e-28
Identities = 41/152 (26%), Positives = 61/152 (40%), Gaps = 33/152 (21%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQ------ 59
RL +A++T + GIG A++ RL+ EGA+V + + V L G +
Sbjct: 4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRG 63
Query: 60 NVSGVVCHVANTDERQKLFEHCSE--------VV------------------WDKIFDVN 93
N + V+ + L E VV WDK+ VN
Sbjct: 64 NHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVN 123
Query: 94 LKSSFLLTQEVLPYMRKKK-GGSIVYVSSIGG 124
LK +FL+TQ + GSI+ +SSI G
Sbjct: 124 LKGTFLVTQAAAQALVSNGCRGSIINISSIVG 155
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 103 bits (260), Expect = 4e-28
Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 33/151 (21%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKES-------NVNKAVETLQKEGH 58
L GK IT ++ GIG AIA R + +GA+V I+++ ++ A + G
Sbjct: 3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGG 62
Query: 59 QNVSGVVCHVANTDERQKLFEHCSE-------VV------------------WDKIFDVN 93
Q + + C + D+ + + +V +D + VN
Sbjct: 63 QGL-ALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVN 121
Query: 94 LKSSFLLTQEVLPYMRKKKGGSIVYVSSIGG 124
+ SF+ Q LP++ + I+ ++
Sbjct: 122 ARGSFVCAQACLPHLLQAPNPHILTLAPPPS 152
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 102 bits (257), Expect = 5e-28
Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 21/137 (15%)
Query: 10 KVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGH------QNVSG 63
+A++T + G A + L+ +G +VV ++ + + Q
Sbjct: 2 VIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENPGTIALAEQKPER 61
Query: 64 VVCHVANT---------------DERQKLFEHCSEVVWDKIFDVNLKSSFLLTQEVLPYM 108
+V + E SE ++F+ LL Q + +
Sbjct: 62 LVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPL 121
Query: 109 RKKKGGSIVYVSSIGGF 125
R G S+++++S G
Sbjct: 122 RAAGGASVIFITSSVGK 138
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 103 bits (258), Expect = 5e-28
Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 30/145 (20%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
L +IT +++ +G A RL G V+IS R E +V L++ G +
Sbjct: 24 TLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEH---ASVTELRQAG---AVALY 77
Query: 66 CHVANTDERQKLFEHCSE-------VV-----------------WDKIFDVNLKSSFLLT 101
+ + VV + ++F V++ + +L+
Sbjct: 78 GDFSCETGIMAFIDLLKTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLIN 137
Query: 102 QEVLPYMRKKKGGSIVYVSSIGGFK 126
P + + IV++S K
Sbjct: 138 LHCEPLLTASEVADIVHISDDVTRK 162
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 102 bits (257), Expect = 7e-28
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 28/146 (19%)
Query: 1 MFKATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQN 60
M L GK ++IT ++ GIG AIA+ L G+ V+IS E + L+
Sbjct: 9 MID---LTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYT-- 63
Query: 61 VSGVVCHVANTDERQKLFEHCSEV---V------------------WDKIFDVNLKSSFL 99
VC++AN +E L S + V +DK+ D+NLK++F+
Sbjct: 64 --IEVCNLANKEECSNLISKTSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFI 121
Query: 100 LTQEVLPYMRKKKGGSIVYVSSIGGF 125
L +E + M +K+ G I+ +SSI G
Sbjct: 122 LNREAIKKMIQKRYGRIINISSIVGI 147
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 102 bits (257), Expect = 7e-28
Identities = 30/144 (20%), Positives = 52/144 (36%), Gaps = 36/144 (25%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
GK +T + +GIG+A A GA V + + + + V
Sbjct: 4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFT-----------QEQYPFATEV 52
Query: 66 CHVANTDE-------------------------RQKLFEHCSEVVWDKIFDVNLKSSFLL 100
VA+ + R + S+ W + F VN+ +F L
Sbjct: 53 MDVADAAQVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNL 112
Query: 101 TQEVLPYMRKKKGGSIVYVSSIGG 124
Q+ + R+++GG+IV V+S
Sbjct: 113 FQQTMNQFRRQRGGAIVTVASDAA 136
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 102 bits (257), Expect = 7e-28
Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 27/145 (18%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQNVSGV 64
+L GK A++T S+ G+G AIA +L GA++V++ S ++++ E + G V
Sbjct: 2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGIN-VVVA 60
Query: 65 VCHVANTDERQKLFEHCSE-------VV------------------WDKIFDVNLKSSFL 99
V N ++ + + + + +V WD + + NLKS++L
Sbjct: 61 KGDVKNPEDVENMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYL 120
Query: 100 LTQEVLPYMRKKKGGSIVYVSSIGG 124
T+ V M K+K G I+ ++SI G
Sbjct: 121 CTKAVSKIMLKQKSGKIINITSIAG 145
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 101 bits (255), Expect = 8e-28
Identities = 21/145 (14%), Positives = 49/145 (33%), Gaps = 30/145 (20%)
Query: 7 LVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVC 66
+ ++T + G+G A+ L G V + R+ ++ + V G+V
Sbjct: 1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQ----RLQQQELLLGNAVIGIVA 56
Query: 67 HVANTDERQKL-------------------------FEHCSEVVWDKIFDVNLKSSFLLT 101
+A+ ++ + ++ + NL S+ L+
Sbjct: 57 DLAHHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVA 116
Query: 102 QEVLPYMRKKKGGSIVYVSSIGGFK 126
Q+ + + ++GG + V S
Sbjct: 117 QQTVRLIG-ERGGVLANVLSSAAQV 140
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 104 bits (260), Expect = 1e-27
Identities = 31/156 (19%), Positives = 63/156 (40%), Gaps = 33/156 (21%)
Query: 1 MFKATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESN-------VNKAVETL 53
+ RL G IT ++ GIG AIA + + +GA++VI+++ + A E +
Sbjct: 37 LPNTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEI 96
Query: 54 QKEGHQNVSGVVCHVANTDERQKLFEHCSE-------VV------------------WDK 88
+ G + + V + + E + +V D
Sbjct: 97 EAVGGK-ALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDL 155
Query: 89 IFDVNLKSSFLLTQEVLPYMRKKKGGSIVYVSSIGG 124
+ +VN + ++L ++ +PY++K K I+ +S
Sbjct: 156 MMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLN 191
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 102 bits (257), Expect = 1e-27
Identities = 29/153 (18%), Positives = 62/153 (40%), Gaps = 33/153 (21%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESN-------VNKAVETLQKEGH 58
L GK I+ + GIG AIAKR++A+GA+V + ++ + A + +++ G
Sbjct: 6 SLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGG 65
Query: 59 QNVSGVVCHVANTDERQKLFEHCSE-------VV------------------WDKIFDVN 93
Q +V + + D E V +D + +
Sbjct: 66 Q-ALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQ 124
Query: 94 LKSSFLLTQEVLPYMRKKKGGSIVYVSSIGGFK 126
++ ++ ++Q +P+M+ + I+ +S +
Sbjct: 125 VRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLE 157
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 101 bits (255), Expect = 2e-27
Identities = 29/143 (20%), Positives = 60/143 (41%), Gaps = 27/143 (18%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
+ A+ITA T+G+G + ++L A+G SV ++ ++ + ++ K+ + + V
Sbjct: 4 GRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQ 63
Query: 66 CHVANTDERQKLFEHCSE-------VV--------------------WDKIFDVNLKSSF 98
V ++ K+ E ++ W+++ NL + F
Sbjct: 64 ADVTKKEDLHKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVF 123
Query: 99 LLTQEVLPYMRKKKGGSIVYVSS 121
L + V+P MRK+ G I+
Sbjct: 124 HLLKLVVPVMRKQNFGRIINYGF 146
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 101 bits (255), Expect = 2e-27
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 32/150 (21%)
Query: 1 MFKATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQN 60
MFK L G+ A++T +T GIG AIA+ A+GA V + +E + + L K+
Sbjct: 22 MFK---LTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVF-- 76
Query: 61 VSGVVCHVANTDERQKLFEHCSEVV-------------------------WDKIFDVNLK 95
++++ ++L E + WD + VNL
Sbjct: 77 --VFSANLSDRKSIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLT 134
Query: 96 SSFLLTQEVLPYMRKKKGGSIVYVSSIGGF 125
++ LT+E++ M +++ G I+ ++SI G
Sbjct: 135 AASTLTRELIHSMMRRRYGRIINITSIVGV 164
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 101 bits (253), Expect = 3e-27
Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 27/144 (18%)
Query: 7 LVGKVAVITASTEGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQNVSGVV 65
L GKVA++T ++ GIG AIA L+ +GA+VV++ + E N+ V+ ++K G V
Sbjct: 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSD-AIAVR 60
Query: 66 CHVANTDERQKLFEHCSE-------VV------------------WDKIFDVNLKSSFLL 100
VAN ++ + + + +V WD + + NLK FL
Sbjct: 61 ADVANAEDVTNMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLC 120
Query: 101 TQEVLPYMRKKKGGSIVYVSSIGG 124
T+ V +M +++ G IV ++S+ G
Sbjct: 121 TKAVSRFMMRQRHGRIVNIASVVG 144
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 100 bits (252), Expect = 4e-27
Identities = 17/141 (12%), Positives = 38/141 (26%), Gaps = 19/141 (13%)
Query: 1 MFKATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSR---------------KESN 45
+ + K ++ + +G + K ++ + + E
Sbjct: 14 LVPRGSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSFTIKDSGEEE 73
Query: 46 VNKAVETLQKEGHQNVSGVVCHVANTDERQKLFEHCSEVVWDKIFDVNLKSSFLLTQEVL 105
+ +E + + V VC A + D+NL S+F
Sbjct: 74 IKSVIEKINSK-SIKVDTFVC-AAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGA 131
Query: 106 PYMRKKKGGSIVYVSSIGGFK 126
+ +GG V +
Sbjct: 132 KLLN--QGGLFVLTGASAALN 150
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 100 bits (252), Expect = 4e-27
Identities = 31/148 (20%), Positives = 60/148 (40%), Gaps = 28/148 (18%)
Query: 6 RLVGKVAVIT--ASTEGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQNVS 62
L GKV V+T + +G+G A+ + GA+V I+ + + + V+ L+K
Sbjct: 17 SLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAK 76
Query: 63 GVVCHVANTDERQKLFEHC-------------------------SEVVWDKIFDVNLKSS 97
C V + + +KL + S W+ + V+L +
Sbjct: 77 AYKCQVDSYESCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGT 136
Query: 98 FLLTQEVLPYMRKKKGGSIVYVSSIGGF 125
F + V + +++ GS+V +S+ G
Sbjct: 137 FHCAKAVGHHFKERGTGSLVITASMSGH 164
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 100 bits (252), Expect = 5e-27
Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 26/146 (17%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
V K ++T GIG A + ++A GA+V + R ++ + E + KE
Sbjct: 11 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQ 70
Query: 66 CHVANTDERQKLFEHC-------------------------SEVVWDKIFDVNLKSSFLL 100
C V+NTD K + + + ++DVN+ F
Sbjct: 71 CDVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNT 130
Query: 101 TQEVLPYM-RKKKGGSIVYVSSIGGF 125
+ V +K++ GSIV SS+
Sbjct: 131 CRAVAKLWLQKQQKGSIVVTSSMSSQ 156
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 100 bits (251), Expect = 6e-27
Identities = 35/144 (24%), Positives = 67/144 (46%), Gaps = 27/144 (18%)
Query: 7 LVGKVAVITASTEGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQNVSGVV 65
+ K A++T ++ GIG +IA +L+ EG +V ++ + + VE ++ +G +
Sbjct: 2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVD-SFAIQ 60
Query: 66 CHVANTDERQKLFEHCSE-------VV------------------WDKIFDVNLKSSFLL 100
+VA+ DE + + + +V WD + D NLK F
Sbjct: 61 ANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNC 120
Query: 101 TQEVLPYMRKKKGGSIVYVSSIGG 124
Q+ P M +++ G+I+ +SS+ G
Sbjct: 121 IQKATPQMLRQRSGAIINLSSVVG 144
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 100 bits (251), Expect = 6e-27
Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 27/144 (18%)
Query: 7 LVGKVAVITASTEGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQNVSGVV 65
L ++A++T ++ GIG AIA L+A GA V ++ + ++ V + G + V
Sbjct: 26 LTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGE-AFAVK 84
Query: 66 CHVANTDERQKLFEHCSE-------VV------------------WDKIFDVNLKSSFLL 100
V+ E + LF E +V W + D+NL FL
Sbjct: 85 ADVSQESEVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLC 144
Query: 101 TQEVLPYMRKKKGGSIVYVSSIGG 124
++ M K++ G I+ ++S+ G
Sbjct: 145 SRAAAKIMLKQRSGRIINIASVVG 168
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 99 bits (250), Expect = 9e-27
Identities = 28/152 (18%), Positives = 57/152 (37%), Gaps = 31/152 (20%)
Query: 1 MFKATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVI---SSRKESNVNKAVETLQKEG 57
+ K L KV VI + +G AK + E ++V+ ++ NK + L+ +G
Sbjct: 3 LTKYHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQG 62
Query: 58 HQNVSGVVCHVANTDERQKLFEHC-------------------------SEVVWDKIFDV 92
+ ++N +E KLF+ SE +D + +
Sbjct: 63 AKVAL-YQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTI 121
Query: 93 NLKSSFLLTQEVLPYMRKKKGGSIVYVSSIGG 124
N K ++ ++ +M G I+ +++
Sbjct: 122 NNKVAYFFIKQAAKHMN--PNGHIITIATSLL 151
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 99 bits (250), Expect = 1e-26
Identities = 26/145 (17%), Positives = 58/145 (40%), Gaps = 25/145 (17%)
Query: 7 LVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVC 66
+VA +T G+G AI++RL G +V +S + ++ +++ ++
Sbjct: 23 QAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAV 82
Query: 67 HVANTDERQKLFEHCSEVV-------------------------WDKIFDVNLKSSFLLT 101
VA+ + ++ E WD + +L + F +T
Sbjct: 83 DVADFESCERCAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVT 142
