Query psy10252
Match_columns 85
No_of_seqs 115 out of 1033
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 21:45:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10252.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10252hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02808 alpha-galactosidase 100.0 4E-31 8.6E-36 197.6 6.8 75 1-85 34-108 (386)
2 PLN02229 alpha-galactosidase 100.0 6E-31 1.3E-35 198.4 6.7 75 1-85 65-139 (427)
3 PLN02692 alpha-galactosidase 100.0 1.4E-30 3.1E-35 195.6 7.1 75 1-85 58-132 (412)
4 PLN03231 putative alpha-galact 100.0 2.3E-30 5.1E-35 191.8 6.7 74 1-85 3-97 (357)
5 KOG2366|consensus 100.0 1.1E-30 2.5E-35 193.7 4.8 85 1-85 35-119 (414)
6 PLN02899 alpha-galactosidase 100.0 1.3E-28 2.8E-33 191.4 6.7 74 1-85 33-124 (633)
7 PF02065 Melibiase: Melibiase; 99.9 2.9E-22 6.2E-27 150.3 4.9 70 1-85 43-115 (394)
8 COG3345 GalA Alpha-galactosida 99.7 6.7E-17 1.4E-21 125.3 5.4 70 1-85 294-366 (687)
9 PLN02219 probable galactinol-- 99.4 1.3E-13 2.7E-18 109.9 6.1 71 1-84 201-295 (775)
10 PLN02711 Probable galactinol-- 99.4 2.4E-13 5.1E-18 108.4 6.6 72 1-85 215-316 (777)
11 PLN02355 probable galactinol-- 99.4 3.7E-13 8.1E-18 107.2 6.1 70 1-84 205-303 (758)
12 cd06592 GH31_glucosidase_KIAA1 99.4 8.1E-13 1.8E-17 95.9 6.1 66 2-85 16-81 (303)
13 PLN02684 Probable galactinol-- 99.4 9.3E-13 2E-17 104.8 5.8 70 1-84 204-294 (750)
14 PF05691 Raffinose_syn: Raffin 99.3 2.4E-12 5.2E-17 102.8 6.1 72 1-85 197-299 (747)
15 PLN02982 galactinol-raffinose 98.7 1.7E-08 3.7E-13 81.4 3.5 46 1-59 224-269 (865)
16 cd06593 GH31_xylosidase_YicI Y 98.6 9.4E-08 2E-12 69.2 5.8 57 23-85 21-77 (308)
17 cd06595 GH31_xylosidase_XylS-l 98.4 1E-06 2.3E-11 63.7 6.2 59 23-85 22-85 (292)
18 cd06589 GH31 The enzymes of gl 98.4 1.1E-06 2.3E-11 62.7 6.2 55 23-85 21-77 (265)
19 cd06599 GH31_glycosidase_Aec37 98.3 1.5E-06 3.4E-11 63.5 5.9 59 23-85 26-84 (317)
20 cd06598 GH31_transferase_CtsZ 98.2 3E-06 6.5E-11 61.9 6.2 59 23-85 21-81 (317)
21 cd06603 GH31_GANC_GANAB_alpha 98.1 5.9E-06 1.3E-10 60.8 5.9 55 23-85 21-75 (339)
22 cd06591 GH31_xylosidase_XylS X 98.1 7.1E-06 1.5E-10 60.0 5.9 57 23-85 21-77 (319)
23 cd06602 GH31_MGAM_SI_GAA This 98.1 6.4E-06 1.4E-10 60.9 5.8 55 23-85 21-77 (339)
24 cd06601 GH31_lyase_GLase GLase 98.1 8.3E-06 1.8E-10 60.4 6.2 55 23-85 21-75 (332)
25 cd06604 GH31_glucosidase_II_Ma 98.1 9.1E-06 2E-10 59.8 6.0 55 23-85 21-75 (339)
26 cd06600 GH31_MGAM-like This fa 98.0 1.1E-05 2.3E-10 59.1 5.7 55 23-85 21-75 (317)
27 cd06594 GH31_glucosidase_YihQ 98.0 2E-05 4.4E-10 57.8 6.5 57 24-85 21-82 (317)
28 PF01055 Glyco_hydro_31: Glyco 97.9 2.3E-05 4.9E-10 59.0 5.7 55 23-85 40-94 (441)
29 PRK10658 putative alpha-glucos 97.8 5.9E-05 1.3E-09 60.4 6.1 57 23-85 280-336 (665)
30 cd06597 GH31_transferase_CtsY 97.5 0.00026 5.6E-09 52.4 6.1 58 23-85 21-96 (340)
31 PRK10426 alpha-glucosidase; Pr 97.5 0.0003 6.5E-09 56.1 6.3 57 24-85 219-280 (635)
32 PLN02763 hydrolase, hydrolyzin 97.3 0.00054 1.2E-08 57.1 6.2 55 23-85 198-252 (978)
33 COG1501 Alpha-glucosidases, fa 97.1 0.001 2.2E-08 54.3 5.5 55 23-85 277-332 (772)
34 PF10566 Glyco_hydro_97: Glyco 96.6 0.0065 1.4E-07 44.3 5.5 56 22-85 28-84 (273)
35 KOG1065|consensus 96.6 0.0052 1.1E-07 50.4 5.4 55 23-85 308-362 (805)
36 PF01043 SecA_PP_bind: SecA pr 75.7 12 0.00026 23.7 5.3 55 24-80 58-112 (113)
37 PRK06233 hypothetical protein; 75.2 2.5 5.5E-05 31.7 2.3 31 24-54 162-194 (372)
38 PRK09121 5-methyltetrahydropte 74.5 2.6 5.7E-05 31.3 2.2 31 24-54 147-179 (339)
39 PRK06520 5-methyltetrahydropte 68.9 4.4 9.6E-05 30.4 2.4 31 24-54 161-193 (368)
40 COG2894 MinD Septum formation 63.7 9.3 0.0002 27.9 3.1 26 22-52 96-121 (272)
41 KOG1066|consensus 62.8 11 0.00024 31.6 3.7 54 23-84 369-422 (915)
42 PF02113 Peptidase_S13: D-Ala- 59.5 24 0.00052 27.2 4.9 35 23-58 94-128 (444)
43 PF11148 DUF2922: Protein of u 55.4 21 0.00046 20.3 3.2 25 17-41 20-44 (69)
44 PF08784 RPA_C: Replication pr 55.0 14 0.00029 22.4 2.4 25 23-52 77-101 (102)
45 PF07485 DUF1529: Domain of Un 54.1 12 0.00027 24.2 2.2 51 1-56 41-93 (123)
46 cd02931 ER_like_FMN Enoate red 51.5 21 0.00046 26.9 3.4 60 21-83 138-211 (382)
47 PRK00652 lpxK tetraacyldisacch 48.7 32 0.00069 25.6 3.9 16 43-58 141-156 (325)
48 cd02933 OYE_like_FMN Old yello 48.0 30 0.00066 25.6 3.7 53 21-73 140-205 (338)
49 PF10305 Fmp27_SW: RNA pol II 47.6 14 0.0003 22.9 1.6 21 63-85 69-89 (103)
50 cd02932 OYE_YqiM_FMN Old yello 47.3 22 0.00048 26.1 2.9 53 21-73 142-207 (336)
51 PF08479 POTRA_2: POTRA domain 46.5 20 0.00044 20.4 2.1 27 18-45 26-52 (76)
52 PRK01906 tetraacyldisaccharide 46.3 44 0.00094 25.1 4.3 15 43-57 148-162 (338)
53 COG4874 Uncharacterized protei 45.2 46 0.001 24.6 4.1 22 33-55 60-81 (318)
54 PF01717 Meth_synt_2: Cobalami 44.9 19 0.00041 26.1 2.2 30 25-54 146-177 (324)
55 cd03312 CIMS_N_terminal_like C 44.5 27 0.00058 26.2 3.0 31 25-55 174-206 (360)
56 PF09992 DUF2233: Predicted pe 44.3 22 0.00047 23.2 2.2 26 27-56 117-142 (170)
57 TIGR00666 PBP4 D-alanyl-D-alan 44.2 64 0.0014 24.0 5.0 34 23-57 67-100 (345)
58 cd04747 OYE_like_5_FMN Old yel 44.0 29 0.00063 26.2 3.1 60 21-83 132-204 (361)
59 PRK09200 preprotein translocas 42.6 35 0.00077 28.6 3.6 53 28-82 286-338 (790)
60 cd03527 RuBisCO_small Ribulose 42.4 32 0.00069 21.5 2.6 20 23-42 12-31 (99)
61 COG0463 WcaA Glycosyltransfera 41.5 45 0.00097 19.8 3.2 29 26-56 16-44 (291)
62 cd02930 DCR_FMN 2,4-dienoyl-Co 41.5 32 0.0007 25.4 3.0 32 21-52 125-158 (353)
63 KOG4127|consensus 39.7 40 0.00086 26.2 3.2 47 22-82 312-359 (419)
64 PF08373 RAP: RAP domain; Int 39.5 19 0.00042 19.3 1.2 20 33-52 20-39 (58)
65 COG0436 Aspartate/tyrosine/aro 39.3 81 0.0018 23.8 4.9 36 16-57 172-208 (393)
66 CHL00130 rbcS ribulose-1,5-bis 38.7 38 0.00082 22.5 2.7 21 23-43 14-34 (138)
67 KOG3900|consensus 38.1 31 0.00067 26.0 2.5 35 1-35 325-368 (413)
68 KOG2366|consensus 38.1 53 0.0011 25.6 3.7 37 12-56 132-168 (414)
69 cd06438 EpsO_like EpsO protein 38.1 61 0.0013 20.8 3.7 29 25-53 9-37 (183)
70 TIGR00268 conserved hypothetic 37.6 31 0.00067 24.3 2.3 14 39-52 233-246 (252)
71 cd06433 GT_2_WfgS_like WfgS an 37.5 62 0.0013 20.3 3.6 31 24-56 9-39 (202)
72 cd04734 OYE_like_3_FMN Old yel 36.9 43 0.00092 24.8 3.0 52 22-73 130-194 (343)
73 PLN02475 5-methyltetrahydropte 36.9 32 0.0007 28.6 2.6 32 24-55 577-610 (766)
74 PLN02289 ribulose-bisphosphate 36.7 40 0.00087 23.3 2.6 21 23-43 76-96 (176)
75 PRK10605 N-ethylmaleimide redu 36.5 43 0.00094 25.1 3.0 53 21-73 147-212 (362)
76 smart00812 Alpha_L_fucos Alpha 36.1 60 0.0013 24.7 3.8 44 2-50 107-150 (384)
77 PF13670 PepSY_2: Peptidase pr 36.0 81 0.0018 18.2 3.7 47 17-69 23-74 (83)
78 cd02929 TMADH_HD_FMN Trimethyl 35.9 55 0.0012 24.5 3.5 53 21-73 138-203 (370)
79 COG0296 GlgB 1,4-alpha-glucan 35.9 59 0.0013 26.7 3.8 53 24-85 163-225 (628)
80 cd06913 beta3GnTL1_like Beta 1 35.3 80 0.0017 20.8 4.0 30 24-54 8-37 (219)
81 PF06006 DUF905: Bacterial pro 35.1 51 0.0011 19.5 2.6 52 28-85 9-65 (70)
82 PRK10645 divalent-cation toler 34.7 32 0.0007 21.8 1.8 58 22-85 18-85 (112)
83 cd08599 PI-PLCc_plant Catalyti 34.4 44 0.00095 23.9 2.6 24 26-56 30-53 (228)
84 PF12419 DUF3670: SNF2 Helicas 34.4 53 0.0011 21.3 2.9 31 20-52 81-111 (141)
85 cd03311 CIMS_C_terminal_like C 34.2 41 0.00088 24.4 2.5 31 25-55 147-180 (332)
86 COG4451 RbcS Ribulose bisphosp 32.7 62 0.0013 21.2 2.9 25 23-48 19-43 (127)
87 cd04469 S1_Hex1 S1_Hex1: Hex1, 32.4 51 0.0011 19.6 2.3 35 45-83 5-40 (75)
88 PF06543 Lac_bphage_repr: Lact 32.3 41 0.00089 18.5 1.7 24 2-35 19-42 (49)
89 PF07302 AroM: AroM protein; 32.1 63 0.0014 23.0 3.1 30 23-57 162-192 (221)
90 PRK12898 secA preprotein trans 32.0 81 0.0018 26.0 4.1 49 33-83 336-384 (656)
91 COG1878 Kynurenine formamidase 31.9 26 0.00057 24.7 1.2 26 29-54 135-160 (218)
92 PF01981 PTH2: Peptidyl-tRNA h 31.8 1E+02 0.0022 19.1 3.8 29 24-56 59-87 (116)
93 PRK05222 5-methyltetrahydropte 31.8 43 0.00094 27.8 2.5 30 25-54 573-604 (758)
94 cd08628 PI-PLCc_gamma2 Catalyt 31.7 43 0.00094 24.3 2.3 50 26-82 30-82 (254)
95 cd06596 GH31_CPE1046 CPE1046 i 31.6 58 0.0013 23.8 2.9 44 24-85 43-86 (261)
96 PRK03745 signal recognition pa 31.5 71 0.0015 20.0 2.9 57 22-84 28-93 (100)
97 cd04192 GT_2_like_e Subfamily 30.8 93 0.002 20.1 3.7 30 24-53 8-37 (229)
98 PF04079 DUF387: Putative tran 30.6 81 0.0018 21.1 3.3 33 24-57 25-59 (159)
99 PRK13523 NADPH dehydrogenase N 30.2 58 0.0013 24.2 2.8 53 21-73 130-195 (337)
100 PRK05222 5-methyltetrahydropte 29.9 58 0.0012 27.1 3.0 18 39-56 192-209 (758)
101 COG1663 LpxK Tetraacyldisaccha 29.4 56 0.0012 24.8 2.6 15 43-57 140-154 (336)
102 PRK08575 5-methyltetrahydropte 29.2 62 0.0013 23.8 2.8 31 24-55 152-184 (326)
103 TIGR00682 lpxK tetraacyldisacc 29.1 1.1E+02 0.0023 22.7 4.0 15 43-57 120-134 (311)
104 cd06421 CESA_CelA_like CESA_Ce 28.7 1.2E+02 0.0026 19.8 4.0 30 26-55 15-44 (234)
105 smart00674 CENPB Putative DNA- 28.5 30 0.00064 19.0 0.8 30 23-56 25-54 (66)
106 COG0620 MetE Methionine syntha 28.4 53 0.0011 24.5 2.3 33 24-56 149-184 (330)
107 PRK00957 methionine synthase; 28.1 63 0.0014 23.2 2.6 31 25-55 136-169 (305)
108 PF00101 RuBisCO_small: Ribulo 27.8 77 0.0017 19.7 2.7 19 23-41 11-29 (99)
109 cd01524 RHOD_Pyr_redox Member 27.7 28 0.0006 20.1 0.6 16 40-55 71-86 (90)
110 cd02407 PTH2_family Peptidyl-t 27.7 1.3E+02 0.0027 19.0 3.7 29 24-56 58-86 (115)
111 PF06955 XET_C: Xyloglucan end 27.6 26 0.00057 19.0 0.5 9 46-54 30-38 (51)
112 TIGR00283 arch_pth2 peptidyl-t 27.5 1.3E+02 0.0028 19.1 3.7 30 23-56 57-86 (115)
113 PRK04322 peptidyl-tRNA hydrola 26.8 1.4E+02 0.003 18.9 3.8 29 24-56 56-84 (113)
114 cd02430 PTH2 Peptidyl-tRNA hyd 26.6 1.5E+02 0.0032 18.8 3.8 30 23-56 57-86 (115)
115 PRK12906 secA preprotein trans 26.5 1.1E+02 0.0023 25.9 3.9 53 28-82 298-350 (796)
116 cd04735 OYE_like_4_FMN Old yel 26.4 71 0.0015 23.7 2.7 53 21-73 132-197 (353)
117 TIGR03103 trio_acet_GNAT GNAT- 26.2 67 0.0015 25.5 2.7 27 48-84 5-31 (547)
118 cd04196 GT_2_like_d Subfamily 26.0 1.1E+02 0.0025 19.4 3.4 30 25-56 10-39 (214)
119 PF14955 MRP-S24: Mitochondria 25.8 24 0.00052 23.4 0.1 10 2-11 34-43 (136)
120 cd04468 S1_eIF5A S1_eIF5A: Euk 25.7 75 0.0016 18.5 2.2 36 45-84 6-41 (69)
121 PF07631 PSD4: Protein of unkn 25.7 14 0.0003 23.9 -1.0 45 24-74 34-80 (128)
122 TIGR00963 secA preprotein tran 25.5 1E+02 0.0022 25.9 3.6 52 29-82 264-315 (745)
123 PF11740 KfrA_N: Plasmid repli 25.5 83 0.0018 19.2 2.6 20 23-42 1-20 (120)
124 PF13167 GTP-bdg_N: GTP-bindin 25.2 1.4E+02 0.003 18.4 3.5 34 16-54 34-67 (95)
125 cd04190 Chitin_synth_C C-termi 25.2 99 0.0022 21.1 3.1 33 24-56 7-49 (244)
126 cd02803 OYE_like_FMN_family Ol 25.0 1E+02 0.0023 22.1 3.3 33 21-53 129-163 (327)
127 PRK10018 putative glycosyl tra 24.9 1.2E+02 0.0026 21.7 3.6 30 24-55 16-45 (279)
128 cd08598 PI-PLC1c_yeast Catalyt 24.9 79 0.0017 22.6 2.6 52 24-82 28-82 (231)
129 PF00128 Alpha-amylase: Alpha 24.6 83 0.0018 21.5 2.7 18 24-41 50-67 (316)
130 PRK15458 tagatose 6-phosphate 24.5 99 0.0022 24.2 3.2 32 23-55 100-131 (426)
131 cd06436 GlcNAc-1-P_transferase 24.4 1.5E+02 0.0032 19.3 3.8 29 24-55 8-36 (191)
132 PLN02607 1-aminocyclopropane-1 24.3 3E+02 0.0065 21.0 5.8 31 20-56 214-244 (447)
133 cd02525 Succinoglycan_BP_ExoA 24.2 1.4E+02 0.0031 19.5 3.7 30 24-53 11-40 (249)
134 KOG1406|consensus 24.1 2E+02 0.0044 21.8 4.7 24 34-57 281-304 (408)
135 KOG3445|consensus 24.0 1.5E+02 0.0034 19.8 3.7 44 22-69 88-131 (145)
136 PLN02376 1-aminocyclopropane-1 24.0 2.9E+02 0.0063 21.5 5.8 30 21-56 214-243 (496)
137 cd08558 PI-PLCc_eukaryota Cata 24.0 78 0.0017 22.6 2.4 27 24-57 28-54 (226)
138 PF00581 Rhodanese: Rhodanese- 24.0 53 0.0012 19.0 1.4 15 41-55 93-108 (113)
139 PF00724 Oxidored_FMN: NADH:fl 23.9 28 0.00061 25.7 0.2 53 21-73 137-202 (341)
140 PRK11113 D-alanyl-D-alanine ca 23.7 2.2E+02 0.0047 22.3 5.0 34 23-57 111-144 (477)
141 PRK01207 methionine synthase; 23.6 73 0.0016 24.1 2.3 31 24-54 143-182 (343)
142 PF04313 HSDR_N: Type I restri 23.3 94 0.002 20.7 2.6 27 23-53 2-29 (194)
143 PF13614 AAA_31: AAA domain; P 23.2 54 0.0012 20.5 1.4 28 23-56 102-129 (157)
144 COG1400 SEC65 Signal recogniti 23.0 1.5E+02 0.0033 18.3 3.3 43 42-84 43-87 (93)
145 TIGR02810 agaZ_gatZ D-tagatose 23.0 1.1E+02 0.0024 23.9 3.3 31 23-54 96-126 (420)
146 cd02520 Glucosylceramide_synth 23.0 96 0.0021 20.1 2.6 28 26-55 14-41 (196)
147 PRK12902 secA preprotein trans 22.6 1.3E+02 0.0027 26.1 3.7 54 27-82 296-349 (939)
148 PF13545 HTH_Crp_2: Crp-like h 22.5 1.5E+02 0.0032 16.2 3.2 28 23-50 40-67 (76)
149 PF07244 Surf_Ag_VNR: Surface 22.4 1.5E+02 0.0032 16.2 3.2 31 19-50 28-58 (78)
150 PRK06369 nac nascent polypepti 22.4 1.4E+02 0.003 19.2 3.1 26 23-51 5-32 (115)
151 PRK12904 preprotein translocas 22.4 1.3E+02 0.0028 25.6 3.7 53 28-82 288-340 (830)
152 cd06427 CESA_like_2 CESA_like_ 22.1 1.8E+02 0.0039 19.5 3.9 30 24-53 12-41 (241)
153 cd04188 DPG_synthase DPG_synth 21.8 1.4E+02 0.0031 19.4 3.3 31 25-55 9-41 (211)
154 TIGR03714 secA2 accessory Sec 21.8 1.4E+02 0.0031 25.1 3.8 55 26-82 280-334 (762)
155 PHA02357 hypothetical protein 21.6 1.1E+02 0.0024 18.4 2.4 25 28-52 7-32 (81)
156 cd02510 pp-GalNAc-T pp-GalNAc- 21.6 1.4E+02 0.003 20.9 3.4 29 26-54 12-40 (299)
157 PRK14558 pyrH uridylate kinase 21.5 1.4E+02 0.0031 20.5 3.4 30 22-53 19-48 (231)
158 TIGR01371 met_syn_B12ind 5-met 21.5 1E+02 0.0023 25.5 3.0 15 39-53 583-597 (750)
159 cd06378 PBP1_iGluR_NMDA_NR2 N- 21.4 2E+02 0.0043 21.3 4.3 29 24-52 202-230 (362)
160 COG0112 GlyA Glycine/serine hy 21.2 93 0.002 24.3 2.5 25 24-49 285-309 (413)
161 PRK12326 preprotein translocas 21.1 1.5E+02 0.0032 25.0 3.8 51 30-82 287-337 (764)
162 cd04733 OYE_like_2_FMN Old yel 21.1 1E+02 0.0022 22.6 2.7 53 21-73 137-202 (338)
163 KOG3220|consensus 21.0 94 0.002 22.3 2.3 10 43-52 105-114 (225)
164 PRK15052 D-tagatose-1,6-bispho 21.0 1.3E+02 0.0028 23.6 3.2 31 23-54 97-127 (421)
165 PRK06052 5-methyltetrahydropte 20.8 83 0.0018 23.9 2.1 29 24-52 137-167 (344)
166 PRK12353 putative amino acid k 20.5 1.5E+02 0.0033 21.8 3.4 29 23-53 23-51 (314)
167 smart00642 Aamy Alpha-amylase 20.4 1.5E+02 0.0032 19.6 3.1 23 24-52 68-90 (166)
168 PLN02411 12-oxophytodienoate r 20.2 1.4E+02 0.003 22.6 3.3 53 21-73 153-218 (391)
169 cd08597 PI-PLCc_PRIP_metazoa C 20.2 86 0.0019 22.8 2.0 24 26-56 30-53 (260)
170 PF01738 DLH: Dienelactone hyd 20.2 1.7E+02 0.0038 19.3 3.5 24 23-52 26-49 (218)
171 COG0263 ProB Glutamate 5-kinas 20.1 2E+02 0.0044 22.2 4.1 37 20-58 22-58 (369)
172 COG0621 MiaB 2-methylthioadeni 20.1 1.2E+02 0.0026 23.7 3.0 19 24-42 174-192 (437)
173 PRK12903 secA preprotein trans 20.0 1.4E+02 0.0031 25.7 3.5 55 26-82 282-336 (925)
No 1
>PLN02808 alpha-galactosidase
Probab=99.97 E-value=4e-31 Score=197.56 Aligned_cols=75 Identities=49% Similarity=1.034 Sum_probs=73.5
Q ss_pred CcccchhhhhccCCCCCCCCCcCCHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCCCCceeecCCCCCCCHHHHH
Q psy10252 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRFPRGIADLS 80 (85)
Q Consensus 1 mGW~SW~~~~~~~~~~~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~ 80 (85)
||||||++|+|+ |||+.|+++|++|++.||+++||+||+|||||+...||++|+++||++|||+||++|+
T Consensus 34 mGWnsW~~~~~~----------i~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~la 103 (386)
T PLN02808 34 MGWNSWNHFQCN----------INETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGNLVPKASTFPSGIKALA 103 (386)
T ss_pred ceEEchHHHCCC----------CCHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcCccHHHHH
Confidence 899999999999 9999999999999999999999999999999999889999999999999999999999
Q ss_pred HHHhC
Q psy10252 81 NYVST 85 (85)
Q Consensus 81 ~~ih~ 85 (85)
+|||+
T Consensus 104 d~iH~ 108 (386)
T PLN02808 104 DYVHS 108 (386)
T ss_pred HHHHH
Confidence 99996
No 2
>PLN02229 alpha-galactosidase
Probab=99.97 E-value=6e-31 Score=198.37 Aligned_cols=75 Identities=47% Similarity=0.931 Sum_probs=73.3
Q ss_pred CcccchhhhhccCCCCCCCCCcCCHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCCCCceeecCCCCCCCHHHHH
Q psy10252 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRFPRGIADLS 80 (85)
Q Consensus 1 mGW~SW~~~~~~~~~~~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~ 80 (85)
||||||+.|+|+ |||+.|+++|++|++.||+++||+||+|||||+...||+.|+++||++|||+|||+|+
T Consensus 65 mGWnSWn~~~~~----------i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP~G~k~la 134 (427)
T PLN02229 65 MGWNSWNFFACN----------INETVIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFPSGIKLLA 134 (427)
T ss_pred ceEEchhhhCcc----------cCHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcCCcHHHHH
Confidence 899999999999 9999999999999999999999999999999998889999999999999999999999
Q ss_pred HHHhC
Q psy10252 81 NYVST 85 (85)
Q Consensus 81 ~~ih~ 85 (85)
+|||+
T Consensus 135 dyiH~ 139 (427)
T PLN02229 135 DYVHS 139 (427)
T ss_pred HHHHH
Confidence 99996
No 3
>PLN02692 alpha-galactosidase
Probab=99.96 E-value=1.4e-30 Score=195.62 Aligned_cols=75 Identities=43% Similarity=0.981 Sum_probs=73.5
Q ss_pred CcccchhhhhccCCCCCCCCCcCCHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCCCCceeecCCCCCCCHHHHH
Q psy10252 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRFPRGIADLS 80 (85)
Q Consensus 1 mGW~SW~~~~~~~~~~~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~ 80 (85)
||||||++|+|+ |||+.|+++|++|++.||+++||+||+|||||+...||+.|+|+||++|||+||++|+
T Consensus 58 mGWnSW~~~~~~----------i~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d~~kFP~G~k~la 127 (412)
T PLN02692 58 MGWNSWNHFSCK----------IDEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIARDEKGNLVPKKSTFPSGIKALA 127 (412)
T ss_pred ceEEchhhhCcc----------cCHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCCCCCCCCeeeChhhcCCcHHHHH
Confidence 899999999999 9999999999999999999999999999999999899999999999999999999999
Q ss_pred HHHhC
Q psy10252 81 NYVST 85 (85)
Q Consensus 81 ~~ih~ 85 (85)
+|||+
T Consensus 128 dyiH~ 132 (412)
T PLN02692 128 DYVHS 132 (412)
T ss_pred HHHHH
Confidence 99996
No 4
>PLN03231 putative alpha-galactosidase; Provisional
Probab=99.96 E-value=2.3e-30 Score=191.83 Aligned_cols=74 Identities=38% Similarity=0.621 Sum_probs=69.8
Q ss_pred CcccchhhhhccCCCCCCCCCcCCHHHHHHHHHHHHHcCccccCceEEEeccccccC----------------CCCCCCc
Q psy10252 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDK----------------TRSFNGR 64 (85)
Q Consensus 1 mGW~SW~~~~~~~~~~~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~----------------~~d~~G~ 64 (85)
||||||+.|+|+ |||+.|+++|+ |++.||+++||+||+|||||+.. .||++|+
T Consensus 3 MGWNSWn~f~~~----------i~E~~i~~~Ad-~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~ 71 (357)
T PLN03231 3 RGWNSYDSFSFT----------ISEEQFLENAK-IVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGR 71 (357)
T ss_pred CCccchhccCcC----------cCHHHHHHHHH-HHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCC
Confidence 999999999999 99999999999 77899999999999999999864 2688999
Q ss_pred eeecCCCCCC-----CHHHHHHHHhC
Q psy10252 65 LQADAKRFPR-----GIADLSNYVST 85 (85)
Q Consensus 65 ~~~d~~kFP~-----Gl~~l~~~ih~ 85 (85)
++||++|||+ |||+|++|||+
T Consensus 72 l~pd~~rFPs~~~~~G~k~lADyvHs 97 (357)
T PLN03231 72 PLPDPKRWPSTTGGKGFAPIAAKVHA 97 (357)
T ss_pred cccCcccCCCCccccCcHHHHHHHHh
Confidence 9999999999 99999999996
No 5
>KOG2366|consensus
Probab=99.96 E-value=1.1e-30 Score=193.73 Aligned_cols=85 Identities=64% Similarity=1.211 Sum_probs=83.9
Q ss_pred CcccchhhhhccCCCCCCCCCcCCHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCCCCceeecCCCCCCCHHHHH
Q psy10252 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRFPRGIADLS 80 (85)
Q Consensus 1 mGW~SW~~~~~~~~~~~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~ 80 (85)
|||+||+.|.|+.+|..+|++||+|+.++++|++|++.|+.++||+||+|||||....||.+|+++++++|||+||++|+
T Consensus 35 MGw~sW~~f~cniDCv~~pd~cIsE~l~~~~ad~mvseG~~~vGY~yi~iDDCW~e~~Rd~~grLva~~~rFP~Gi~~la 114 (414)
T KOG2366|consen 35 MGWNSWERFRCNIDCVFGPDFCISEQLFKEMADAMVSEGLADVGYEYINIDDCWSEVTRDSDGRLVADPSRFPSGIKALA 114 (414)
T ss_pred cccccccceeeecccccCCccchhHHHHHHHHHHHHHhHHHhcCcEEEechhhhhhhccCCccccccChhhcccchhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhC
Q psy10252 81 NYVST 85 (85)
Q Consensus 81 ~~ih~ 85 (85)
+|+|+
T Consensus 115 dyvHs 119 (414)
T KOG2366|consen 115 DYVHS 119 (414)
T ss_pred hchhh
Confidence 99996
No 6
>PLN02899 alpha-galactosidase
Probab=99.95 E-value=1.3e-28 Score=191.37 Aligned_cols=74 Identities=31% Similarity=0.589 Sum_probs=68.9
Q ss_pred CcccchhhhhccCCCCCCCCCcCCHHHHHHHHHHHHHcCccccCceEEEeccccccCC-------------CCCCCceee
Q psy10252 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKT-------------RSFNGRLQA 67 (85)
Q Consensus 1 mGW~SW~~~~~~~~~~~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~-------------~d~~G~~~~ 67 (85)
||||||+.|.|. |||+.|+++||. ++.||+++||+||+|||||+... ||++|+++|
T Consensus 33 MGWNSWn~f~~~----------I~E~~i~~~Ad~-vs~GLk~~GY~YVnIDDcW~~~~~~g~~~~s~g~~~~D~~GrLvP 101 (633)
T PLN02899 33 RGWNSYDSFSWI----------VSEEEFLQNAEI-VSQRLLPFGYEYVVVDYLWYRKKVEGAYVDSLGFDVIDEWGRPIP 101 (633)
T ss_pred CCCcchhhhccC----------CCHHHHHHHHHH-HHcchHhhCCeEEEEccccccccccccccccccccccCCCCCCcc
Confidence 999999999998 999999999995 57899999999999999998642 578899999
Q ss_pred cCCCCCC-----CHHHHHHHHhC
Q psy10252 68 DAKRFPR-----GIADLSNYVST 85 (85)
Q Consensus 68 d~~kFP~-----Gl~~l~~~ih~ 85 (85)
|++|||+ |||+|++|||+
T Consensus 102 Dp~RFPSs~~g~GmK~LADYVHs 124 (633)
T PLN02899 102 DPGRWPSSRGGKGFTEVAEKVHA 124 (633)
T ss_pred CcccCCCCccCCCcHHHHHHHHh
Confidence 9999998 99999999996
No 7
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=99.86 E-value=2.9e-22 Score=150.33 Aligned_cols=70 Identities=34% Similarity=0.778 Sum_probs=58.7
Q ss_pred CcccchhhhhccCCCCCCCCCcCCHHHHHHHHHHHHHcCccccCceEEEeccccccCCCC---CCCceeecCCCCCCCHH
Q psy10252 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS---FNGRLQADAKRFPRGIA 77 (85)
Q Consensus 1 mGW~SW~~~~~~~~~~~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d---~~G~~~~d~~kFP~Gl~ 77 (85)
||||||++++++ +||+.|+++|+.++ ++||++|+|||||+....+ ..|+|.+|++|||+||+
T Consensus 43 v~~nsW~~~~~d----------~~e~~i~~~a~~~~-----~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~ 107 (394)
T PF02065_consen 43 VGWNSWEAYYFD----------ITEEKILELADAAA-----ELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLK 107 (394)
T ss_dssp EEEESHHHHTTG------------HHHHHHHHHHHH-----HHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHH
T ss_pred eEEEcccccCcC----------CCHHHHHHHHHHHH-----HhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHH
Confidence 699999999999 99999999999884 5789999999999975222 34999999999999999
Q ss_pred HHHHHHhC
Q psy10252 78 DLSNYVST 85 (85)
Q Consensus 78 ~l~~~ih~ 85 (85)
+|+++||+
T Consensus 108 ~l~~~i~~ 115 (394)
T PF02065_consen 108 PLADYIHS 115 (394)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999995
No 8
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=6.7e-17 Score=125.34 Aligned_cols=70 Identities=23% Similarity=0.532 Sum_probs=61.8
Q ss_pred CcccchhhhhccCCCCCCCCCcCCHHHHHHHHHHHHHcCccccCceEEEeccccccCCCC---CCCceeecCCCCCCCHH
Q psy10252 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS---FNGRLQADAKRFPRGIA 77 (85)
Q Consensus 1 mGW~SW~~~~~~~~~~~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d---~~G~~~~d~~kFP~Gl~ 77 (85)
||||||++|+.+ +|++.|+++++..+ +.|.+.|+|||||++...| ..|+|.++.+|||+||.
T Consensus 294 i~~nsWea~Yfd----------~t~e~ile~vk~ak-----k~gvE~FvlDDGwfg~rndd~~slGDWlv~seKfPsgiE 358 (687)
T COG3345 294 IGWNSWEAYYFD----------FTEEEILENVKEAK-----KFGVELFVLDDGWFGGRNDDLKSLGDWLVNSEKFPSGIE 358 (687)
T ss_pred ceeeceeeeeec----------CCHHHHHHHHHHHh-----hcCeEEEEEccccccccCcchhhhhceecchhhccccHH
Confidence 799999999999 89999999999864 4678999999999974333 23999999999999999
Q ss_pred HHHHHHhC
Q psy10252 78 DLSNYVST 85 (85)
Q Consensus 78 ~l~~~ih~ 85 (85)
.|+..||+
T Consensus 359 ~li~~I~e 366 (687)
T COG3345 359 ELIEAIAE 366 (687)
T ss_pred HHHHHHHH
Confidence 99999984
No 9
>PLN02219 probable galactinol--sucrose galactosyltransferase 2
Probab=99.45 E-value=1.3e-13 Score=109.91 Aligned_cols=71 Identities=17% Similarity=0.372 Sum_probs=57.6
Q ss_pred CcccchhhhhccCCCCCCCCCcCCHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCC----------------CCc
Q psy10252 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSF----------------NGR 64 (85)
Q Consensus 1 mGW~SW~~~~~~~~~~~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~----------------~G~ 64 (85)
+|||||++|+.+ |||+.|++.++.|++.|.. .++++||||||....+. .-+
T Consensus 201 ~GWCTWdafy~d----------Vt~~~I~~~l~~l~e~gip---~~~viIDDGwQsi~~~~~~~~~~~~~g~qf~~rL~~ 267 (775)
T PLN02219 201 FGWCTWDAFYTD----------VTAEGVDEGLKSLSEGGTP---PKFLIIDDGWQQIENKEKDENCVVQEGAQFATRLTG 267 (775)
T ss_pred eeEEEhhHhhcc----------CCHHHHHHHHHHHHhCCCC---ceEEEEccCccccccccccccccccccchhhhhhcc
Confidence 599999999998 9999999999999998776 47999999999854331 122
Q ss_pred eeecCC--------CCCCCHHHHHHHHh
Q psy10252 65 LQADAK--------RFPRGIADLSNYVS 84 (85)
Q Consensus 65 ~~~d~~--------kFP~Gl~~l~~~ih 84 (85)
+..+++ .||.||+++++.|+
T Consensus 268 f~en~KF~~~~~~~~fp~Glk~~V~~iK 295 (775)
T PLN02219 268 IKENAKFQKNDQKNEQVSGLKHVVDDAK 295 (775)
T ss_pred ccccccccccccccCCCCcHHHHHHHHH
Confidence 444442 58999999999886
No 10
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=99.43 E-value=2.4e-13 Score=108.39 Aligned_cols=72 Identities=17% Similarity=0.396 Sum_probs=56.9
Q ss_pred CcccchhhhhccCCCCCCCCCcCCHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCCC-------------C----
Q psy10252 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFN-------------G---- 63 (85)
Q Consensus 1 mGW~SW~~~~~~~~~~~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~-------------G---- 63 (85)
+|||||++|+.+ ||++.|++.++.|++.|.+. ++++||||||+...+.. |
T Consensus 215 fGWCTWdAfy~~----------Vt~egI~~gl~~L~~~Gip~---~~vIIDDGWQsi~~d~~~~~~~~~~~~~~~g~q~~ 281 (777)
T PLN02711 215 FGWCTWDAFYLT----------VHPQGVWEGVKGLVDGGCPP---GLVLIDDGWQSICHDEDPISDQEGMNRTVAGEQMP 281 (777)
T ss_pred ceEEehhHhccc----------CCHHHHHHHHHHHHhCCCCc---cEEEEcCCcccccccCcccccccccccccccchhh
Confidence 599999999999 99999999999999988874 69999999997432211 1
Q ss_pred ----ceeec---------CCCCCCCHHHHHHHHhC
Q psy10252 64 ----RLQAD---------AKRFPRGIADLSNYVST 85 (85)
Q Consensus 64 ----~~~~d---------~~kFP~Gl~~l~~~ih~ 85 (85)
++..| +..||.||+.+++.|++
T Consensus 282 ~rL~~f~en~KF~~~~~~~~~~p~Glk~~v~~iK~ 316 (777)
T PLN02711 282 CRLLKFEENYKFRDYVSPKSLSNKGMGAFIRDLKE 316 (777)
T ss_pred hhhccccccccccccccccCCCCCcHHHHHHHHHh
Confidence 13344 44568899999998863
No 11
>PLN02355 probable galactinol--sucrose galactosyltransferase 1
Probab=99.41 E-value=3.7e-13 Score=107.22 Aligned_cols=70 Identities=19% Similarity=0.500 Sum_probs=56.2
Q ss_pred CcccchhhhhccCCCCCCCCCcCCHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCCCC----------------c
Q psy10252 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNG----------------R 64 (85)
Q Consensus 1 mGW~SW~~~~~~~~~~~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G----------------~ 64 (85)
+|||||++|+.+ |||+.|++.++.|++.|.. .++++||||||....|..+ +
T Consensus 205 ~GWCTW~afy~~----------Vt~~~I~~~l~~l~~~g~p---~~~viIDDGwQs~~~d~~~~~~~~~~~~q~~~rL~~ 271 (758)
T PLN02355 205 FGWCTWDAFYTN----------VTAEGVKQGLESLEKGGVT---PKFVIIDDGWQSVGMDPTGIECLADNSANFANRLTH 271 (758)
T ss_pred eeEEehhHhhcc----------CCHHHHHHHHHHHHhCCCC---ccEEEEeccccccccccccccccccccchhhhhhcc
Confidence 599999999998 9999999999999987776 4799999999985332222 2
Q ss_pred eeecCCCCC-------------CCHHHHHHHHh
Q psy10252 65 LQADAKRFP-------------RGIADLSNYVS 84 (85)
Q Consensus 65 ~~~d~~kFP-------------~Gl~~l~~~ih 84 (85)
+..|+ ||| .||+++++.|+
T Consensus 272 f~~n~-KF~~~~~~~~~~~~~~~Glk~~V~~iK 303 (758)
T PLN02355 272 IKENH-KFQKNGKEGHRVDDPALGLGHIVTEIK 303 (758)
T ss_pred ccccc-cccccccccccccCCCCcHHHHHHHHH
Confidence 34555 776 49999998886
No 12
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.38 E-value=8.1e-13 Score=95.88 Aligned_cols=66 Identities=23% Similarity=0.559 Sum_probs=59.7
Q ss_pred cccchhhhhccCCCCCCCCCcCCHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCCCCceeecCCCCCCCHHHHHH
Q psy10252 2 GWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRFPRGIADLSN 81 (85)
Q Consensus 2 GW~SW~~~~~~~~~~~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~~ 81 (85)
.||||+++.+. +||+.|++.|+.+++.|+. ++.|+||++|+.. .|+++.|++|||+ ++.|++
T Consensus 16 ~W~~W~~~~~~----------~s~~~v~~~~~~~~~~~iP---~d~i~iD~~w~~~----~g~f~~d~~~FPd-p~~mi~ 77 (303)
T cd06592 16 IWSTWARYKAD----------INQETVLNYAQEIIDNGFP---NGQIEIDDNWETC----YGDFDFDPTKFPD-PKGMID 77 (303)
T ss_pred ccCChhhhccC----------cCHHHHHHHHHHHHHcCCC---CCeEEeCCCcccc----CCccccChhhCCC-HHHHHH
Confidence 49999999777 8999999999999987764 6899999999864 6899999999998 999999
Q ss_pred HHhC
Q psy10252 82 YVST 85 (85)
Q Consensus 82 ~ih~ 85 (85)
+||+
T Consensus 78 ~l~~ 81 (303)
T cd06592 78 QLHD 81 (303)
T ss_pred HHHH
Confidence 9995
No 13
>PLN02684 Probable galactinol--sucrose galactosyltransferase
Probab=99.36 E-value=9.3e-13 Score=104.82 Aligned_cols=70 Identities=19% Similarity=0.487 Sum_probs=56.7
Q ss_pred CcccchhhhhccCCCCCCCCCcCCHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCCC---------------Cce
Q psy10252 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFN---------------GRL 65 (85)
Q Consensus 1 mGW~SW~~~~~~~~~~~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~---------------G~~ 65 (85)
+|||||++|+.+ ||++.|++.++.|++.|.. .++++||||||....+.. -++
T Consensus 204 fGWCTWdafy~d----------Vt~~~I~~~l~~l~~~g~p---~~~vIIDDGwQs~~~d~~~~~~~~~~~q~~~rL~~f 270 (750)
T PLN02684 204 FGWCTWDAFYQE----------VTQEGVEAGLKSLAAGGTP---PKFVIIDDGWQSVGGDPTVEAGDEKKEQPLLRLTGI 270 (750)
T ss_pred eeEEEhhHhhcc----------CCHHHHHHHHHHHHhCCCC---ceEEEEecccccccccccccccccccchhhhhhccC
Confidence 599999999998 9999999999999988776 479999999998543321 113
Q ss_pred eecCCCCCC------CHHHHHHHHh
Q psy10252 66 QADAKRFPR------GIADLSNYVS 84 (85)
Q Consensus 66 ~~d~~kFP~------Gl~~l~~~ih 84 (85)
..+ .|||+ ||+.+++.|+
T Consensus 271 ~en-~KF~~~~~p~~Glk~~V~~iK 294 (750)
T PLN02684 271 KEN-EKFKKKDDPNVGIKNIVNIAK 294 (750)
T ss_pred ccc-cccccccCCCccHHHHHHHHH
Confidence 344 57874 9999999986
No 14
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=99.32 E-value=2.4e-12 Score=102.81 Aligned_cols=72 Identities=24% Similarity=0.538 Sum_probs=56.7
Q ss_pred CcccchhhhhccCCCCCCCCCcCCHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCCC------------C-----
Q psy10252 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFN------------G----- 63 (85)
Q Consensus 1 mGW~SW~~~~~~~~~~~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~------------G----- 63 (85)
+|||||++|+.+ ||++.|++..+.|.+.|++. ++++||||||...++.. |
T Consensus 197 lGwCTWdaf~~~----------v~~~~i~~~l~~L~~~gi~~---~~viIDDGWQ~~~~~~~~~~~~~~~~~~~g~q~~~ 263 (747)
T PF05691_consen 197 LGWCTWDAFYQD----------VTEEGILEGLKSLEEGGIPP---RFVIIDDGWQSVDNDGDDPSKDGMNLVQEGAQFPR 263 (747)
T ss_pred hccccHHHhccc----------cCHHHHHHHHHHHHhCCCCc---eEEEEecchhcccccCcccccccccccccccccch
Confidence 699999999998 99999999999999988874 69999999997543322 1
Q ss_pred ce---e------ec-----CCCCCCCHHHHHHHHhC
Q psy10252 64 RL---Q------AD-----AKRFPRGIADLSNYVST 85 (85)
Q Consensus 64 ~~---~------~d-----~~kFP~Gl~~l~~~ih~ 85 (85)
+| . .. ++.||+||+.+++.|++
T Consensus 264 rl~~~~en~kF~~~~~~~~~~~~~~GL~~~V~~ik~ 299 (747)
T PF05691_consen 264 RLTDFKENSKFRAYKSGKSPEAFPSGLKHFVSDIKE 299 (747)
T ss_pred hhhhhhhhhhhhhccCCCcccCCcccHHHHHHHHHh
Confidence 11 1 11 24699999999999874
No 15
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=98.66 E-value=1.7e-08 Score=81.43 Aligned_cols=46 Identities=20% Similarity=0.451 Sum_probs=41.0
Q ss_pred CcccchhhhhccCCCCCCCCCcCCHHHHHHHHHHHHHcCccccCceEEEeccccccCCC
Q psy10252 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTR 59 (85)
Q Consensus 1 mGW~SW~~~~~~~~~~~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~ 59 (85)
.|||||.+|+.+ |+.+.|.+-++.|++-|... ++++||||||....
