RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10252
(85 letters)
>gnl|CDD|166449 PLN02808, PLN02808, alpha-galactosidase.
Length = 386
Score = 81.2 bits (200), Expect = 8e-20
Identities = 37/83 (44%), Positives = 48/83 (57%), Gaps = 10/83 (12%)
Query: 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
MGW +W F+CN I+E L + AD +VS G AA+GY+YIN+DDCW + R
Sbjct: 34 MGWNSWNHFQCN----------INETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRD 83
Query: 61 FNGRLQADAKRFPRGIADLSNYV 83
G L A FP GI L++YV
Sbjct: 84 SQGNLVPKASTFPSGIKALADYV 106
>gnl|CDD|177874 PLN02229, PLN02229, alpha-galactosidase.
Length = 427
Score = 77.3 bits (190), Expect = 2e-18
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 10/83 (12%)
Query: 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
MGW +W F CN I+E + + AD +VS G A +GY ++NIDDCW + R
Sbjct: 65 MGWNSWNFFACN----------INETVIKETADALVSTGLADLGYIHVNIDDCWSNLKRD 114
Query: 61 FNGRLQADAKRFPRGIADLSNYV 83
G+L D K FP GI L++YV
Sbjct: 115 SKGQLVPDPKTFPSGIKLLADYV 137
>gnl|CDD|178295 PLN02692, PLN02692, alpha-galactosidase.
Length = 412
Score = 72.4 bits (177), Expect = 1e-16
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
MGW +W F C D E++ + AD +VS G + +GY Y+NIDDCW + R
Sbjct: 58 MGWNSWNHFSCKID----------EKMIKETADALVSTGLSKLGYTYVNIDDCWAEIARD 107
Query: 61 FNGRLQADAKRFPRGIADLSNYVST 85
G L FP GI L++YV +
Sbjct: 108 EKGNLVPKKSTFPSGIKALADYVHS 132
>gnl|CDD|216861 pfam02065, Melibiase, Melibiase.
Length = 395
Score = 42.4 bits (100), Expect = 4e-06
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 18/86 (20%)
Query: 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWL---DK 57
+ WE + +E +AD A +G E +DD W +
Sbjct: 43 VLLNNWEATYFD----------FNEDKLLDLADEA-----ADLGIELFVLDDGWFGGRND 87
Query: 58 TRSFNGRLQADAKRFPRGIADLSNYV 83
S G + ++FP G+ L+++V
Sbjct: 88 DNSSLGDWFVNEQKFPNGLKHLADHV 113
>gnl|CDD|178770 PLN03231, PLN03231, putative alpha-galactosidase; Provisional.
Length = 357
Score = 28.4 bits (63), Expect = 0.37
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 17/67 (25%)
Query: 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDK-------TRSFN---------GRLQ 66
ISE F A +V SE GYEY+ ID W K T + + GR
Sbjct: 15 ISEEQFLENAKIV-SETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPL 73
Query: 67 ADAKRFP 73
D KR+P
Sbjct: 74 PDPKRWP 80
>gnl|CDD|178487 PLN02899, PLN02899, alpha-galactosidase.
Length = 633
Score = 26.3 bits (58), Expect = 1.8
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 19/79 (24%)
Query: 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDK------TRSFN-------GRLQADA 69
+SE F A+ +VS+ GYEY+ +D W K S GR D
Sbjct: 45 VSEEEFLQNAE-IVSQRLLPFGYEYVVVDYLWYRKKVEGAYVDSLGFDVIDEWGRPIPDP 103
Query: 70 KRFP-----RGIADLSNYV 83
R+P +G +++ V
Sbjct: 104 GRWPSSRGGKGFTEVAEKV 122
>gnl|CDD|236312 PRK08617, PRK08617, acetolactate synthase; Reviewed.