Query: 102 QEVLPYMRKKKGGSIVYVSSIGGFK 126
++ + M +++ G IV + S+ G +
Sbjct: 143 KQFIAGMVERRFGRIVNIGSVNGSR 167
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 99.1 bits (248), Expect = 1e-26
Identities = 26/141 (18%), Positives = 42/141 (29%), Gaps = 31/141 (21%)
Query: 10 KVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVCHVA 69
+ ++T GIG I G V E K KE N+ VA
Sbjct: 3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDE----KRSADFAKERP-NLFYFHGDVA 57
Query: 70 NTDE-------------------------RQKLFEHCSEVVWDKIFDVNLKSSFLLTQEV 104
+ + + +D I V LK+ + L++
Sbjct: 58 DPLTLKKFVEYAMEKLQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLC 117
Query: 105 LPYMRKKKGGSIVYVSSIGGF 125
+ K K G I+ ++S F
Sbjct: 118 RDELIKNK-GRIINIASTRAF 137
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 99.5 bits (249), Expect = 1e-26
Identities = 39/147 (26%), Positives = 57/147 (38%), Gaps = 30/147 (20%)
Query: 5 TRLVGKVAVITASTEGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQNVSG 63
R + V+ + IG A A R + EGA+VV++ + AV ++K G +
Sbjct: 4 QRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSAL-A 62
Query: 64 VVCHVANTDE--------------------------RQKLFEHCSEVVWDKIFDVNLKSS 97
+ + N E +K E W ++ DVNL S
Sbjct: 63 IKADLTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSL 122
Query: 98 FLLTQEVLPYMRKKKGGSIVYVSSIGG 124
FL + LP M KGG+IV SS G
Sbjct: 123 FLTAKTALPKMA--KGGAIVTFSSQAG 147
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 99.1 bits (248), Expect = 1e-26
Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 26/141 (18%)
Query: 10 KVAVITASTEGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQNVSGVVCHV 68
+ A+IT ++ GIG AIA RL+ +G ++ I + + E ++ G V+ + ++
Sbjct: 2 RKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANL 61
Query: 69 ANTDERQKLFEHCSEVV-------------------------WDKIFDVNLKSSFLLTQE 103
+ L +EV+ W+ + + NL + F T+E
Sbjct: 62 LEAEAATALVHQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTRE 121
Query: 104 VLPYMRKKKGGSIVYVSSIGG 124
+ M K + G IV ++S+ G
Sbjct: 122 AVKLMMKARFGRIVNITSVVG 142
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 100 bits (250), Expect = 1e-26
Identities = 38/149 (25%), Positives = 60/149 (40%), Gaps = 28/149 (18%)
Query: 2 FKATRLVGKVAVIT-ASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQN 60
F+ L GK ++T AS GIG +A L+ GA VV+++R + + K V + G +
Sbjct: 21 FRPEMLQGKKVIVTGASK-GIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAAS 79
Query: 61 VSGVVCHVANTDERQKL-------------------------FEHCSEVVWDKIFDVNLK 95
+ + + ++ H K +VN
Sbjct: 80 AHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFL 139
Query: 96 SSFLLTQEVLPYMRKKKGGSIVYVSSIGG 124
S +LT LP + K+ GSIV VSS+ G
Sbjct: 140 SYVVLTVAALPML-KQSNGSIVVVSSLAG 167
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 99.6 bits (249), Expect = 2e-26
Identities = 32/151 (21%), Positives = 53/151 (35%), Gaps = 32/151 (21%)
Query: 5 TRLVGKVAVITASTEGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQNVSG 63
T+ VA++T GIG IA+ L+A G + I+ V + L G + V
Sbjct: 25 TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGAR-VIF 83
Query: 64 VVCHVANTDERQKLFEHC---------------------------SEVVWDKIFDVNLKS 96
+ +A+ Q + +D I VNL+
Sbjct: 84 LRADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRG 143
Query: 97 SFLLTQEVLPYMRK---KKGGSIVYVSSIGG 124
+ TQ VL M + SI+ ++S+
Sbjct: 144 TVFFTQAVLKAMLASDARASRSIINITSVSA 174
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 98.7 bits (247), Expect = 2e-26
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 27/141 (19%)
Query: 10 KVAVITASTEGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQNVSGVVCHV 68
V V+T ++ GIG AIA L G V+++ +R + + ++ G Q V
Sbjct: 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQ-AITFGGDV 60
Query: 69 ANTDERQKLFEHCSE-------VV------------------WDKIFDVNLKSSFLLTQE 103
+ + + + + + VV WD++ D+NL FL TQ
Sbjct: 61 SKEADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQA 120
Query: 104 VLPYMRKKKGGSIVYVSSIGG 124
M KK+ G I+ ++S+ G
Sbjct: 121 ATKIMMKKRKGRIINIASVVG 141
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 101 bits (255), Expect = 2e-26
Identities = 36/144 (25%), Positives = 58/144 (40%), Gaps = 30/144 (20%)
Query: 7 LVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVC 66
L GKVAV+T + GIG IA+ + +GA+VV + K G + +
Sbjct: 211 LDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGA-AEDLKRVADKVG---GTALTL 266
Query: 67 HVANTDERQKLFEHCSE--------VV------------------WDKIFDVNLKSSFLL 100
V D K+ H +E +V WD + VNL + L
Sbjct: 267 DVTADDAVDKITAHVTEHHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRL 326
Query: 101 TQEVLPYMRKKKGGSIVYVSSIGG 124
T+ ++ +GG ++ +SS+ G
Sbjct: 327 TEGLVGNGTIGEGGRVIGLSSMAG 350
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 98.2 bits (245), Expect = 3e-26
Identities = 14/140 (10%), Positives = 36/140 (25%), Gaps = 19/140 (13%)
Query: 4 ATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKE--------------SNVNKA 49
A + ++ +G + A V E S +A
Sbjct: 2 AASGEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQA 61
Query: 50 VETLQKEGHQNVSG---VVCHVANTDERQKLFEHCSEVVWDKIFDVNLKSSFLLTQEVLP 106
+ + G + VA D ++ ++ +S + +
Sbjct: 62 DQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATK 121
Query: 107 YMRKKKGGSIVYVSSIGGFK 126
+++ +GG + +
Sbjct: 122 HLK--EGGLLTLAGAKAALD 139
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 98.4 bits (246), Expect = 3e-26
Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 27/147 (18%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQNVSGV 64
+ ++A +T GIG +I +RL +G VV K +E + G
Sbjct: 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFD-FYAS 68
Query: 65 VCHVANTDERQKLFEHCSEVV-------------------------WDKIFDVNLKSSFL 99
+V + D ++ F+ V W + D NL S F
Sbjct: 69 EGNVGDWDSTKQAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFN 128
Query: 100 LTQEVLPYMRKKKGGSIVYVSSIGGFK 126
+T++V+ M ++ G I+ +SS+ G K
Sbjct: 129 VTKQVIDGMVERGWGRIINISSVNGQK 155
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 97.9 bits (245), Expect = 4e-26
Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 15/131 (11%)
Query: 10 KVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVCHVA 69
+ A++T + GIG AIA+ L A G V I+SR +++ + V
Sbjct: 3 RKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSLGAVPLPTDLEKDDPKGLVK 62
Query: 70 NTDE---------------RQKLFEHCSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGG 114
E +K S W ++ ++L +FLL Q P+M + G
Sbjct: 63 RALEALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWG 122
Query: 115 SIVYVSSIGGF 125
++++ S+ F
Sbjct: 123 RVLFIGSVTTF 133
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 98.2 bits (245), Expect = 8e-26
Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 27/147 (18%)
Query: 5 TRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGV 64
+ G+ AV+T GIG A A + GA +V+S + + +AV L+ +G GV
Sbjct: 27 SGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFD-AHGV 85
Query: 65 VCHVANTDERQKLFEHC-------------------------SEVVWDKIFDVNLKSSFL 99
VC V + DE +L + + W + D++L S
Sbjct: 86 VCDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIH 145
Query: 100 LTQEVLPYMRK-KKGGSIVYVSSIGGF 125
+ LP + + GG I + +S G
Sbjct: 146 AVEAFLPRLLEQGTGGHIAFTASFAGL 172
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 96.5 bits (241), Expect = 1e-25
Identities = 32/149 (21%), Positives = 61/149 (40%), Gaps = 33/149 (22%)
Query: 10 KVAVITASTEGIGFAIAKRLSAEGA-------SVVISSRKESNVNKAVETLQKEGHQNVS 62
+ +IT + +GIG AIA + +V+SSR +++ K + EG
Sbjct: 3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGAL-TD 61
Query: 63 GVVCHVANTDERQKLFEHCSE-------VV------------------WDKIFDVNLKSS 97
+ +++ + ++L H E +V +D + NLK +
Sbjct: 62 TITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGT 121
Query: 98 FLLTQEVLPYMRKKKGGSIVYVSSIGGFK 126
F LTQ + M ++ G I +++S+ K
Sbjct: 122 FFLTQALFALMERQHSGHIFFITSVAATK 150
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 96.1 bits (240), Expect = 1e-25
Identities = 30/141 (21%), Positives = 58/141 (41%), Gaps = 25/141 (17%)
Query: 9 GKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVCHV 68
KVAVIT ++ GIG AIA+ L+ +G ++ + +R + K L +E V V
Sbjct: 2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDV 61
Query: 69 ANTDERQKLFEHCSE-------VV------------------WDKIFDVNLKSSFLLTQE 103
+ + ++ + E VV + ++ +VNL + +
Sbjct: 62 SKAESVEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKA 121
Query: 104 VLPYMRKKKGGSIVYVSSIGG 124
L +++ G ++V S +
Sbjct: 122 FLDSLKRTGGLALVTTSDVSA 142
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 96.2 bits (240), Expect = 3e-25
Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 26/144 (18%)
Query: 7 LVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVC 66
+ G++ +IT + GIG A + + +V+ + + + + G + V V
Sbjct: 29 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAK-VHTFVV 87
Query: 67 HVANTDERQKL-------------------------FEHCSEVVWDKIFDVNLKSSFLLT 101
+N ++ + +K F+VN+ + F T
Sbjct: 88 DCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTT 147
Query: 102 QEVLPYMRKKKGGSIVYVSSIGGF 125
+ LP M K G IV V+S G
Sbjct: 148 KAFLPAMTKNNHGHIVTVASAAGH 171
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 94.9 bits (237), Expect = 6e-25
Identities = 31/146 (21%), Positives = 56/146 (38%), Gaps = 37/146 (25%)
Query: 4 ATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSG 63
V + ++T GIG AIA+RL+A+G V ++ R G
Sbjct: 10 KPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLF------------G 57
Query: 64 VVCHVANTDERQKLFEHCSE-------VV------------------WDKIFDVNLKSSF 98
V V ++D + F E +V ++K+ + NL +F
Sbjct: 58 VEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAF 117
Query: 99 LLTQEVLPYMRKKKGGSIVYVSSIGG 124
+ Q M++ K G ++++ S+ G
Sbjct: 118 RVAQRASRSMQRNKFGRMIFIGSVSG 143
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 94.5 bits (236), Expect = 7e-25
Identities = 26/143 (18%), Positives = 54/143 (37%), Gaps = 37/143 (25%)
Query: 7 LVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVC 66
+ + ++T GIG AIA+ + G V I+ R E + V C
Sbjct: 19 HMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSG------------EPPEGFLAVKC 66
Query: 67 HVANTDERQKLFEHCSE-------VV------------------WDKIFDVNLKSSFLLT 101
+ +T++ ++ ++ E ++ + + + NL +F +
Sbjct: 67 DITDTEQVEQAYKEIEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVV 126
Query: 102 QEVLPYMRKKKGGSIVYVSSIGG 124
+ M + K G +V +SS+ G
Sbjct: 127 KRANRAMLRAKKGRVVLISSVVG 149
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 94.2 bits (235), Expect = 2e-24
Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 29/144 (20%)
Query: 7 LVGKVAVITASTEGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQNVSGVV 65
KVA++T ++ GIG AIA RL+++G +VVI+ + K + + ++ G + ++
Sbjct: 25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALT-AQ 83
Query: 66 CHVANTDERQKLFEHC-------------------------SEVVWDKIFDVNLKSSFLL 100
V++ ++LF + V+D++ VNLK +F
Sbjct: 84 ADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNT 143
Query: 101 TQEVLPYMRKKKGGSIVYVSSIGG 124
+E +R GG I+ +S+
Sbjct: 144 LREAAQRLR--VGGRIINMSTSQV 165
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 93.4 bits (233), Expect = 3e-24
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 29/147 (19%)
Query: 4 ATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQNVS 62
+ L GKVA+ T + GIG IA L GASVV++ + V L+K G Q V+
Sbjct: 16 SKPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVA 75
Query: 63 GVVCHVANTDERQKLF-------------------------EHCSEVVWDKIFDVNLKSS 97
+ ++ E LF ++ ++DK+F++N +
Sbjct: 76 -IQADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQ 134
Query: 98 FLLTQEVLPYMRKKKGGSIVYVSSIGG 124
F + Q+ L + R +GG I+ SSI
Sbjct: 135 FFVAQQGLKHCR--RGGRIILTSSIAA 159
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 93.0 bits (232), Expect = 5e-24
Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 29/147 (19%)
Query: 1 MFKATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQ 59
M + L GK A +T + GIG AIAKRL+ EGA+V ++ V +++ G +
Sbjct: 23 MMTSISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGR 82
Query: 60 NVSGVVCHVANTDERQKLFEHC-------------------------SEVVWDKIFDVNL 94
V+ + + + ++ + +D++ VN
Sbjct: 83 AVA-IRADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNF 141
Query: 95 KSSFLLTQEVLPYMRKKKGGSIVYVSS 121
++ F+ + ++ GG I+ + S
Sbjct: 142 RAPFVAIRSASRHLG--DGGRIITIGS 166
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 92.6 bits (231), Expect = 6e-24
Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 29/145 (20%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQNVSGV 64
RL GKVA++T S GIG A+A L GA VV++ + + K V ++ G ++ +
Sbjct: 15 RLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIA-I 73