T Consensus 224 FGWCTWDAFY~~----------V~p~GV~~Gv~~l~~gG~pp---rfvIIDDGWQsi~~ 269 (865)
T PLN02982 224 FGWCTWDAFYLT----------VDPVGVWHGVKEFAEGGVPP---RFLIIDDGWQSINF 269 (865)
T ss_pred ceEEeechhhcc----------cCHHHHHHHHHHHhcCCCCc---cEEEEecchhhccc
Confidence 499999999998 99999999999998888775 69999999997543
No 16
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=98.61 E-value=9.4e-08 Score=69.19 Aligned_cols=57 Identities=18% Similarity=0.286 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCCCCceeecCCCCCCCHHHHHHHHhC
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRFPRGIADLSNYVST 85 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~~~ih~ 85 (85)
.|++.|++.++.+++.|+. ++.|.||++|+.. ...|++.+|++|||+ +++|++.||+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP---~d~~~lD~~w~~~--~~~~~f~~d~~~FPd-~~~~i~~l~~ 77 (308)
T cd06593 21 YDEEEVNEFADGMRERNLP---CDVIHLDCFWMKE--FQWCDFEFDPDRFPD-PEGMLSRLKE 77 (308)
T ss_pred CCHHHHHHHHHHHHHcCCC---eeEEEEecccccC--CcceeeEECcccCCC-HHHHHHHHHH
Confidence 6999999999999887766 6899999999953 223599999999999 9999999995
No 17
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=98.38 E-value=1e-06 Score=63.71 Aligned_cols=59 Identities=17% Similarity=0.149 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEeccccccCC-----CCCCCceeecCCCCCCCHHHHHHHHhC
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKT-----RSFNGRLQADAKRFPRGIADLSNYVST 85 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~-----~d~~G~~~~d~~kFP~Gl~~l~~~ih~ 85 (85)
-|++.|++.|+.+.+.+++ .+.|.||..|+... .+..+++..|+++||+ .+.|++.||+
T Consensus 22 ~s~~ev~~v~~~~r~~~iP---~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPd-p~~mi~~Lh~ 85 (292)
T cd06595 22 YSDEEYLALMDRFKKHNIP---LDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPD-PEKLLQDLHD 85 (292)
T ss_pred CCHHHHHHHHHHHHHhCCC---ccEEEEecccccccccccccCCcceeEEChhcCCC-HHHHHHHHHH
Confidence 4899999999999998877 68999999998632 2356899999999999 9999999995
No 18
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=98.38 E-value=1.1e-06 Score=62.71 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCCCCce--eecCCCCCCCHHHHHHHHhC
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRL--QADAKRFPRGIADLSNYVST 85 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~--~~d~~kFP~Gl~~l~~~ih~ 85 (85)
.+++.|++.++.+.+.++. .+.|.||++|+.. .+++ ..|+++||+ ++.|+++||+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP---~d~~~lD~~~~~~----~~~f~~~~d~~~Fpd-p~~~i~~l~~ 77 (265)
T cd06589 21 GDQDKVLEVIDGMRENDIP---LDGFVLDDDYTDG----YGDFTFDWDAGKFPN-PKSMIDELHD 77 (265)
T ss_pred CCHHHHHHHHHHHHHcCCC---ccEEEECcccccC----CceeeeecChhhCCC-HHHHHHHHHH
Confidence 6999999999999998876 6899999999975 4566 999999999 9999999995
No 19
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=98.31 E-value=1.5e-06 Score=63.46 Aligned_cols=59 Identities=8% Similarity=0.080 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCCCCceeecCCCCCCCHHHHHHHHhC
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRFPRGIADLSNYVST 85 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~~~ih~ 85 (85)
.+|+.|++.++.+++.+++ ++.|.||.+|+.........+..|+++||+ ++.|++.||+
T Consensus 26 ~~q~~v~~~~~~~r~~~iP---~d~i~ld~~~~~~~~~~~~~f~~d~~~FPd-p~~mi~~L~~ 84 (317)
T cd06599 26 DAQEALLEFIDKCREHDIP---CDSFHLSSGYTSIEGGKRYVFNWNKDRFPD-PAAFVAKFHE 84 (317)
T ss_pred cHHHHHHHHHHHHHHcCCC---eeEEEEeccccccCCCceeeeecCcccCCC-HHHHHHHHHH
Confidence 4699999999999998876 688999999986422234569999999999 9999999995
No 20
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=98.25 E-value=3e-06 Score=61.93 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEeccccccCCC--CCCCceeecCCCCCCCHHHHHHHHhC
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTR--SFNGRLQADAKRFPRGIADLSNYVST 85 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~--d~~G~~~~d~~kFP~Gl~~l~~~ih~ 85 (85)
-+++.|++.++.+++.+++ .+.|.||.+|..... ...|++..|++|||+ .+.|++.||+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP---~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPd-p~~mi~~L~~ 81 (317)
T cd06598 21 RNWQEVDDTIKTLREKDFP---LDAAILDLYWFGKDIDKGHMGNLDWDRKAFPD-PAGMIADLAK 81 (317)
T ss_pred CCHHHHHHHHHHHHHhCCC---ceEEEEechhhcCcccCCceeeeEeccccCCC-HHHHHHHHHH
Confidence 3899999999999998876 589999999986432 246899999999999 9999999995
No 21
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=98.14 E-value=5.9e-06 Score=60.83 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCCCCceeecCCCCCCCHHHHHHHHhC
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRFPRGIADLSNYVST 85 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~~~ih~ 85 (85)
-|++.|++.|+.+++.+++ .+.|.||..|... .+.+..|+++||+ ++.|++.||+
T Consensus 21 ~~~~ev~~~~~~~~~~~iP---~d~i~lD~~~~~~----~~~f~~d~~~FPd-p~~mi~~L~~ 75 (339)
T cd06603 21 KDQEDVKEVDAGFDEHDIP---YDVIWLDIEHTDG----KRYFTWDKKKFPD-PEKMQEKLAS 75 (339)
T ss_pred CCHHHHHHHHHHHHHcCCC---ceEEEEChHHhCC----CCceEeCcccCCC-HHHHHHHHHH
Confidence 4899999999999998877 6889999999753 5789999999999 9999999995
No 22
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=98.12 E-value=7.1e-06 Score=60.04 Aligned_cols=57 Identities=18% Similarity=0.174 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCCCCceeecCCCCCCCHHHHHHHHhC
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRFPRGIADLSNYVST 85 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~~~ih~ 85 (85)
-+++.|++.++.+++.++. .+.|.||..|.... ..+++..|++|||+ ++.|+++||+
T Consensus 21 ~~~~ev~~~~~~~~~~~iP---~d~i~lD~~~~~~~--~~~~f~~d~~~FPd-p~~mi~~L~~ 77 (319)
T cd06591 21 KTQEELLDVAKEYRKRGIP---LDVIVQDWFYWPKQ--GWGEWKFDPERFPD-PKAMVRELHE 77 (319)
T ss_pred CCHHHHHHHHHHHHHhCCC---ccEEEEechhhcCC--CceeEEEChhhCCC-HHHHHHHHHH
Confidence 4899999999999987766 68999999887532 13599999999999 9999999995
No 23
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=98.12 E-value=6.4e-06 Score=60.86 Aligned_cols=55 Identities=13% Similarity=0.244 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCCCCceeecCCCCCCCH--HHHHHHHhC
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRFPRGI--ADLSNYVST 85 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl--~~l~~~ih~ 85 (85)
-+++.|++.++.+.+.+++ .+.|.||..|+.. .+++..|+++||+ . +.|++.||+
T Consensus 21 ~~~~~v~~~~~~~r~~~iP---~d~i~lD~~~~~~----~~~f~~d~~~FPd-p~~~~mi~~L~~ 77 (339)
T cd06602 21 KNVDEVKEVVENMRAAGIP---LDVQWNDIDYMDR----RRDFTLDPVRFPG-LKMPEFVDELHA 77 (339)
T ss_pred CCHHHHHHHHHHHHHhCCC---cceEEECcccccC----ccceecccccCCC-ccHHHHHHHHHH
Confidence 4899999999999998877 5789999999864 6899999999999 8 999999995
No 24
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=98.11 E-value=8.3e-06 Score=60.37 Aligned_cols=55 Identities=7% Similarity=0.159 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCCCCceeecCCCCCCCHHHHHHHHhC
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRFPRGIADLSNYVST 85 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~~~ih~ 85 (85)
-|++.|++.++.+.+.++. ++.|.||..|... .+.++.|+++||+ .+.|++.||+
T Consensus 21 ~~~~ev~~v~~~~r~~~IP---~D~i~lDidy~~~----~~~Ft~d~~~FPd-p~~mv~~L~~ 75 (332)
T cd06601 21 SNRSDLEEVVEGYRDNNIP---LDGLHVDVDFQDN----YRTFTTNGGGFPN-PKEMFDNLHN 75 (332)
T ss_pred CCHHHHHHHHHHHHHcCCC---CceEEEcCchhcC----CCceeecCCCCCC-HHHHHHHHHH
Confidence 4899999999999998877 6899999999854 6889999999999 9999999985
No 25
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=98.09 E-value=9.1e-06 Score=59.80 Aligned_cols=55 Identities=22% Similarity=0.271 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCCCCceeecCCCCCCCHHHHHHHHhC
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRFPRGIADLSNYVST 85 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~~~ih~ 85 (85)
-|++.|++.++.+++.++. ++.|.||..|+.. .+.+..|+++||+ .+.|++.||+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP---~d~i~lD~~~~~~----~~~f~~d~~~fPd-p~~m~~~l~~ 75 (339)
T cd06604 21 YPEEEVREIADEFRERDIP---CDAIYLDIDYMDG----YRVFTWDKERFPD-PKELIKELHE 75 (339)
T ss_pred CCHHHHHHHHHHHHHhCCC---cceEEECchhhCC----CCceeeccccCCC-HHHHHHHHHH
Confidence 3899999999999998877 5899999999863 6789999999998 9999999985
No 26
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=98.05 E-value=1.1e-05 Score=59.10 Aligned_cols=55 Identities=20% Similarity=0.382 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCCCCceeecCCCCCCCHHHHHHHHhC
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRFPRGIADLSNYVST 85 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~~~ih~ 85 (85)
-|++.|++.++.+.+.++. .+.|.||..|+.. .+.+..|+++||+ .+.|++.||+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP---~d~i~lD~~~~~~----~~~f~~d~~~FPd-p~~~i~~l~~ 75 (317)
T cd06600 21 YPQDKVVEVVDIMQKEGFP---YDVVFLDIHYMDS----YRLFTWDPYRFPE-PKKLIDELHK 75 (317)
T ss_pred CCHHHHHHHHHHHHHcCCC---cceEEEChhhhCC----CCceeechhcCCC-HHHHHHHHHH
Confidence 3899999999999998776 6899999999853 5789999999999 9999999995
No 27
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=98.01 E-value=2e-05 Score=57.77 Aligned_cols=57 Identities=12% Similarity=0.235 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCCCC-----ceeecCCCCCCCHHHHHHHHhC
Q psy10252 24 SERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNG-----RLQADAKRFPRGIADLSNYVST 85 (85)
Q Consensus 24 ~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G-----~~~~d~~kFP~Gl~~l~~~ih~ 85 (85)
+++.|++.++.+++.+++ .+.|.|| .|+...-...| ++..|+++||+ ++.|++.||+
T Consensus 21 s~~~v~~~~~~~~~~~iP---~d~i~ld-dw~~~~~~~~g~~~~~~f~~d~~~FPd-p~~mi~~Lh~ 82 (317)
T cd06594 21 GTDKVLEALEKARAAGVK---VAGLWLQ-DWTGRRETSFGDRLWWNWEWDPERYPG-LDELIEELKA 82 (317)
T ss_pred CHHHHHHHHHHHHHcCCC---eeEEEEc-cccCcccccccceeeeeeEEChhhCCC-HHHHHHHHHH
Confidence 899999999999998877 5789999 58642112223 47999999999 9999999995
No 28
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=97.93 E-value=2.3e-05 Score=58.99 Aligned_cols=55 Identities=25% Similarity=0.364 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCCCCceeecCCCCCCCHHHHHHHHhC
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRFPRGIADLSNYVST 85 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~~~ih~ 85 (85)
-|++.|++.++.+.+.++. ++.+.||+.|+.. .+++..|+++||+ ++.+++.||+
T Consensus 40 ~~~~~v~~~i~~~~~~~iP---~d~~~iD~~~~~~----~~~f~~d~~~FPd-~~~~~~~l~~ 94 (441)
T PF01055_consen 40 YNQDEVREVIDRYRSNGIP---LDVIWIDDDYQDG----YGDFTWDPERFPD-PKQMIDELHD 94 (441)
T ss_dssp TSHHHHHHHHHHHHHTT-----EEEEEE-GGGSBT----TBTT-B-TTTTTT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCC---ccceecccccccc----ccccccccccccc-hHHHHHhHhh
Confidence 4799999999999997766 6899999999974 5789999999998 9999999984
No 29
>PRK10658 putative alpha-glucosidase; Provisional
Probab=97.79 E-value=5.9e-05 Score=60.40 Aligned_cols=57 Identities=12% Similarity=0.236 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCCCCceeecCCCCCCCHHHHHHHHhC
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRFPRGIADLSNYVST 85 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~~~ih~ 85 (85)
-+|+.|++.++.+++.++. .+.|.||+.|.... ..++++.|+++||+ .+.|++.||+
T Consensus 280 ~~e~~v~~~~~~~r~~~iP---~d~i~lD~~w~~~~--~~~~f~wd~~~FPd-p~~mi~~L~~ 336 (665)
T PRK10658 280 YDEATVNSFIDGMAERDLP---LHVFHFDCFWMKEF--QWCDFEWDPRTFPD-PEGMLKRLKA 336 (665)
T ss_pred CCHHHHHHHHHHHHHcCCC---ceEEEEchhhhcCC--ceeeeEEChhhCCC-HHHHHHHHHH
Confidence 4799999999999998876 57899999998631 24689999999999 9999999995
No 30
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.54 E-value=0.00026 Score=52.45 Aligned_cols=58 Identities=12% Similarity=0.192 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEeccccccCCC------------C-----CCCceeecC-CCCCCCHHHHHHHHh
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTR------------S-----FNGRLQADA-KRFPRGIADLSNYVS 84 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~------------d-----~~G~~~~d~-~kFP~Gl~~l~~~ih 84 (85)
-|++.|++.|+.+++.++. ++.|.||+ |+.... + ..++...++ ++||+ ++.|++.||
T Consensus 21 ~~~~ev~~v~~~~~~~~iP---~d~i~lD~-W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPd-p~~mi~~Lh 95 (340)
T cd06597 21 DTQAEVMRQMDAHEEHGIP---VTVVVIEQ-WSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPN-PKGMIDELH 95 (340)
T ss_pred CCHHHHHHHHHHHHHcCCC---eeEEEEec-ccCcceeeeeccchhcccccCCcceecccccCccccCCC-HHHHHHHHH
Confidence 5899999999999998877 68999995 885311 1 124455553 68998 999999999
Q ss_pred C
Q psy10252 85 T 85 (85)
Q Consensus 85 ~ 85 (85)
+
T Consensus 96 ~ 96 (340)
T cd06597 96 E 96 (340)
T ss_pred H
Confidence 5
No 31
>PRK10426 alpha-glucosidase; Provisional
Probab=97.49 E-value=0.0003 Score=56.09 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCC-----CCceeecCCCCCCCHHHHHHHHhC
Q psy10252 24 SERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSF-----NGRLQADAKRFPRGIADLSNYVST 85 (85)
Q Consensus 24 ~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~-----~G~~~~d~~kFP~Gl~~l~~~ih~ 85 (85)
+++.|++.++.+.+.+++ .+.|.||| |+...... .+++..|+++||+ ++.|++.||+
T Consensus 219 ~~~~v~~v~~~~r~~~IP---~d~i~ldd-w~~~~~~~~g~~~~~~~~~d~~~FPd-p~~mi~~L~~ 280 (635)
T PRK10426 219 GTEVVQKKLDTMRNAGVK---VNGIWAQD-WSGIRMTSFGKRLMWNWKWDSERYPQ-LDSRIKQLNE 280 (635)
T ss_pred CHHHHHHHHHHHHHcCCC---eeEEEEec-ccccccccccccccccceEChhhCCC-HHHHHHHHHH
Confidence 577899999999988776 57888984 98532222 2468999999999 9999999995
No 32
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=97.35 E-value=0.00054 Score=57.09 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCCCCceeecCCCCCCCHHHHHHHHhC
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRFPRGIADLSNYVST 85 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~~~ih~ 85 (85)
-+++.|++.++.+.+.++. .+.|.||..|... ...+..|+++||+ .+.|++.||+
T Consensus 198 ~sq~eV~eva~~fre~~IP---~DvIwlDidYm~g----~~~FTwD~~rFPd-P~~mv~~Lh~ 252 (978)
T PLN02763 198 ESAKRVAEIARTFREKKIP---CDVVWMDIDYMDG----FRCFTFDKERFPD-PKGLADDLHS 252 (978)
T ss_pred CCHHHHHHHHHHHHHcCCC---ceEEEEehhhhcC----CCceeECcccCCC-HHHHHHHHHH
Confidence 3899999999999998776 6899999999753 5679999999999 9999999995
No 33
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=97.13 E-value=0.001 Score=54.35 Aligned_cols=55 Identities=18% Similarity=0.264 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEeccc-cccCCCCCCCceeecCCCCCCCHHHHHHHHhC
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDC-WLDKTRSFNGRLQADAKRFPRGIADLSNYVST 85 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdg-W~~~~~d~~G~~~~d~~kFP~Gl~~l~~~ih~ 85 (85)
-+|+.+.+.++.+.+..+. +..|.||.. |-. ..+.+..|+.+||+ .+.|+++||+
T Consensus 277 ~~e~~v~~~i~~~~~~~IP---~d~~~lD~~~~~~----~~~~F~wd~~~FP~-pk~mi~~l~~ 332 (772)
T COG1501 277 YDEDEVLEFIDEMRERDIP---LDVFVLDIDFWMD----NWGDFTWDPDRFPD-PKQMIAELHE 332 (772)
T ss_pred ccHHHHHHHHhhcccccCc---ceEEEEeehhhhc----cccceEECcccCCC-HHHHHHHHHh
Confidence 4899999999999775554 789999997 754 47889999999999 9999999995
No 34
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=96.57 E-value=0.0065 Score=44.29 Aligned_cols=56 Identities=14% Similarity=0.291 Sum_probs=34.9
Q ss_pred cCCHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCCCCcee-ecCCCCCCCHHHHHHHHhC
Q psy10252 22 CISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQ-ADAKRFPRGIADLSNYVST 85 (85)
Q Consensus 22 ~i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~-~d~~kFP~Gl~~l~~~ih~ 85 (85)
-+|-+..++.+|..++ .|++|++||+||.....+...++. +.+ . .-|+.|++|-++
T Consensus 28 g~~t~~~k~yIDfAa~-----~G~eYvlvD~GW~~~~~~~~~d~~~~~~-~--~dl~elv~Ya~~ 84 (273)
T PF10566_consen 28 GATTETQKRYIDFAAE-----MGIEYVLVDAGWYGWEKDDDFDFTKPIP-D--FDLPELVDYAKE 84 (273)
T ss_dssp SSSHHHHHHHHHHHHH-----TT-SEEEEBTTCCGS--TTT--TT-B-T-T----HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-----cCCCEEEeccccccccccccccccccCC-c--cCHHHHHHHHHH
Confidence 3789999999997654 678899999999853222222221 111 1 239999999753
No 35
>KOG1065|consensus
Probab=96.56 E-value=0.0052 Score=50.40 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCCCCceeecCCCCCCCHHHHHHHHhC
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRFPRGIADLSNYVST 85 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~~~ih~ 85 (85)
.+.+.|++.++.+.+.|+ +++.+.+|.-|... +++.++|+.+||. ++.+++.||+
T Consensus 308 ~nls~~~dvv~~~~~agi---Pld~~~~DiDyMd~----ykDFTvd~~~fp~-~~~fv~~Lh~ 362 (805)
T KOG1065|consen 308 KNLSVVRDVVENYRAAGI---PLDVIVIDIDYMDG----YKDFTVDKVWFPD-LKDFVDDLHA 362 (805)
T ss_pred ccHHHHHHHHHHHHHcCC---Ccceeeeehhhhhc----ccceeeccccCcc-hHHHHHHHHh
Confidence 688999999999988665 47899999999865 7899999999999 9999999995
No 36
>PF01043 SecA_PP_bind: SecA preprotein cross-linking domain; InterPro: IPR011130 The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain [].; GO: 0017038 protein import, 0016020 membrane; PDB: 3DIN_B 3JUX_A 3IQY_A 2IBM_A 3DL8_A 3JV2_B 3IQM_A 1TF2_A 1TF5_A 1M74_A ....
