BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10252
(85 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LX9|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LX9|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXA|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXA|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXB|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXB|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXC|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXC|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
Length = 404
Score = 119 bits (297), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 64/85 (75%)
Query: 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
MGWL WERF CN DC+ +P++CISE+LF MA+L+VSEG+ GYEY+ IDDCW+ R
Sbjct: 11 MGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMAPQRD 70
Query: 61 FNGRLQADAKRFPRGIADLSNYVST 85
GRLQAD +RFP GI L+NYV +
Sbjct: 71 SEGRLQADPQRFPHGIRQLANYVHS 95
>pdb|3HG3|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 2.
Substrate Bound
pdb|3HG3|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 2.
Substrate Bound
pdb|3TV8|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3TV8|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
Length = 404
Score = 119 bits (297), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 64/85 (75%)
Query: 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
MGWL WERF CN DC+ +P++CISE+LF MA+L+VSEG+ GYEY+ IDDCW+ R
Sbjct: 11 MGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMAPQRD 70
Query: 61 FNGRLQADAKRFPRGIADLSNYVST 85
GRLQAD +RFP GI L+NYV +
Sbjct: 71 SEGRLQADPQRFPHGIRQLANYVHS 95
>pdb|1R46|A Chain A, Structure Of Human Alpha-galactosidase
pdb|1R46|B Chain B, Structure Of Human Alpha-galactosidase
pdb|1R47|A Chain A, Structure Of Human Alpha-Galactosidase
pdb|1R47|B Chain B, Structure Of Human Alpha-Galactosidase
pdb|3GXN|A Chain A, Crystal Structure Of Apo Alpha-Galactosidase A At Ph 4.5
pdb|3GXN|B Chain B, Crystal Structure Of Apo Alpha-Galactosidase A At Ph 4.5
pdb|3GXP|A Chain A, Crystal Structure Of Acid-alpha-galactosidase A
Complexed With Galactose At Ph 4.5
pdb|3GXP|B Chain B, Crystal Structure Of Acid-alpha-galactosidase A
Complexed With Galactose At Ph 4.5
pdb|3GXT|A Chain A, Crystal Structure Of Alpha-Galactosidase A At Ph 4.5
Complexed With 1- Deoxygalactonijirimycin
pdb|3GXT|B Chain B, Crystal Structure Of Alpha-Galactosidase A At Ph 4.5
Complexed With 1- Deoxygalactonijirimycin
pdb|3HG2|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 1. Empty
Active Site
pdb|3HG2|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 1. Empty
Active Site
pdb|3HG4|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 3.
Covalent Intermediate
pdb|3HG4|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 3.
Covalent Intermediate
pdb|3HG5|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 4. Product
Bound
pdb|3HG5|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 4. Product
Bound
pdb|3S5Y|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Y|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Z|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Z|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
Length = 398
Score = 119 bits (297), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 64/85 (75%)
Query: 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
MGWL WERF CN DC+ +P++CISE+LF MA+L+VSEG+ GYEY+ IDDCW+ R
Sbjct: 11 MGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMAPQRD 70
Query: 61 FNGRLQADAKRFPRGIADLSNYVST 85
GRLQAD +RFP GI L+NYV +
Sbjct: 71 SEGRLQADPQRFPHGIRQLANYVHS 95
>pdb|1KTB|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
pdb|1KTC|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
Length = 405
Score = 115 bits (288), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 60/83 (72%)
Query: 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
MGWLAWERFRCN +C+ DP CISE LF MAD + +G+ +GY+YINIDDCW K R
Sbjct: 11 MGWLAWERFRCNVNCREDPRQCISEMLFMEMADRIAEDGWRELGYKYINIDDCWAAKQRD 70
Query: 61 FNGRLQADAKRFPRGIADLSNYV 83
GRL D +RFPRGI L++YV
Sbjct: 71 AEGRLVPDPERFPRGIKALADYV 93
>pdb|3H53|A Chain A, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase
pdb|3H53|B Chain B, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase
pdb|3H54|A Chain A, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase,Complex With Galnac
pdb|3H54|B Chain B, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase,Complex With Galnac
pdb|3H55|A Chain A, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase, Complex With Galactose
pdb|3H55|B Chain B, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase, Complex With Galactose
pdb|3IGU|A Chain A, Crystal Structure Of Human
Alpha-n-acetylgalactosaminidase, Covalent Intermediate
pdb|3IGU|B Chain B, Crystal Structure Of Human
Alpha-n-acetylgalactosaminidase, Covalent Intermediate
pdb|4DO4|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO4|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO5|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO5|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO6|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO6|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
Length = 400
Score = 110 bits (274), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 62/85 (72%), Gaps = 1/85 (1%)
Query: 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
MGWLAWERFRCN +C DP+NCISE+LF MAD + +G+ +GY Y+NIDDCW+ R
Sbjct: 11 MGWLAWERFRCNINCDEDPKNCISEQLFMEMADRMAQDGWRDMGYTYLNIDDCWIGG-RD 69
Query: 61 FNGRLQADAKRFPRGIADLSNYVST 85
+GRL D KRFP GI L++YV +
Sbjct: 70 ASGRLMPDPKRFPHGIPFLADYVHS 94
>pdb|1UAS|A Chain A, Crystal Structure Of Rice Alpha-Galactosidase
Length = 362
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 10/83 (12%)
Query: 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
MGW +W F C I+E++ R AD +V+ G A +GY+Y+NIDDCW + +R
Sbjct: 11 MGWNSWNHFYCG----------INEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSRD 60
Query: 61 FNGRLQADAKRFPRGIADLSNYV 83
G + + FP GI L++YV
Sbjct: 61 SQGNFVPNRQTFPSGIKALADYV 83
>pdb|1SZN|A Chain A, The Structure Of Alpha-Galactosidase
pdb|1T0O|A Chain A, The Structure Of Alpha-Galactosidase From Trichoderma
Reesei Complexed With Beta-D-Galactose
Length = 417
Score = 61.6 bits (148), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
+GW +W + C+ D E F + A+L+VS G GY Y+NIDDCW K
Sbjct: 14 LGWNSWNAYHCDID----------ESKFLSAAELIVSSGLLDAGYNYVNIDDCWSMKDGR 63
Query: 61 FNGRLQADAKRFPRGIADLSNYV 83
+G + +A RFP GI L+ V
Sbjct: 64 VDGHIAPNATRFPDGIDGLAKKV 86
>pdb|3A5V|A Chain A, Crystal Structure Of Alpha-Galactosidase I From
Mortierella Vinacea
Length = 397
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
MGW W ++ CN D E+L A + S G +GY Y+ IDDCW R
Sbjct: 11 MGWNTWNKYGCNVD----------EQLILDAAKAIASSGLKDLGYNYVIIDDCWQKNERE 60
Query: 61 FNGRLQADAKRFPRGIADL 79
+ L AD +FPRGI L
Sbjct: 61 SSKTLLADPTKFPRGIKPL 79
>pdb|3LRK|A Chain A, Structure Of Alfa-Galactosidase (Mel1) From Saccharomyces
Cerevisiae
pdb|3LRL|A Chain A, Structure Of Alfa-Galactosidase (Mel1) From Saccharomyces
Cerevisiae With Melibiose
Length = 479
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
MGW W F C+ +SE+L AD + G +GY+YI +DDCW R
Sbjct: 32 MGWDNWNTFACD----------VSEQLLLDTADRISDLGLKDMGYKYIILDDCW-SSGRD 80
Query: 61 FNGRLQADAKRFPRGIADLSNYV 83
+G L AD ++FP G+ +++++
Sbjct: 81 SDGFLVADEQKFPNGMGHVADHL 103
>pdb|3LRM|A Chain A, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|B Chain B, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|C Chain C, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|D Chain D, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
Length = 479
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
MGW W F C+ +SE+L AD + G +GY+YI +DDCW R
Sbjct: 32 MGWDNWNTFACD----------VSEQLLLDTADRISDLGLKDMGYKYIILDDCW-SSGRD 80
Query: 61 FNGRLQADAKRFPRGIADLSNYV 83
+G L AD ++FP G+ +++++
Sbjct: 81 SDGFLVADEQKFPNGMGHVADHL 103
>pdb|3A21|A Chain A, Crystal Structure Of Streptomyces Avermitilis Beta-L-
Arabinopyranosidase
pdb|3A21|B Chain B, Crystal Structure Of Streptomyces Avermitilis Beta-L-
Arabinopyranosidase
pdb|3A22|A Chain A, Crystal Structure Of Beta-L-Arabinopyranosidase
Complexed With L- Arabinose
pdb|3A22|B Chain B, Crystal Structure Of Beta-L-Arabinopyranosidase
Complexed With L- Arabinose
pdb|3A23|A Chain A, Crystal Structure Of Beta-l-arabinopyranosidase
Complexed With D- Galactose