Query: 65 VCHVANTDERQKLFEH-------------------------CSEVVWDKIFDVNLKSSFL 99
+ E KLF+ +E +D++F +N + F
Sbjct: 74 KADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFF 133
Query: 100 LTQEVLPYMRKKKGGSIVYVSSIGG 124
+ +E ++ +GG IV SS
Sbjct: 134 VAREAYRHLT--EGGRIVLTSSNTS 156
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 92.7 bits (231), Expect = 7e-24
Identities = 30/146 (20%), Positives = 60/146 (41%), Gaps = 29/146 (19%)
Query: 5 TRLVGKVAVITASTEGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQNVSG 63
L GKVA++T + GIG +A L G V+++ + + + V ++K G
Sbjct: 25 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAAC- 83
Query: 64 VVCHVANTDERQKLFEHC-------------------------SEVVWDKIFDVNLKSSF 98
V +V ++ ++FE + +D++F +N + F
Sbjct: 84 VKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQF 143
Query: 99 LLTQEVLPYMRKKKGGSIVYVSSIGG 124
+ +E ++ GG ++ + SI G
Sbjct: 144 FVAREAYKHLE--IGGRLILMGSITG 167
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 92.3 bits (230), Expect = 1e-23
Identities = 27/172 (15%), Positives = 48/172 (27%), Gaps = 46/172 (26%)
Query: 1 MFKATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRK-ESNVNKAVETLQKEGHQ 59
+ + + + AV+T + + IG AIA +L G VVI + L KE
Sbjct: 15 VPRGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSN 74
Query: 60 NVSGVVCHVANTDER----QKLFEHC---------------------------------- 81
+ N++ +++ C
Sbjct: 75 TAVVCQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGK 134
Query: 82 -SEVVWDKIFDVNLKSSFLLTQEVLPYMR------KKKGGSIVYVSSIGGFK 126
E ++ N + FLLT + SIV + +
Sbjct: 135 TVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQ 186
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 91.1 bits (227), Expect = 3e-23
Identities = 28/154 (18%), Positives = 57/154 (37%), Gaps = 31/154 (20%)
Query: 1 MFKATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQ 59
++ + V ++T + GIG A+ + + +G V ++ + + V + + G +
Sbjct: 18 LYFQSMSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGE 77
Query: 60 NVSGVVCHVANTDERQKLFEHC--------------------------SEVVWDKIFDVN 93
V+ + V N + +F S +++ VN
Sbjct: 78 AVA-IPGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVN 136
Query: 94 LKSSFLLTQEVLPYMRKKK---GGSIVYVSSIGG 124
+ S L E + M + GG+IV VSS+
Sbjct: 137 VTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAA 170
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 90.7 bits (226), Expect = 3e-23
Identities = 27/145 (18%), Positives = 51/145 (35%), Gaps = 32/145 (22%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
L K+AV+T +T G+G I K LS + + E + L + V +
Sbjct: 2 SLKKKIAVVTGATGGMGIEIVKDLSRDHIVYALGRNPE-----HLAALAEIE--GVEPIE 54
Query: 66 CHVANTDERQKLFEHCSE------VV------------------WDKIFDVNLKSSFLLT 101
+ + + +V W D+N+ L+
Sbjct: 55 SDIVKEVLEEGGVDKLKNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELS 114
Query: 102 QEVLPYMRKKKGGSIVYVSSIGGFK 126
+++LP +R G ++Y++S G
Sbjct: 115 RQLLPALR-AASGCVIYINSGAGNG 138
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 91.7 bits (228), Expect = 3e-23
Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 32/153 (20%)
Query: 5 TRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQ-NVSG 63
G+ A +T G+G + ++L +G V I+ ++ +++KA+ TL+ EG V G
Sbjct: 4 KDFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMG 63
Query: 64 VVCHVANTDERQKL-------------------------FEHCSEVVWDKIFDVNLKSSF 98
V VA+ + + E S WD + VNL
Sbjct: 64 VQLDVASREGFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVV 123
Query: 99 LLTQEVLPYMRKK------KGGSIVYVSSIGGF 125
+P M ++ KGG +V +S+ F
Sbjct: 124 NGVTTFVPRMVERVKAGEQKGGHVVNTASMAAF 156
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 90.7 bits (226), Expect = 3e-23
Identities = 35/160 (21%), Positives = 59/160 (36%), Gaps = 40/160 (25%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVI-------------SSRKESNVNKAVET 52
L G+VA IT + G G + A RL+AEGA ++ + ++++
Sbjct: 12 SLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARL 71
Query: 53 LQKEGHQNVSGVVCHVANTDE-------------------------RQKLFEHCSEVVWD 87
++ +G + V V + ++ WD
Sbjct: 72 VEDQGRK-ALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWD 130
Query: 88 KIFDVNLKSSFLLTQEVLPYMRK-KKGGSIVYVSSIGGFK 126
+ VNL ++ + +P M + GGSIV VSS G K
Sbjct: 131 TVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLK 170
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 90.7 bits (226), Expect = 5e-23
Identities = 35/151 (23%), Positives = 57/151 (37%), Gaps = 35/151 (23%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVIS-------------------------- 39
RL + A++T GIG A A + EGA V I+
Sbjct: 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLL 105
Query: 40 ---SRKESNVNKAV-ETLQKEGHQNVSGVVCHVANTDERQKLFEHCSEVVWDKIFDVNLK 95
ES V + + G ++ + VA + + + + F VN+
Sbjct: 106 PGDLSDESFARSLVHKAREALGGLDI---LALVAGKQTAIPEIKDLTSEQFQQTFAVNVF 162
Query: 96 SSFLLTQEVLPYMRKKKGGSIVYVSSIGGFK 126
+ F +TQE +P + KG SI+ SSI ++
Sbjct: 163 ALFWITQEAIPLL--PKGASIITTSSIQAYQ 191
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 90.3 bits (225), Expect = 5e-23
Identities = 29/160 (18%), Positives = 60/160 (37%), Gaps = 40/160 (25%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVI-------------SSRKESNVNKAVET 52
+L G+VA IT + G G A A R++AEGA ++ ++++ V
Sbjct: 8 KLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRL 67
Query: 53 LQKEGHQNVSGVVCHVANTDE-------------------------RQKLFEHCSEVVWD 87
++ + + V + D + ++ + +
Sbjct: 68 VEAANRR-IVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFR 126
Query: 88 KIFDVNLKSSFLLTQEVLPYMRKK-KGGSIVYVSSIGGFK 126
+ D+N+ ++ P + + +GGSI+ +SS G K
Sbjct: 127 DVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMK 166
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 89.7 bits (223), Expect = 5e-23
Identities = 18/138 (13%), Positives = 36/138 (26%), Gaps = 21/138 (15%)
Query: 7 LVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKE-----------------SNVNKA 49
+ ++ +G AI + G +V+
Sbjct: 1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSI 60
Query: 50 VE-TLQKEGHQNVSGVVCHVANTDERQKLFEHCSEVVWDKIFDVNLKSSFLLTQEVLPYM 108
+E T V GV C VA D + ++ SS + + ++
Sbjct: 61 LEQTASSLQGSQVDGVFC-VAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHL 119
Query: 109 RKKKGGSIVYVSSIGGFK 126
+ GG + +
Sbjct: 120 K--PGGLLQLTGAAAAMG 135
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 90.4 bits (225), Expect = 5e-23
Identities = 28/151 (18%), Positives = 62/151 (41%), Gaps = 28/151 (18%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQ-NVSGV 64
R ++A++T ++ GIG A+A+ L +G VV +R N+ + + G+ +
Sbjct: 29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPY 88
Query: 65 VCHVANTDERQKLFEHCSEVV-------------------------WDKIFDVNLKSSFL 99
C ++N ++ +F W +F+VN+ + +
Sbjct: 89 RCDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSI 148
Query: 100 LTQEVLPYMRKKKGGS--IVYVSSIGGFKQF 128
T+E M+++ I+ ++S+ G +
Sbjct: 149 CTREAYQSMKERNVDDGHIININSMSGHRVL 179
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 89.2 bits (222), Expect = 6e-23
Identities = 27/139 (19%), Positives = 54/139 (38%), Gaps = 27/139 (19%)
Query: 10 KVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVCHVA 69
+ VIT ++ G+G +AK AEG + ++ R ES + T+ NV +A
Sbjct: 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSES----KLSTVTNCLSNNVGYRARDLA 57
Query: 70 NTDERQKLFEHCSEVV----------------------WDKIFDVNLKSSFLLTQEVLPY 107
+ E ++LFE + + + NL S+ + +E++
Sbjct: 58 SHQEVEQLFEQLDSIPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKR 117
Query: 108 MRKKKGGSIVYVSSIGGFK 126
+ + +V + S +
Sbjct: 118 YKDQPVN-VVMIMSTAAQQ 135
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 89.9 bits (224), Expect = 7e-23
Identities = 36/158 (22%), Positives = 52/158 (32%), Gaps = 38/158 (24%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKE---------SNVNKAVET---L 53
GK A+IT G+G + A L+ GA + I R E + + ET +
Sbjct: 7 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALV 66
Query: 54 QKEGHQNVSGVVCHVANTDE-------------------------RQKLFEHCSEVVWDK 88
+K G + V + L WD+
Sbjct: 67 EKTG-RRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDE 125
Query: 89 IFDVNLKSSFLLTQEVLPYMRKKKGGSIVYVSSIGGFK 126
+ NL +F V P M K+ G IV VSS+ G
Sbjct: 126 VIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHS 163
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 89.9 bits (224), Expect = 8e-23
Identities = 34/155 (21%), Positives = 55/155 (35%), Gaps = 35/155 (22%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVI------------SSRKESNVNKAVETL 53
L GKVA IT + G G A A RL+A+GA ++ + V+ +
Sbjct: 10 PLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLV 69
Query: 54 QKEGHQNVSGVVCHVANTDERQKLFEHC---------------------SEVVWDKIFDV 92
+ G + + V + + + + W + DV
Sbjct: 70 EDIGSR-IVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDV 128
Query: 93 NLKSSFLLTQEVLPYMRK-KKGGSIVYVSSIGGFK 126
NL + + +P + K GGSIV +SS G
Sbjct: 129 NLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLA 163
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 90.0 bits (224), Expect = 9e-23
Identities = 28/172 (16%), Positives = 51/172 (29%), Gaps = 38/172 (22%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVI------------SSRKESNVNKAVETL 53
R+ KV ++T G G + A +L+ EGA +++ ++ +A +
Sbjct: 7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEV 66
Query: 54 QKEGHQNVSGVVCHVANTDERQKLFEHC-----------------------SEVVWDKIF 90
+K G + V + + + + F
Sbjct: 67 EKTGRK-AYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAF 125
Query: 91 DVNLKSSFLLTQEVLPYMRKKKGGSIVYVSSIGGFKQFKVSILILRPATPYQ 142
DV+ LPY+ G SI+ S+ G P P
Sbjct: 126 DVDFVGVINTVHAALPYL--TSGASIITTGSVAGLIAAAQPPGAGGPQGPGG 175
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 90.0 bits (224), Expect = 1e-22
Identities = 34/160 (21%), Positives = 61/160 (38%), Gaps = 40/160 (25%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVI------------SSRKESNVNKAVETL 53
++ GKVA IT + G G + A L+ EGA ++ ++ + V +
Sbjct: 25 KVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQV 84
Query: 54 QKEGHQNVSGVVCHVANTDERQKLFEHC--------------------------SEVVWD 87
+ G + + V + D Q + W
Sbjct: 85 EALGRR-IIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWR 143
Query: 88 KIFDVNLKSSFLLTQEVLPYMRKK-KGGSIVYVSSIGGFK 126
+ DVNL +++ + +P++ +GGSIV+ SSIGG +
Sbjct: 144 DMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLR 183
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 89.6 bits (223), Expect = 1e-22
Identities = 33/164 (20%), Positives = 62/164 (37%), Gaps = 44/164 (26%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVI----------------SSRKESNVNKA 49
R+ GKVA +T + G G + A RL+ EGA ++ + ++ +
Sbjct: 8 RVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAET 67
Query: 50 VETLQKEGHQNVSGVVCHVANTDERQKLFEHC--------------------------SE 83
+ ++ + + V + D + + SE
Sbjct: 68 ADLVKGHNRR-IVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSE 126
Query: 84 VVWDKIFDVNLKSSFLLTQEVLPYMRKK-KGGSIVYVSSIGGFK 126
W ++ D+NL + + +P+M +GGSI+ SS+GG K
Sbjct: 127 EDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVGGLK 170
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 88.8 bits (221), Expect = 1e-22
Identities = 21/147 (14%), Positives = 36/147 (24%), Gaps = 36/147 (24%)
Query: 10 KVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVCHVA 69
V IT S GIG A+ + L+ G +V+ R ++++ + T V +
Sbjct: 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRET----AVAAVLD 57
Query: 70 NTDER--------------------------------QKLFEHCSEVVWDKIFDVNLKSS 97
L E S V ++
Sbjct: 58 RCGGVLDGLVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAA 117
Query: 98 FLLTQEVLPYMRKKKGGSIVYVSSIGG 124
LP + G +
Sbjct: 118 TQPGAAELPMVEAMLAGDEARAIELAE 144
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 88.0 bits (219), Expect = 2e-22
Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 35/152 (23%)
Query: 5 TRLVGKVAVITASTEGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQNVSG 63
+ L GKVA++T ++ GIG AIAKRL+ +GA V I ++ + V +Q G S
Sbjct: 3 SMLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFS- 61
Query: 64 VVCHVANTDERQKLFEHC-------------------------------SEVVWDKIFDV 92
+ ++ + + L+ +E +D++ V
Sbjct: 62 IGANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSV 121
Query: 93 NLKSSFLLTQEVLPYMRKKKGGSIVYVSSIGG 124
N K+ F + Q+ L +R I+ +SS
Sbjct: 122 NAKAPFFIIQQALSRLR--DNSRIINISSAAT 151
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 87.6 bits (218), Expect = 4e-22
Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 26/147 (17%)
Query: 7 LVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVC 66
++ KV +IT ++ GIG IA+ L GA +++ +R+++ + ++ G V
Sbjct: 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGT-ALAQVL 60
Query: 67 HVANTDERQKLFEHCSE-------VV------------------WDKIFDVNLKSSFLLT 101
V + + + +V W+++ DVN+K
