BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10256
(96 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213)
Length = 213
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASILE 61
LK LDRE+IA YTL +H + A E I +T+TD NDN PEF + S++E
Sbjct: 60 LKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQNDNKPEFTQEVFKGSVME 119
Query: 62 NAEIG-SLSTVNAT 74
A G S+ V AT
Sbjct: 120 GALPGTSVMEVTAT 133
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant
pdb|3Q2L|B Chain B, Mouse E-Cadherin Ec1-2 V81d Mutant
Length = 213
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASILE 61
LK + LDRE IA+Y L +H + A E I +T+TD NDN PEF + S+ E
Sbjct: 60 LKVTQPLDREAIAKYILYSHADSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 62 NAEIG-SLSTVNAT 74
A G S+ V+AT
Sbjct: 120 GAVPGTSVMKVSAT 133
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a
pdb|3LNH|B Chain B, Crystal Structure Of E-Cadherin Ec12 W2a
Length = 213
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASILE 61
LK + LDRE IA+Y L +H + A E I +T+TD NDN PEF + S+ E
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 62 NAEIG-SLSTVNAT 74
A G S+ V+AT
Sbjct: 120 GAVPGTSVMKVSAT 133
>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a
pdb|3LNF|B Chain B, Crystal Structure Of E-Cadherin Ec12 K14ew2a
Length = 213
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASILE 61
LK + LDRE IA+Y L +H + A E I +T+TD NDN PEF + S+ E
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 62 NAEIG-SLSTVNAT 74
A G S+ V+AT
Sbjct: 120 GAVPGTSVMKVSAT 133
>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The
Calcium Bound State, Nmr, 20 Structures
Length = 146
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASILE 61
LK + LDRE IA+Y L +H + A E I +T+TD NDN PEF + S+ E
Sbjct: 62 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 121
Query: 62 NAEIG-SLSTVNAT 74
A G S+ V+AT
Sbjct: 122 GAVPGTSVMKVSAT 135
>pdb|1Q1P|A Chain A, E-Cadherin Activation
Length = 212
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASILE 61
LK + LDRE IA+Y L +H + A E I +T+TD NDN PEF + S+ E
Sbjct: 59 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 118
Query: 62 NAEIG-SLSTVNAT 74
A G S+ V+AT
Sbjct: 119 GAVPGTSVMKVSAT 132
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2
Length = 213
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASILE 61
LK + LDRE IA+Y L +H + A E I +T+TD NDN PEF + S+ E
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 62 NAEIG-SLSTVNAT 74
A G S+ V+AT
Sbjct: 120 GAVPGTSVMKVSAT 133
>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
pdb|3QRB|B Chain B, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
Length = 213
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASILE 61
LK + LDRE IA+Y L +H + A E I +T+TD NDN PEF + S+ E
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 62 NAEIG-SLSTVNAT 74
A G S+ V+AT
Sbjct: 120 GAVPGTSVMKVSAT 133
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension
pdb|3LNG|B Chain B, Crystal Structure Of E-Cadherin Ec12 Aa Extension
Length = 215
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASILE 61
LK + LDRE IA+Y L +H + A E I +T+TD NDN PEF + S+ E
Sbjct: 62 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 121
Query: 62 NAEIG-SLSTVNAT 74
A G S+ V+AT
Sbjct: 122 GAVPGTSVMKVSAT 135
>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant
pdb|3Q2N|B Chain B, Mouse E-Cadherin Ec1-2 L175d Mutant
Length = 213
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASILE 61
LK + LDRE IA+Y L +H + A E I +T+TD NDN PEF + S+ E
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 62 NAEIG-SLSTVNAT 74
A G S+ V+AT
Sbjct: 120 GAVPGTSVMKVSAT 133
>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e
Length = 213
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASILE 61
LK + LDRE IA+Y L +H + A E I +T+TD NDN PEF + S+ E
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 62 NAEIG-SLSTVNAT 74
A G S+ V+AT
Sbjct: 120 GAVPGTSVMKVSAT 133
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain
pdb|1FF5|B Chain B, Structure Of E-Cadherin Double Domain
Length = 219
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASILE 61
LK + LDRE IA+Y L +H + A E I +T+TD NDN PEF + S+ E