Probab=75.72 E-value=12 Score=23.74 Aligned_cols=55 Identities=16% Similarity=0.294 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCCCCceeecCCCCCCCHHHHH
Q psy10252 24 SERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRFPRGIADLS 80 (85)
Q Consensus 24 ~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~ 80 (85)
+...+.....+|.+.-|-..+-+||+-|+-=.-.+ ..+||..++. ||..||...+
T Consensus 58 ~~~~~~~i~~AL~A~~l~~rd~dYiV~dg~V~IVD-e~TGR~m~gR-rws~GLHQaI 112 (113)
T PF01043_consen 58 NSELYHHINQALKAHHLFKRDVDYIVRDGEVVIVD-EFTGRIMPGR-RWSDGLHQAI 112 (113)
T ss_dssp CHHHHHHHHHHHHHHHCSTTTTSEEEETTEEEEBC-TTTTSEBTT---STTTHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCcceEEEcCEEEEEE-CCCCCcCCCC-cCCchhhHhh
Confidence 44556666667777777778889999777544322 2469999995 9999997654
No 37
>PRK06233 hypothetical protein; Provisional
Probab=75.16 E-value=2.5 Score=31.74 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHH--cCccccCceEEEecccc
Q psy10252 24 SERLFRTMADLVVS--EGYAAVGYEYINIDDCW 54 (85)
Q Consensus 24 ~e~~i~~~ad~l~~--~gl~~~Gy~~~~iDdgW 54 (85)
.|+.+.+.|+++.+ .-|.++|.+||+||+.-
T Consensus 162 ~eel~~dlA~a~~~Ei~~L~~aG~~~IQiDeP~ 194 (372)
T PRK06233 162 WDDYLDDLAQAYHDTIQHFYDLGARYIQLDDTT 194 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 46677777776644 35788999999999964
No 38
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=74.46 E-value=2.6 Score=31.31 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHH--cCccccCceEEEecccc
Q psy10252 24 SERLFRTMADLVVS--EGYAAVGYEYINIDDCW 54 (85)
Q Consensus 24 ~e~~i~~~ad~l~~--~gl~~~Gy~~~~iDdgW 54 (85)
.++.+.+.|+++.+ ..|.++|.+||+||+--
T Consensus 147 ~~el~~dlA~al~~Ei~~L~~aG~~~IQiDeP~ 179 (339)
T PRK09121 147 REKLAWEFAKILNQEAKELEAAGVDIIQFDEPA 179 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEecccH
Confidence 46667777776644 35788999999999953
No 39
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=68.94 E-value=4.4 Score=30.44 Aligned_cols=31 Identities=19% Similarity=0.416 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHH--cCccccCceEEEecccc
Q psy10252 24 SERLFRTMADLVVS--EGYAAVGYEYINIDDCW 54 (85)
Q Consensus 24 ~e~~i~~~ad~l~~--~gl~~~Gy~~~~iDdgW 54 (85)
.++.+.+.|+++.+ .-|.++|.++|+||+--
T Consensus 161 ~~~~~~dlA~al~~Ei~~L~~aG~~~IQiDep~ 193 (368)
T PRK06520 161 LDDYFDDLAKTWRDAIKAFYDAGCRYLQLDDTV 193 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEecCcc
Confidence 35666666666543 35788999999999964
No 40
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=63.69 E-value=9.3 Score=27.88 Aligned_cols=26 Identities=19% Similarity=0.443 Sum_probs=21.4
Q ss_pred cCCHHHHHHHHHHHHHcCccccCceEEEecc
Q psy10252 22 CISERLFRTMADLVVSEGYAAVGYEYINIDD 52 (85)
Q Consensus 22 ~i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDd 52 (85)
-+|.+.++...+.|. +.+|+||++|+
T Consensus 96 alt~E~v~~vv~eL~-----~~~fDyIi~Ds 121 (272)
T COG2894 96 ALTPEGVKKVVNELK-----AMDFDYIIIDS 121 (272)
T ss_pred cCCHHHHHHHHHHHH-----hcCCCEEEecC
Confidence 478888888888764 46899999998
No 41
>KOG1066|consensus
Probab=62.76 E-value=11 Score=31.56 Aligned_cols=54 Identities=19% Similarity=0.186 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCCCCceeecCCCCCCCHHHHHHHHh
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRFPRGIADLSNYVS 84 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~~~ih 84 (85)
.+|+.|++.-+.|-+. +.-|+.+.||=-..+. .-..+.|+.+||+ .+.|.+.|.
T Consensus 369 ~DE~DV~~Vd~~FDeh---diP~DviWLDIEhtdg----KrYFTWDk~~FP~-P~~Ml~kLa 422 (915)
T KOG1066|consen 369 NDEEDVLTVDQGFDEH---DIPYDVIWLDIEHTDG----KRYFTWDKHKFPN-PKDMLKKLA 422 (915)
T ss_pred cchhhhhhhhcCcccc---CCccceEEEeeeecCC----ceeEeeccccCCC-HHHHHHHHH
Confidence 5788787776665442 3447888888766543 3458999999999 888888764
No 42
>PF02113 Peptidase_S13: D-Ala-D-Ala carboxypeptidase 3 (S13) family; InterPro: IPR000667 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This family of serine peptidases belong to MEROPS peptidase family S13 (D-Ala-D-Ala carboxypeptidase C, clan SE). The predicted active site residues for members of this family and family S12 occur in the motif SXXK. D-Ala-D-Ala carboxypeptidase C is involved in the metabolism of cell components []; it is synthesised with a leader peptide to target it to the cell membrane []. After cleavage of the leader peptide, the enzyme is retained in the membrane by a C-terminal anchor []. There are three families of serine-type D-Ala-D-Ala peptidase (designated S11, S12 and S13), which are also known as low molecular weight penicillin-binding proteins []. Family S13 comprises D-Ala-D-Ala peptidases that have sufficient sequence similarity around their active sites to assume a distant evolutionary relationship to other clan members; members of the S13 family also bind penicillin and have D-amino-peptidase activity. Proteases of family S11 have exclusive D-Ala-D-Ala peptidase activity, while some members of S12 are C beta-lactamases [].; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 3A3F_B 3A3E_B 3A3D_A 3A3I_B 2Y59_C 1W8Q_A 3ZVT_B 3ZVW_B 2VGJ_B 1W79_D ....
Probab=59.55 E-value=24 Score=27.22 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEeccccccCC
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKT 58 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~ 58 (85)
++.+.+.+.++.|++.|++.. -..|++|+.++...
T Consensus 94 l~~~~l~~la~~l~~~Gi~~I-~g~i~~D~s~f~~~ 128 (444)
T PF02113_consen 94 LTSEDLWALAAQLKAAGIKRI-TGDIILDDSLFDGP 128 (444)
T ss_dssp BCHHHHHHHHHHHHHTT-SEE-SSEEEEETTTC-S-
T ss_pred cCHHHHHHHHHHHHHcCCCeE-eeEEEEECcccCCC
Confidence 888899999999988887764 12579999998654
No 43
>PF11148 DUF2922: Protein of unknown function (DUF2922); InterPro: IPR021321 This bacterial family of proteins has no known function.
Probab=55.42 E-value=21 Score=20.30 Aligned_cols=25 Identities=8% Similarity=0.242 Sum_probs=20.4
Q ss_pred CCCCCcCCHHHHHHHHHHHHHcCcc
Q psy10252 17 NDPENCISERLFRTMADLVVSEGYA 41 (85)
Q Consensus 17 ~~~~~~i~e~~i~~~ad~l~~~gl~ 41 (85)
++|..-++++.|++.++.|++.++-
T Consensus 20 ~~pk~~lt~~~V~~~m~~ii~~~vf 44 (69)
T PF11148_consen 20 PNPKEDLTEAEVKAAMQAIIAKKVF 44 (69)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCe
Confidence 3667779999999999999886543
No 44
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=55.00 E-value=14 Score=22.39 Aligned_cols=25 Identities=40% Similarity=0.566 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEecc
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDD 52 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDd 52 (85)
++++.|+..++.|.+.|+ =|=.|||
T Consensus 77 ~~~~~v~~al~~L~~eG~-----IYsTiDd 101 (102)
T PF08784_consen 77 MSENEVRKALDFLSNEGH-----IYSTIDD 101 (102)
T ss_dssp S-HHHHHHHHHHHHHTTS-----EEESSST
T ss_pred cCHHHHHHHHHHHHhCCe-----EecccCC
Confidence 789999999999987654 4777776
No 45
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=54.08 E-value=12 Score=24.17 Aligned_cols=51 Identities=20% Similarity=0.333 Sum_probs=34.2
Q ss_pred CcccchhhhhccCC--CCCCCCCcCCHHHHHHHHHHHHHcCccccCceEEEecccccc
Q psy10252 1 MGWLAWERFRCNTD--CKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLD 56 (85)
Q Consensus 1 mGW~SW~~~~~~~~--~~~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~ 56 (85)
||-.||-+|....+ .-.-++..+.|+.|....++|.+.| .+..-|=-=|-.
T Consensus 41 ~~l~~~~aF~~~~~G~A~~~Gd~vll~~EV~pvi~aL~~~G-----I~vtAlHNH~l~ 93 (123)
T PF07485_consen 41 MGLTSWIAFEPDGDGKAMVMGDFVLLEDEVNPVISALRKNG-----IEVTALHNHWLF 93 (123)
T ss_pred cccceeEEEEECCCCcEEEeecEEecHHHHHHHHHHHHHCC-----ceEEEEeccccc
Confidence 56778887765321 1225677899999999999987654 445555555543
No 46
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=51.45 E-value=21 Score=26.85 Aligned_cols=60 Identities=12% Similarity=0.178 Sum_probs=39.7
Q ss_pred CcCCHHHHHHHHHHHHH--cCccccCceEEEecc---cc---------ccCCCCCCCceeecCCCCCCCHHHHHHHH
Q psy10252 21 NCISERLFRTMADLVVS--EGYAAVGYEYINIDD---CW---------LDKTRSFNGRLQADAKRFPRGIADLSNYV 83 (85)
Q Consensus 21 ~~i~e~~i~~~ad~l~~--~gl~~~Gy~~~~iDd---gW---------~~~~~d~~G~~~~d~~kFP~Gl~~l~~~i 83 (85)
..+|++.|.+..+.++. .-.+++||+-|.|=. |+ .....|++|--..+..||+ ..+++.|
T Consensus 138 ~~mt~~eI~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~---~eii~~v 211 (382)
T cd02931 138 RELTTEEVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFA---IEIVEEI 211 (382)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHH---HHHHHHH
Confidence 45899999988886643 345668999999987 76 2233466765555666774 3444444
No 47
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=48.72 E-value=32 Score=25.62 Aligned_cols=16 Identities=25% Similarity=0.244 Sum_probs=13.2
Q ss_pred cCceEEEeccccccCC
Q psy10252 43 VGYEYINIDDCWLDKT 58 (85)
Q Consensus 43 ~Gy~~~~iDdgW~~~~ 58 (85)
.|.+.|++|||.|...
T Consensus 141 ~~~dviilDDGfQh~~ 156 (325)
T PRK00652 141 HGADIIILDDGLQHYR 156 (325)
T ss_pred CCCCEEEEcCCccCcc
Confidence 3789999999999643
No 48
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=47.98 E-value=30 Score=25.63 Aligned_cols=53 Identities=11% Similarity=0.142 Sum_probs=36.0
Q ss_pred CcCCHHHHHHHHHHHHH--cCccccCceEEEecccc-----------ccCCCCCCCceeecCCCCC
Q psy10252 21 NCISERLFRTMADLVVS--EGYAAVGYEYINIDDCW-----------LDKTRSFNGRLQADAKRFP 73 (85)
Q Consensus 21 ~~i~e~~i~~~ad~l~~--~gl~~~Gy~~~~iDdgW-----------~~~~~d~~G~~~~d~~kFP 73 (85)
..+|++.|.+..+.++. .-.+++||+-|.|-.+- .....|++|--..+..||+
T Consensus 140 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~ 205 (338)
T cd02933 140 RALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFL 205 (338)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHH
Confidence 35889999988886643 35667899999998654 2223356654456666774
No 49
>PF10305 Fmp27_SW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019415 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a conserved region within FMP27 that contains characteristic SW and GKG sequence motifs.
Probab=47.57 E-value=14 Score=22.95 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=17.5
Q ss_pred CceeecCCCCCCCHHHHHHHHhC
Q psy10252 63 GRLQADAKRFPRGIADLSNYVST 85 (85)
Q Consensus 63 G~~~~d~~kFP~Gl~~l~~~ih~ 85 (85)
=++++++-.|| +..+.++||+
T Consensus 69 l~l~i~kPsFp--l~~~pdFLh~ 89 (103)
T PF10305_consen 69 LDLTIDKPSFP--LDDLPDFLHD 89 (103)
T ss_pred ccEEEeCCCCC--chhhHHHHHH
Confidence 35888888888 8999999984
No 50
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=47.34 E-value=22 Score=26.05 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=34.1
Q ss_pred CcCCHHHHHHHHHHHHH--cCccccCceEEEeccc--c---------ccCCCCCCCceeecCCCCC
Q psy10252 21 NCISERLFRTMADLVVS--EGYAAVGYEYINIDDC--W---------LDKTRSFNGRLQADAKRFP 73 (85)
Q Consensus 21 ~~i~e~~i~~~ad~l~~--~gl~~~Gy~~~~iDdg--W---------~~~~~d~~G~~~~d~~kFP 73 (85)
..+|++.|.+..+.++. .-.+++||+-|.|-.+ + .....|++|--..+.-+|+
T Consensus 142 ~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~ 207 (336)
T cd02932 142 RELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFL 207 (336)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHH
Confidence 35899888888886644 3456789999999874 3 2223455665445554553
No 51
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=46.46 E-value=20 Score=20.43 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=19.4
Q ss_pred CCCCcCCHHHHHHHHHHHHHcCccccCc
Q psy10252 18 DPENCISERLFRTMADLVVSEGYAAVGY 45 (85)
Q Consensus 18 ~~~~~i~e~~i~~~ad~l~~~gl~~~Gy 45 (85)
+-..|++.+.+.+.++.+.. -+.+.||
T Consensus 26 ~~g~~l~~~~l~~~~~~l~~-~y~~~GY 52 (76)
T PF08479_consen 26 YIGRCLTLADLQQLADALTN-YYREKGY 52 (76)
T ss_dssp GTTSBB-HHHHHHHHHHHHH-HHHHTT-
T ss_pred hcCCCcCHHHHHHHHHHHHH-HHHHcCc
Confidence 44578999999999998855 3666776
No 52
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=46.26 E-value=44 Score=25.06 Aligned_cols=15 Identities=27% Similarity=0.195 Sum_probs=12.6
Q ss_pred cCceEEEeccccccC
Q psy10252 43 VGYEYINIDDCWLDK 57 (85)
Q Consensus 43 ~Gy~~~~iDdgW~~~ 57 (85)
.|.+.|++|||-|..
T Consensus 148 ~~~dviIlDDGfQH~ 162 (338)
T PRK01906 148 PGVDVIVSDDGLQHY 162 (338)
T ss_pred CCCCEEEECCCCccc
Confidence 367899999999964
No 53
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=45.16 E-value=46 Score=24.62 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=17.4
Q ss_pred HHHHHcCccccCceEEEeccccc
Q psy10252 33 DLVVSEGYAAVGYEYINIDDCWL 55 (85)
Q Consensus 33 d~l~~~gl~~~Gy~~~~iDdgW~ 55 (85)
++|++ ||+..|.+.+++||-=+
T Consensus 60 ~amve-~L~~~GvdV~ifddtg~ 81 (318)
T COG4874 60 NAMVE-GLRQAGVDVVIFDDTGQ 81 (318)
T ss_pred HHHHH-HHHhcCceEEEeecCCC
Confidence 46655 89999999999999433
No 54
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=44.93 E-value=19 Score=26.14 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHH--cCccccCceEEEecccc
Q psy10252 25 ERLFRTMADLVVS--EGYAAVGYEYINIDDCW 54 (85)
Q Consensus 25 e~~i~~~ad~l~~--~gl~~~Gy~~~~iDdgW 54 (85)
++.+.+.|+++.+ ..|.++|.++|+||+--
T Consensus 146 ~~~~~dla~a~~~ei~~l~~~G~~~iQiDeP~ 177 (324)
T PF01717_consen 146 EELLEDLAEAYREEIRALYDAGCRYIQIDEPA 177 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-SEEEEEETC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEecchH
Confidence 4455555554433 24778899999999974
No 55
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=44.45 E-value=27 Score=26.19 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHH--cCccccCceEEEeccccc
Q psy10252 25 ERLFRTMADLVVS--EGYAAVGYEYINIDDCWL 55 (85)
Q Consensus 25 e~~i~~~ad~l~~--~gl~~~Gy~~~~iDdgW~ 55 (85)
++.+.+.+.++.+ ..|.++|.++|+||+--.
T Consensus 174 ~el~~dla~~y~~el~~L~~aG~~~IQiDEP~l 206 (360)
T cd03312 174 LSLLDKLLPVYKELLKKLAAAGAEWVQIDEPAL 206 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEeeCChh
Confidence 3444444443322 247889999999999543
No 56
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=44.34 E-value=22 Score=23.21 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHcCccccCceEEEecccccc
Q psy10252 27 LFRTMADLVVSEGYAAVGYEYINIDDCWLD 56 (85)
Q Consensus 27 ~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~ 56 (85)
.+.+.|+.|++.|+.+ -++||.|=++
T Consensus 117 tl~ela~~l~~lG~~~----AinLDGGgSs 142 (170)
T PF09992_consen 117 TLDELAQLLKSLGCVD----AINLDGGGSS 142 (170)
T ss_dssp -HHHHHHHHHHHT-SE----EEE---GGG-
T ss_pred CHHHHHHHHHHcCcCe----EEEecCCcce
Confidence 4667778887767765 5999999765
No 57
>TIGR00666 PBP4 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family. In E. coli, this protein is known as penicillin binding protein 4 (dacB). A signal sequence is cleaved from a precursor form. The protein is described as periplasmic in E. coli (Gram-negative) and extracellular in Actinomadura R39 (Gram-positive). Unlike some other proteins with similar activity, it does not form transpeptidation. It is not essential for viability. This family is related to class A beta-lactamases.
Probab=44.25 E-value=64 Score=23.97 Aligned_cols=34 Identities=9% Similarity=0.214 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEeccccccC
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDK 57 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~ 57 (85)
++.+.+.+.++.|++.|++..- --|++|+.++..
T Consensus 67 L~~~~L~~la~~l~~~Gi~~i~-G~v~~D~s~f~~ 100 (345)
T TIGR00666 67 LKRQDIRNLVATLKKSGVKQID-GNVLVDTSAFSS 100 (345)
T ss_pred cCHHHHHHHHHHHHHcCCcEEE-eeEEEEcccccC
Confidence 8888899999999888887531 138899988764
No 58
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=44.04 E-value=29 Score=26.16 Aligned_cols=60 Identities=13% Similarity=0.207 Sum_probs=39.5
Q ss_pred CcCCHHHHHHHHHHHHH--cCccccCceEEEecccc-----------ccCCCCCCCceeecCCCCCCCHHHHHHHH
Q psy10252 21 NCISERLFRTMADLVVS--EGYAAVGYEYINIDDCW-----------LDKTRSFNGRLQADAKRFPRGIADLSNYV 83 (85)
Q Consensus 21 ~~i~e~~i~~~ad~l~~--~gl~~~Gy~~~~iDdgW-----------~~~~~d~~G~~~~d~~kFP~Gl~~l~~~i 83 (85)
..+|++.|.+..+.++. .-.+++|++-|.|=.+- .....|++|-=..+..||+ ..+++.|
T Consensus 132 ~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~---~eii~ai 204 (361)
T cd04747 132 REMTEADIDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFA---AEVVKAI 204 (361)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHH---HHHHHHH
Confidence 35899999888886643 34567899999998765 1123466776566666774 3444444
No 59
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=42.55 E-value=35 Score=28.59 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcCccccCceEEEeccccccCCCCCCCceeecCCCCCCCHHHHHHH
Q psy10252 28 FRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRFPRGIADLSNY 82 (85)
Q Consensus 28 i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~~~ 82 (85)
+.....+|.+.-+-..+.+|++.|+--.-.+. .+|++.++. +|.+||..+++.
T Consensus 286 ~~~i~~Al~A~~~~~~d~dYiV~~~~v~ivD~-~TGr~~~gr-~~s~GlhQaiea 338 (790)
T PRK09200 286 YRHIILALRAHVLFKRDVDYIVYDGEIVLVDR-FTGRVLPGR-KLQDGLHQAIEA 338 (790)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEECCEEEEEEC-CCCcCCCCC-ccChHHHHHHHH
Confidence 34445566655555678899999886654332 369988886 999999887654
No 60
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=42.37 E-value=32 Score=21.50 Aligned_cols=20 Identities=20% Similarity=0.532 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHHcCccc
Q psy10252 23 ISERLFRTMADLVVSEGYAA 42 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~ 42 (85)
+|++.|.++++.|.+.|...
T Consensus 12 lt~~~i~~QI~yll~qG~~~ 31 (99)
T cd03527 12 LTDEQIAKQIDYIISNGWAP 31 (99)
T ss_pred CCHHHHHHHHHHHHhCCCEE
Confidence 89999999999999888763
No 61
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=41.48 E-value=45 Score=19.84 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHcCccccCceEEEecccccc
Q psy10252 26 RLFRTMADLVVSEGYAAVGYEYINIDDCWLD 56 (85)
Q Consensus 26 ~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~ 56 (85)
+.+.+..+.+.+..... ++.+++|||=.+
T Consensus 16 ~~l~~~l~s~~~q~~~~--~eiivvddgs~d 44 (291)
T COG0463 16 EYLPEALESLLNQTYKD--FEIIVVDDGSTD 44 (291)
T ss_pred hhHHHHHHHHHhhhhcc--eEEEEEeCCCCC
Confidence 44555555554433333 689999998543
No 62
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=41.46 E-value=32 Score=25.43 Aligned_cols=32 Identities=16% Similarity=0.141 Sum_probs=24.1
Q ss_pred CcCCHHHHHHHHHHHHH--cCccccCceEEEecc
Q psy10252 21 NCISERLFRTMADLVVS--EGYAAVGYEYINIDD 52 (85)
Q Consensus 21 ~~i~e~~i~~~ad~l~~--~gl~~~Gy~~~~iDd 52 (85)
..+|++.|.+..+.++. .-.+++||+-|.|=.