Sbjct: 61 DVTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGI 120
Query: 102 QEVLPYMRKKKGGSIVYVSSIGGFKQF 128
VLP M ++ G I+ + SIG
Sbjct: 121 GAVLPIMEAQRSGQIINIGSIGALSVV 147
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 88.5 bits (220), Expect = 5e-22
Identities = 35/159 (22%), Positives = 63/159 (39%), Gaps = 39/159 (24%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVI------------SSRKESNVNKAVETL 53
RL GKVA IT + G G A RL+ +GA +V + + + V +
Sbjct: 43 RLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLV 102
Query: 54 QKEGHQNVSGVVCHVANTDERQKLFEHC-------------------------SEVVWDK 88
+++G + + V + Q + + ++ W
Sbjct: 103 EEQG-RRIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSD 161
Query: 89 IFDVNLKSSFLLTQEVLPYMRKK-KGGSIVYVSSIGGFK 126
I NL ++ + VLP M ++ +GGS+++VSS G +
Sbjct: 162 ILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLR 200
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 86.8 bits (216), Expect = 5e-22
Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 30/148 (20%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
+ +IT ++ GIG A A+ L A+G V + +R E ++ L E + +
Sbjct: 2 EGMKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEK----RLQALAAEL-EGALPLP 56
Query: 66 CHVANTDERQKLFEHCSE-------VV------------------WDKIFDVNLKSSFLL 100
V + + E +V W + D NL +FL
Sbjct: 57 GDVREEGDWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLG 116
Query: 101 TQEVLPYMRKKKGGSIVYVSSIGGFKQF 128
+ +P + ++ GG+IV V S+ G F
Sbjct: 117 IRHAVPALLRRGGGTIVNVGSLAGKNPF 144
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 87.3 bits (217), Expect = 7e-22
Identities = 21/167 (12%), Positives = 41/167 (24%), Gaps = 46/167 (27%)
Query: 4 ATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQNVS 62
AVIT IG +IA RL +G VV+ E + V L +
Sbjct: 6 HEASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAV 65
Query: 63 GVVCHVANTDE----RQKLFEHC------------------------------------S 82
++ + + + +
Sbjct: 66 LCKGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPI 125
Query: 83 EVVWDKIFDVNLKSSFLLTQEVLPYMR-----KKKGGSIVYVSSIGG 124
+ ++F N + L + + + S+V +
Sbjct: 126 DAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMT 172
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 85.0 bits (211), Expect = 1e-21
Identities = 16/125 (12%), Positives = 39/125 (31%), Gaps = 14/125 (11%)
Query: 9 GKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVN------KAVETLQKE-GHQNV 61
++ ++ +G A+ +RL + A V+ + R +V +++ + ++ G V
Sbjct: 3 AMKILLIGASGTLGSAVKERL-EKKAEVITAGRHSGDVTVDITNIDSIKKMYEQVGK--V 59
Query: 62 SGVVCHVANTDERQKLFEHCSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVYVSS 121
+V + + L L + + GS +
Sbjct: 60 DAIVSATGSA--TFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLN--DKGSFTLTTG 115
Query: 122 IGGFK 126
I
Sbjct: 116 IMMED 120
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 85.4 bits (212), Expect = 3e-21
Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 9/121 (7%)
Query: 10 KVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVCHVA 69
+ VI+ GIG A K L A G +V +++ V + T EG + + +A
Sbjct: 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLST--AEGRKQA--IADVLA 57
Query: 70 NTDERQKLFEHC-----SEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVYVSSIGG 124
+ C V + VN + L LP ++K + V +SS+
Sbjct: 58 KCSKGMDGLVLCAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVAS 117
Query: 125 F 125
Sbjct: 118 A 118
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 84.9 bits (211), Expect = 7e-21
Identities = 32/150 (21%), Positives = 63/150 (42%), Gaps = 34/150 (22%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVIS-------------------------- 39
+L GK +IT GIG A++ + EGA++ I+
Sbjct: 44 KLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLP 103
Query: 40 --SRKESNVNKAVE-TLQKEGHQNVSGVVCHVANTDERQKLFEHCSEVVWDKIFDVNLKS 96
E + V+ T+++ G N+ + + Q+ E+ + +K F +N+ S
Sbjct: 104 GDLSDEQHCKDIVQETVRQLGSLNI---LVNNVAQQYPQQGLEYITAEQLEKTFRINIFS 160
Query: 97 SFLLTQEVLPYMRKKKGGSIVYVSSIGGFK 126
F +T+ L ++ K+G I+ +SI ++
Sbjct: 161 YFHVTKAALSHL--KQGDVIINTASIVAYE 188
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 83.7 bits (208), Expect = 1e-20
Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 27/150 (18%)
Query: 4 ATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSG 63
+ L GKVA+IT ++ GIG A A+ L+AEGA+V I++R+ + + L G + V
Sbjct: 2 PSALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAK-VHV 60
Query: 64 VVCHVANTDERQKLFEHCSE-------VV------------------WDKIFDVNLKSSF 98
+ VA+ E +V W ++ D NL
Sbjct: 61 LELDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLM 120
Query: 99 LLTQEVLPYMRKKKGGSIVYVSSIGGFKQF 128
+T+ LP++ + K G++V +SSI G
Sbjct: 121 YMTRAALPHLLRSK-GTVVQMSSIAGRVNV 149
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 83.4 bits (207), Expect = 2e-20
Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 32/150 (21%)
Query: 4 ATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSG 63
+ K+ VIT ++ GIG AIA+R S EG +++ +R+ E L+ N
Sbjct: 11 GRGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRV-------ERLKALNLPNTLC 63
Query: 64 VVCHVANTDERQKLFEHCSE-------VV------------------WDKIFDVNLKSSF 98
V + + +V W ++FDVN+
Sbjct: 64 AQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLL 123
Query: 99 LLTQEVLPYMRKKKGGSIVYVSSIGGFKQF 128
Q VL M+ + G+I+ +SSI G K F
Sbjct: 124 NGMQAVLAPMKARNCGTIINISSIAGKKTF 153
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 81.9 bits (203), Expect = 7e-20
Identities = 31/150 (20%), Positives = 54/150 (36%), Gaps = 29/150 (19%)
Query: 4 ATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSG 63
+ IT +T G G A A+R + G S+V++ R+E + L + V
Sbjct: 16 RGSHMSSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTR--VLP 73
Query: 64 VVCHVANTDERQKLFEHCSE-------VV-------------------WDKIFDVNLKSS 97
+ V + ++ E ++ WD + D N+K
Sbjct: 74 LTLDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGL 133
Query: 98 FLLTQEVLPYMRKKK-GGSIVYVSSIGGFK 126
T+ +LP + G SIV + S+ G
Sbjct: 134 LYSTRLLLPRLIAHGAGASIVNLGSVAGKW 163
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 82.4 bits (204), Expect = 1e-19
Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 30/154 (19%)
Query: 1 MFKATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVI---------SSRKESNVNKAVE 51
M R G+V ++T + G+G A A + GA VV+ + S +K VE
Sbjct: 1 MASPLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVE 60
Query: 52 TLQKEG------HQNVSGVVCHVANTDE---------------RQKLFEHCSEVVWDKIF 90
+++ G + +V V + R + F S+ WD I
Sbjct: 61 EIRRRGGKAVANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQ 120
Query: 91 DVNLKSSFLLTQEVLPYMRKKKGGSIVYVSSIGG 124
V+L+ SF +T+ +M+K+ G I+ +S G
Sbjct: 121 RVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASG 154
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 80.4 bits (199), Expect = 3e-19
Identities = 29/161 (18%), Positives = 54/161 (33%), Gaps = 40/161 (24%)
Query: 1 MFKATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQN 60
M + G A+++ G+G A +RL A+G VVI+ + L
Sbjct: 22 MVTIKQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGN----R 77
Query: 61 VSGVVCHVANTDERQKLFEHCSE-------VV-----------------------WDKIF 90
V +V + D E ++ VV + K
Sbjct: 78 AEFVSTNVTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTI 137
Query: 91 DVNLKSSFLLTQEVLPYMRKKK------GGSIVYVSSIGGF 125
D+ L ++ + + V + + G++V +SI G+
Sbjct: 138 DLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGY 178
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 82.1 bits (203), Expect = 3e-19
Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 32/150 (21%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVI---------SSRKESNVNKAVETLQKE 56
KV +IT + G+G + + GA VV+ + V+ + K
Sbjct: 5 DFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKN 64
Query: 57 GHQNVSGVVCHVANTDE----------------------RQKLFEHCSEVVWDKIFDVNL 94
G V+ +V + D+ R + +E + + DV+L
Sbjct: 65 GGVAVA-DYNNVLDGDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHL 123
Query: 95 KSSFLLTQEVLPYMRKKKGGSIVYVSSIGG 124
+F +T+ PY +K+K G IV SS G
Sbjct: 124 NGAFAVTKAAWPYFQKQKYGRIVNTSSPAG 153
Score = 72.8 bits (179), Expect = 6e-16
Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 26/147 (17%)
Query: 1 MFKATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQN 60
L KV +IT + G+G AK + GA VV++ + K V+ ++ G +
Sbjct: 314 GAPTVSLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDF--KDATKTVDEIKAAGGEA 371
Query: 61 VSGVVCHVANTDE-----------------------RQKLFEHCSEVVWDKIFDVNLKSS 97
VA E R + F S+ WD + V+L +
Sbjct: 372 W-PDQHDVAKDSEAIIKNVIDKYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGT 430
Query: 98 FLLTQEVLPYMRKKKGGSIVYVSSIGG 124
F L++ PY +K+ G I+ ++S G
Sbjct: 431 FNLSRLAWPYFVEKQFGRIINITSTSG 457
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 80.2 bits (198), Expect = 5e-19
Identities = 26/146 (17%), Positives = 58/146 (39%), Gaps = 29/146 (19%)
Query: 9 GKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVN----KAVETLQKEGHQNVSGV 64
K+ +IT ++ G G A+ L+ G V S R N +A+ ++ ++ +
Sbjct: 5 KKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTL 64
Query: 65 VCHVANTDERQKL-------------------------FEHCSEVVWDKIFDVNLKSSFL 99
V + + E + + +++D+N+ S+
Sbjct: 65 ELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQR 124
Query: 100 LTQEVLPYMRKKKGGSIVYVSSIGGF 125
+ + LP+MR++K G ++++SS
Sbjct: 125 VNRAALPHMRRQKHGLLIWISSSSSA 150
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 79.6 bits (197), Expect = 7e-19
Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 30/153 (19%)
Query: 4 ATRLVGKVAVITASTEGIGFAIAKRLSAEG---ASVVISSRKESNVNKAVETLQKEGHQ- 59
A RL K +IT ++ GIG A A +++++R+ + + +T+ +E
Sbjct: 28 AERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNA 87
Query: 60 NVSGVVCHVANTDERQKLFEHCSE-------VV-------------------WDKIFDVN 93
V + ++ + E+ + +V +FD N
Sbjct: 88 KVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTN 147
Query: 94 LKSSFLLTQEVLPYMRKKKGGSIVYVSSIGGFK 126
+ + +TQ VLP + K G IV + SI G
Sbjct: 148 VTALINITQAVLPIFQAKNSGDIVNLGSIAGRD 180
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 79.6 bits (196), Expect = 9e-19
Identities = 36/176 (20%), Positives = 60/176 (34%), Gaps = 56/176 (31%)
Query: 5 TRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEG------H 58
T + AV+T +GIGF I K+LS+ G VV++ R + ++AVE L+ H
Sbjct: 8 TVTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFH 67
Query: 59 Q----------------------------NVSGVVCHVANTDERQKLFEHCSEVV----- 85
Q N +GV + D + + E
Sbjct: 68 QLDVTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVK 127
Query: 86 -----------------WDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVYVSSIGG 124
++ +N +T+ ++P ++ IV VSS G
Sbjct: 128 IYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQLSDSPRIVNVSSSTG 183
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 78.6 bits (194), Expect = 2e-18
Identities = 25/185 (13%), Positives = 48/185 (25%), Gaps = 63/185 (34%)
Query: 5 TRLVGKVAVITASTEGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQNVSG 63
T VA++T + + +G +IA+ L AEG +V + R + N TL +
Sbjct: 42 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAIT 101
Query: 64 VVCHVANT-----------------DERQKLFEHCSE----------------------- 83
V ++N +L C
Sbjct: 102 VQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRN 161
Query: 84 ----------------VVWDKIFDVNLKSSFLLTQEVLPYMR------KKKGGSIVYVSS 121
+F N + + L + + + SI+ +
Sbjct: 162 DEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVD 221
Query: 122 IGGFK 126
+
Sbjct: 222 AMTNQ 226
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 78.2 bits (193), Expect = 2e-18
Identities = 26/185 (14%), Positives = 49/185 (26%), Gaps = 63/185 (34%)
Query: 5 TRLVGKVAVITASTEGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQNVSG 63
T VA++T + + +G +IA+ L AEG +V + R + N TL +
Sbjct: 5 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAIT 64
Query: 64 VVCHVANT-----------------DERQKLFEHC------------------------- 81
V ++N +L C
Sbjct: 65 VQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRN 124
Query: 82 --------------SEVVWDKIFDVNLKSSFLLTQEVLPYMR------KKKGGSIVYVSS 121
E +F N + + L + + + SI+ +
Sbjct: 125 DEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVD 184
Query: 122 IGGFK 126
+
Sbjct: 185 AMTNQ 189
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 77.3 bits (191), Expect = 4e-18
Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 29/141 (20%)
Query: 10 KVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVCHVA 69
KV ++T ++ G G AIA+ A G +V+ ++R+ A++ L + V
Sbjct: 6 KVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTE----ALDDLVAAYPDRAEAISLDVT 61
Query: 70 NTDERQKL-------------------------FEHCSEVVWDKIFDVNLKSSFLLTQEV 104