Sbjct: 61 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 120
Query: 62 NAEIG-SLSTVNAT 74
A G S+ V+AT
Sbjct: 121 GAVPGTSVMKVSAT 134
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 7 GLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNA 47
GLDRE YTL D + +T+ DINDNA
Sbjct: 179 GLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNA 219
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium
pdb|1EDH|B Chain B, E-Cadherin Domains 1 And 2 In Complex With Calcium
Length = 226
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASILE 61
LK + LDRE IA+Y L +H + A E I +T+TD NDN PEF + S+ E
Sbjct: 62 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 121
Query: 62 NAEIG-SLSTVNAT 74
A G S+ V+AT
Sbjct: 122 GAVPGTSVMKVSAT 135
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 21/44 (47%)
Query: 7 GLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEF 50
GLDRE YTL D + +T+ DINDNAP F
Sbjct: 180 GLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVF 223
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain
pdb|3Q2V|B Chain B, Crystal Structure Of Mouse E-Cadherin Ectodomain
Length = 550
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASILE 61
LK + LDRE IA+Y L +H + A E I +T+TD NDN PEF + S+ E
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 62 NAEIG-SLSTVNAT 74
A G S+ V+AT
Sbjct: 120 GAVPGTSVMKVSAT 133
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 29/68 (42%)
Query: 7 GLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASILENAEIG 66
GLDRE YTL D + +T+ DINDNAP F + EN
Sbjct: 178 GLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENEVNA 237
Query: 67 SLSTVNAT 74
++T+ T
Sbjct: 238 RIATLKVT 245
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRD 26
LKTA+GLD E +Y L+ V++ +
Sbjct: 282 LKTAKGLDFEAKQQYILHVRVENEE 306
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a
pdb|3LNI|B Chain B, Crystal Structure Of E-Cadherin Ec12 E89a
Length = 213
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASILE 61
LK + LDRE IA+Y L +H + A I +T+TD NDN PEF + S+ E
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVADPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 62 NAEIG-SLSTVNAT 74
A G S+ V+AT
Sbjct: 120 GAVPGTSVMKVSAT 133
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
pdb|3PPE|B Chain B, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
Length = 203
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 8 LDREKIARYTLNAHVQDR-DQPAWECVSLITLTLTDINDNAPEFASVINSASILENAEIG 66
LDREK A Y L AH+ DR + + E S + ++DINDNAP F I + S+ E + +G
Sbjct: 61 LDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLG 120
Query: 67 -SLSTVNA 73
S++ V A
Sbjct: 121 TSVTKVTA 128
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2
Length = 215
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRD-QPAWECVSLITLTLTDINDNAPEFASVINSASIL 60
+ + LDRE+ A+YTL A DRD E S + + DINDN PEF I A++
Sbjct: 58 IHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVP 117
Query: 61 ENAEIGS 67
E + +G+
Sbjct: 118 ERSNVGT 124
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12
Length = 215
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASIL 60
+L + LDRE IAR+ L AH D + E I + + D+NDN PEF + + S+
Sbjct: 59 QLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVP 118
Query: 61 ENAEIGS 67
E ++ G+
Sbjct: 119 EGSKPGT 125
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 2 LKTARGLDREKIARYTL 18
+ A GLDREK+ +YTL
Sbjct: 172 ITVAAGLDREKVQQYTL 188
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASIL 60
+L + LDRE IAR+ L AH D + E I + + D+NDN PEF + + S+
Sbjct: 59 QLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVP 118
Query: 61 ENAEIGS 67
E ++ G+
Sbjct: 119 EGSKPGT 125
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 2 LKTARGLDREKIARYTL 18
+ A GLDREK+ +YTL
Sbjct: 172 ITVAAGLDREKVQQYTL 188
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASIL 60
+L + LDRE IAR+ L AH D + E I + + D+NDN PEF + + S+
Sbjct: 59 QLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVP 118
Query: 61 ENAEIGS-LSTVNA 73
E ++ G+ + TV A
Sbjct: 119 EGSKPGTYVMTVTA 132
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRD-QPAWECVSLIT--LTLTDINDNAPEFASVINSAS 58
