RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10252
(85 letters)
>1ktb_A Alpha-N-acetylgalactosaminidase; glycoprotein, (beta/alpha)8
barrel, hydrolase; HET: NAG; 1.90A {Gallus gallus}
SCOP: b.71.1.1 c.1.8.1 PDB: 1ktc_A* 3h55_A* 3h54_A*
3h53_A* 3igu_A*
Length = 405
Score = 104 bits (261), Expect = 1e-28
Identities = 50/83 (60%), Positives = 60/83 (72%)
Query: 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
MGWLAWERFRCN +C+ DP CISE LF MAD + +G+ +GY+YINIDDCW K R
Sbjct: 11 MGWLAWERFRCNVNCREDPRQCISEMLFMEMADRIAEDGWRELGYKYINIDDCWAAKQRD 70
Query: 61 FNGRLQADAKRFPRGIADLSNYV 83
GRL D +RFPRGI L++YV
Sbjct: 71 AEGRLVPDPERFPRGIKALADYV 93
>3a21_A Putative secreted alpha-galactosidase; beta-alpha-barrel, greek
KEY motif, beta-jellyroll, beta-TRE hydrolase; HET: GOL
1PG EPE; 1.51A {Streptomyces avermitilis} PDB: 3a22_A*
3a23_A*
Length = 614
Score = 105 bits (263), Expect = 2e-28
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
MGW +W F I + + D V+ G A GY YINID+ W TR
Sbjct: 14 MGWASWNSFAAK----------IDYSVIKKQVDAFVAAGLPAAGYTYINIDEGWWQGTRD 63
Query: 61 FNGRLQADAKRFPRGIADLSNYV 83
G + D +P G++ ++ Y+
Sbjct: 64 SAGNITVDTAEWPGGMSAITAYI 86
>3hg3_A Alpha-galactosidase A; glycoprotein, carbohydrate-binding
protein, glycosidase, Lys enzyme, (beta/alpha)8 barrel,
disease mutation; HET: NAG BMA MAN GLA GLC 2PE; 1.90A
{Homo sapiens} PDB: 3tv8_A* 3lx9_A* 3lxa_A* 3lxb_A*
3lxc_A* 3s5z_A* 1r47_A* 1r46_A* 3gxn_A* 3gxt_A* 3hg2_A*
3hg4_A* 3hg5_A* 3gxp_A* 3s5y_A*
Length = 404
Score = 101 bits (253), Expect = 1e-27
Identities = 51/83 (61%), Positives = 63/83 (75%)
Query: 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
MGWL WERF CN DC+ +P++CISE+LF MA+L+VSEG+ GYEY+ IDDCW+ R
Sbjct: 11 MGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMAPQRD 70
Query: 61 FNGRLQADAKRFPRGIADLSNYV 83
GRLQAD +RFP GI L+NYV
Sbjct: 71 SEGRLQADPQRFPHGIRQLANYV 93
>1szn_A Alpha-galactosidase; (beta/alpha)8 barrel,TWO domains,
glycoprotein, hydrolase; HET: NAG BMA MAN; 1.54A
{Hypocrea jecorina} SCOP: b.71.1.1 c.1.8.1 PDB: 1t0o_A*
Length = 417
Score = 86.8 bits (214), Expect = 5e-22
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
+GW +W + C+ I E F + A+L+VS G GY Y+NIDDCW K
Sbjct: 14 LGWNSWNAYHCD----------IDESKFLSAAELIVSSGLLDAGYNYVNIDDCWSMKDGR 63
Query: 61 FNGRLQADAKRFPRGIADLSNYV 83
+G + +A RFP GI L+ V
Sbjct: 64 VDGHIAPNATRFPDGIDGLAKKV 86
>3a5v_A Alpha-galactosidase; beta/alpha barrel, N-glycosylation,
hydrolase; HET: MAN NAG BMA 1PG; 2.00A {Umbelopsis
vinacea}
Length = 397
Score = 86.0 bits (212), Expect = 8e-22
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
MGW W ++ CN + E+L A + S G +GY Y+ IDDCW R
Sbjct: 11 MGWNTWNKYGCN----------VDEQLILDAAKAIASSGLKDLGYNYVIIDDCWQKNERE 60
Query: 61 FNGRLQADAKRFPRGIADLSNYV 83
+ L AD +FPRGI L + +
Sbjct: 61 SSKTLLADPTKFPRGIKPLVDDI 83
>3lrk_A Alpha-galactosidase 1; tetramer, GH27, glycoprotein, glycosida
hydrolase; HET: NAG BTB; 1.95A {Saccharomyces
cerevisiae} PDB: 3lrl_A* 3lrm_A*
Length = 479
Score = 83.4 bits (205), Expect = 1e-20
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
MGW W F C+ +SE+L AD + G +GY+YI +DDCW R
Sbjct: 32 MGWDNWNTFACD----------VSEQLLLDTADRISDLGLKDMGYKYIILDDCWSSG-RD 80
Query: 61 FNGRLQADAKRFPRGIADLSNYV 83
+G L AD ++FP G+ +++++
Sbjct: 81 SDGFLVADEQKFPNGMGHVADHL 103
>1uas_A Alpha-galactosidase; TIM-barrel, beta-alpha-barrel, greek KEY
motif, hydrolase; HET: GLA; 1.50A {Oryza sativa} SCOP:
b.71.1.1 c.1.8.1
Length = 362
Score = 82.5 bits (203), Expect = 1e-20
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 10/83 (12%)