+ + + FE +E +F++++ LT+ +
Sbjct: 62 DGERIDVVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRAL 121
Query: 105 LPYMRKKKGGSIVYVSSIGGF 125
LP MR++ GS+V +SS GG
Sbjct: 122 LPQMRERGSGSVVNISSFGGQ 142
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 76.4 bits (189), Expect = 6e-18
Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 30/142 (21%)
Query: 11 VAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVCHVAN 70
+ ++T +T G G I +R +G V+ + R++ ++ L+ E N+ V N
Sbjct: 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQE----RLQELKDELGDNLYIAQLDVRN 57
Query: 71 TDERQKLFEHCSEVV--------------------------WDKIFDVNLKSSFLLTQEV 104
+++ W+ + D N K +T+ V
Sbjct: 58 RAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAV 117
Query: 105 LPYMRKKKGGSIVYVSSIGGFK 126
LP M ++ G I+ + S G
Sbjct: 118 LPGMVERNHGHIINIGSTAGSW 139
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 77.5 bits (191), Expect = 1e-17
Identities = 39/151 (25%), Positives = 60/151 (39%), Gaps = 32/151 (21%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVI---------SSRKESNVNKAVETLQKE 56
R G+VAV+T + G+G A + GA VV+ + + V+ ++K
Sbjct: 16 RYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKA 75
Query: 57 GHQNVSGVVCHVANTDE----------------------RQKLFEHCSEVVWDKIFDVNL 94
G + V V + + R + SE W+ + DV+L
Sbjct: 76 GGEAV-ADYNSVIDGAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHL 134
Query: 95 KSSFLLTQEVLPYMRKKKGGSIVYVSSIGGF 125
K SF TQ PYM+K+ G I+ SS G
Sbjct: 135 KGSFKCTQAAFPYMKKQNYGRIIMTSSNSGI 165
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 75.0 bits (185), Expect = 2e-17
Identities = 28/155 (18%), Positives = 52/155 (33%), Gaps = 39/155 (25%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
+L +V ++T ++ G+G A+ + L+ EGA+V+ K + L V
Sbjct: 4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGA----AVRFRN 59
Query: 66 CHVANTDERQKLFEHCSE-------VV----------------------WDKIFDVNLKS 96
V N + + +V + + VNL
Sbjct: 60 ADVTNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIG 119
Query: 97 SFLLTQEVLPYMRKKK------GGSIVYVSSIGGF 125
+F + + M + + G IV +SI F
Sbjct: 120 TFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAF 154
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 75.1 bits (185), Expect = 3e-17
Identities = 30/142 (21%), Positives = 51/142 (35%), Gaps = 29/142 (20%)
Query: 9 GKVAVITASTEGIGFAIAKRL-SAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVCH 67
VA++T +GIG AI + L VV+++R + AV+ LQ EG +
Sbjct: 4 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL-SPRFHQLD 62
Query: 68 VANTDERQKLFEH-------------------------CSEVVWDKIFDVNLKSSFLLTQ 102
+ + + L + + + N + +
Sbjct: 63 IDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCT 122
Query: 103 EVLPYMRKKKGGSIVYVSSIGG 124
E+LP + K G +V VSSI
Sbjct: 123 ELLPLI--KPQGRVVNVSSIMS 142
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 74.6 bits (184), Expect = 3e-17
Identities = 33/157 (21%), Positives = 52/157 (33%), Gaps = 41/157 (26%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
+ G VAVIT G+G A A+RL +GAS V+ S + L N
Sbjct: 9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGN----NCVFAP 64
Query: 66 CHVANTDERQKLFEHCSE-------VV------------------------WDKIFDVNL 94
V + + Q V + ++ DVNL
Sbjct: 65 ADVTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNL 124
Query: 95 KSSFLLTQEVLPYMRKKK------GGSIVYVSSIGGF 125
+F + + V M + + G I+ +S+ F
Sbjct: 125 MGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAF 161
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 72.4 bits (178), Expect = 4e-16
Identities = 27/145 (18%), Positives = 51/145 (35%), Gaps = 30/145 (20%)
Query: 10 KVAVIT-ASTEGIGFAIAKRLSAE---GASVVISSRKESNVNKAVETLQKEG--HQNVSG 63
V +IT S+ GIG +A RL+++ V + R + E + ++
Sbjct: 3 TVVLITGCSS-GIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLET 61
Query: 64 VVCHVANTDERQKL-----------------------FEHCSEVVWDKIFDVNLKSSFLL 100
+ V ++ E E + DVN+ + +
Sbjct: 62 LQLDVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRM 121
Query: 101 TQEVLPYMRKKKGGSIVYVSSIGGF 125
Q LP M+++ G ++ S+GG
Sbjct: 122 LQAFLPDMKRRGSGRVLVTGSVGGL 146
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 71.5 bits (176), Expect = 4e-16
Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 43/156 (27%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVV 65
+ VAV+T G+G A KRL GA VV+ + E + +
Sbjct: 6 EIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRG-------EDVVADLGDRARFAA 58
Query: 66 CHVANTDERQKLFE------------HC----------------SEVVWDKIFDVNLKSS 97
V + + +C S + KI D+NL S
Sbjct: 59 ADVTDEAAVASALDLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGS 118
Query: 98 FLLTQEVLPYMRK--------KKGGSIVYVSSIGGF 125
F + + + K ++ G I+ +S+ F
Sbjct: 119 FNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAF 154
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 72.4 bits (178), Expect = 5e-16
Identities = 37/160 (23%), Positives = 60/160 (37%), Gaps = 42/160 (26%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVI----------SSRKESNVNKAVETLQK 55
+ G+V ++T + GIG A A +AEGA VV+ + S V+ +
Sbjct: 24 VVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITA 83
Query: 56 EGHQNVSGVVCHVANTDE-------------------------RQKLFEHCSEVVWDKIF 90
G + V+ +VA+ D+ R ++ + SE +D +
Sbjct: 84 AGGEAVA-DGSNVADWDQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVI 142
Query: 91 DVNLKSSFLLTQEVLPYMR------KKKGGSIVYVSSIGG 124
V+LK F + Y R K G I+ SS G
Sbjct: 143 AVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAG 182
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 69.5 bits (171), Expect = 1e-15
Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 35/136 (25%)
Query: 12 AVIT-ASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVCHVAN 70
+IT A+ G+G A A+ L +G +++S R+ + + + + +A+
Sbjct: 3 VLITGATG-GLGGAFARAL--KGHDLLLSGRRAGALAELAREVG------ARALPADLAD 53
Query: 71 TDERQKL---------------------FEHCSEVVWDKIFDVNLKSSFLLTQEVLPYMR 109
E + L + +++ +L L VL + R
Sbjct: 54 ELEAKALLEEAGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHL----LTAAFVLKHAR 109
Query: 110 KKKGGSIVYVSSIGGF 125
+KG V+ + +
Sbjct: 110 FQKGARAVFFGAYPRY 125
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 66.5 bits (163), Expect = 3e-14
Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 27/140 (19%)
Query: 10 KVAVITASTEGIGFAIAKRLSAEGASVVISSRKESN---------------VNKAVETLQ 54
+ A++T G+G A A L A G VV+ + V +AV Q
Sbjct: 3 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREGEDLIYVEGDVTREEDVRRAVARAQ 62
Query: 55 KEGHQNVSGVVCHVANTDERQKLF---EHCSEVVWDKIFDVNLKSSFLLTQEVLPYMRKK 111
+E V A +K+ + ++ +VNL +F + + MR+
Sbjct: 63 EEAPLF---AVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMREN 119
Query: 112 K------GGSIVYVSSIGGF 125
G IV +S+ F
Sbjct: 120 PPDAEGQRGVIVNTASVAAF 139
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 59.5 bits (144), Expect = 2e-11
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 7 LVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVC 66
+ GK AV+ A T +G A L+ EGA VV+ RK A +++ K V+
Sbjct: 117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF--KVNVTAA 174
Query: 67 HVANTDERQKLFEHCSEVV 85
A+ R + + V
Sbjct: 175 ETADDASRAEAVKGAHFVF 193
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 58.5 bits (142), Expect = 3e-11
Identities = 25/156 (16%), Positives = 48/156 (30%), Gaps = 45/156 (28%)
Query: 10 KVAVITASTEGIGFAIAKRLSAEGAS--VVISSRKESNVNKAVETLQKEGHQNVSGVVCH 67
V+T + GIG + ++L + ++ ++R + L+ V +
Sbjct: 4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATE----LKSIKDSRVHVLPLT 59
Query: 68 VANTDERQKLFEHCSEVV----------------------------WDKIFDVNLKSSFL 99
V E+V + DVN S L
Sbjct: 60 VTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVL 119
Query: 100 LTQEVLPYMRK-----------KKGGSIVYVSSIGG 124
LTQ++LP ++ +++ +SS G
Sbjct: 120 LTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLG 155
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 57.8 bits (140), Expect = 6e-11
Identities = 33/179 (18%), Positives = 50/179 (27%), Gaps = 50/179 (27%)
Query: 10 KVAVITASTEGIGFAIAKRL---SAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVC 66
+IT G+G + K L + + R K +E L K H N+ +
Sbjct: 22 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQ-AKELEDLAKN-HSNIHILEI 79
Query: 67 HVANTDERQKLFEHCSEVV----------------------------WDKIFDVNLKSSF 98
+ N D KL V N
Sbjct: 80 DLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPI 139
Query: 99 LLTQEVLPYMRK-----------KKGGSIVYVSSIGGFKQFKVSILILRPATPYQYKLS 146
+L + LP ++K +I+ +SSI G SI Y Y+ S
Sbjct: 140 MLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILG------SIQGNTDGGMYAYRTS 192
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 48.8 bits (117), Expect = 1e-07
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKE 56
+ VIT + G+G A+ L+ GA+V+++ R A T+ +
Sbjct: 13 SFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQ 63
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH
BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella
tularensis subsp} PDB: 2jjy_A*
Length = 280
Score = 46.1 bits (110), Expect = 7e-07
Identities = 34/156 (21%), Positives = 56/156 (35%), Gaps = 44/156 (28%)
Query: 7 LVGKVAVIT--ASTEGIGFAIAKRLSAEGASVVIS--SRKESNVNKAVETLQKEGHQNVS 62
L GK +IT S + I + IAK + EGA + + + + V K N +
Sbjct: 24 LAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEF------NPA 77
Query: 63 GVV-CHVANTDERQKLFEHCSEVVWDKI-------------------FDVNLKSSFLLTQ 102
V+ C V + E + LF + VWD + D + F +
Sbjct: 78 AVLPCDVISDQEIKDLFVELGK-VWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAH 136
Query: 103 EV------------LPYMRKKKGGSIVYVSSIGGFK 126
++ M K + S+V ++ IG K
Sbjct: 137 DISAYSFAALAKEGRSMM-KNRNASMVALTYIGAEK 171
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid
synthesis, rossmann-like fold, enoyl-ACP reductas
binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} PDB:
3oif_A* 2qio_A* 3oje_A 3ojf_A*
Length = 266
Score = 46.0 bits (110), Expect = 8e-07
Identities = 36/154 (23%), Positives = 57/154 (37%), Gaps = 39/154 (25%)
Query: 7 LVGKVAVIT--ASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGV 64
L G+ V+ A+ I + IA+ L GA ++ + E + K+V L +N S +
Sbjct: 5 LEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGER-LEKSVHELAGTLDRNDSII 63
Query: 65 V-CHVANTDERQKLFEHCSEVVWDKI-------------------FDVNLKSSFLLTQEV 104
+ C V N E + F E I + N + FLL +
Sbjct: 64 LPCDVTNDAEIETCFASIKE-QVGVIHGIAHCIAFANKEELVGEYLNTN-RDGFLLAHNI 121
Query: 105 ------------LPYMRKKKGGSIVYVSSIGGFK 126
P M +GGSIV ++ +GG
Sbjct: 122 SSYSLTAVVKAARPMM--TEGGSIVTLTYLGGEL 153
>4alk_A ENR, enoyl-[acyl-carrier-protein] reductase [NADPH];
oxidoreductase, short-chain dehydrogenase/reductase
superfam fatty acid biosynthesis; HET: NAP E9P GLU;
1.90A {Staphylococcus aureus} PDB: 4alj_A* 4ali_A*
4alm_A 4aln_A 3gr6_A* 3gns_A* 3gnt_A 4all_A*
Length = 282
Score = 45.7 bits (109), Expect = 1e-06
Identities = 36/153 (23%), Positives = 55/153 (35%), Gaps = 37/153 (24%)
Query: 7 LVGKVAVIT--ASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGV 64
L K VI A+ I F +AK L GA +V + RKE K +E L ++ +Q + +
Sbjct: 30 LENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKER-SRKELEKLLEQLNQPEAHL 88
Query: 65 V-CHVANTDERQKLFEHCSEVVWDKI-FDV---------NLKSSFL-------------- 99
V + +E FE + I +L+ F
Sbjct: 89 YQIDVQSDEEVINGFEQIGK-DVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDIS 147
Query: 100 ------LTQEVLPYMRKKKGGSIVYVSSIGGFK 126
+ E M +GGSIV + +GG
Sbjct: 148 SYSLTIVAHEAKKLM--PEGGSIVATTYLGGEF 178
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase,
oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia
coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A*
1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A*
1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Length = 265
Score = 45.2 bits (108), Expect = 2e-06
Identities = 26/157 (16%), Positives = 51/157 (32%), Gaps = 46/157 (29%)
Query: 7 LVGKVAVIT--ASTEGIGFAIAKRLSAEGASVVIS---SRKESNVNKAVETLQKEGHQNV 61
L GK ++T AS I + IA+ + EGA + + + + V + L
Sbjct: 7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL------GS 60
Query: 62 SGVV-CHVANTDERQKLFEHCSEVVWDKI-------------------FDVNLKSSFLLT 101
V+ C VA +F + VW K + + F +
Sbjct: 61 DIVLQCDVAEDASIDTMFAELGK-VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIA 119
Query: 102 QEV------------LPYMRKKKGGSIVYVSSIGGFK 126
++ + G +++ +S +G +
Sbjct: 120 HDISSYSFVAMAKACRSML--NPGSALLTLSYLGAER 154
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase,
INHA, enoyl acyl carrier reductase, pyrrolid
carboxamide; HET: NAD 566; 1.62A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A*
2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A*
2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A*
3fnh_A* 3oew_A* 2aqh_A* ...