T Consensus 125 ~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ 158 (353)
T cd02930 125 RELSEEEIEQTIEDFARCAALAREAGYDGVEIMG 158 (353)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEec
Confidence 35899999888887644 345668999999944
No 63
>KOG4127|consensus
Probab=39.69 E-value=40 Score=26.19 Aligned_cols=47 Identities=26% Similarity=0.477 Sum_probs=30.3
Q ss_pred cCCHHHHHHHHHHHHHcCccc-cCceEEEeccccccCCCCCCCceeecCCCCCCCHHHHHHH
Q psy10252 22 CISERLFRTMADLVVSEGYAA-VGYEYINIDDCWLDKTRSFNGRLQADAKRFPRGIADLSNY 82 (85)
Q Consensus 22 ~i~e~~i~~~ad~l~~~gl~~-~Gy~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~~~ 82 (85)
|-+...|.+.|+-+-. +++ +|++.|-|-.++-+. .++|.||..+++|
T Consensus 312 c~~~A~v~~v~~Hi~h--Ir~VaG~~hIGlGg~yDGi------------~~~PkGLEDVSkY 359 (419)
T KOG4127|consen 312 CSDRATVSDVADHINH--IRAVAGIDHIGLGGDYDGI------------PRVPKGLEDVSKY 359 (419)
T ss_pred CCCcccHHHHHHHHHH--HHHhhccceeeccCCcCCc------------CCCCcchhhhhhh
Confidence 3355556666665422 222 688888887777543 3778888888776
No 64
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=39.48 E-value=19 Score=19.30 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=15.3
Q ss_pred HHHHHcCccccCceEEEecc
Q psy10252 33 DLVVSEGYAAVGYEYINIDD 52 (85)
Q Consensus 33 d~l~~~gl~~~Gy~~~~iDd 52 (85)
..|...-|+.+||+.|.|--
T Consensus 20 t~lk~r~L~~~G~~Vi~Ip~ 39 (58)
T PF08373_consen 20 TKLKHRHLKALGYKVISIPY 39 (58)
T ss_pred HHHHHHHHHHCCCEEEEecH
Confidence 34556668889999999875
No 65
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=39.29 E-value=81 Score=23.78 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=27.5
Q ss_pred CCCCC-CcCCHHHHHHHHHHHHHcCccccCceEEEeccccccC
Q psy10252 16 KNDPE-NCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDK 57 (85)
Q Consensus 16 ~~~~~-~~i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~ 57 (85)
++.|+ ...+++.+++.++..++.++ +++.|+.+..-
T Consensus 172 P~NPTGav~~~~~l~~i~~~a~~~~i------~ii~DEiY~~l 208 (393)
T COG0436 172 PNNPTGAVYSKEELKAIVELAREHDI------IIISDEIYEEL 208 (393)
T ss_pred CCCCcCcCCCHHHHHHHHHHHHHcCe------EEEEehhhhhc
Confidence 44555 57799999999998877443 78999999853
No 66
>CHL00130 rbcS ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit; Reviewed
Probab=38.68 E-value=38 Score=22.54 Aligned_cols=21 Identities=14% Similarity=0.379 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHHHcCcccc
Q psy10252 23 ISERLFRTMADLVVSEGYAAV 43 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~ 43 (85)
+|++.|.+|++.+.++|....
T Consensus 14 LTdeqI~kQI~Y~i~~GW~p~ 34 (138)
T CHL00130 14 LTDQQIEKQIQYAISKGWALN 34 (138)
T ss_pred CCHHHHHHHHHHHHhcCCeEE
Confidence 899999999999999888753
No 67
>KOG3900|consensus
Probab=38.11 E-value=31 Score=26.02 Aligned_cols=35 Identities=20% Similarity=0.567 Sum_probs=23.8
Q ss_pred Ccccch-------hhhhccCCCCCCCC--CcCCHHHHHHHHHHH
Q psy10252 1 MGWLAW-------ERFRCNTDCKNDPE--NCISERLFRTMADLV 35 (85)
Q Consensus 1 mGW~SW-------~~~~~~~~~~~~~~--~~i~e~~i~~~ad~l 35 (85)
+||+.| ++|+|.+.|+..-. .--+...|...+.++
T Consensus 325 lGW~dWIIaP~gy~A~yC~G~C~~p~~~~~~tnHa~vq~l~~~~ 368 (413)
T KOG3900|consen 325 LGWDDWIIAPKGYDANYCSGTCPFPLADHAATNHAIVQTLVHAV 368 (413)
T ss_pred cCCcceEeCCCcccCceecCcCCCchhhcCCcchHHHHHHHHhh
Confidence 699976 58999999997533 122456666666655
No 68
>KOG2366|consensus
Probab=38.10 E-value=53 Score=25.57 Aligned_cols=37 Identities=24% Similarity=0.442 Sum_probs=26.5
Q ss_pred cCCCCCCCCCcCCHHHHHHHHHHHHHcCccccCceEEEecccccc
Q psy10252 12 NTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLD 56 (85)
Q Consensus 12 ~~~~~~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~ 56 (85)
+.+|..+|. +.......|+.++ +-|.+|+.+|.|...
T Consensus 132 ~~TC~g~PG---S~~~e~~DA~tFA-----~WgvDylKlD~C~~~ 168 (414)
T KOG2366|consen 132 NFTCAGYPG---SLGHEESDAKTFA-----DWGVDYLKLDGCFNN 168 (414)
T ss_pred chhhccCCc---ccchhhhhhhhhH-----hhCCcEEeccccccc
Confidence 457888998 4444455566554 467899999999975
No 69
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=38.07 E-value=61 Score=20.77 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHcCccccCceEEEeccc
Q psy10252 25 ERLFRTMADLVVSEGYAAVGYEYINIDDC 53 (85)
Q Consensus 25 e~~i~~~ad~l~~~gl~~~Gy~~~~iDdg 53 (85)
++.|.+..+.+.+......-|+.+++||+
T Consensus 9 ~~~i~~~l~sl~~~~~p~~~~eiivvdd~ 37 (183)
T cd06438 9 EAVIGNTVRSLKAQDYPRELYRIFVVADN 37 (183)
T ss_pred HHHHHHHHHHHHhcCCCCcccEEEEEeCC
Confidence 35666777777654332234789999998
No 70
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=37.62 E-value=31 Score=24.28 Aligned_cols=14 Identities=21% Similarity=0.506 Sum_probs=10.9
Q ss_pred CccccCceEEEecc
Q psy10252 39 GYAAVGYEYINIDD 52 (85)
Q Consensus 39 gl~~~Gy~~~~iDd 52 (85)
.|+++||+||.||=
T Consensus 233 ~~~~~gf~~v~ldl 246 (252)
T TIGR00268 233 KFKDIGFRKVLIDL 246 (252)
T ss_pred HHHHcCCCeEEEcc
Confidence 57788888888874
No 71
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=37.49 E-value=62 Score=20.30 Aligned_cols=31 Identities=32% Similarity=0.410 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHHcCccccCceEEEecccccc
Q psy10252 24 SERLFRTMADLVVSEGYAAVGYEYINIDDCWLD 56 (85)
Q Consensus 24 ~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~ 56 (85)
.++.+.+..+.+.+...++ ++.+++|++=..
T Consensus 9 ~~~~l~~~l~sl~~q~~~~--~evivvDd~s~d 39 (202)
T cd06433 9 QAETLEETIDSVLSQTYPN--IEYIVIDGGSTD 39 (202)
T ss_pred hHHHHHHHHHHHHhCCCCC--ceEEEEeCCCCc
Confidence 3456777777776654443 799999998653
No 72
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=36.87 E-value=43 Score=24.84 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=34.4
Q ss_pred cCCHHHHHHHHHHHHH--cCccccCceEEEecc--ccc------c--C-CCCCCCceeecCCCCC
Q psy10252 22 CISERLFRTMADLVVS--EGYAAVGYEYINIDD--CWL------D--K-TRSFNGRLQADAKRFP 73 (85)
Q Consensus 22 ~i~e~~i~~~ad~l~~--~gl~~~Gy~~~~iDd--gW~------~--~-~~d~~G~~~~d~~kFP 73 (85)
.+|.+.|.+..+.++. .-.+++||+-|.|=. |+- . . ..|++|--..+..||+
T Consensus 130 ~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~ 194 (343)
T cd04734 130 AMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFL 194 (343)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHH
Confidence 4898888888886644 234669999999988 662 1 1 2366764444555663
No 73
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=36.85 E-value=32 Score=28.64 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHH--cCccccCceEEEeccccc
Q psy10252 24 SERLFRTMADLVVS--EGYAAVGYEYINIDDCWL 55 (85)
Q Consensus 24 ~e~~i~~~ad~l~~--~gl~~~Gy~~~~iDdgW~ 55 (85)
.++.+.+.|.+|.+ .-|.++|.++|+||+--.
T Consensus 577 ~~e~~~~iA~alr~Ev~~L~~aG~~~IQIDEPal 610 (766)
T PLN02475 577 RHETCYQIALAIKDEVEDLEKAGITVIQIDEAAL 610 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcch
Confidence 35666666666643 357889999999999543
No 74
>PLN02289 ribulose-bisphosphate carboxylase small chain
Probab=36.71 E-value=40 Score=23.28 Aligned_cols=21 Identities=5% Similarity=0.265 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHHHHcCcccc
Q psy10252 23 ISERLFRTMADLVVSEGYAAV 43 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~ 43 (85)
+|++.|.+|++.|.++|+...
T Consensus 76 LtdeqI~kQVeYli~~GW~pc 96 (176)
T PLN02289 76 LTDEELAKEVDYLLRNKWVPC 96 (176)
T ss_pred CCHHHHHHHHHHHHhCCCeee
Confidence 899999999999999998864
No 75
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=36.47 E-value=43 Score=25.09 Aligned_cols=53 Identities=6% Similarity=0.126 Sum_probs=36.1
Q ss_pred CcCCHHHHHHHHHHHHH--cCccccCceEEEeccccc-----------cCCCCCCCceeecCCCCC
Q psy10252 21 NCISERLFRTMADLVVS--EGYAAVGYEYINIDDCWL-----------DKTRSFNGRLQADAKRFP 73 (85)
Q Consensus 21 ~~i~e~~i~~~ad~l~~--~gl~~~Gy~~~~iDdgW~-----------~~~~d~~G~~~~d~~kFP 73 (85)
..+|++.|.+..+.++. .-.+++|++-|.|-.+-- ....|++|-=.-|..||+
T Consensus 147 ~~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~ 212 (362)
T PRK10605 147 RALELEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLV 212 (362)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHH
Confidence 35899999888886643 456779999999987541 122366765555666774
No 76
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=36.13 E-value=60 Score=24.69 Aligned_cols=44 Identities=23% Similarity=0.414 Sum_probs=28.1
Q ss_pred cccchhhhhccCCCCCCCCCcCCHHHHHHHHHHHHHcCccccCceEEEe
Q psy10252 2 GWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINI 50 (85)
Q Consensus 2 GW~SW~~~~~~~~~~~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~~~i 50 (85)
|++-|.+=..+.+....| ..-+.|++.+++.++.||+ .|. |..+
T Consensus 107 GF~lw~S~~t~~n~~~~~---pkrDiv~el~~A~rk~Glk-~G~-Y~S~ 150 (384)
T smart00812 107 GFCLWDSKYSNWNAVDTG---PKRDLVGELADAVRKRGLK-FGL-YHSL 150 (384)
T ss_pred CccccCCCCCCCcccCCC---CCcchHHHHHHHHHHcCCe-EEE-EcCH
Confidence 556665433232222211 2568899999999999998 777 5555
No 77
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=36.00 E-value=81 Score=18.21 Aligned_cols=47 Identities=21% Similarity=0.436 Sum_probs=27.6
Q ss_pred CCCCCcCCHHHHHHHHHHHHHcCccccCceEEEe-cc-ccccCCCCCCCc---eeecC
Q psy10252 17 NDPENCISERLFRTMADLVVSEGYAAVGYEYINI-DD-CWLDKTRSFNGR---LQADA 69 (85)
Q Consensus 17 ~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~~~i-Dd-gW~~~~~d~~G~---~~~d~ 69 (85)
..+...++.+.+++.+.. .|+ . .+-|-+ |+ +|+-..++++|+ +.+|+
T Consensus 23 ~p~~~~~~~~~~~~~l~~---~G~-~--v~~ve~~~~g~yev~~~~~dG~~~ev~vD~ 74 (83)
T PF13670_consen 23 APPADWLSIEQAVAKLEA---QGY-Q--VREVEFDDDGCYEVEARDKDGKKVEVYVDP 74 (83)
T ss_pred CCccccCCHHHHHHHHHh---cCC-c--eEEEEEcCCCEEEEEEEECCCCEEEEEEcC
Confidence 344456666666666553 344 2 356777 66 788655677776 44554
No 78
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=35.88 E-value=55 Score=24.54 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=35.2
Q ss_pred CcCCHHHHHHHHHHHHH--cCccccCceEEEecccc----------c-cCCCCCCCceeecCCCCC
Q psy10252 21 NCISERLFRTMADLVVS--EGYAAVGYEYINIDDCW----------L-DKTRSFNGRLQADAKRFP 73 (85)
Q Consensus 21 ~~i~e~~i~~~ad~l~~--~gl~~~Gy~~~~iDdgW----------~-~~~~d~~G~~~~d~~kFP 73 (85)
..+|++.|.+..+.++. .-.+++||+-|.|=.+- . ....|++|-=.-+..||+
T Consensus 138 ~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~ 203 (370)
T cd02929 138 REMDKDDIKRVRRWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFW 203 (370)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHH
Confidence 45899999888886643 34567999999998765 1 122356665555555664
No 79
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=35.86 E-value=59 Score=26.66 Aligned_cols=53 Identities=17% Similarity=0.280 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHcCccccCceEEEe--------ccccccCCCCCCCceeecCCCC--CCCHHHHHHHHhC
Q psy10252 24 SERLFRTMADLVVSEGYAAVGYEYINI--------DDCWLDKTRSFNGRLQADAKRF--PRGIADLSNYVST 85 (85)
Q Consensus 24 ~e~~i~~~ad~l~~~gl~~~Gy~~~~i--------DdgW~~~~~d~~G~~~~d~~kF--P~Gl~~l~~~ih~ 85 (85)
+-+...+.+..| +++||+.|.| |-+|=-. ..|-..| +++| |.+||.|+|..|+
T Consensus 163 ~~e~a~~llpYl-----~elG~T~IELMPv~e~p~~~sWGYq---~~g~yAp-~sryGtPedfk~fVD~aH~ 225 (628)
T COG0296 163 YFELAIELLPYL-----KELGITHIELMPVAEHPGDRSWGYQ---GTGYYAP-TSRYGTPEDFKALVDAAHQ 225 (628)
T ss_pred HHHHHHHHhHHH-----HHhCCCEEEEcccccCCCCCCCCCC---cceeccc-cccCCCHHHHHHHHHHHHH
Confidence 334455555555 5678888875 5656321 1333333 3477 6799999999995
No 80
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=35.28 E-value=80 Score=20.76 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHcCccccCceEEEecccc
Q psy10252 24 SERLFRTMADLVVSEGYAAVGYEYINIDDCW 54 (85)
Q Consensus 24 ~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW 54 (85)
.++.|.+..+.+...-++ ..++.+++|||=
T Consensus 8 ~~~~l~~~l~sl~~q~~~-~~~eiiVvDd~S 37 (219)
T cd06913 8 GEQWLDECLESVLQQDFE-GTLELSVFNDAS 37 (219)
T ss_pred cHHHHHHHHHHHHhCCCC-CCEEEEEEeCCC
Confidence 456777888877654333 248999999983
No 81
>PF06006 DUF905: Bacterial protein of unknown function (DUF905); InterPro: IPR009253 This family consists of several short hypothetical proteobacterial proteins of unknown function.; PDB: 2HJJ_A.
Probab=35.06 E-value=51 Score=19.45 Aligned_cols=52 Identities=25% Similarity=0.277 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCccccCceEEEecccccc----CCCCCCCceeecCCCC-CCCHHHHHHHHhC
Q psy10252 28 FRTMADLVVSEGYAAVGYEYINIDDCWLD----KTRSFNGRLQADAKRF-PRGIADLSNYVST 85 (85)
Q Consensus 28 i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~----~~~d~~G~~~~d~~kF-P~Gl~~l~~~ih~ 85 (85)
-+++|.+++ ++|.-|.|+|.=-. ..||.+|.++.-.-.| |.+-..|-.||++
T Consensus 9 tr~qA~aV~------a~y~NV~IeDdqg~HfRlvvRd~~g~mvWRaWNFEp~Ag~~LNryI~~ 65 (70)
T PF06006_consen 9 TREQAEAVA------AQYRNVFIEDDQGTHFRLVVRDTEGQMVWRAWNFEPDAGYWLNRYIRS 65 (70)
T ss_dssp -HHHHHHHH------HH-TTEEEES-SSS--EEEEE-SS--EEEEEESSSTTHHHHHHHHHTT
T ss_pred cHHHHHHHH------HHhcceeeccCCCCeEEEEEEcCCCcEEEEeeccCCcHHHHHHHHHHH
Confidence 356677654 35777777772111 1367889988777777 5556777777764
No 82
>PRK10645 divalent-cation tolerance protein CutA; Provisional
Probab=34.72 E-value=32 Score=21.81 Aligned_cols=58 Identities=16% Similarity=0.170 Sum_probs=37.4
Q ss_pred cCCHHHHHHHHHHHHHcCccccCceEEEecc------ccccCCCCCCCc----eeecCCCCCCCHHHHHHHHhC
Q psy10252 22 CISERLFRTMADLVVSEGYAAVGYEYINIDD------CWLDKTRSFNGR----LQADAKRFPRGIADLSNYVST 85 (85)
Q Consensus 22 ~i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDd------gW~~~~~d~~G~----~~~d~~kFP~Gl~~l~~~ih~ 85 (85)
+.+++.-++.|..|++.+|.+. ++|-. -|++.-.. ... +...+++|+. +...+..+|.
T Consensus 18 ~p~~e~A~~ia~~Lve~rLaAC----vni~p~i~S~Y~W~G~i~~-~~E~~l~iKT~~~~~~~-l~~~I~~~Hp 85 (112)
T PRK10645 18 APDEATAQDLAAKVLAEKLAAC----VTLLPGATSLYYWEGKLEQ-EYEVQMLLKTTVSHQQA-LLECLKSHHP 85 (112)
T ss_pred CCCHHHHHHHHHHHHHCCeeEE----EecCCCeeEEEEECCEEee-eeEEEEEEEeCHHHHHH-HHHHHHHhCC
Confidence 4589999999999999999976 55544 47653211 111 2233456666 6666666663
No 83
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=34.44 E-value=44 Score=23.87 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHcCccccCceEEEecccccc
Q psy10252 26 RLFRTMADLVVSEGYAAVGYEYINIDDCWLD 56 (85)
Q Consensus 26 ~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~ 56 (85)
..+...+++|. .|.+.|.||+ |-+
T Consensus 30 ss~~~y~~aL~------~GcRcvElD~-Wdg 53 (228)
T cd08599 30 SSTAPIIEALL------RGCRVIELDL-WPG 53 (228)
T ss_pred cCHHHHHHHHH------hCCCEEEEEe-ecC
Confidence 33555666653 5788999997 765
No 84
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=34.41 E-value=53 Score=21.26 Aligned_cols=31 Identities=13% Similarity=0.292 Sum_probs=21.0
Q ss_pred CCcCCHHHHHHHHHHHHHcCccccCceEEEecc
Q psy10252 20 ENCISERLFRTMADLVVSEGYAAVGYEYINIDD 52 (85)
Q Consensus 20 ~~~i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDd 52 (85)
+..+|++.+.+.++. +.+|...+=+||.+|-
T Consensus 81 d~~Ls~eEf~~L~~~--~~~LV~~rg~WV~ld~ 111 (141)
T PF12419_consen 81 DEELSEEEFEQLVEQ--KRPLVRFRGRWVELDP 111 (141)
T ss_pred CEECCHHHHHHHHHc--CCCeEEECCEEEEECH
Confidence 455899999988875 4455555556666664
No 85
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=34.16 E-value=41 Score=24.41 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHH--cCccccCceEEEeccc-cc
Q psy10252 25 ERLFRTMADLVVS--EGYAAVGYEYINIDDC-WL 55 (85)
Q Consensus 25 e~~i~~~ad~l~~--~gl~~~Gy~~~~iDdg-W~ 55 (85)
++.+...|+.+.. .-|.++|.++|+||+- |.
T Consensus 147 ~el~~~la~~~~~e~~~l~~aG~~~iQiDEP~l~ 180 (332)
T cd03311 147 EELAMDLALALREEIRDLYDAGCRYIQIDEPALA 180 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEeecchhh
Confidence 3445555554432 2467789999999995 43
No 86
>COG4451 RbcS Ribulose bisphosphate carboxylase small subunit [Energy production and conversion]
Probab=32.71 E-value=62 Score=21.19 Aligned_cols=25 Identities=24% Similarity=0.660 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEE
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYI 48 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~ 48 (85)
++.+.+.+|+..|.+.|.+ .|.+|+
T Consensus 19 Ltd~qi~~QVrylL~QGyk-igvE~~ 43 (127)
T COG4451 19 LTDEQIAEQVRYLLSQGYK-IGVEYV 43 (127)
T ss_pred CcHHHHHHHHHHHHhCCcc-cceeec
Confidence 8899999999999999988 577775
No 87
>cd04469 S1_Hex1 S1_Hex1: Hex1, S1-like RNA-binding domain. Hex1 protein is the major component of the Woronin body in filamentous fungi. The Woronin body is a dense vesicle and plays a vital role in filamentous fungi cell integrity. When cell damage occurs, Woronin bodies seal the septal pore to prevent further cytoplasmic bleeding. Hex1 protein self-assembles to form the solid core of the Woronin body vesicle. The Hex1 sequence and structure are similar to eukaryotic initiation factor 5A (eIF5A), suggesting they share a common ancestor during evolution. All members of the EF superfamily to which Hex1 belongs, contain an S1 domain, which has been shown to bind RNA or single-stranded DNA and often interacts with the ribosome.
Probab=32.41 E-value=51 Score=19.58 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=22.1
Q ss_pred ceEEEeccccccCCCCCCCceeecCCCCC-CCHHHHHHHH
Q psy10252 45 YEYINIDDCWLDKTRSFNGRLQADAKRFP-RGIADLSNYV 83 (85)
Q Consensus 45 y~~~~iDdgW~~~~~d~~G~~~~d~~kFP-~Gl~~l~~~i 83 (85)
|..+.||||.-. -.+.+|+..-|= +.| .| .|...|
T Consensus 5 YqLidI~DG~ls-LM~e~G~~kdDl-~lP~~~--~l~~~I 40 (75)
T cd04469 5 YRVLDIQDGSIV-AMTETGDVKQGL-PVIDQS--NLWTRL 40 (75)
T ss_pred EEEEEecCCeEE-EEcCCCCcccCc-cCCCcc--hHHHHH
Confidence 678889888865 345567665553 567 54 555554
No 88
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=32.30 E-value=41 Score=18.48 Aligned_cols=24 Identities=17% Similarity=0.603 Sum_probs=16.7
Q ss_pred cccchhhhhccCCCCCCCCCcCCHHHHHHHHHHH
Q psy10252 2 GWLAWERFRCNTDCKNDPENCISERLFRTMADLV 35 (85)
Q Consensus 2 GW~SW~~~~~~~~~~~~~~~~i~e~~i~~~ad~l 35 (85)
-|+.|-+|.... ++++ +++....+
T Consensus 19 dWd~wvSf~GrP---------ltde-vK~a~k~i 42 (49)
T PF06543_consen 19 DWDKWVSFDGRP---------LTDE-VKEAMKLI 42 (49)
T ss_pred chHHheeeCCee---------CCHH-HHHHHHHH
Confidence 489999987652 7776 66666554
No 89
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=32.13 E-value=63 Score=22.99 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEecc-ccccC
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDD-CWLDK 57 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDd-gW~~~ 57 (85)
-+++.+.+.|..|++ .|-++|++|| |+...