pdb|3A23|B Chain B, Crystal Structure Of Beta-l-arabinopyranosidase
Complexed With D- Galactose
Length = 614
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
MGW +W F D + + D V+ G A GY YINID+ W TR
Sbjct: 14 MGWASWNSFAAKIDYS----------VIKKQVDAFVAAGLPAAGYTYINIDEGWWQGTRD 63
Query: 61 FNGRLQADAKRFPRGIADLSNYVST 85
G + D +P G++ ++ Y+ +
Sbjct: 64 SAGNITVDTAEWPGGMSAITAYIHS 88
>pdb|3DLA|A Chain A, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|B Chain B, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|C Chain C, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|D Chain D, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3SYT|A Chain A, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|B Chain B, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|C Chain C, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|D Chain D, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
Length = 680
Score = 28.9 bits (63), Expect = 0.74, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 40 YAAVGYEYINIDDCWLDKTRSF-NGRLQADAKRFPRGI 76
YAA G D W +T + NG L A+++RFP+G+
Sbjct: 231 YAAAGEGESTTDLAWDGQTMIWENGALLAESERFPKGV 268
>pdb|3SDB|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Apo Form
pdb|3SEQ|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|B Chain B, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|C Chain C, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|D Chain D, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEZ|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|B Chain B, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|C Chain C, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|D Chain D, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SZG|A Chain A, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|B Chain B, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|C Chain C, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|D Chain D, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
Length = 680
Score = 28.9 bits (63), Expect = 0.75, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 40 YAAVGYEYINIDDCWLDKTRSF-NGRLQADAKRFPRGI 76
YAA G D W +T + NG L A+++RFP+G+
Sbjct: 231 YAAAGEGESTTDLAWDGQTMIWENGALLAESERFPKGV 268
>pdb|2XN0|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm, Ptcl4 Derivative
pdb|2XN0|B Chain B, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm, Ptcl4 Derivative
pdb|2XN1|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|B Chain B, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|C Chain C, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|D Chain D, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
Length = 732
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 43 VGYEYINIDDCWL---DKTRSFNGRLQADAKRFPRGIADLSNYV 83
+G E +DD W D S G + K+FP G+ ++YV
Sbjct: 362 LGLEMFVLDDGWFGHRDDDNSSLGDWKVYKKKFPNGLGHFADYV 405
>pdb|2XN2|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Galactose
Length = 732
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 43 VGYEYINIDDCWL---DKTRSFNGRLQADAKRFPRGIADLSNYV 83
+G E +DD W D S G + K+FP G+ ++YV
Sbjct: 362 LGLEMFVLDDGWFGHRDDDNSSLGDWKVYKKKFPNGLGHFADYV 405
>pdb|1J27|A Chain A, Crystal Structure Of A Hypothetical Protein, Tt1725,
From Thermus Thermophilus Hb8 At 1.7a Resolution
Length = 102
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 39 GYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRF 72
GY VG+ + D W+++T R A+A F
Sbjct: 51 GYEVVGFTLLGNDPAWVEETMRAAARFLAEAGGF 84
>pdb|2JPF|A Chain A, Bpp3783_115-220
Length = 127
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 47 YINIDDCWLDKTRSFNGRLQADAKRFPRGIADLSN 81
+ N+D WLD R+ + LQ D K + + + DL
Sbjct: 32 HANLDVKWLDGLRAGSMALQGDVKVWMQNLEDLHT 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,752,048
Number of Sequences: 62578
Number of extensions: 89845
Number of successful extensions: 195
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 175
Number of HSP's gapped (non-prelim): 17
length of query: 85
length of database: 14,973,337
effective HSP length: 53
effective length of query: 32
effective length of database: 11,656,703
effective search space: 373014496
effective search space used: 373014496
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)