Length = 269
Score = 44.5 bits (106), Expect = 2e-06
Identities = 24/146 (16%), Positives = 45/146 (30%), Gaps = 40/146 (27%)
Query: 7 LVGKVAVIT--ASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGV 64
L GK +++ + I F IA+ +GA +V++ + ++ + +
Sbjct: 5 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRL---RLIQRITDRLPAKAPLL 61
Query: 65 VCHVANTDERQKLFEHCSEVV--WDKI-------------------FDVNLKSSFLLTQE 103
V N + L +E + +K+ F +
Sbjct: 62 ELDVQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIH 121
Query: 104 V------------LPYMRKKKGGSIV 117
+ LP M GGSIV
Sbjct: 122 ISAYSYASMAKALLPIM--NPGGSIV 145
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 43.7 bits (103), Expect = 8e-06
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 6 RLVGKVAVIT-ASTEGIGFAIAKRLSAEGASVVI-SSR 41
K +IT A IG + + L GA VV+ +SR
Sbjct: 473 TFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSR 510
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid,
oxidoreductase, structural genomics; 1.90A {Burkholderia
pseudomallei 1710B}
Length = 271
Score = 43.0 bits (102), Expect = 8e-06
Identities = 28/157 (17%), Positives = 50/157 (31%), Gaps = 46/157 (29%)
Query: 7 LVGKVAVIT--ASTEGIGFAIAKRLSAEGASVVIS---SRKESNVNKAVETLQKEGHQNV 61
L GK ++T S I + IAK EGA + + R + + +
Sbjct: 12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEF------GS 65
Query: 62 SGVV-CHVANTDERQKLFEHCSEVVWDKI-------------------FDVNLKSSFLLT 101
V C VA+ + LF WD + D + +F +
Sbjct: 66 ELVFPCDVADDAQIDALFASLKT-HWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIA 124
Query: 102 QEV------------LPYMRKKKGGSIVYVSSIGGFK 126
++ LP + S++ +S +G +
Sbjct: 125 HDISAYSFPALAKAALPML--SDDASLLTLSYLGAER 159
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid
biosynthesis, oxidation reduction; 1.50A {Thermus
thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Length = 261
Score = 42.6 bits (101), Expect = 1e-05
Identities = 30/156 (19%), Positives = 53/156 (33%), Gaps = 45/156 (28%)
Query: 7 LVGKVAVIT--ASTEGIGFAIAKRLSAEGASVVIS---SRKESNVNKAVETLQKEGHQNV 61
L GK A++ + +GFAIA +L GA V +S R K E L
Sbjct: 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEAL------GG 59
Query: 62 SGVV-CHVANTDERQKLFEHCSEVVWDKI-FDV---------NLKSSFL----------- 99
+ + V +E LF E + + + V ++ ++
Sbjct: 60 ALLFRADVTQDEELDALFAGVKE-AFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLAL 118
Query: 100 ---------LTQEVLPYMRKKKGGSIVYVSSIGGFK 126
+ + P + ++GG IV ++ K
Sbjct: 119 EVSAYSLVAVARRAEPLL--REGGGIVTLTYYASEK 152
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid,
structural genomics, seattle structural genomics center
for infectious disease; 2.35A {Brucella melitensis} PDB:
4eit_A*
Length = 293
Score = 41.8 bits (99), Expect = 2e-05
Identities = 31/156 (19%), Positives = 49/156 (31%), Gaps = 45/156 (28%)
Query: 7 LVGKVAVIT--ASTEGIGFAIAKRLSAEGASVVIS---SRKESNVNKAVETLQKEGHQNV 61
L GK +I A+ I + IAK GA + + + V E L
Sbjct: 29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEEL------GA 82
Query: 62 SGVV-CHVANTDERQKLFEHCSEVVWDKI-FDV---------NLKSSFL----------- 99
C VA+ +FE + W K+ F V L ++
Sbjct: 83 FVAGHCDVADAASIDAVFETLEK-KWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTM 141
Query: 100 ---------LTQEVLPYMRKKKGGSIVYVSSIGGFK 126
+++ M GGSI+ ++ G K
Sbjct: 142 LISVYSLTAVSRRAEKLM--ADGGSILTLTYYGAEK 175
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial
target, type II fatty acid biosynthesis,
enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A
{Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Length = 275
Score = 41.8 bits (99), Expect = 2e-05
Identities = 30/156 (19%), Positives = 53/156 (33%), Gaps = 45/156 (28%)
Query: 7 LVGKVAVIT--ASTEGIGFAIAKRLSAEGASVVISS---RKESNVNKAVETLQKEGHQNV 61
L GK +I A+ + I + IA+ +GA++ + E V + L N
Sbjct: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQEL------NS 57
Query: 62 SGVV-CHVANTDERQKLFEHCSEVVWDKI-FDV---------NLKSSFL----------- 99
V V+ + + L+ + + F V L+ S L
Sbjct: 58 PYVYELDVSKEEHFKSLYNSVKK-DLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAM 116
Query: 100 ---------LTQEVLPYMRKKKGGSIVYVSSIGGFK 126
LT + P + G S++ +S +G K
Sbjct: 117 EISVYSLIELTNTLKPLL--NNGASVLTLSYLGSTK 150
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI,
UW, decode, eonyl-(acyl-carrier-PR reductase, NAD,
oxidoreductase; HET: NAD; 1.80A {Anaplasma
phagocytophilum} PDB: 3k2e_A*
Length = 296
Score = 41.9 bits (99), Expect = 2e-05
Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 45/156 (28%)
Query: 7 LVGKVAVIT--ASTEGIGFAIAKRLSAEGASVVIS---SRKESNVNKAVETLQKEGHQNV 61
+ GK VI A+ + + + IAK + A+GA V ++ + V+ E+L V
Sbjct: 28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESL------GV 81
Query: 62 SGVV-CHVANTDERQKLFEHCSEVVWDKI-FDV---------NLKSSFL----------- 99
V C V++ + +F+ +E W + F V LK ++
Sbjct: 82 KLTVPCDVSDAESVDNMFKVLAE-EWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSM 140
Query: 100 ---------LTQEVLPYMRKKKGGSIVYVSSIGGFK 126
+ + P M GGSI+ +S G K
Sbjct: 141 HISCYSFTYIASKAEPLM--TNGGSILTLSYYGAEK 174
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent
enoyl-ACP reductase, FABI, aquifex A VF5, structural
genomics, PSI; 2.00A {Aquifex aeolicus}
Length = 285
Score = 41.5 bits (98), Expect = 3e-05
Identities = 37/156 (23%), Positives = 58/156 (37%), Gaps = 44/156 (28%)
Query: 7 LVGKVAVIT--ASTEGIGFAIAKRLSAEGASVVISS---RKESNVNKAVETLQKEGHQNV 61
L GK A+IT A+ I + IAK EGA + + + E V + +
Sbjct: 19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGF------GS 72
Query: 62 SGVV-CHVANTDERQKLFEHCSEVVWDKI-FDV---------NLKSSFL----------- 99
VV C V+ ++ + L + E W + V K +
Sbjct: 73 DLVVKCDVSLDEDIKNLKKFLEE-NWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAM 131
Query: 100 ---------LTQEVLPYMRKKKGGSIVYVSSIGGFK 126
LT+E+LP M + + G+IV +S G K
Sbjct: 132 DISVYSLIALTRELLPLM-EGRNGAIVTLSYYGAEK 166
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 40.0 bits (94), Expect = 9e-05
Identities = 26/136 (19%), Positives = 43/136 (31%), Gaps = 29/136 (21%)
Query: 21 IGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVCHVANTDERQKLFEH 80
+G AI L V +S + +A E + V C +A+ L +
Sbjct: 14 VGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEEI----------VACDLADAQAVHDLVKD 63
Query: 81 CSEVV----------WDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVYVSSIG--GFKQF 128
C ++ W+ I N+ + R IV+ SS G+
Sbjct: 64 CDGIIHLGGVSVERPWNDILQANIIG----AYNLYEAARNLGKPRIVFASSNHTIGYYPR 119
Query: 129 KVSI---LILRPATPY 141
I + RP + Y
Sbjct: 120 TTRIDTEVPRRPDSLY 135
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 39.2 bits (92), Expect = 2e-04
Identities = 24/143 (16%), Positives = 44/143 (30%), Gaps = 26/143 (18%)
Query: 21 IGFAIAKRLSAEGASVVI----SSRKESNVNKAVETLQKEGHQNVSGVVCHVANTDERQK 76
IG + + L VV ++ + N+++ + ++ N + + N D+
Sbjct: 39 IGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNN 98
Query: 77 LFEHCSEVV--------------WDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVYVSS- 121
V+ N+ +L R K S Y +S
Sbjct: 99 ACAGVDYVLHQAALGSVPRSINDPITSNATNIDG----FLNMLIAARDAKVQSFTYAASS 154
Query: 122 --IGGFKQF-KVSILILRPATPY 141
G KV I +P +PY
Sbjct: 155 STYGDHPGLPKVEDTIGKPLSPY 177
>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu
P.falciparum; HET: NAD FT1; 1.96A {Plasmodium
falciparum} PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A*
3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A*
2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A*
1zxl_A* 2foi_A* ...
Length = 329
Score = 38.0 bits (88), Expect = 5e-04
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 9 GKVAVIT--ASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQN 60
+ I T G G+ IAK LS ++ N ++ + N
Sbjct: 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPV-YNIFMKNYKNGKFDN 54
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB:
1e5l_A* 1e5q_A
Length = 450
Score = 38.0 bits (87), Expect = 6e-04
Identities = 9/66 (13%), Positives = 19/66 (28%), Gaps = 5/66 (7%)
Query: 20 GIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVCHVANTDERQKLFE 79
+ L+ G V ++ R + K G Q+ + + V +
Sbjct: 13 FVTRPTLDVLTDSGIKVTVACRTLESAKKLS-----AGVQHSTPISLDVNDDAALDAEVA 67
Query: 80 HCSEVV 85
V+
Sbjct: 68 KHDLVI 73
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 37.6 bits (88), Expect = 7e-04
Identities = 13/119 (10%), Positives = 36/119 (30%), Gaps = 22/119 (18%)
Query: 21 IGFAIAKRLSAEGASVVI----SSRKESNVNKAVETLQKEGHQNVSGVVCHVANTDERQK 76
IG + ++L V+ S+ + N+++ + E + + + ++
Sbjct: 37 IGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQ 96
Query: 77 LFEHCSEVV--------------WDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVYVSS 121
+ + V+ N+ +L + + S Y +S
Sbjct: 97 VMKGVDHVLHQAALGSVPRSIVDPITTNATNITG----FLNILHAAKNAQVQSFTYAAS 151
>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P
reductase, oxidoreductase; 2.60A {Eimeria tenella}
Length = 319
Score = 36.7 bits (85), Expect = 0.001
Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 6/102 (5%)
Query: 7 LVGKVAVIT--ASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGV 64
L GK A + A + G G+AI K L A GA V++ + + +
Sbjct: 7 LRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPV--YSIFKKGLESSRFEQDSF 64
Query: 65 VCHVANTDERQKLFEHCSEVVWDKI--FDVNLKSSFLLTQEV 104
++ + E ++V+DKI D + + EV
Sbjct: 65 YAQEPSSKVAAEAAEKPVDLVFDKIYPLDAVFDTPQDVPPEV 106
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 36.2 bits (84), Expect = 0.002
Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 23/123 (18%)
Query: 10 KVAVITASTEG-IGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVCHV 68
K+ +I AS G +G A+ G V R + ++++ V
Sbjct: 6 KIVLIGAS--GFVGSALLNEALNRGFEVTAVVRHPEKIKIE--------NEHLKVKKADV 55
Query: 69 ANTDERQKLFEHCSEVV--------WDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVYVS 120
++ DE ++ + V+ I+D +K ++ ++K + V
Sbjct: 56 SSLDEVCEVCKGADAVISAFNPGWNNPDIYDETIKV----YLTIIDGVKKAGVNRFLMVG 111
Query: 121 SIG 123
G
Sbjct: 112 GAG 114
>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan,
enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A
{Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A*
1cwu_A*
Length = 297
Score = 36.2 bits (84), Expect = 0.002
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 7 LVGKVAVIT--ASTEGIGFAIAKRLSAEGASVVIS 39
L GK A I A G G+A+AK L+A GA +++
Sbjct: 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVG 40
>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan,
rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A
{Toxoplasma gondii} PDB: 2o50_A 3nj8_A*
Length = 315
Score = 36.3 bits (84), Expect = 0.002
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 7 LVGKVAVIT--ASTEGIGFAIAKRLSAEGASVVIS 39
L G+ A + A + G G+AIAK L++ GA V +
Sbjct: 7 LRGQTAFVAGVADSHGYGWAIAKHLASAGARVALG 41
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 35.8 bits (83), Expect = 0.002
Identities = 20/136 (14%), Positives = 42/136 (30%), Gaps = 29/136 (21%)
Query: 21 IGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVCHVANTDERQKLFEH 80
+G + +RL+ + ++ + N V C +A+ + +
Sbjct: 15 LGRVMRERLAPMAEILRLADLSPLD----------PAGPNEECVQCDLADANAVNAMVAG 64
Query: 81 CSEVV----------WDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVYVSSIG--GFKQF 128
C +V +++I N+ + R IV+ SS G+
Sbjct: 65 CDGIVHLGGISVEKPFEQILQGNIIG----LYNLYEAARAHGQPRIVFASSNHTIGYYPQ 120
Query: 129 KVSI---LILRPATPY 141
+ + RP Y
Sbjct: 121 TERLGPDVPARPDGLY 136
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 34.4 bits (78), Expect = 0.008
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 10 KVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVCHVA 69
+VA++ T +G +A RL+ G +V+ SR+E KA + + +
Sbjct: 2 RVALLGG-TGNLGKGLALRLATLGHEIVVGSRREE---KAEAKAAEYRRIAGDASITGMK 57
Query: 70 NTD 72
N D
Sbjct: 58 NED 60
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 34.0 bits (78), Expect = 0.010
Identities = 16/141 (11%), Positives = 47/141 (33%), Gaps = 13/141 (9%)
Query: 10 KVAVITASTEGIGFAIAKRL-SAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVCHV 68
V ++ A I + +L + + +R+ + K N ++ V
Sbjct: 25 NVLILGA-GGQIARHVINQLADKQTIKQTLFARQP-------AKIHKPYPTNSQIIMGDV 76
Query: 69 ANTDERQKLFEHCSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVYVSSIGGFKQF 128
N ++ + V ++ + + V+ M+ +++V S+G + +
Sbjct: 77 LNHAALKQAMQGQDIV----YANLTGEDLDIQANSVIAAMKACDVKRLIFVLSLGIYDEV 132
Query: 129 KVSILILRPATPYQYKLSYQQ 149
+ A + +++
Sbjct: 133 PGKFVEWNNAVIGEPLKPFRR 153
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens}
PDB: 2vq3_A*
Length = 215
Score = 33.4 bits (76), Expect = 0.017
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 8/35 (22%)
Query: 10 KVAVITASTEG---IGFAIAKRLSAEGASVVISSR 41
KV ++ G ++A RL G VV+ SR
Sbjct: 30 KVGIL-----GSGDFARSLATRLVGSGFKVVVGSR 59
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 33.8 bits (77), Expect = 0.019
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 4 ATRLVGKVAVITASTEG-IGFAIAKRLSAEGASVVISSRKES 44
K +IT + +G IG + + L GA VV+++ + S
Sbjct: 670 GVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFS 711
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 33.1 bits (75), Expect = 0.021
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 8/47 (17%)
Query: 10 KVAVITASTEG---IGFAIAKRLSAEGASVVISSRKESNVNKAVETL 53
K+AV+ G +G +A L+ G V I +R E
Sbjct: 21 KIAVL-----GTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPD 62
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 33.1 bits (76), Expect = 0.023
Identities = 22/139 (15%), Positives = 45/139 (32%), Gaps = 21/139 (15%)
Query: 10 KVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVCHV- 68
K+ ++ + T +G ++ K LS + +RK Q + NV V V
Sbjct: 2 KIFIVGS-TGRVGKSLLKSLSTTDYQIYAGARKVE---------QVPQYNNVKAVHFDVD 51
Query: 69 ANTDERQKLFEHCSEVVW------DKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVYVSSI 122
