RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10252
         (85 letters)



>d1r46a2 c.1.8.1 (A:32-323) Melibiase {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 292

 Score = 99.1 bits (246), Expect = 1e-27
 Identities = 51/83 (61%), Positives = 63/83 (75%)

Query: 1  MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
          MGWL WERF CN DC+ +P++CISE+LF  MA+L+VSEG+   GYEY+ IDDCW+   R 
Sbjct: 11 MGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMAPQRD 70

Query: 61 FNGRLQADAKRFPRGIADLSNYV 83
            GRLQAD +RFP GI  L+NYV
Sbjct: 71 SEGRLQADPQRFPHGIRQLANYV 93


>d1ktba2 c.1.8.1 (A:1-293) Melibiase {Chicken (Gallus gallus)
          [TaxId: 9031]}
          Length = 293

 Score = 97.2 bits (241), Expect = 6e-27
 Identities = 50/84 (59%), Positives = 60/84 (71%)

Query: 1  MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
          MGWLAWERFRCN +C+ DP  CISE LF  MAD +  +G+  +GY+YINIDDCW  K R 
Sbjct: 11 MGWLAWERFRCNVNCREDPRQCISEMLFMEMADRIAEDGWRELGYKYINIDDCWAAKQRD 70

Query: 61 FNGRLQADAKRFPRGIADLSNYVS 84
            GRL  D +RFPRGI  L++YV 
Sbjct: 71 AEGRLVPDPERFPRGIKALADYVH 94


>d1szna2 c.1.8.1 (A:1-314) Melibiase {Trichoderma reesei [TaxId:
          51453]}
          Length = 314

 Score = 76.1 bits (186), Expect = 7e-19
 Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 10/84 (11%)

Query: 1  MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
          +GW +W  + C+          I E  F + A+L+VS G    GY Y+NIDDCW  K   
Sbjct: 14 LGWNSWNAYHCD----------IDESKFLSAAELIVSSGLLDAGYNYVNIDDCWSMKDGR 63

Query: 61 FNGRLQADAKRFPRGIADLSNYVS 84
           +G +  +A RFP GI  L+  V 
Sbjct: 64 VDGHIAPNATRFPDGIDGLAKKVH 87


>d1uasa2 c.1.8.1 (A:1-273) Melibiase {Rice (Oryza sativa) [TaxId:
          4530]}
          Length = 273

 Score = 75.2 bits (184), Expect = 1e-18
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 10/83 (12%)

Query: 1  MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
          MGW +W  F C           I+E++ R  AD +V+ G A +GY+Y+NIDDCW + +R 
Sbjct: 11 MGWNSWNHFYCG----------INEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSRD 60

Query: 61 FNGRLQADAKRFPRGIADLSNYV 83
            G    + + FP GI  L++YV
Sbjct: 61 SQGNFVPNRQTFPSGIKALADYV 83


>d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic
          domain {Thermotoga maritima [TaxId: 2336]}
          Length = 348

 Score = 42.5 bits (99), Expect = 9e-07
 Identities = 9/83 (10%), Positives = 22/83 (26%), Gaps = 20/83 (24%)

Query: 1  MGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRS 60
           GW +W  +  +          ++                    +E   IDD +      
Sbjct: 8  TGWCSWYHYFLD----------LTWEETLKNLK-----LAKNFPFEVFQIDDAYEKDIGD 52

Query: 61 FNGRLQADAKRFPRGIADLSNYV 83
          +          FP  + +++  +
Sbjct: 53 W----LVTRGDFP-SVEEMAKVI 70


>d1q59a_ f.1.4.1 (A:) Early antigen protein R {Epstein-Barr virus
           [TaxId: 10376]}
          Length = 172

 Score = 25.4 bits (55), Expect = 0.87
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 1   MGWLAWERFRCNTDCKND 18
           + W+AW    C T C N 
Sbjct: 102 LAWMAWCMHACRTLCCNQ 119


>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli
           [TaxId: 562]}
          Length = 180

 Score = 23.2 bits (49), Expect = 5.7
 Identities = 5/46 (10%), Positives = 12/46 (26%)

Query: 9   FRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCW 54
           F             + ER+  +   +V+S+    +           
Sbjct: 66  FLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRA 111


>d1su7a_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
           {Carboxydothermus hydrogenoformans [TaxId: 129958]}
          Length = 633

 Score = 23.2 bits (50), Expect = 6.5
 Identities = 8/30 (26%), Positives = 13/30 (43%)

Query: 9   FRCNTDCKNDPENCISERLFRTMADLVVSE 38
            R +  C  D +N +   L  ++ADL    
Sbjct: 192 HRTSMGCDADAQNLLLGGLRCSLADLAGCY 221


>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179
          {Rhodococcus sp. [TaxId: 1831]}
          Length = 69

 Score = 22.0 bits (47), Expect = 9.3
 Identities = 5/24 (20%), Positives = 8/24 (33%)

Query: 25 ERLFRTMADLVVSEGYAAVGYEYI 48
          ERL   + D+    G        +
Sbjct: 4  ERLAAALFDVAAESGLEGASVREV 27


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.454 

Gapped
Lambda     K      H
   0.267   0.0688    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 354,349
Number of extensions: 13606
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 11
Length of query: 85
Length of database: 2,407,596
Length adjustment: 50
Effective length of query: 35
Effective length of database: 1,721,096
Effective search space: 60238360
Effective search space used: 60238360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.0 bits)