T Consensus 162 ~~~~~l~~Aa~~L~~-----~gadlIvLDCmGYt~~ 192 (221)
T PF07302_consen 162 GDEEELAAAARELAE-----QGADLIVLDCMGYTQE 192 (221)
T ss_pred CCHHHHHHHHHHHHh-----cCCCEEEEECCCCCHH
Confidence 378889999988754 5668999999 77653
No 90
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=31.99 E-value=81 Score=25.95 Aligned_cols=49 Identities=16% Similarity=0.189 Sum_probs=33.0
Q ss_pred HHHHHcCccccCceEEEeccccccCCCCCCCceeecCCCCCCCHHHHHHHH
Q psy10252 33 DLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRFPRGIADLSNYV 83 (85)
Q Consensus 33 d~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~~~i 83 (85)
.+|.+.-|-..+.+|++-|+-=.-.+ ..+|++.++. +|++||..+++.-
T Consensus 336 ~Al~A~~l~~~d~dYiV~d~~V~ivD-~~TGR~~~gr-~w~~GLhQaieaK 384 (656)
T PRK12898 336 QALSALHLFRRDEHYIVRDGKVVIVD-EFTGRVMPDR-SWEDGLHQMIEAK 384 (656)
T ss_pred HHHHHHHHHhcCCceEEECCeEEEEE-CCCCeECCCC-CcChHHHHHHHHh
Confidence 34444445556788998876444322 2469988875 9999998887643
No 91
>COG1878 Kynurenine formamidase [Amino acid transport and metabolism]
Probab=31.86 E-value=26 Score=24.73 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCccccCceEEEecccc
Q psy10252 29 RTMADLVVSEGYAAVGYEYINIDDCW 54 (85)
Q Consensus 29 ~~~ad~l~~~gl~~~Gy~~~~iDdgW 54 (85)
.+.|+.|++++++..|.+++.+|..=
T Consensus 135 ~eaa~~L~e~~VkaVGiDt~s~d~~~ 160 (218)
T COG1878 135 IEAAEYLIERGVKAVGIDTPSTDPGL 160 (218)
T ss_pred HHHHHHHHHcCCeEEEecCCccCccc
Confidence 34566677789999999999998763
No 92
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=31.83 E-value=1e+02 Score=19.11 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHcCccccCceEEEecccccc
Q psy10252 24 SERLFRTMADLVVSEGYAAVGYEYINIDDCWLD 56 (85)
Q Consensus 24 ~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~ 56 (85)
+|+.+++..+.+.+.|+. -+++.|.|+..
T Consensus 59 ~e~~L~~l~~~a~~~gl~----~~~i~Dag~Te 87 (116)
T PF01981_consen 59 SEEELLELAKKAKEAGLP----HYLIRDAGRTE 87 (116)
T ss_dssp SHHHHHHHHHHHHHTT-S----EEEEEETSSSS
T ss_pred CHHHHHHHHHHHHHCCCC----EEEEEECCCCc
Confidence 799999999988887776 36888999864
No 93
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=31.81 E-value=43 Score=27.77 Aligned_cols=30 Identities=27% Similarity=0.246 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHH--cCccccCceEEEecccc
Q psy10252 25 ERLFRTMADLVVS--EGYAAVGYEYINIDDCW 54 (85)
Q Consensus 25 e~~i~~~ad~l~~--~gl~~~Gy~~~~iDdgW 54 (85)
++.+.+.|.++.+ .-|.++|.++|+||+--
T Consensus 573 ~e~~~dlA~al~~Ev~~L~~aG~~~IQiDEPa 604 (758)
T PRK05222 573 EETARQIALAIRDEVLDLEAAGIKIIQIDEPA 604 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEeeCch
Confidence 5555666665533 35778999999999943
No 94
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=31.75 E-value=43 Score=24.31 Aligned_cols=50 Identities=12% Similarity=0.207 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCccccCceEEEeccccccCCCCC---CCceeecCCCCCCCHHHHHHH
Q psy10252 26 RLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSF---NGRLQADAKRFPRGIADLSNY 82 (85)
Q Consensus 26 ~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~---~G~~~~d~~kFP~Gl~~l~~~ 82 (85)
..+....++|. .|.+.|.||+ |-+..... .|.-...+..|=+.++++.+|
T Consensus 30 ss~~~y~~aL~------~GcRcvElD~-Wdg~~~eP~V~HG~t~ts~i~f~dv~~~I~~~ 82 (254)
T cd08628 30 SSTEAYIRCLR------MGCRCIELDC-WDGPDGKPIIYHGWTRTTKIKFDDVVQAIKDH 82 (254)
T ss_pred CCHHHHHHHHH------cCCcEEEEEe-ecCCCCCeEEeeCCCccCCcCHHHHHHHHHHH
Confidence 33455555552 5889999997 86532111 144444444554555555444
No 95
>cd06596 GH31_CPE1046 CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain. The domain architecture of CPE1046 and its orthologs includes a C-terminal fibronectin type 3 (FN3) domain and a coagulation factor 5/8 type C domain in addition to the GH31 domain. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=31.64 E-value=58 Score=23.80 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCCCCceeecCCCCCCCHHHHHHHHhC
Q psy10252 24 SERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRFPRGIADLSNYVST 85 (85)
Q Consensus 24 ~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~~~ih~ 85 (85)
++..+++.+|..++..++ +| +|+-+||+... . .-|+.+++++|+
T Consensus 43 ~~~~a~~~~~~y~~~~~p-lg--w~lpndgyg~~------y---------~~l~~~~~~~~~ 86 (261)
T cd06596 43 TTDDARKVADKYKENDMP-LG--WMLPNDGYGCG------Y---------ENLKEVVDYLHA 86 (261)
T ss_pred chhhHHHHHHHHHhcCCC-ce--eeccCCCCcch------H---------HHHHHHHHHHHH
Confidence 456688999988887776 44 68899988742 1 227777777663
No 96
>PRK03745 signal recognition particle protein Srp19; Provisional
Probab=31.47 E-value=71 Score=20.02 Aligned_cols=57 Identities=11% Similarity=0.280 Sum_probs=30.3
Q ss_pred cCCHHHHHHHHHHHHHcCccccCceEEEecc--ccccC-----CCCCCCceeecCCCCCCC--HHHHHHHHh
Q psy10252 22 CISERLFRTMADLVVSEGYAAVGYEYINIDD--CWLDK-----TRSFNGRLQADAKRFPRG--IADLSNYVS 84 (85)
Q Consensus 22 ~i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDd--gW~~~-----~~d~~G~~~~d~~kFP~G--l~~l~~~ih 84 (85)
+|..-.+.+.++++.+ +|++++.++. .+-.. .-...|+..++. ..+.. |+.++++|.
T Consensus 28 aV~~P~~~EI~~a~~~-----lgl~~~~~E~~K~yPr~~g~~~~~~~~Grv~V~~-~~~K~~ll~~Ia~~ik 93 (100)
T PRK03745 28 AVERPTLEEIVDAAEA-----LGFKVIEVDREKLNPRLSGIDEELRTRGRIVIES-PYGKSKSLKMIAQKIR 93 (100)
T ss_pred cccCCCHHHHHHHHHH-----cCCCcEeeccCCCCCCccCCccchhcCCEEEecC-CCCHHHHHHHHHHHHH
Confidence 3444457777777654 5666766663 22211 011258888854 33432 566666654
No 97
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=30.81 E-value=93 Score=20.11 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHHcCccccCceEEEeccc
Q psy10252 24 SERLFRTMADLVVSEGYAAVGYEYINIDDC 53 (85)
Q Consensus 24 ~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdg 53 (85)
.++.|.+..+.+.+.-.+.--++.++||||
T Consensus 8 ~~~~l~~~l~sl~~q~~~~~~~eiivvdd~ 37 (229)
T cd04192 8 EAENLPRLLQSLSALDYPKEKFEVILVDDH 37 (229)
T ss_pred cHHHHHHHHHHHHhCCCCCCceEEEEEcCC
Confidence 345577777777654433222789999998
No 98
>PF04079 DUF387: Putative transcriptional regulators (Ypuh-like); InterPro: IPR005234 This family represents ScpB, which along with ScpA (IPR003768 from INTERPRO) interacts with SMC in vivo forming a complex that is required for chromosome condensation and segregation [, ]. The SMC-Scp complex appears to be similar to the MukB-MukE-Muk-F complex in Escherichia coli [], where MukB (IPR007406 from INTERPRO) is the homologue of SMC. ScpA and ScpB have little sequence similarity to MukE (IPR007385 from INTERPRO) or MukF (IPR005582 from INTERPRO), they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. In general scpA and scpB form an operon in most bacterial genomes. Flanking genes are highly variable suggesting that the operon has moved throughout evolution. Bacteria containing an smc gene also contain scpA or scpB but not necessarily both. An exception is found in Deinococcus radiodurans, which contains scpB but neither smc nor scpA. In the archaea the gene order SMC-ScpA is conserved in nearly all species, as is the very short distance between the two genes, indicating co-transcription of the both in different archaeal genera and arguing that interaction of the gene products is not confined to the homologues in Bacillus subtilis. It would seem probable that, in light of all the studies, SMC, ScpA and ScpB proteins or homologues act together in chromosome condensation and segregation in all prokaryotes []. ; GO: 0051304 chromosome separation; PDB: 1T6S_B 2Z99_A.
Probab=30.61 E-value=81 Score=21.07 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHHcCc--cccCceEEEeccccccC
Q psy10252 24 SERLFRTMADLVVSEGY--AAVGYEYINIDDCWLDK 57 (85)
Q Consensus 24 ~e~~i~~~ad~l~~~gl--~~~Gy~~~~iDdgW~~~ 57 (85)
+++.|.+..+.|.+ -+ .+.|++.+.+++||+=.
T Consensus 25 ~~~~v~~~l~~L~~-~y~~~~~gl~l~~~~~~y~l~ 59 (159)
T PF04079_consen 25 SEDEVEEALEELQE-EYNEEDRGLELVEVGGGYRLQ 59 (159)
T ss_dssp -HHHHHHHHHHHHH-HHHHCT-SEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHH-HhccCCCCEEEEEECCEEEEE
Confidence 45666666666654 24 67899999999999843
No 99
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=30.20 E-value=58 Score=24.19 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=35.1
Q ss_pred CcCCHHHHHHHHHHHHH--cCccccCceEEEecccc--------c---cCCCCCCCceeecCCCCC
Q psy10252 21 NCISERLFRTMADLVVS--EGYAAVGYEYINIDDCW--------L---DKTRSFNGRLQADAKRFP 73 (85)
Q Consensus 21 ~~i~e~~i~~~ad~l~~--~gl~~~Gy~~~~iDdgW--------~---~~~~d~~G~~~~d~~kFP 73 (85)
..+|++.|.+..+.++. .-.+++||+-|.|=.+- + ....|++|--.-+..||+
T Consensus 130 ~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~ 195 (337)
T PRK13523 130 VEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFL 195 (337)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHH
Confidence 35899999998887643 34567899999998773 2 122355654355555664
No 100
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=29.88 E-value=58 Score=27.05 Aligned_cols=18 Identities=39% Similarity=0.479 Sum_probs=14.7
Q ss_pred CccccCceEEEecccccc
Q psy10252 39 GYAAVGYEYINIDDCWLD 56 (85)
Q Consensus 39 gl~~~Gy~~~~iDdgW~~ 56 (85)
.|.++|.++|+||+--..
T Consensus 192 ~L~~aG~~~IQiDEP~l~ 209 (758)
T PRK05222 192 ELAAAGAEWVQIDEPALV 209 (758)
T ss_pred HHHHCCCCEEEeeCchhh
Confidence 488899999999996543
No 101
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=29.42 E-value=56 Score=24.78 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=13.2
Q ss_pred cCceEEEeccccccC
Q psy10252 43 VGYEYINIDDCWLDK 57 (85)
Q Consensus 43 ~Gy~~~~iDdgW~~~ 57 (85)
.|.+.|++|||-|..
T Consensus 140 ~~~diIi~DDG~Qh~ 154 (336)
T COG1663 140 LGCDIIVLDDGLQHY 154 (336)
T ss_pred CCCCEEEEcCcchhh
Confidence 688999999999964
No 102
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=29.20 E-value=62 Score=23.81 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHHc--CccccCceEEEeccccc
Q psy10252 24 SERLFRTMADLVVSE--GYAAVGYEYINIDDCWL 55 (85)
Q Consensus 24 ~e~~i~~~ad~l~~~--gl~~~Gy~~~~iDdgW~ 55 (85)
-++.+.+.|++|.+. -|.+ |.++|+||+---
T Consensus 152 ~e~l~~~~a~~l~~e~~~L~~-G~~~IQiDEP~L 184 (326)
T PRK08575 152 LIELMEDYASVVNSLIKELSS-VVDAVEIHEPSI 184 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCCEEEecCcce
Confidence 567777777777542 2333 899999999544
No 103
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=29.09 E-value=1.1e+02 Score=22.69 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=12.8
Q ss_pred cCceEEEeccccccC
Q psy10252 43 VGYEYINIDDCWLDK 57 (85)
Q Consensus 43 ~Gy~~~~iDdgW~~~ 57 (85)
.+.+.|++|||-|..
T Consensus 120 ~~~dviilDDGfQh~ 134 (311)
T TIGR00682 120 LDPDVIILDDGLQHR 134 (311)
T ss_pred CCCCEEEECCCCcCc
Confidence 468999999999964
No 104
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=28.69 E-value=1.2e+02 Score=19.75 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHcCccccCceEEEeccccc
Q psy10252 26 RLFRTMADLVVSEGYAAVGYEYINIDDCWL 55 (85)
Q Consensus 26 ~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~ 55 (85)
+.+++..+.+...-..+..|+.+++||+=.
T Consensus 15 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~ 44 (234)
T cd06421 15 EIVRKTLRAALAIDYPHDKLRVYVLDDGRR 44 (234)
T ss_pred HHHHHHHHHHHhcCCCcccEEEEEEcCCCc
Confidence 456677777765444433479999999843
No 105
>smart00674 CENPB Putative DNA-binding domain in centromere protein B, mouse jerky and transposases.
Probab=28.46 E-value=30 Score=18.95 Aligned_cols=30 Identities=27% Similarity=0.446 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEecccccc
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDCWLD 56 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~ 56 (85)
||...|++.|..|... .|.+-+....||-.
T Consensus 25 it~~~i~~~A~~i~~~----~~~~~f~~s~~Wl~ 54 (66)
T smart00674 25 ISGEQIREKALEILQR----LGLENFKASNGWLT 54 (66)
T ss_pred CCHHHHHHHHHHHHHH----cCCCCCCCCHHHHH
Confidence 8999999999998652 34345666667753
No 106
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=28.37 E-value=53 Score=24.53 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHH--cCccccCceEEEecc-cccc
Q psy10252 24 SERLFRTMADLVVS--EGYAAVGYEYINIDD-CWLD 56 (85)
Q Consensus 24 ~e~~i~~~ad~l~~--~gl~~~Gy~~~~iDd-gW~~ 56 (85)
.++.+.+.|.++.+ .-|.++|.++++||+ -|..
T Consensus 149 ~~el~~~iA~al~~ev~~l~~agi~~iQiDEpal~~ 184 (330)
T COG0620 149 REELAKDIALALRDEVKDLEDAGIKIIQIDEPALRE 184 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEeechhhhhc
Confidence 45556666665533 357889999999999 5654
No 107
>PRK00957 methionine synthase; Provisional
Probab=28.08 E-value=63 Score=23.24 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHH--cCccccCceEEEeccc-cc
Q psy10252 25 ERLFRTMADLVVS--EGYAAVGYEYINIDDC-WL 55 (85)
Q Consensus 25 e~~i~~~ad~l~~--~gl~~~Gy~~~~iDdg-W~ 55 (85)
++.+.+.++.+.. .-|.++|.++|+||+- |.
T Consensus 136 ~~~~~dla~~~~~~i~~l~~~G~~~IqiDEP~l~ 169 (305)
T PRK00957 136 EELIYDLARALRKEAEALEKAGVAMIQIDEPILS 169 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEecChhhh
Confidence 5556555554432 2467789999999994 54
No 108
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=27.77 E-value=77 Score=19.70 Aligned_cols=19 Identities=11% Similarity=0.375 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHHHHcCcc
Q psy10252 23 ISERLFRTMADLVVSEGYA 41 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~ 41 (85)
++++.|.++++.|.+.|.+
T Consensus 11 l~~~~i~~Qv~~ll~qG~~ 29 (99)
T PF00101_consen 11 LTDEEIAKQVRYLLSQGWI 29 (99)
T ss_dssp --HHHHHHHHHHHHHTT-E
T ss_pred CCHHHHHHHHHhhhhcCce
Confidence 7899999999999888776
No 109
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=27.73 E-value=28 Score=20.07 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=12.0
Q ss_pred ccccCceEEEeccccc
Q psy10252 40 YAAVGYEYINIDDCWL 55 (85)
Q Consensus 40 l~~~Gy~~~~iDdgW~ 55 (85)
|+.+||+..+|++|+.
T Consensus 71 L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 71 LTQNGFKVKNLDGGYK 86 (90)
T ss_pred HHHCCCCEEEecCCHH
Confidence 4556777888999875
No 110
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=27.73 E-value=1.3e+02 Score=19.02 Aligned_cols=29 Identities=17% Similarity=0.076 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHHcCccccCceEEEecccccc
Q psy10252 24 SERLFRTMADLVVSEGYAAVGYEYINIDDCWLD 56 (85)
Q Consensus 24 ~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~ 56 (85)
+|+.+++.++.+.+.|+. -+++.|+|-..
T Consensus 58 ~~~~l~~l~~~a~~~gl~----~~~v~DAG~Tq 86 (115)
T cd02407 58 SEEELLELAKKAKELGLP----HSLIQDAGRTQ 86 (115)
T ss_pred CHHHHHHHHHHHHHcCCC----eEEEEECCCcc
Confidence 678899999888776665 37888988754
No 111
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=27.58 E-value=26 Score=18.98 Aligned_cols=9 Identities=33% Similarity=0.652 Sum_probs=6.1
Q ss_pred eEEEecccc
Q psy10252 46 EYINIDDCW 54 (85)
Q Consensus 46 ~~~~iDdgW 54 (85)
+|++-|-|-
T Consensus 30 ~ymiYdYC~ 38 (51)
T PF06955_consen 30 NYMIYDYCT 38 (51)
T ss_dssp HCEEEEGGG
T ss_pred cCeEecccC
Confidence 477777764
No 112
>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase. This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.
Probab=27.51 E-value=1.3e+02 Score=19.06 Aligned_cols=30 Identities=13% Similarity=-0.092 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEecccccc
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDCWLD 56 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~ 56 (85)
-+++.+++.++...+.|+. .+++-|+|-..
T Consensus 57 ~~~~el~~l~~~a~~~~l~----~~~v~DAG~Te 86 (115)
T TIGR00283 57 NSLEELLEIYHKAESLGLV----TGLIRDAGHTQ 86 (115)
T ss_pred CCHHHHHHHHHHHHHcCCC----EEEEEcCCcce
Confidence 4889999999888776665 36777888754
No 113
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=26.82 E-value=1.4e+02 Score=18.85 Aligned_cols=29 Identities=14% Similarity=0.058 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHcCccccCceEEEecccccc
Q psy10252 24 SERLFRTMADLVVSEGYAAVGYEYINIDDCWLD 56 (85)
Q Consensus 24 ~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~ 56 (85)
|++.+++.++.+.+.|+. -+++-|+|-..
T Consensus 56 ~~~el~~l~~~a~~~~l~----~~~v~DAG~Te 84 (113)
T PRK04322 56 SEEELLELKEKAERLGLP----TALIRDAGLTQ 84 (113)
T ss_pred CHHHHHHHHHHHHHcCCC----EEEEEeCCCcc
Confidence 688899999888776665 36777888653
No 114
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=26.56 E-value=1.5e+02 Score=18.80 Aligned_cols=30 Identities=17% Similarity=0.028 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEecccccc
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDCWLD 56 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~ 56 (85)
-+++.+++.++.+.+.|+. -+++-|+|-..
T Consensus 57 ~~~~el~~l~~~a~~~~l~----~~~v~DAG~Te 86 (115)
T cd02430 57 NSEEELLELKKKAKSLGLP----TSLIQDAGRTQ 86 (115)
T ss_pred CCHHHHHHHHHHHHHcCCC----eEEEEeCCCcc
Confidence 4888899999988776665 35667888743
No 115
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=26.51 E-value=1.1e+02 Score=25.94 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=34.6
Q ss_pred HHHHHHHHHHcCccccCceEEEeccccccCCCCCCCceeecCCCCCCCHHHHHHH
Q psy10252 28 FRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRFPRGIADLSNY 82 (85)
Q Consensus 28 i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~~~ 82 (85)
+.....+|.+.-+-..+.+|++.|+-=.-.+ ..+|++.++. +|.+||..++..
T Consensus 298 ~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD-~~TGR~~~gr-~ws~GLHQaiea 350 (796)
T PRK12906 298 AHHIDQALRANYIMLKDIDYVVQDGEVLIVD-EFTGRVMEGR-RYSDGLHQAIEA 350 (796)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEECCEEEEEe-CCCCCcCCCC-ccChHHHHHHHH
Confidence 4444445555445556788998876433211 2469999886 999999887764
No 116
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=26.45 E-value=71 Score=23.68 Aligned_cols=53 Identities=13% Similarity=0.205 Sum_probs=34.2
Q ss_pred CcCCHHHHHHHHHHHHH--cCccccCceEEEecccc--------c---cCCCCCCCceeecCCCCC
Q psy10252 21 NCISERLFRTMADLVVS--EGYAAVGYEYINIDDCW--------L---DKTRSFNGRLQADAKRFP 73 (85)
Q Consensus 21 ~~i~e~~i~~~ad~l~~--~gl~~~Gy~~~~iDdgW--------~---~~~~d~~G~~~~d~~kFP 73 (85)
..+|.+.|.+..+.++. .-.+++|++-|.|=.+- + ....|++|--..|..||+
T Consensus 132 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~ 197 (353)
T cd04735 132 RELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFP 197 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHH
Confidence 45888888888886643 34567899999998753 2 112356643344666774
No 117
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=26.17 E-value=67 Score=25.47 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=19.0
Q ss_pred EEeccccccCCCCCCCceeecCCCCCCCHHHHHHHHh
Q psy10252 48 INIDDCWLDKTRSFNGRLQADAKRFPRGIADLSNYVS 84 (85)
Q Consensus 48 ~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~~~ih 84 (85)
+.||||| |++++-. .|++ ...|++.|.
T Consensus 5 ~~~~~~~--------~~~~~~~-~~~~-~~~~~~~~~ 31 (547)
T TIGR03103 5 VVIDCGW--------GRLLFGQ-TFSD-PQELAEALR 31 (547)
T ss_pred ceEeccc--------cceEeec-ccCC-HHHHHHHHH
Confidence 5699999 4455543 7877 777777664
No 118
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=25.97 E-value=1.1e+02 Score=19.44 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHcCccccCceEEEecccccc
Q psy10252 25 ERLFRTMADLVVSEGYAAVGYEYINIDDCWLD 56 (85)
Q Consensus 25 e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~ 56 (85)
++.+.+..+.+.+.-.. .++.+++|||-..