+E K ++ + V+L +++ K + + +S+I
Sbjct: 52 WTPEEMAKQLHGMDAIINVSGSGGKSLLKVDLYG----AVKLMQAAEKAEVKRFILLSTI 107
Query: 123 GGFKQFKVSILILRPATPY 141
+ K Y
Sbjct: 108 FSLQPEKWIGAGFDALKDY 126
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 32.7 bits (75), Expect = 0.032
Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 22/125 (17%)
Query: 10 KVAVITASTEG-IGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQ----NVSGV 64
K AV+ A+ G +G A+ + A G +V+ R S + + + L+ E + +G+
Sbjct: 15 KYAVLGAT--GLLGHHAARAIRAAGHDLVLIHRPSSQI-QRLAYLEPECRVAEMLDHAGL 71
Query: 65 VCHVANTDERQKLFEHCSEVV------WDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 118
+ D + + W + L T + + I+Y
Sbjct: 72 ERALRGLDG---VI-FSAGYYPSRPRRWQEEVASALGQ----TNPFYAACLQARVPRILY 123
Query: 119 VSSIG 123
V S
Sbjct: 124 VGSAY 128
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 33.0 bits (75), Expect = 0.032
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 5 TRLVGKVAVIT-ASTEGIGFAIAKRLSAEGASVVISSRKES 44
GK A++T A IG + + L + GA V++++ + S
Sbjct: 648 LTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFS 688
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for
structural genomics; HET: MSE; 1.50A {Streptococcus
agalactiae}
Length = 451
Score = 32.6 bits (75), Expect = 0.038
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 1 MFKATRLVGK-VAVITASTEGI-GFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEG 57
M T K V V+ G A A+ L+ GA V ++ K + N ++L +EG
Sbjct: 1 MKTITTFENKKVLVLGL---ARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEG 56
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 32.3 bits (73), Expect = 0.040
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 8/35 (22%)
Query: 10 KVAVITASTEG---IGFAIAKRLSAEGASVVISSR 41
V + G G ++ ++ G SVV SR
Sbjct: 21 VVCIF-----GTGDFGKSLGLKMLQCGYSVVFGSR 50
>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
center for structural genomics of infec diseases,
csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Length = 461
Score = 31.8 bits (73), Expect = 0.060
Identities = 8/52 (15%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 21 IGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVCHVANTD 72
+G +A+ L E + I + + + + ++ V H ++ D
Sbjct: 14 VGGTLAENLVGENNDITIVDKDGDRLRELQDKY------DLRVVNGHASHPD 59
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann,
PSI, M structural genomics; 1.70A {Archaeoglobus
fulgidus}
Length = 141
Score = 30.7 bits (70), Expect = 0.087
Identities = 8/67 (11%), Positives = 21/67 (31%), Gaps = 14/67 (20%)
Query: 21 IGFAIAKRLSAEGASVVISSRKESNVNKAV--------------ETLQKEGHQNVSGVVC 66
G + + L+A G V+ + + + + + VS V+
Sbjct: 17 AGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLI 76
Query: 67 HVANTDE 73
++ +
Sbjct: 77 TGSDDEF 83
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 31.1 bits (71), Expect = 0.11
Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 30/118 (25%)
Query: 21 IGFAIAKRLSAEGASVVI----SSRKESNVNKAVETLQKEGHQNVSGVVCHVANTDERQK 76
IG IA+ L G VV ++ + ++ + H N++ V +A+ +
Sbjct: 33 IGSHIAELLLERGDKVVGIDNFATGRREHL---------KDHPNLTFVEGSIADHALVNQ 83
Query: 77 LFEHCS-----------EVVWDKIFD--VNLKSSFLLTQEVLPYMRKKKGGSIVYVSS 121
L + D D N V+ +K G VY +
Sbjct: 84 LIGDLQPDAVVHTAASYKDPDDWYNDTLTNCVG----GSNVVQAAKKNNVGRFVYFQT 137
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 30.8 bits (70), Expect = 0.11
Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 17/109 (15%)
Query: 21 IGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVCHVANTDERQKLFEH 80
+G +A+RL+A+G V R + V ++ V D +
Sbjct: 14 LGLELARRLTAQGHEVTGLRRSAQPM-----------PAGVQTLIADVTRPDTLASIVHL 62
Query: 81 CSEVVW-----DKIFDVNLKSSFL-LTQEVLPYMRKKKGGSIVYVSSIG 123
E++ + D + + S++ + L + + +VSS G
Sbjct: 63 RPEILVYCVAASEYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTG 111
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.12
Identities = 16/127 (12%), Positives = 37/127 (29%), Gaps = 37/127 (29%)
Query: 40 SRKE--SNVNKAVETLQKEGHQNVSGVVCH-------------VANTDERQKLFEHCSEV 84
SR + + +A+ L+ V+ V + + Q + ++
Sbjct: 132 SRLQPYLKLRQALLELRPAK-----NVLIDGVLGSGKTWVALDVCLSYKVQCKMD--FKI 184
Query: 85 VWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIV---------------YVSSIGGFKQFK 129
W + + N + L + L Y S + + K ++
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 130 VSILILR 136
+L+L
Sbjct: 245 NCLLVLL 251
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 30.8 bits (70), Expect = 0.12
Identities = 20/124 (16%), Positives = 38/124 (30%), Gaps = 23/124 (18%)
Query: 10 KVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVCHVA 69
+V V+ A + + L +G V R E E + + +
Sbjct: 23 RVLVVGA-NGKVARYLLSELKNKGHEPVAMVRNEEQG--------PELRERGASDIVVAN 73
Query: 70 NTDERQKLFEHCSEVVW----------DKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVYV 119
++ F VV+ DK ++L + + K+ + V
Sbjct: 74 LEEDFSHAFASIDAVVFAAGSGPHTGADKTILIDLWG----AIKTIQEAEKRGIKRFIMV 129
Query: 120 SSIG 123
SS+G
Sbjct: 130 SSVG 133
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain,
NAD, RCK domain, potassium transport, potassium
channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus
jannaschii} SCOP: c.2.1.9
Length = 140
Score = 30.2 bits (69), Expect = 0.12
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 21 IGFAIAKRLSAEGASVVISSRKESNVNKAVETL 53
+G+ +AK LS +G +V+ + KA +
Sbjct: 15 VGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI 47
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 30.9 bits (69), Expect = 0.15
Identities = 26/167 (15%), Positives = 48/167 (28%), Gaps = 34/167 (20%)
Query: 10 KVAVITASTEGIGFAIAKRLSAEGAS-----VVISSRKESNVNKAVETLQKEGHQNVSGV 64
VA+I T IG ++A+ L V +R+ ++ V
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTR--------PAWHEDNPINYV 53
Query: 65 VCHVANTDERQKLFEHCSEVV------------WDKIFDVNLKSSFLLTQEVLPYMRKKK 112
C +++ D+ Q ++V + + N K + V+P K
Sbjct: 54 QCDISDPDDSQAKLSPLTDVTHVFYVTWANRSTEQENCEANSKMFRNVLDAVIPNCPNLK 113
Query: 113 -----GGSIVYVSSIGGFKQFKVSILILR---PATPYQYKLSYQQEW 151
G Y+ + + + P Y Y E
Sbjct: 114 HISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRLKYMN-FYYDLED 159
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F
structural genomics, JCSG, protein structure
initiative; 2.60A {Corynebacterium glutamicum atcc
13032}
Length = 341
Score = 30.4 bits (69), Expect = 0.22
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 4 ATRLVGKVAVITASTEG---IGFAIAKRLSAEGASVVISSRKESNVNKAVE 51
+ V ++ G IG ++ + L A SV +R S AV+
Sbjct: 4 TKDISRPVCIL-----GLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVD 49
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 29.5 bits (66), Expect = 0.36
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 10 KVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVE 51
VAV+ +G ++A++ +A GA V + +R+ + + E
Sbjct: 157 NVAVL--GLGRVGMSVARKFAALGAKVKVGARESDLLARIAE 196
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 29.6 bits (67), Expect = 0.36
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 9 GKVAVITASTEGIGFAIAKRLSAEGASVVI 38
+V ++ A T + ++A++L+ G V I
Sbjct: 529 KRVVILNADTYFMAPSLAEKLATAGHEVTI 558
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 29.4 bits (67), Expect = 0.37
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 21 IGFAIAKRLSAEGASVVISSRKESNVN---KAVETLQKEGHQNVSGVVC-HVANTDERQK 76
IG A+AKR A G VV +R + ++E L KE + VV H T E +
Sbjct: 155 IGQAVAKRALAFGMRVVYHARTPKPLPYPFLSLEELLKE-----ADVVSLHTPLTPETHR 209
Query: 77 LF 78
L
Sbjct: 210 LL 211
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 28.8 bits (65), Expect = 0.38
Identities = 13/67 (19%), Positives = 19/67 (28%), Gaps = 14/67 (20%)
Query: 21 IGFAIAKRLSAEGASVVISSRKESNVNKAV--------------ETLQKEGHQNVSGVVC 66
G +I K L G V+ E VN L G +N V+
Sbjct: 17 FGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIV 76
Query: 67 HVANTDE 73
+ +
Sbjct: 77 AIGANIQ 83
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A
3a97_A 3adp_A* 3f3s_A*
Length = 319
Score = 29.6 bits (67), Expect = 0.39
Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 8 VGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKE 56
G V ++ + +G + A ++ G V + + + A+E ++KE
Sbjct: 6 AGDVLIVGSGL--VGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKE 52
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter
pomeroyi DSS, structural genomics, PSI-2, protein
structure initiative; HET: MSE; 1.66A {Ruegeria
pomeroyi dss-3}
Length = 286
Score = 29.1 bits (65), Expect = 0.46
Identities = 6/41 (14%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 21 IGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNV 61
+++ L+ +G ++ +SR +E ++ G + +
Sbjct: 16 TARVLSRALAPQGWRIIGTSRNPDQ----MEAIRASGAEPL 52
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 28.8 bits (65), Expect = 0.54
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 9/57 (15%)
Query: 90 FDVNLKSSFLLTQEVLPYMRKKKGGSIVYVSSIGGF-----KQFKVSILILRPATPY 141
+ VN+ T +L ++ + +V S+IG F K SI I RP T +
Sbjct: 85 YKVNMNG----TYNILEAAKQHRVEKVVIPSTIGVFGPETPKNKVPSITITRPRTMF 137
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: AMP; 1.50A {Thermotoga
maritima} PDB: 3l4b_A*
Length = 155
Score = 28.3 bits (64), Expect = 0.65
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 21 IGFAIAKRLSAEGASVVISSRKESNVNKAVETL 53
+G IA S+ G SVV+ + E ++
Sbjct: 30 LGSLIANLASSSGHSVVVVDKNEYAFHRLNSEF 62
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 28.8 bits (65), Expect = 0.68
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 9 GKVAVITASTEGIGFAIAKRLSAEGASVVISSR 41
KV V +G +A+ L+ +G V I +
Sbjct: 524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTP 556
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 28.6 bits (65), Expect = 0.70
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 22 GFAIAKRLSAEGASVVISSRKESNVNKAVE 51
A+ K+L+ EGA +V++ ++ V+ AV
Sbjct: 185 AKALCKKLNTEGAKLVVTDVNKAAVSAAVA 214
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 28.7 bits (65), Expect = 0.79
Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 23/110 (20%)
Query: 21 IGFAIAKRLSAEGASVVI----SSRKESNVNKAVET--LQKEGHQNVSGV--VCHVA-NT 71
+G + + + +G + +I K N + + ++ ++ V V H+A
Sbjct: 14 LGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYTLEDLINQLNDVDAVVHLAATR 73
Query: 72 DERQKLFEHCSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVYVSS 121
+ K+ E F N TQ + + +IVY S+
Sbjct: 74 GSQGKISE----------FHDNEIL----TQNLYDACYENNISNIVYAST 109
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 28.7 bits (65), Expect = 0.83
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 22 GFAIAKRLSAEGASVVISSRKESNVNKAVE 51
G ++A + GA ++++ V AV
Sbjct: 187 GGSLASLAAEAGAQLLVADTDTERVAHAVA 216
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 28.4 bits (63), Expect = 0.85
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 9 GKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVE 51
V TA+ +G + + +G +V RK+ +
Sbjct: 172 HSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLKA 214
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA
modifying enzyme, topological knot; 1.85A {Aquifex
aeolicus}
Length = 211
Score = 28.0 bits (63), Expect = 0.99
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 12 AVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQ 59
+ EG I + ++ G+ + K N + + + G Q
Sbjct: 53 YLYYYHAEGKKAKINEGITQ-GSHKWVFIEKVDNPVQKLLEFKNRGFQ 99
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.1 bits (62), Expect = 1.0
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 25/63 (39%)
Query: 39 SSRKESNVNKAVETLQ----KEGHQNV-----SG-VVCHVANTDERQKLFEHCSEVVWDK 88
+ R+ N+N L K + G VVC C V+ DK
Sbjct: 11 AGRRGPNLN---IVLTCPECKVYPPKIVERFSEGDVVC------------ALCGLVLSDK 55
Query: 89 IFD 91
+ D
Sbjct: 56 LVD 58
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 28.0 bits (63), Expect = 1.2
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 21 IGFAIAKRLSAEGASVVISSRKE 43
IG A+A+R A + SR +
Sbjct: 175 IGLAVAERAEAFDCPISYFSRSK 197
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics,
PSI, protein structure initiative, NYSG oxidoreductase;
2.20A {Escherichia coli}
Length = 483
Score = 28.1 bits (63), Expect = 1.2
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 8 VGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQK 55
V VAVI + T G G IA+ ++ G V++ + +A++ +
Sbjct: 5 VQTVAVIGSGTMGAG--IAEVAASHGHQVLLYDISAEALTRAIDGIHA 50
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 28.0 bits (63), Expect = 1.2
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 21 IGFAIAKRLSAEGASVVISSRKE 43
IG A+A R A G SV +R
Sbjct: 182 IGRALASRAEAFGMSVRYWNRST 204
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1,
SNR135D, NESG, structural genomics, PSI-2; 2.40A
{Synechococcus elongatus pcc 6301}
Length = 161
Score = 27.4 bits (61), Expect = 1.3
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 10 KVAVITAS----TEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGH 58
V + S ++ + AI + L G +V + + + + +E +
Sbjct: 2 SVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARG 54
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 27.9 bits (62), Expect = 1.5
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 10 KVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVCHVA 69
++ +I A+ IG +AK G + R+ + + E Q SG
Sbjct: 6 RILLIGATGY-IGRHVAKASLDLGHPTFLLVRESTA-SSNSEKAQLLESFKASGANIVHG 63
Query: 70 NTDERQKLFEHCSEV 84
+ D+ L E V
Sbjct: 64 SIDDHASLVEAVKNV 78
>1jye_A Lactose operon repressor; gene regulation, protein stability,
protein DNA-binding, transcription; 1.70A {Escherichia
coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A
3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A*
1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A
1lqc_A 1lcc_A* ...