Length = 552
Score = 26.0 bits (58), Expect = 2.3
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 11/32 (34%)
Query: 32 ADLVVSEGYAAVGYE-----------YINIDD 52
ADLV++ GY + YE I+ID
Sbjct: 269 ADLVITIGYDPIEYEPRNWNSEGDATIIHIDV 300
>gnl|CDD|151953 pfam11516, DUF3220, Protein of unknown function (DUF3120). This
family of proteins with unknown function appears to be
restricted to Bordetella.
Length = 106
Score = 25.2 bits (54), Expect = 3.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 47 YINIDDCWLDKTRSFNGRLQADAKRFPRGIADL 79
+ N+D WLD R+ + LQ D K + + + DL
Sbjct: 11 HANLDVKWLDGLRAGSMALQGDVKVWMQNLEDL 43
>gnl|CDD|173949 cd08190, HOT, Hydroxyacid-oxoacid transhydrogenase (HOT) involved
in gamma-hydroxybutyrate metabolism.
Hydroxyacid-oxoacid transhydrogenase (HOT), also known
as D-2-hydroxyglutarate transhydrogenase. It catalyzes
the conversion of gamma-hydroxybutyrate (GHB) to
succinic semialdehyde (SSA), coupled to the
stoichiometric conversion of alpha-ketoglutarate to
D-2-hydroxyglutarate in gamma-Hydroxybutyrate
catabolism. Unlike many other alcohols, which are
oxidized by NAD-linked dehydrogenases,
gamma-hydroxybutyrate is metabolized to succinate
semialdehyde by hydroxyacid-oxoacid transhydrogenase
which does not require free NAD or NADP, but instead
using alpha -ketoglutarate as an acceptor, converting it
to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as
an intermediate acceptor to regenerate NAD(P) required
for the oxidation of GHB. HOT also catalyzes the
reversible oxidation of a hydroxyacid obligatorily
coupled to the reduction of an oxoacid, and requires no
cofactor. In mammals, the HOT enzyme is located in
mitochondria, and is expressed with an N-terminal
mitochondrial targeting sequence. HOT enzyme is member
of the metal-containing alcohol dehydrogenase family.
They typically contain an iron although other metal ions
may be used.
Length = 414
Score = 25.3 bits (56), Expect = 4.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 13 TDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINID 51
D +++ L + M DL V +G AA+GY +I
Sbjct: 343 NAKIEDAGEVLADALRKLMRDLGVPDGLAALGYTESDIP 381
>gnl|CDD|227934 COG5647, COG5647, Cullin, a subunit of E3 ubiquitin ligase
[Posttranslational modification, protein turnover,
chaperones].
Length = 773
Score = 25.1 bits (55), Expect = 6.0
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 23 ISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRL 65
I ERL+ +MA L + E Y + Y Y +KTRS L
Sbjct: 34 IFERLYDSMAILSLMEVYTKI-YNYC------TNKTRSLESDL 69
>gnl|CDD|237356 PRK13347, PRK13347, coproporphyrinogen III oxidase; Provisional.
Length = 453
Score = 25.0 bits (55), Expect = 6.5
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 25 ERL--FRTMADLVVSEGYAAVG 44
ERL R +AD +++ GY +G
Sbjct: 264 ERLRQARAVADRLLAAGYVPIG 285
>gnl|CDD|223466 COG0389, DinP, Nucleotidyltransferase/DNA polymerase involved in
DNA repair [DNA replication, recombination, and repair].
Length = 354
Score = 25.0 bits (55), Expect = 6.5
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 50 IDDCWLDKTRSFNGRLQADAKRFPRGI 76
ID+ +LD T + ADA R I
Sbjct: 100 IDEAFLDLTDALRLLGLADAPRIALEI 126
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.137 0.454
Gapped
Lambda K H
0.267 0.0484 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,404,098
Number of extensions: 336800
Number of successful extensions: 217
Number of sequences better than 10.0: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 12
Length of query: 85
Length of database: 10,937,602
Length adjustment: 53
Effective length of query: 32
Effective length of database: 8,586,840
Effective search space: 274778880
Effective search space used: 274778880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.8 bits)