Query: 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
MGW +W F C I+E++ R AD +V+ G A +GY+Y+NIDDCW + +R
Sbjct: 11 MGWNSWNHFYCG----------INEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSRD 60
Query: 61 FNGRLQADAKRFPRGIADLSNYV 83
G + + FP GI L++YV
Sbjct: 61 SQGNFVPNRQTFPSGIKALADYV 83
>3cc1_A BH1870 protein, putative alpha-N-acetylgalactosaminidase;
structural genomic center for structural genomics, JCSG;
HET: MSE PGE PG4 P33; 2.00A {Bacillus halodurans c-125}
Length = 433
Score = 74.5 bits (182), Expect = 1e-17
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 29/101 (28%)
Query: 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
MGW +W+ + + ++E A+ + + G+EYI +D W + T +
Sbjct: 14 MGWNSWDCYGAS----------VTEEEVLGNAEYMAN-HLKKYGWEYIVVDIQWYEPTAN 62
Query: 61 -------------FNGRLQADAKRFP-----RGIADLSNYV 83
GRL RFP G LS+ +
Sbjct: 63 SSAYNPFAPLCMDEYGRLLPATNRFPSAKNGAGFKPLSDAI 103
>2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD;
1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A*
2xn0_A*
Length = 732
Score = 46.2 bits (109), Expect = 1e-07
Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 18/86 (20%)
Query: 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
+ WE + +E +T+ D +G E +DD W
Sbjct: 335 VLVNNWEATYFD----------FNEDKLKTIVD-----KAKKLGLEMFVLDDGWFGHRDD 379
Query: 61 FNGRL---QADAKRFPRGIADLSNYV 83
N L + K+FP G+ ++YV
Sbjct: 380 DNSSLGDWKVYKKKFPNGLGHFADYV 405
>3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein
structure initiati northeast structural genomics
consortium, hydrolase; 2.70A {Lactobacillus brevis}
Length = 745
Score = 42.0 bits (98), Expect = 3e-06
Identities = 17/86 (19%), Positives = 26/86 (30%), Gaps = 18/86 (20%)
Query: 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
+ WE + +E T+ + +G E +DD W
Sbjct: 332 VLINNWEATYFD----------FNEAKLMTIVNQA-----KRLGIEMFVLDDGWFGHRDD 376
Query: 61 FN---GRLQADAKRFPRGIADLSNYV 83
G D ++FP GI S V
Sbjct: 377 DTTSLGDWFVDQRKFPDGIEHFSQAV 402
>2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL;
1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A*
Length = 720
Score = 36.2 bits (83), Expect = 4e-04
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 18/86 (20%)
Query: 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
+ +WE + + +A A++G + + +DD W K
Sbjct: 331 VLINSWEAAYFD----------FTGDTIVDLAKEA-----ASLGIDMVVMDDGWFGKRND 375
Query: 61 FNGRL---QADAKRFPRGIADLSNYV 83
N L Q + + +A+L V
Sbjct: 376 DNSSLGDWQVNETKLGGSLAELITRV 401
>1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for
structural genomics, JCSG, prote structure initiative,
PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP:
b.30.5.11 c.1.8.13
Length = 564
Score = 30.4 bits (68), Expect = 0.048
Identities = 11/83 (13%), Positives = 23/83 (27%), Gaps = 20/83 (24%)
Query: 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
GW +W + + ++ L +E IDD +
Sbjct: 197 TGWCSWYHYFLD----------LTWEETLKNLKLA-----KNFPFEVFQIDDAYE----K 237
Query: 61 FNGRLQADAKRFPRGIADLSNYV 83
G FP + +++ +
Sbjct: 238 DIGDWLVTRGDFP-SVEEMAKVI 259
>2jpf_A Hypothetical protein; all alpha helical protein, type III
secretion effector protein, structural genomics; NMR
{Bordetella parapertussis}
Length = 127
Score = 25.9 bits (56), Expect = 1.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 47 YINIDDCWLDKTRSFNGRLQADAKRFPRGIADL 79
+ N+D WLD R+ + LQ D K + + + DL
Sbjct: 32 HANLDVKWLDGLRAGSMALQGDVKVWMQNLEDL 64
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate
synthase; menaquinone, THDP, Mg, vitamin K2,
carboxylase, magnesium; HET: AKG; 1.95A {Escherichia
coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Length = 556
Score = 25.9 bits (57), Expect = 1.7
Identities = 6/35 (17%), Positives = 11/35 (31%)
Query: 38 EGYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRF 72
Y ++ + LD RL A+ +
Sbjct: 299 ASCEPEEYWIVDDIEGRLDPAHHRGRRLIANIADW 333
>3on4_A Transcriptional regulator, TETR family; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics; HET: MSE; 1.85A {Legionella
pneumophila subsp}
Length = 191
Score = 25.4 bits (56), Expect = 2.0
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 25 ERLFRTMADLVVSEGYAAVGYEYI 48
ER+ L+ +GY A ++ I
Sbjct: 13 ERILAVAEALIQKDGYNAFSFKDI 36
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 26.0 bits (57), Expect = 2.0
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 10/51 (19%)
Query: 3 WLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDC 53
W ++F D +D + + ++ Y +EYI I +
Sbjct: 584 WAKVQKFYQKNDTLDDLNSVFIS-----QSGYLLQ--Y---KFEYIGIPER 624
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas
aeruginosa}
Length = 197
Score = 24.6 bits (54), Expect = 4.6
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 25 ERLFRTMADLVVSEGYAAVGYEYI 48
+ L T ++ +G++ VG I
Sbjct: 13 QHLLDTGYRIMAVKGFSGVGLNEI 36
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 24.2 bits (52), Expect = 5.7
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 14/59 (23%)
Query: 7 ERFRCNTDCKNDPENCISERLFRTMADLVVSE-GYAAVGYEYINIDDC--WLDKTRSFN 62
C +CK P + + D+V + G V + + +D W R+F+
Sbjct: 20 IVLTCP-ECKVYPPKIVER---FSEGDVVCALCGL--VLSDKL-VDTRSEW----RTFS 67
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter
pomeroyi DSS, structural genomics, PSI-2, protein
structure initiative; HET: MES; 1.90A {Silicibacter
pomeroyi}
Length = 194
Score = 24.2 bits (53), Expect = 6.1
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 25 ERLFRTMADLVVSEGYAAVGYEYI 48
+++ +L +G+A + I
Sbjct: 11 DQIVAAADELFYRQGFAQTSFVDI 34
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural
genomics, PSI, protein structure initiative; 2.00A
{Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Length = 191
Score = 24.2 bits (53), Expect = 6.7
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 25 ERLFRTMADLVVSEGYAAVG 44
E++ T + L +GY A G
Sbjct: 9 EKILHTASRLSQLQGYHATG 28
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928,
PSI-2, protein structur initiative; 2.30A {Rhodobacter
sphaeroides 2}
Length = 222
Score = 23.9 bits (52), Expect = 8.2
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 25 ERLFRTMADLVVSEGYAAVGYEYI 48
+ L R + + +GY++VG + I
Sbjct: 33 QSLIRAGLEHLTEKGYSSVGVDEI 56
>3a24_A Alpha-galactosidase; glycoside hydrolase family 97, retaining
glycosidase; HET: MES; 2.30A {Bacteroides
thetaiotaomicron}
Length = 641
Score = 23.8 bits (51), Expect = 8.9
Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 1 MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
G +AW+ + D ++ ++ D +A G EY+ +D+ W ++
Sbjct: 284 PGKVAWDWWNDWNLDGVDFVTGVNNPTYKAYIDFA-----SANGIEYVILDEGWAVNLQA 338
Query: 61 FNGRLQADAKRFPRGIADLSNY 82
++ + + +L +Y
Sbjct: 339 DLMQVVKE-----IDLKELVDY 355
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.454
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,415,087
Number of extensions: 68221
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 25
Length of query: 85
Length of database: 6,701,793
Length adjustment: 53
Effective length of query: 32
Effective length of database: 5,221,980
Effective search space: 167103360
Effective search space used: 167103360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.6 bits)