Length = 349
Score = 27.1 bits (61), Expect = 2.0
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 3 KATRLVGKVAVITASTEGIGFA-----IAKRLSAEGASVVISSRKESNVNKAVETLQKEG 57
K + L+G V T+S + I R GASVV+S + S V +
Sbjct: 59 KQSLLIG---VATSSLALHAPSQIVAAILSRADQLGASVVVSMVERSGVEACKTAVHNLL 115
Query: 58 HQNVSGVV 65
Q VSG++
Sbjct: 116 AQRVSGLI 123
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 27.2 bits (60), Expect = 2.1
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 10 KVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVN----KAVETLQKEG 57
+V ++ T IG I + G + R E N + + ++ G
Sbjct: 6 RVLIVGG-TGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLG 56
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET:
PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB:
1u7w_A* 1u7u_A* 1u80_A*
Length = 226
Score = 27.1 bits (61), Expect = 2.1
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 16/47 (34%)
Query: 7 LVGKVAVITA----------------STEGIGFAIAKRLSAEGASVV 37
L +ITA S+ +GFAIA + GA+V
Sbjct: 6 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVT 52
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 27.3 bits (61), Expect = 2.4
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 13 VITASTEG-IGFAIAKRLSAEGASVVISSRKESNVNK 48
IT S G +G A+ +L G V+ RKE K
Sbjct: 151 AITGSR-GLVGRALTAQLQTGGHEVIQLVRKEPKPGK 186
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella
pertussis}
Length = 369
Score = 27.1 bits (61), Expect = 2.4
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 11 VAVITASTEGI-GFAIAKRLSAEGASVVI 38
VI A G+ G AIA+ L+A G V++
Sbjct: 7 CIVIGA---GVVGLAIARALAAGGHEVLV 32
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 26.9 bits (59), Expect = 2.7
Identities = 6/43 (13%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 10 KVAVITASTEG-IGFAIAKRLSAEGASVVISSRKESNVNKAVE 51
VA++ A G +G I +++ + ++
Sbjct: 13 TVAILGAG--GKMGARITRKIHDSAHHLAAIEIAPEGRDRLQG 53
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 26.5 bits (58), Expect = 3.3
Identities = 16/120 (13%), Positives = 30/120 (25%), Gaps = 15/120 (12%)
Query: 10 KVAVITASTEG-IGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVCHV 68
K+AV+ A+ G G AI G V+ R +
Sbjct: 2 KIAVLGAT--GRAGSAIVAEARRRGHEVLAVVRDPQKA---------ADRLGATVATLVK 50
Query: 69 ANTDERQKLFEHCSEVVWDKIFDVNLKSSFLL---TQEVLPYMRKKKGGSIVYVSSIGGF 125
+ + VV +L ++ +R ++ + S
Sbjct: 51 EPLVLTEADLDSVDAVVDALSVPWGSGRGYLHLDFATHLVSLLRNSDTLAVFILGSASLA 110
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 26.9 bits (58), Expect = 3.3
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 10 KVAVITASTEGI-GFAIAKRLSAEGASVVI 38
+A+I GI G + A+ L+A G V +
Sbjct: 4 PIAIIGT---GIAGLSAAQALTAAGHQVHL 30
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 26.4 bits (59), Expect = 3.7
Identities = 12/68 (17%), Positives = 19/68 (27%), Gaps = 15/68 (22%)
Query: 21 IGFAIAKRLSAEGASVVISSRKESNVNKA---------VETLQKEGHQNVSGVVC-HVAN 70
IG A+A RL GA++ K + L S + +
Sbjct: 156 IGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFAS-----SDFILLALPL 210
Query: 71 TDERQKLF 78
+ L
Sbjct: 211 NADTLHLV 218
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA
crystallography structure, oxidoreductase; HET: OMT
NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Length = 279
Score = 26.4 bits (59), Expect = 3.8
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 10 KVAVITASTEG---IGFAIAKRLSAEGASVVISSRKESNVNKAVE 51
K+ V+ G IG ++A L G ++ SR++S KAVE
Sbjct: 2 KIGVV-----GLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE 41
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A
{Mycobacterium gastri}
Length = 207
Score = 26.1 bits (57), Expect = 4.0
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 3 KATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSR---KESNVNKAVETLQKE 56
K V + G+ A + GA V ++ ++ A + L+
Sbjct: 149 GLLAAGEKARVPFSVAGGVKVATIPAVQKAGAEVAVAGGAIYGAADPAAAAKELRAA 205
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 26.8 bits (59), Expect = 4.3
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 13 VITASTEGIGFAIAKRLSAEGAS-VVISSRKESN---VNKAVETLQKEGHQNVSGVVCHV 68
VIT G G +A+ L GA +V++SR + V +++G Q V +
Sbjct: 1888 VITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQ-VLVSTSNA 1946
Query: 69 ANTDERQKLFE 79
++ D + L
Sbjct: 1947 SSLDGARSLIT 1957
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 26.4 bits (59), Expect = 4.3
Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 14/67 (20%)
Query: 21 IGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSG---------VVCHVANT 71
IG AIA R G ++ +R + L++ + + +
Sbjct: 184 IGRAIATRARGFGLAIHYHNR-----TRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGR 238
Query: 72 DERQKLF 78
E +
Sbjct: 239 PELKGFL 245
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 4.3
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 11/50 (22%)
Query: 2 FKATRLV----GKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVN 47
FKAT ++ G + G+G + G V+++ + N +
Sbjct: 496 FKATHILDFGPGGAS-------GLGVLTHRNKDGTGVRVIVAGTLDINPD 538
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 26.5 bits (59), Expect = 4.4
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 5/81 (6%)
Query: 2 FKATRLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNV 61
+ L G+ +I T IG ++A + SA G V+ + + ET+ +
Sbjct: 130 MTTSTLTGQQLLI-YGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETVAFTATADA 188
Query: 62 SG----VVCHVANTDERQKLF 78
+V + T LF
Sbjct: 189 LATANFIVNALPLTPTTHHLF 209
>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein,
protein binding; 2.20A {Homo sapiens}
Length = 259
Score = 26.3 bits (58), Expect = 4.6
Identities = 7/49 (14%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 20 GIGFAIAKRLSAEGASVVI----SSRKESNVNKAVETLQKEGHQNVSGV 64
G + + L+ V++ + ++ + K Q VS +
Sbjct: 99 AQGISCGRHLANHDVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSL 147
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold,
oxidoreductase; 2.20A {Caenorhabditis elegans}
Length = 460
Score = 26.5 bits (59), Expect = 4.8
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 6 RLVGKVAVITASTEGIGFAIAKRLSAEGASVVISSRKESNVNKAVETL 53
V VA+I T G +A G + R E + +E +
Sbjct: 52 YDVNSVAIIGGGTMGKA--MAICFGLAGIETFLVVRNEQRCKQELEVM 97
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 26.4 bits (59), Expect = 4.8
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 21 IGFAIAKRLSAEGASVVI----SSRKESNVNKAVE 51
IG + +L G VV+ SS + VN + E
Sbjct: 12 IGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSAE 46
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair,
hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A
2zxp_A 1ir6_A
Length = 666
Score = 26.1 bits (58), Expect = 5.1
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
Query: 3 KATRLVG-----KVAVITASTEGIGFAIAKRLSAEG 33
A+ VG + T + F IA R++A
Sbjct: 241 PASSWVGLRLLAEAVGYTGKAVEVAFRIAPRINAAS 276
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 26.0 bits (58), Expect = 5.5
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 10/59 (16%)
Query: 21 IGFAIAKRLSAEGASVVI----SSRKESNVNKAVETLQKEG----HQNVSGV--VCHVA 69
IG +A+ L A G V + + L+K +++S V V H+A
Sbjct: 19 IGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLSDVRLVYHLA 77
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein,
protein binding; 2.80A {Homo sapiens}
Length = 306
Score = 26.0 bits (57), Expect = 6.1
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 4/47 (8%)
Query: 20 GIGFAIAKRLSAEGASVVI----SSRKESNVNKAVETLQKEGHQNVS 62
G + + L+ V++ + ++ + K Q VS
Sbjct: 146 AQGISCGRHLANHDVQVILFLPNFVKMLESITNELSLFSKTQGQQVS 192
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 26.0 bits (58), Expect = 6.2
Identities = 16/67 (23%), Positives = 21/67 (31%), Gaps = 14/67 (20%)
Query: 21 IGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSG---------VVCHVANT 71
IG AIAKR ++ SR E ++ + VV V T
Sbjct: 161 IGQAIAKRAKGFNMRILYYSRTRKE-----EVERELNAEFKPLEDLLRESDFVVLAVPLT 215
Query: 72 DERQKLF 78
E L
Sbjct: 216 RETYHLI 222
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 26.0 bits (57), Expect = 6.2
Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 23/103 (22%)
Query: 21 IGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVCHVA--NTDERQKLF 78
+G + L++ + +++ + L K + + H+A N E K F
Sbjct: 12 VGKNLKADLTSTTDHHIFEVHRQTKEEELESALLK------ADFIVHLAGVNRPEHDKEF 65
Query: 79 EHCSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVYVSS 121
N VL + + + +SS
Sbjct: 66 -----------SLGN----VSYLDHVLDILTRNTKKPAILLSS 93
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 25.6 bits (57), Expect = 6.5
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 21 IGFAIAKRLSAEGASVVI 38
+ +A+ + + VVI
Sbjct: 11 TAYYLARSMLSRKYGVVI 28
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural
genomics, seattle structural genomics center for
infectious disease, ssgcid; HET: B3P; 2.25A
{Mycobacterium marinum} PDB: 3tcr_A
Length = 185
Score = 25.3 bits (56), Expect = 7.5
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 7/42 (16%)
Query: 3 KATRLVGKVAVITASTEGI-------GFAIAKRLSAEGASVV 37
A +VG+ V+ G + + L+ G V
Sbjct: 25 GAELVVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVD 66
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein,
structural genomics, PSI-2, protein STRU initiative,
northeast structural genomics consortium; 2.30A {Nostoc
SP} PDB: 2klb_A
Length = 159
Score = 25.2 bits (55), Expect = 8.8
Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 10 KVAVITAS----TEGIGFAIAKRLSAEGASV-VISSRKESNVNKAVETLQKEGH 58
+ V S ++ + AI ++ G V V+ ++ + E + +
Sbjct: 6 SIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTG 59
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain
(ABD), F-actin- crosslinking, structural genomics; 2.40A
{Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Length = 506
Score = 25.4 bits (55), Expect = 9.0
Identities = 10/59 (16%), Positives = 20/59 (33%)
Query: 42 KESNVNKAVETLQKEGHQNVSGVVCHVANTDERQKLFEHCSEVVWDKIFDVNLKSSFLL 100
+ N + + + G V+ +A L + + D+NLK + L
Sbjct: 77 RNENHTLCLNSAKAVGCSVVNIGTQDLAEGRPHLVLGLISQLIKIQLLADLNLKKTPQL 135
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin C,
SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 25.4 bits (56), Expect = 9.1
Identities = 19/119 (15%), Positives = 40/119 (33%), Gaps = 32/119 (26%)
Query: 21 IGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQNVSGVVCHVANTDERQKLFEH 80
I IA+RL EG V+ A + + E +++ + ++ E+
Sbjct: 41 IASHIARRLKHEGHYVI-----------ASDWKKNE---HMTEDMFCDEFHLVDLRVMEN 86
Query: 81 CSEVVW--DKIF---------------DVN-LKSSFLLTQEVLPYMRKKKGGSIVYVSS 121
C +V D +F + ++ +++ ++ R Y SS
Sbjct: 87 CLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASS 145
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei}
PDB: 3f5m_A*
Length = 487
Score = 25.4 bits (56), Expect = 9.1
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 39 SSRKESNVNKAVETLQKEGHQNVSGVVC 66
SSR + + V+TL++ G V+ +
Sbjct: 171 SSRGPQDPKEMVDTLERLG---VNILFT 195
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport,
flavoprotein, FMN, transport; HET: FMN; 2.00A
{Desulfovibrio desulfuricans} PDB: 3f6s_A* 3f90_A*
3kap_A* 3kaq_A*
Length = 148
Score = 24.9 bits (55), Expect = 10.0
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 10 KVAVITAS----TEGIGFAIAKRLSAEGASVVISS 40
KV ++ S TE I + + ++A G V + +
Sbjct: 3 KVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLN 37
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.131 0.371
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,109,153
Number of extensions: 115355
Number of successful extensions: 1001
Number of sequences better than 10.0: 1
Number of HSP's gapped: 800
Number of HSP's successfully gapped: 324
Length of query: 151
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 66
Effective length of database: 4,328,508
Effective search space: 285681528
Effective search space used: 285681528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.0 bits)