T Consensus 10 ~~~l~~~l~sl~~q~~~--~~eiiVvddgS~d 39 (214)
T cd04196 10 EKYLREQLDSILAQTYK--NDELIISDDGSTD 39 (214)
T ss_pred HHHHHHHHHHHHhCcCC--CeEEEEEeCCCCC
Confidence 34566666666543222 4799999998764
No 119
>PF14955 MRP-S24: Mitochondrial ribosome subunit S24
Probab=25.82 E-value=24 Score=23.42 Aligned_cols=10 Identities=20% Similarity=0.770 Sum_probs=7.7
Q ss_pred cccchhhhhc
Q psy10252 2 GWLAWERFRC 11 (85)
Q Consensus 2 GW~SW~~~~~ 11 (85)
||+||+.-..
T Consensus 34 sW~S~~T~nL 43 (136)
T PF14955_consen 34 SWNSWHTSNL 43 (136)
T ss_pred eecccccccc
Confidence 7999997543
No 120
>cd04468 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain. eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed.
Probab=25.71 E-value=75 Score=18.52 Aligned_cols=36 Identities=31% Similarity=0.626 Sum_probs=23.1
Q ss_pred ceEEEeccccccCCCCCCCceeecCCCCCCCHHHHHHHHh
Q psy10252 45 YEYINIDDCWLDKTRSFNGRLQADAKRFPRGIADLSNYVS 84 (85)
Q Consensus 45 y~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~~~ih 84 (85)
|..+.||+|.-. -.+..|+..-| -+.|.| .|.+.|.
T Consensus 6 YqLidI~dGfls-Lm~e~G~~k~D-lklP~~--elg~~I~ 41 (69)
T cd04468 6 YQLIDIDDGFLS-LMDDDGETRED-LKLPEG--ELGKEIR 41 (69)
T ss_pred EEEEeecCCeEE-EEcCCCCcccC-CcCCcH--HHHHHHH
Confidence 788999887754 34445665544 367763 6666664
No 121
>PF07631 PSD4: Protein of unknown function (DUF1592); InterPro: IPR013042 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013043 from INTERPRO.
Probab=25.68 E-value=14 Score=23.88 Aligned_cols=45 Identities=18% Similarity=0.317 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHcCccccCceEEEec--cccccCCCCCCCceeecCCCCCC
Q psy10252 24 SERLFRTMADLVVSEGYAAVGYEYINID--DCWLDKTRSFNGRLQADAKRFPR 74 (85)
Q Consensus 24 ~e~~i~~~ad~l~~~gl~~~Gy~~~~iD--dgW~~~~~d~~G~~~~d~~kFP~ 74 (85)
+.+.+.++|++|.+. -..+.++-+ .-|-. -+..+...+|+++||.
T Consensus 34 ~~~~l~~q~~RML~d----pr~~~~~~~F~~qWL~--l~~~~~~~~d~~~~p~ 80 (128)
T PF07631_consen 34 TPEQLRAQAERMLAD----PRARRFVERFFRQWLD--LDRLDSIVKDPEKFPE 80 (128)
T ss_pred CHHHHHHHHHHHHcC----ccHHHHHHHHHHHHhC--CCcccccCCChhhccc
Confidence 788999999998652 111111111 13432 2346888899999987
No 122
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=25.52 E-value=1e+02 Score=25.88 Aligned_cols=52 Identities=15% Similarity=0.244 Sum_probs=33.3
Q ss_pred HHHHHHHHHcCccccCceEEEeccccccCCCCCCCceeecCCCCCCCHHHHHHH
Q psy10252 29 RTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRFPRGIADLSNY 82 (85)
Q Consensus 29 ~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~~~ 82 (85)
.....+|.+.-+-..+.+|++.|+-=.-.+ ..+|+..++. +|++||..+++.
T Consensus 264 ~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD-~~TGR~~~gr-~ws~GLhQaiEa 315 (745)
T TIGR00963 264 HYINNALKAKELFEKDVDYIVRDGEVVIVD-EFTGRIMEGR-RWSDGLHQAIEA 315 (745)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECCEEEEEE-CCCCcCCCCC-ccchHHHHHHHH
Confidence 334445555444556788888776433221 2369999875 999999887653
No 123
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=25.49 E-value=83 Score=19.19 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHHcCccc
Q psy10252 23 ISERLFRTMADLVVSEGYAA 42 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~ 42 (85)
||.+.|.+.|+.|...|-+.
T Consensus 1 IT~e~V~~Aa~~L~~~G~~p 20 (120)
T PF11740_consen 1 ITYEDVIEAADELLAAGKKP 20 (120)
T ss_pred CcHHHHHHHHHHHHHcCCCC
Confidence 68888999999998877543
No 124
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=25.22 E-value=1.4e+02 Score=18.35 Aligned_cols=34 Identities=18% Similarity=0.348 Sum_probs=26.2
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHcCccccCceEEEecccc
Q psy10252 16 KNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCW 54 (85)
Q Consensus 16 ~~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW 54 (85)
++.|.+.|...++.+.++.+.. .+.+.|++|+-=
T Consensus 34 ~~~p~~~iG~GK~eei~~~~~~-----~~~d~vvfd~~L 67 (95)
T PF13167_consen 34 KPDPKTYIGSGKVEEIKELIEE-----LDADLVVFDNEL 67 (95)
T ss_pred CCCcceeechhHHHHHHHHHhh-----cCCCEEEECCCC
Confidence 4578888999999998887643 466889999753
No 125
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=25.20 E-value=99 Score=21.09 Aligned_cols=33 Identities=15% Similarity=0.070 Sum_probs=23.6
Q ss_pred CH--HHHHHHHHHHHHcCcc--------ccCceEEEecccccc
Q psy10252 24 SE--RLFRTMADLVVSEGYA--------AVGYEYINIDDCWLD 56 (85)
Q Consensus 24 ~e--~~i~~~ad~l~~~gl~--------~~Gy~~~~iDdgW~~ 56 (85)
|| +.|.+..+.+.+.-.+ .--++.++||||=.+
T Consensus 7 NE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d 49 (244)
T cd04190 7 NEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK 49 (244)
T ss_pred cCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc
Confidence 55 4688888888776555 224789999998764
No 126
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=24.99 E-value=1e+02 Score=22.09 Aligned_cols=33 Identities=6% Similarity=0.199 Sum_probs=25.5
Q ss_pred CcCCHHHHHHHHHHHHH--cCccccCceEEEeccc
Q psy10252 21 NCISERLFRTMADLVVS--EGYAAVGYEYINIDDC 53 (85)
Q Consensus 21 ~~i~e~~i~~~ad~l~~--~gl~~~Gy~~~~iDdg 53 (85)
..+|++.|.+..+.+++ .-.+++|++-|.|-.+
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~ 163 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGA 163 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcch
Confidence 45899999988887644 3456789999999875
No 127
>PRK10018 putative glycosyl transferase; Provisional
Probab=24.92 E-value=1.2e+02 Score=21.70 Aligned_cols=30 Identities=27% Similarity=0.481 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHHcCccccCceEEEeccccc
Q psy10252 24 SERLFRTMADLVVSEGYAAVGYEYINIDDCWL 55 (85)
Q Consensus 24 ~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~ 55 (85)
.++.+.+..+.+.+.-.. -++.+++|||=.
T Consensus 16 ~~~~l~~~l~Svl~Qt~~--~~EiIVVDDgS~ 45 (279)
T PRK10018 16 RQQLAIRAIKSVLRQDYS--NWEMIIVDDCST 45 (279)
T ss_pred CHHHHHHHHHHHHhCCCC--CeEEEEEECCCC
Confidence 455566666666543333 379999999743
No 128
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=24.86 E-value=79 Score=22.64 Aligned_cols=52 Identities=13% Similarity=0.212 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCC---CCceeecCCCCCCCHHHHHHH
Q psy10252 24 SERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSF---NGRLQADAKRFPRGIADLSNY 82 (85)
Q Consensus 24 ~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~---~G~~~~d~~kFP~Gl~~l~~~ 82 (85)
++..+....++|. .|.+.|.||+ |-+..... .|.....+..|=+.++++.+|
T Consensus 28 ~~ss~~~y~~aL~------~GcRcvElD~-wdg~~~ep~V~HG~t~ts~i~f~dv~~~Ik~~ 82 (231)
T cd08598 28 GDSSVEGYIRALQ------RGCRCVEIDV-WDGDDGEPVVTHGYTLTSSVPFRDVCRAIKKY 82 (231)
T ss_pred CccCHHHHHHHHH------hCCcEEEEEe-ecCCCCCcEEeeCCCCcCceEHHHHHHHHHHH
Confidence 3444555555552 4788999987 76532111 244344444444444444444
No 129
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=24.63 E-value=83 Score=21.46 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHHcCcc
Q psy10252 24 SERLFRTMADLVVSEGYA 41 (85)
Q Consensus 24 ~e~~i~~~ad~l~~~gl~ 41 (85)
|.+.+++.++++.++|++
T Consensus 50 t~~d~~~Lv~~~h~~gi~ 67 (316)
T PF00128_consen 50 TMEDFKELVDAAHKRGIK 67 (316)
T ss_dssp HHHHHHHHHHHHHHTTCE
T ss_pred hhhhhhhhhhccccccce
Confidence 678899999999887775
No 130
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=24.48 E-value=99 Score=24.24 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEeccccc
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDCWL 55 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~ 55 (85)
.+++.-++.|+.|+.. ...+||+-|.||+.=.
T Consensus 100 lpa~eAM~~A~~li~a-yV~AGF~kIHLD~Sm~ 131 (426)
T PRK15458 100 LPAAQAMANADDLIKS-YVAAGFKKIHLDCSMS 131 (426)
T ss_pred CCHHHHHHHHHHHHHH-HHHcCCceEEecCCCC
Confidence 6777788888888763 5668999999998543
No 131
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=24.38 E-value=1.5e+02 Score=19.25 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHcCccccCceEEEeccccc
Q psy10252 24 SERLFRTMADLVVSEGYAAVGYEYINIDDCWL 55 (85)
Q Consensus 24 ~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~ 55 (85)
.++.|.+..+.|.+.. ..++.+++||+=.
T Consensus 8 e~~~l~~~l~sl~~~~---~~~eIivvdd~S~ 36 (191)
T cd06436 8 EEAVIQRTLASLLRNK---PNFLVLVIDDASD 36 (191)
T ss_pred cHHHHHHHHHHHHhCC---CCeEEEEEECCCC
Confidence 4566777777776533 2379999999854
No 132
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=24.32 E-value=3e+02 Score=21.03 Aligned_cols=31 Identities=13% Similarity=0.288 Sum_probs=23.3
Q ss_pred CCcCCHHHHHHHHHHHHHcCccccCceEEEecccccc
Q psy10252 20 ENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLD 56 (85)
Q Consensus 20 ~~~i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~ 56 (85)
..+++.+.+++.++...+.++ +++.|+-+..
T Consensus 214 G~~~s~e~l~~l~~~~~~~~i------~lI~DEiYa~ 244 (447)
T PLN02607 214 GATVQRSVLEDILDFVVRKNI------HLVSDEIYSG 244 (447)
T ss_pred CcccCHHHHHHHHHHHHHCCC------EEEEeccccc
Confidence 358899999998887765433 6889998864
No 133
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=24.16 E-value=1.4e+02 Score=19.52 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHHcCccccCceEEEeccc
Q psy10252 24 SERLFRTMADLVVSEGYAAVGYEYINIDDC 53 (85)
Q Consensus 24 ~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdg 53 (85)
.++.+.+..+.|.+......-++.+++|++
T Consensus 11 ~~~~l~~~l~sl~~q~~~~~~~evivvd~~ 40 (249)
T cd02525 11 EEKYIEELLESLLNQSYPKDLIEIIVVDGG 40 (249)
T ss_pred chhhHHHHHHHHHhccCCCCccEEEEEeCC
Confidence 445667777777654443245789999987
No 134
>KOG1406|consensus
Probab=24.11 E-value=2e+02 Score=21.76 Aligned_cols=24 Identities=21% Similarity=0.497 Sum_probs=19.7
Q ss_pred HHHHcCccccCceEEEeccccccC
Q psy10252 34 LVVSEGYAAVGYEYINIDDCWLDK 57 (85)
Q Consensus 34 ~l~~~gl~~~Gy~~~~iDdgW~~~ 57 (85)
..+++||.+--.+.|.|-||....
T Consensus 281 l~aksgltpndvqvielhdcfs~n 304 (408)
T KOG1406|consen 281 LFAKSGLTPNDVQVIELHDCFSAN 304 (408)
T ss_pred HHHHcCCCcccceEEEeecccchh
Confidence 346679998889999999999764
No 135
>KOG3445|consensus
Probab=24.04 E-value=1.5e+02 Score=19.79 Aligned_cols=44 Identities=14% Similarity=0.134 Sum_probs=34.2
Q ss_pred cCCHHHHHHHHHHHHHcCccccCceEEEeccccccCCCCCCCceeecC
Q psy10252 22 CISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQADA 69 (85)
Q Consensus 22 ~i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~~d~ 69 (85)
+.|++.|...|+.|.+ ..|-+.+-|-.-|.+....-.|.|.|-+
T Consensus 88 nms~eevs~~~~lL~d----s~Gl~v~~lr~~~~t~nPSvqG~WTP~~ 131 (145)
T KOG3445|consen 88 NMSQEEVSKKATLLRD----SSGLKVVKLRKRVETLNPSVQGQWTPFV 131 (145)
T ss_pred cCCHHHHHHHHHHHhc----cCCCcceEecccccccCCcccccccccc
Confidence 5899999999999975 3567789999999875433358888764
No 136
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=24.02 E-value=2.9e+02 Score=21.48 Aligned_cols=30 Identities=7% Similarity=0.267 Sum_probs=22.9
Q ss_pred CcCCHHHHHHHHHHHHHcCccccCceEEEecccccc
Q psy10252 21 NCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLD 56 (85)
Q Consensus 21 ~~i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~ 56 (85)
.+++.+.+++.++...+.++ ++++|+-+..
T Consensus 214 ~~~s~e~l~~L~~~a~~~~i------~lI~DEiY~~ 243 (496)
T PLN02376 214 TMLDKDTLTNLVRFVTRKNI------HLVVDEIYAA 243 (496)
T ss_pred ccCCHHHHHHHHHHHHHcCC------EEEEEcCccc
Confidence 57899999999887755332 6899998874
No 137
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=23.97 E-value=78 Score=22.59 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHHcCccccCceEEEeccccccC
Q psy10252 24 SERLFRTMADLVVSEGYAAVGYEYINIDDCWLDK 57 (85)
Q Consensus 24 ~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~ 57 (85)
.+..+....++|. .|.+.|.||+ |-+.
T Consensus 28 ~~Ss~~~y~~aL~------~GcRcvElD~-wdg~ 54 (226)
T cd08558 28 GESSVEAYIRALL------RGCRCVELDC-WDGP 54 (226)
T ss_pred CccCHHHHHHHHH------hCCcEEEEEe-ecCC
Confidence 3444555566553 5788999997 7653
No 138
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=23.97 E-value=53 Score=18.98 Aligned_cols=15 Identities=13% Similarity=0.344 Sum_probs=10.2
Q ss_pred cccCc-eEEEeccccc
Q psy10252 41 AAVGY-EYINIDDCWL 55 (85)
Q Consensus 41 ~~~Gy-~~~~iDdgW~ 55 (85)
..+|| +..+|++||+
T Consensus 93 ~~~g~~~v~~l~GG~~ 108 (113)
T PF00581_consen 93 KKLGFKNVYILDGGFE 108 (113)
T ss_dssp HHTTTSSEEEETTHHH
T ss_pred HHcCCCCEEEecChHH
Confidence 34566 6788888875
No 139
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=23.93 E-value=28 Score=25.66 Aligned_cols=53 Identities=13% Similarity=0.228 Sum_probs=32.6
Q ss_pred CcCCHHHHHHHHHHHHH--cCccccCceEEEecccc--c---------cCCCCCCCceeecCCCCC
Q psy10252 21 NCISERLFRTMADLVVS--EGYAAVGYEYINIDDCW--L---------DKTRSFNGRLQADAKRFP 73 (85)
Q Consensus 21 ~~i~e~~i~~~ad~l~~--~gl~~~Gy~~~~iDdgW--~---------~~~~d~~G~~~~d~~kFP 73 (85)
..+|.+.|.+..+.++. .-.+++||+-|.|-.+- - ....|++|-=.-|..||+
T Consensus 137 ~~mt~~eI~~ii~~f~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~ 202 (341)
T PF00724_consen 137 REMTEEEIEEIIEDFAQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFL 202 (341)
T ss_dssp EE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHH
T ss_pred eeCCHHHHHHHHHHHHHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHH
Confidence 45899999988886643 35677999999998864 1 113466765445566664
No 140
>PRK11113 D-alanyl-D-alanine carboxypeptidase/endopeptidase; Provisional
Probab=23.72 E-value=2.2e+02 Score=22.28 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEeccccccC
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDK 57 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~ 57 (85)
++.+.+.+.++.|++.|++..- .-|++|+..+..
T Consensus 111 L~~~~L~~la~~l~~~GI~~I~-G~lv~D~s~f~~ 144 (477)
T PRK11113 111 LTRQDLRNMVATLKKSGVKQID-GNLLIDTSVFAS 144 (477)
T ss_pred CCHHHHHHHHHHHHHcCCcEEe-eeEEEECccccC
Confidence 7888899999999887776431 147888887754
No 141
>PRK01207 methionine synthase; Provisional
Probab=23.55 E-value=73 Score=24.05 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHH--cCcccc------Cce-EEEecccc
Q psy10252 24 SERLFRTMADLVVS--EGYAAV------GYE-YINIDDCW 54 (85)
Q Consensus 24 ~e~~i~~~ad~l~~--~gl~~~------Gy~-~~~iDdgW 54 (85)
.++.+.+.|++|.+ ..|.++ |.. +|+||+=-
T Consensus 143 ~~el~~~iA~al~~Ev~~L~~a~~~~~~G~~~~IQiDEPa 182 (343)
T PRK01207 143 RYDLAMEFARIINEELKDIKSAWDRKSPGRKLEIQIDEPA 182 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccCCceEEEEeCCC
Confidence 46777777777744 356777 786 79999843
No 142
>PF04313 HSDR_N: Type I restriction enzyme R protein N terminus (HSDR_N); InterPro: IPR007409 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type I restriction endonucleases are components of prokaryotic DNA restriction-modification mechanisms that protects the organism against invading foreign DNA. Type I enzymes have three different subunits subunits - M (modification), S (specificity) and R (restriction) - that form multifunctional enzymes with restriction (3.1.21.3 from EC), methylase (2.1.1.72 from EC) and ATPase activities [, ]. The S subunit is required for both restriction and modification and is responsible for recognition of the DNA sequence specific for the system. The M subunit is necessary for modification, and the R subunit is required for restriction. These enzymes use S-Adenosyl-L-methionine (AdoMet) as the methyl group donor in the methylation reaction, and have a requirement for ATP. They recognise asymmetric DNA sequences split into two domains of specific sequence, one 3-4 bp long and another 4-5 bp long, separated by a nonspecific spacer 6-8 bp in length. Cleavage occurs a considerable distance from the recognition sites, rarely less than 400 bp away and up to 7000 bp away. Adenosyl residues are methylated, one on each strand of the recognition sequence. These enzymes are widespread in eubacteria and archaea. In enteric bacteria they have been subdivide into four families: types IA, IB, IC and ID. Type III restriction endonucleases (3.1.21.5 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. Type III enzymes are hetero-oligomeric, multifunctional proteins composed of two subunits, Res and Mod. The Mod subunit recognises the DNA sequence specific for the system and is a modification methyltransferase; as such it is functionally equivalent to the M and S subunits of type I restriction endonuclease. Res is required for restriction, although it has no enzymatic activity on its own. Type III enzymes recognise short 5-6 bp long asymmetric DNA sequences and cleave 25-27 bp downstream to leave short, single-stranded 5' protrusions. They require the presence of two inversely oriented unmethylated recognition sites for restriction to occur. These enzymes methylate only one strand of the DNA, at the N-6 position of adenosyl residues, so newly replicated DNA will have only one strand methylated, which is sufficient to protect against restriction. Type III enzymes belong to the beta-subfamily of N6 adenine methyltransferases, containing the nine motifs that characterise this family, including motif I, the AdoMet binding pocket (FXGXG), and motif IV, the catalytic region (S/D/N (PP) Y/F) [, ]. This entry represents the N-terminal domain found in both the R subunit (HsdR) of type I enzymes and the Res subunit of type III enzymes. The type I enzyme represented is EcoRI, which recognises the DNA sequence 5'-GAATTC; the R protein (HsdR) is required for both nuclease and ATPase activity [, , ]. This domain is often found adjacent to a methylase domain (IPR002052 from INTERPRO) in restriction endonucleases or methylases. In one of the proteins, Q97RD0 from SWISSPROT, it is adjacent to a helicase domain (IPR011545 from INTERPRO) in a putative restriction endonuclease.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0006304 DNA modification; PDB: 2Y3T_B 2W74_B 2W00_B.
Probab=23.27 E-value=94 Score=20.72 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=14.0
Q ss_pred CCHHHHHH-HHHHHHHcCccccCceEEEeccc
Q psy10252 23 ISERLFRT-MADLVVSEGYAAVGYEYINIDDC 53 (85)
Q Consensus 23 i~e~~i~~-~ad~l~~~gl~~~Gy~~~~iDdg 53 (85)
+||+.+.+ .+..+ |..+||+|+.-++.
T Consensus 2 ~sE~~~e~~~i~~~----l~~lGy~~~~~~~~ 29 (194)
T PF04313_consen 2 FSEKELEQNLIIEL----LEELGYEYLPPKDI 29 (194)
T ss_dssp SSHHHHHHHHHHHH----H-CTT-EE------
T ss_pred CCHHHHHHHHHHHH----HHHcCCEEeecccc
Confidence 68887777 56554 46789998866553
No 143
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=23.22 E-value=54 Score=20.45 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEecccccc
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDCWLD 56 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~ 56 (85)
++.+.+.+..+.+.+ .|++|+||.+-..
T Consensus 102 ~~~~~~~~li~~l~~------~yd~IivD~~~~~ 129 (157)
T PF13614_consen 102 LTPEDVEELIDALKE------HYDYIIVDLPSSL 129 (157)
T ss_dssp HTSHHHHHHHHHHHH------HSSEEEEEEESTT
T ss_pred cCHHHHHHHHHHHHH------cCCEEEEECcCCc
Confidence 455666666666543 5899999987643
No 144
>COG1400 SEC65 Signal recognition particle 19 kDa protein [Intracellular trafficking and secretion]
Probab=23.02 E-value=1.5e+02 Score=18.30 Aligned_cols=43 Identities=9% Similarity=0.095 Sum_probs=22.9
Q ss_pred ccCceEEEeccc-cccCCCCCCCceeecCCCCC-CCHHHHHHHHh
Q psy10252 42 AVGYEYINIDDC-WLDKTRSFNGRLQADAKRFP-RGIADLSNYVS 84 (85)
Q Consensus 42 ~~Gy~~~~iDdg-W~~~~~d~~G~~~~d~~kFP-~Gl~~l~~~ih 84 (85)
++||++.+.-|. +=....+..|+.+++...+= ..|+.++.+|.
T Consensus 43 ~LGl~~~v~~dk~yPr~~w~~~g~vive~~~~K~~~lk~ia~~lr 87 (93)
T COG1400 43 ELGLKPKVERDKKYPRLWWEISGRVIVESNGKKSKLLKAIAAKLR 87 (93)
T ss_pred HcCCCeeechhhcCCCchhhhCceEEEecCccHhHHHHHHHHHHH
Confidence 467778654443 22112233488887765421 14666666664
No 145
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=23.01 E-value=1.1e+02 Score=23.92 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEecccc
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDCW 54 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW 54 (85)
++++.-++.|+.|+.. ...+||+-|.||+.=
T Consensus 96 lpa~eAM~~A~~li~a-yV~AGF~kIHLD~Sm 126 (420)
T TIGR02810 96 LPADEAMAKAAALVDA-YVEAGFTKIHLDASM 126 (420)
T ss_pred CCHHHHHHHHHHHHHH-HHHcCCceEEecCCC
Confidence 6777888888888763 566899999999854
No 146
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=22.98 E-value=96 Score=20.12 Aligned_cols=28 Identities=11% Similarity=-0.016 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHcCccccCceEEEeccccc
Q psy10252 26 RLFRTMADLVVSEGYAAVGYEYINIDDCWL 55 (85)
Q Consensus 26 ~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~ 55 (85)
..+.+..+.+.+.-.. .++.|++||+=.
T Consensus 14 ~~l~~~L~sl~~q~~~--~~eiivVdd~s~ 41 (196)
T cd02520 14 PNLYENLESFFQQDYP--KYEILFCVQDED 41 (196)
T ss_pred ccHHHHHHHHHhccCC--CeEEEEEeCCCc
Confidence 3466667766553333 289999998744
No 147
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=22.61 E-value=1.3e+02 Score=26.05 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHcCccccCceEEEeccccccCCCCCCCceeecCCCCCCCHHHHHHH
Q psy10252 27 LFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRFPRGIADLSNY 82 (85)
Q Consensus 27 ~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~~~ 82 (85)
.+.....+|.+.-|-..+.+||+-|+-=.-.+ ..+|++.++. +|++||...++.
T Consensus 296 ~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVD-e~TGR~m~gr-rws~GLHQaIEa 349 (939)
T PRK12902 296 WAHYIFNALKAKELFIKDVNYIVRNGEVVIVD-EFTGRVMPGR-RWSDGLHQAIEA 349 (939)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEECCEEEEEE-CCCCCCCCCC-ccchHHHHHHHh
Confidence 34444556666566667788998876543222 1369999975 999999877654
No 148
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=22.49 E-value=1.5e+02 Score=16.23 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEe
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINI 50 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~i 50 (85)
++-..|-.....|.+.|+.......+.|
T Consensus 40 ~sr~tv~r~l~~l~~~g~I~~~~~~i~I 67 (76)
T PF13545_consen 40 VSRETVSRILKRLKDEGIIEVKRGKIII 67 (76)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence 6777888888999888887765555554
No 149
>PF07244 Surf_Ag_VNR: Surface antigen variable number repeat; InterPro: IPR010827 This motif is found primarily in bacterial surface antigens, normally as variable number repeats at the N terminus. The C terminus of these proteins is normally represented by IPR000184 from INTERPRO. There may also be a relationship to haemolysin activator HlyB (IPR005565 from INTERPRO). The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.; GO: 0019867 outer membrane; PDB: 2X8X_X 3MC8_A 3OG5_A 3MC9_B 2QCZ_B 3EFC_A 3Q6B_A 2QDF_A 2V9H_A.
Probab=22.44 E-value=1.5e+02 Score=16.16 Aligned_cols=31 Identities=13% Similarity=0.265 Sum_probs=20.6
Q ss_pred CCCcCCHHHHHHHHHHHHHcCccccCceEEEe
Q psy10252 19 PENCISERLFRTMADLVVSEGYAAVGYEYINI 50 (85)
Q Consensus 19 ~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~~~i 50 (85)
|...++++.+.+..+.|.+ -+.+.||-+..|
T Consensus 28 ~G~~~~~~~i~~~~~~l~~-~y~~~Gy~~~~V 58 (78)
T PF07244_consen 28 PGDPFNPEKIEEDIERLQD-YYKDKGYFFAKV 58 (78)
T ss_dssp TTSBECHHHHHHHHHHHHH-HHHTTSCSEEEE
T ss_pred CCCEeCHHHHHHHHHHHHH-HHHHcCCcceEE
Confidence 4455799999998888864 245666644443
No 150
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=22.42 E-value=1.4e+02 Score=19.22 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHHcCcc--ccCceEEEec
Q psy10252 23 ISERLFRTMADLVVSEGYA--AVGYEYINID 51 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~--~~Gy~~~~iD 51 (85)
+|+..++++.. ..|++ +.|.+.|+|-
T Consensus 5 ~nprk~rkmmk---kmGik~e~i~v~~V~Ir 32 (115)
T PRK06369 5 MNPRKMKQMMK---QMGIDVEELDVEEVIIR 32 (115)
T ss_pred CCHHHHHHHHH---HcCCcchhcCeEEEEEE
Confidence 78888887755 45888 8887777763
No 151
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=22.38 E-value=1.3e+02 Score=25.62 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=34.8
Q ss_pred HHHHHHHHHHcCccccCceEEEeccccccCCCCCCCceeecCCCCCCCHHHHHHH
Q psy10252 28 FRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRFPRGIADLSNY 82 (85)
Q Consensus 28 i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~~~ 82 (85)
+.....+|.+.-|-..+.+|++-|+-=.-.+ ..+|++.++. +|++||...+..
T Consensus 288 ~~~i~~AL~A~~l~~~d~dYiV~dg~V~ivD-e~TGR~~~gr-~ws~GLHQaiEa 340 (830)
T PRK12904 288 VHHLNQALRAHELFKRDVDYIVKDGEVVIVD-EFTGRLMPGR-RYSDGLHQAIEA 340 (830)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEECCEEEEEE-CCCCccCCCC-ccchHHHHHHHH
Confidence 4444556666556556778988765333211 2469999886 999999877654
No 152
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=22.10 E-value=1.8e+02 Score=19.51 Aligned_cols=30 Identities=3% Similarity=0.032 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHHcCccccCceEEEeccc
Q psy10252 24 SERLFRTMADLVVSEGYAAVGYEYINIDDC 53 (85)
Q Consensus 24 ~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdg 53 (85)
.++.|.+..+.+.+.-...--++.+++||+
T Consensus 12 e~~~l~~~l~sl~~~~y~~~~~eiivVdd~ 41 (241)
T cd06427 12 EAEVLPQLIASLSALDYPRSKLDVKLLLEE 41 (241)
T ss_pred cHHHHHHHHHHHHhCcCCcccEEEEEEECC
Confidence 346677777777553332223688888886
No 153
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=21.83 E-value=1.4e+02 Score=19.42 Aligned_cols=31 Identities=23% Similarity=0.183 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHcCc--cccCceEEEeccccc
Q psy10252 25 ERLFRTMADLVVSEGY--AAVGYEYINIDDCWL 55 (85)
Q Consensus 25 e~~i~~~ad~l~~~gl--~~~Gy~~~~iDdgW~ 55 (85)
++.|.+..+.+.+.-. ....++.+++|||=.
T Consensus 9 ~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~ 41 (211)
T cd04188 9 EKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSK 41 (211)
T ss_pred HHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCC
Confidence 3445556665544211 113589999999854
No 154
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=21.81 E-value=1.4e+02 Score=25.05 Aligned_cols=55 Identities=15% Similarity=0.162 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHcCccccCceEEEeccccccCCCCCCCceeecCCCCCCCHHHHHHH
Q psy10252 26 RLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRFPRGIADLSNY 82 (85)
Q Consensus 26 ~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~~~ 82 (85)
+.+.....+|.+.-+-..+.+|++-|+-=.-.+ ..+|++.++. +|++||...++.
T Consensus 280 ~~~~~i~~al~A~~~~~~d~dYiV~~~~v~ivD-~~TGr~~~gr-~~~~GLhQaiea 334 (762)
T TIGR03714 280 ELVRHINLALRAHYLFKRNKDYVVTNGEVVLLD-RITGRLLEGT-KLQSGIHQAIEA 334 (762)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCEEEEEE-CCCCcCCCCC-CcchHHHHHHHh
Confidence 344444555655555556788998776433222 2369998886 899999887654
No 155
>PHA02357 hypothetical protein
Probab=21.58 E-value=1.1e+02 Score=18.37 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=15.8
Q ss_pred HHHHHHHHHHcCccccC-ceEEEecc
Q psy10252 28 FRTMADLVVSEGYAAVG-YEYINIDD 52 (85)
Q Consensus 28 i~~~ad~l~~~gl~~~G-y~~~~iDd 52 (85)
+.+.+..+++.+....| |-|++-|.
T Consensus 7 ~iAi~SGlvslaVVg~G~yvyvnkDt 32 (81)
T PHA02357 7 GIAILSGLVSLAVVGGGAYVYVNKDT 32 (81)
T ss_pred HHHHHhhhhhhheeccceEEEEechH
Confidence 45555666666555555 78888764
No 156
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=21.58 E-value=1.4e+02 Score=20.90 Aligned_cols=29 Identities=17% Similarity=0.087 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHcCccccCceEEEecccc
Q psy10252 26 RLFRTMADLVVSEGYAAVGYEYINIDDCW 54 (85)
Q Consensus 26 ~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW 54 (85)
+.+++..+.+.+.-....-++.|+||||=
T Consensus 12 ~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S 40 (299)
T cd02510 12 STLLRTVHSVINRTPPELLKEIILVDDFS 40 (299)
T ss_pred HHHHHHHHHHHhcCchhcCCEEEEEECCC
Confidence 56666677665432222236999999984
No 157
>PRK14558 pyrH uridylate kinase; Provisional
Probab=21.50 E-value=1.4e+02 Score=20.50 Aligned_cols=30 Identities=7% Similarity=0.050 Sum_probs=24.4
Q ss_pred cCCHHHHHHHHHHHHHcCccccCceEEEeccc
Q psy10252 22 CISERLFRTMADLVVSEGYAAVGYEYINIDDC 53 (85)
Q Consensus 22 ~i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdg 53 (85)
.++.+.|...|+.+++ +.+.|++.+++=.+
T Consensus 19 ~~~~~~i~~la~~i~~--~~~~g~~viiV~Gg 48 (231)
T PRK14558 19 GFDPERVNYLVNEIKS--VVEYGFKIGIVIGA 48 (231)
T ss_pred CcCHHHHHHHHHHHHH--HHHCCCeEEEEECc
Confidence 4899999999999876 66678899888643
No 158
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=21.47 E-value=1e+02 Score=25.55 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=12.9
Q ss_pred CccccCceEEEeccc
Q psy10252 39 GYAAVGYEYINIDDC 53 (85)
Q Consensus 39 gl~~~Gy~~~~iDdg 53 (85)
-|.++|.++|+||+-
T Consensus 583 ~L~~aG~~~IQIDEP 597 (750)
T TIGR01371 583 DLEEAGIKIIQIDEP 597 (750)
T ss_pred HHHHcCCCEEEEeCc
Confidence 477899999999994
No 159
>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=21.44 E-value=2e+02 Score=21.29 Aligned_cols=29 Identities=21% Similarity=0.167 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHHcCccccCceEEEecc
Q psy10252 24 SERLFRTMADLVVSEGYAAVGYEYINIDD 52 (85)
Q Consensus 24 ~e~~i~~~ad~l~~~gl~~~Gy~~~~iDd 52 (85)
+.+.+....+.+.+.|+-..||-||.-|-
T Consensus 202 s~~~a~~if~~A~~~gm~g~~yvWI~t~~ 230 (362)
T cd06378 202 SKEEAEYIFRAARSAGLTGPGYVWIVPSL 230 (362)
T ss_pred CHHHHHHHHHHHHHcCCcCCCeEEEeccc
Confidence 44445555555556677766777777664
No 160
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=21.24 E-value=93 Score=24.29 Aligned_cols=25 Identities=8% Similarity=0.174 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHHcCccccCceEEE
Q psy10252 24 SERLFRTMADLVVSEGYAAVGYEYIN 49 (85)
Q Consensus 24 ~e~~i~~~ad~l~~~gl~~~Gy~~~~ 49 (85)
-++.|.++|++|++ -|...||+++.
T Consensus 285 Ya~qVv~NAkaLAe-~l~~~G~~vvs 309 (413)
T COG0112 285 YAKQVVKNAKALAE-ALKERGFKVVS 309 (413)
T ss_pred HHHHHHHHHHHHHH-HHHHcCCeEec
Confidence 35678888888877 47778888765
No 161
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=21.14 E-value=1.5e+02 Score=25.04 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=35.1
Q ss_pred HHHHHHHHcCccccCceEEEeccccccCCCCCCCceeecCCCCCCCHHHHHHH
Q psy10252 30 TMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRFPRGIADLSNY 82 (85)
Q Consensus 30 ~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~~~ 82 (85)
..-.+|.+.-|-..+.+||+-|+--.-.+ ..+|++.+.. +|++||...++.
T Consensus 287 ~i~~AL~A~~l~~~d~dYiV~dgeV~iVD-e~TGRvm~gr-rwsdGLHQaIEa 337 (764)
T PRK12326 287 QVNVALHAHALLQRDVHYIVRDGKVHLIN-ASRGRIAQLQ-RWPDGLQAAVEA 337 (764)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCEEEEEE-CCCCCcCCCC-ccChHHHHHHHH
Confidence 33345555555566789998887665432 2369999985 999999877654
No 162
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.12 E-value=1e+02 Score=22.58 Aligned_cols=53 Identities=13% Similarity=0.160 Sum_probs=34.7
Q ss_pred CcCCHHHHHHHHHHHHH--cCccccCceEEEecccc--------cc---CCCCCCCceeecCCCCC
Q psy10252 21 NCISERLFRTMADLVVS--EGYAAVGYEYINIDDCW--------LD---KTRSFNGRLQADAKRFP 73 (85)
Q Consensus 21 ~~i~e~~i~~~ad~l~~--~gl~~~Gy~~~~iDdgW--------~~---~~~d~~G~~~~d~~kFP 73 (85)
..+|++.|.+..+.+++ .-.+++||+-|.|=.+- .. ...|++|-=.-|..||+
T Consensus 137 ~~mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~ 202 (338)
T cd04733 137 RAMTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLL 202 (338)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHH
Confidence 35889999888886643 34677999999997763 21 12356643344666775
No 163
>KOG3220|consensus
Probab=21.02 E-value=94 Score=22.31 Aligned_cols=10 Identities=40% Similarity=0.574 Sum_probs=8.7
Q ss_pred cCceEEEecc
Q psy10252 43 VGYEYINIDD 52 (85)
Q Consensus 43 ~Gy~~~~iDd 52 (85)
.||+||+||-
T Consensus 105 ~G~r~ivlDi 114 (225)
T KOG3220|consen 105 RGYRVIVLDI 114 (225)
T ss_pred cCCeEEEEec
Confidence 5899999995
No 164
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=21.02 E-value=1.3e+02 Score=23.61 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEecccc
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDCW 54 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW 54 (85)
.+++.-++.|+.|+.. ...+||+-|.||+.=
T Consensus 97 ~pa~eAM~~A~~li~a-yV~AGF~kIHLD~Sm 127 (421)
T PRK15052 97 EPADAAMEKSVELVKA-YVRAGFSKIHLDASM 127 (421)
T ss_pred CCHHHHHHHHHHHHHH-HHHcCCceEEecCCC
Confidence 4677777788877663 566899999999854
No 165
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=20.81 E-value=83 Score=23.94 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHH--cCccccCceEEEecc
Q psy10252 24 SERLFRTMADLVVS--EGYAAVGYEYINIDD 52 (85)
Q Consensus 24 ~e~~i~~~ad~l~~--~gl~~~Gy~~~~iDd 52 (85)
.+..+.+.|..+.. ..++++|..+|+||.
T Consensus 137 ~~~la~~ia~~l~~e~~~l~~~gv~~IqIDE 167 (344)
T PRK06052 137 LLILAKSVERFVENAIKSAKNFKIKTISIDE 167 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 36666666665533 367889999999998
No 166
>PRK12353 putative amino acid kinase; Reviewed
Probab=20.48 E-value=1.5e+02 Score=21.82 Aligned_cols=29 Identities=14% Similarity=0.085 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEeccc
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDC 53 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdg 53 (85)
++.+.|...|+.++. |.+.||+.+++=.|
T Consensus 23 ~~~~~i~~la~~Ia~--l~~~G~~vvlV~Gg 51 (314)
T PRK12353 23 AQLEAVKKTAKSLVD--LIEEGHEVVITHGN 51 (314)
T ss_pred ccHHHHHHHHHHHHH--HHHCCCEEEEEeCC
Confidence 788889999999876 78889999998665
No 167
>smart00642 Aamy Alpha-amylase domain.
Probab=20.35 E-value=1.5e+02 Score=19.61 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHHHcCccccCceEEEecc
Q psy10252 24 SERLFRTMADLVVSEGYAAVGYEYINIDD 52 (85)
Q Consensus 24 ~e~~i~~~ad~l~~~gl~~~Gy~~~~iDd 52 (85)
|.+.+++.++++.+.|++ |++|=
T Consensus 68 t~~d~~~lv~~~h~~Gi~------vilD~ 90 (166)
T smart00642 68 TMEDFKELVDAAHARGIK------VILDV 90 (166)
T ss_pred CHHHHHHHHHHHHHCCCE------EEEEE
Confidence 678899999998887765 66664
No 168
>PLN02411 12-oxophytodienoate reductase
Probab=20.19 E-value=1.4e+02 Score=22.64 Aligned_cols=53 Identities=13% Similarity=0.161 Sum_probs=36.4
Q ss_pred CcCCHHHHHHHHHHHHH--cCccccCceEEEecccc--c---------cCCCCCCCceeecCCCCC
Q psy10252 21 NCISERLFRTMADLVVS--EGYAAVGYEYINIDDCW--L---------DKTRSFNGRLQADAKRFP 73 (85)
Q Consensus 21 ~~i~e~~i~~~ad~l~~--~gl~~~Gy~~~~iDdgW--~---------~~~~d~~G~~~~d~~kFP 73 (85)
..+|++.|.+..+.+++ .-.+++||+-|.|=.+- - ....|++|-=.-|..||+
T Consensus 153 r~mt~~eI~~ii~~f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~ 218 (391)
T PLN02411 153 RALETSEIPEVVEHYRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFL 218 (391)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHH
Confidence 45899999998887644 34567999999998753 1 122366765556677875
No 169
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=20.19 E-value=86 Score=22.85 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHcCccccCceEEEecccccc
Q psy10252 26 RLFRTMADLVVSEGYAAVGYEYINIDDCWLD 56 (85)
Q Consensus 26 ~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~ 56 (85)
..+....++|. .|.+.|.||. |-+
T Consensus 30 ss~~~y~~aL~------~GcR~vElD~-w~g 53 (260)
T cd08597 30 SSVEGYVRALQ------RGCRCVELDC-WDG 53 (260)
T ss_pred cCHHHHHHHHH------hCCCEEEEEe-EcC
Confidence 44455555542 5888999997 764
No 170
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=20.18 E-value=1.7e+02 Score=19.32 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHHHHcCccccCceEEEecc
Q psy10252 23 ISERLFRTMADLVVSEGYAAVGYEYINIDD 52 (85)
Q Consensus 23 i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDd 52 (85)
++ ..++..|+.|++ .||..+..|=
T Consensus 26 ~~-~~~~~~ad~lA~-----~Gy~v~~pD~ 49 (218)
T PF01738_consen 26 LN-PNIRDLADRLAE-----EGYVVLAPDL 49 (218)
T ss_dssp S--HHHHHHHHHHHH-----TT-EEEEE-C
T ss_pred Cc-hHHHHHHHHHHh-----cCCCEEeccc
Confidence 45 678899998865 5788888885
No 171
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=20.14 E-value=2e+02 Score=22.15 Aligned_cols=37 Identities=8% Similarity=0.119 Sum_probs=30.7
Q ss_pred CCcCCHHHHHHHHHHHHHcCccccCceEEEeccccccCC
Q psy10252 20 ENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKT 58 (85)
Q Consensus 20 ~~~i~e~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~ 58 (85)
+..++...+.+.++.+++ |+..|++.|++-.|=-...
T Consensus 22 ~g~l~~~~l~~l~~~ia~--L~~~G~eVilVSSGAiaaG 58 (369)
T COG0263 22 TGGLDRSKLEELVRQVAA--LHKAGHEVVLVSSGAIAAG 58 (369)
T ss_pred CCCcCHHHHHHHHHHHHH--HHhCCCEEEEEccchhhhC
Confidence 445899999999999987 7899999999988876543
No 172
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.12 E-value=1.2e+02 Score=23.71 Aligned_cols=19 Identities=11% Similarity=0.085 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHHHcCccc
Q psy10252 24 SERLFRTMADLVVSEGYAA 42 (85)
Q Consensus 24 ~e~~i~~~ad~l~~~gl~~ 42 (85)
.-+.|+++++.|++.|.++
T Consensus 174 ~~e~Il~ev~~Lv~~G~kE 192 (437)
T COG0621 174 PPEDILKEVKRLVAQGVKE 192 (437)
T ss_pred CHHHHHHHHHHHHHCCCeE
Confidence 5677999999999887775
No 173
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=20.01 E-value=1.4e+02 Score=25.71 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHcCccccCceEEEeccccccCCCCCCCceeecCCCCCCCHHHHHHH
Q psy10252 26 RLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRFPRGIADLSNY 82 (85)
Q Consensus 26 ~~i~~~ad~l~~~gl~~~Gy~~~~iDdgW~~~~~d~~G~~~~d~~kFP~Gl~~l~~~ 82 (85)
+.+.....+|.+.-+-..+.+||+-|+.=.-.+ ..+|++.++. +|.+||...+..
T Consensus 282 ~l~h~i~~AL~A~~lf~rd~dYiV~dg~V~IVD-efTGR~m~gR-rwsdGLHQaIEA 336 (925)
T PRK12903 282 ELVHRIQNALRAHKVMKEDVEYIVRDGKIELVD-QFTGRIMEGR-SYSEGLQQAIQA 336 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCEEEEEE-CCCCCCCCCC-ccchHHHHHHHH
Confidence 344455556655555567788998776433221 1369999875 999999877653
Done!