+ A GLDREK+ +YTL D + P + + T +T+TD+NDN PEF ++
Sbjct: 172 ITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGE 231
Query: 59 ILEN 62
+ EN
Sbjct: 232 VPEN 235
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3
Length = 322
Score = 42.4 bits (98), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 1 ELKTARGLDREKIARYTLNAHVQD-RDQPAWECVSLITLTLTDINDNAPEFASVINSASI 59
++ + LDRE+ A YTL A D E S + + DINDNAPEF + A++
Sbjct: 56 DIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATV 115
Query: 60 LENAEIG-SLSTVNAT 74
E + +G S++ V AT
Sbjct: 116 PEMSILGTSVTNVTAT 131
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 42 DINDNAPEFASVINSASILENAEIGS 67
D+NDN P+FA + S+ E+ +G+
Sbjct: 207 DVNDNPPKFAQSLYHFSVPEDVVLGT 232
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 7 GLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASILENAEIG 66
GLDREK YTL D + + +TD NDNAP F +A + EN EIG
Sbjct: 333 GLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIG 391
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 6 RGLDREKIARYTLNAH-VQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASILENAE 64
R LDRE+ +Y L++H V + P E + IT+ + D NDN P+F + S+ E +
Sbjct: 219 RPLDREEYDKYVLSSHAVSENGSPVEEPME-ITINVIDQNDNRPKFTQDVFRGSVREGVQ 277
Query: 65 IGS-LSTVNAT 74
G+ + V+AT
Sbjct: 278 PGTQVMAVSAT 288
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 7 GLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASILENAEIG 66
GLDREK YTL D + + +TD NDNAP F +A + EN EIG
Sbjct: 184 GLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIG 242
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 6 RGLDREKIARYTLNAH-VQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASILENAE 64
R LDRE+ +Y L++H V + P E + IT+ + D NDN P+F + S+ E +
Sbjct: 70 RPLDREEYDKYVLSSHAVSENGSPVEEPME-ITINVIDQNDNRPKFTQDVFRGSVREGVQ 128
Query: 65 IGS-LSTVNAT 74
G+ + V+AT
Sbjct: 129 PGTQVMAVSAT 139
>pdb|1NCH|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCH|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCG|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
Length = 110
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEF 50
+L + LDRE IAR+ L AH D + E I + + D+NDN PEF
Sbjct: 61 QLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
Length = 207
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDR--DQPAWECVSLITLTLTDINDNAPEFASVINSAS 58
+++ + LDRE+ Y L A +R +P E S + + DINDN P F + +A+
Sbjct: 56 DIQATKRLDREEKPVYILRAQAVNRRTGRPV-EPESEFIIKIHDINDNEPIFTKDVYTAT 114
Query: 59 ILENAEIGSL 68
+ E A++G+
Sbjct: 115 VPEMADVGTF 124
>pdb|2OMX|B Chain B, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 108
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDN 46
LK LDRE+IA YTL +H + A E I +T+TD NDN
Sbjct: 64 LKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQNDN 108
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23
Length = 210
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 6 RGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASILENAEI 65
+ LDRE + +T+ V D + + + D+NDNAP F + S I EN +
Sbjct: 68 QPLDRETKSEFTVEFSVSDH---QGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPV 124
Query: 66 GS-LSTVNAT 74
G+ + VNAT
Sbjct: 125 GTPIFIVNAT 134
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 6 RGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASILENAEI 65
+ LDRE + +T+ V D + + + D+NDNAP F + S I EN +
Sbjct: 69 QPLDRETKSEFTVEFSVSDH---QGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPV 125
Query: 66 GS-LSTVNAT 74
G+ + VNAT
Sbjct: 126 GTPIFIVNAT 135
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2
pdb|2WHV|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 (all Cation
Binding Sites Occupied By Calcium)
pdb|4APX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AXW|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 214
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 6 RGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASILENAEI 65
+ LDRE + +T+ V D + + + D+NDNAP F + S I EN +
Sbjct: 69 QPLDRETKSEFTVEFSVSDH---QGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPV 125
Query: 66 GS-LSTVNAT 74
G+ + VNAT
Sbjct: 126 GTPIFIVNAT 135
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
pdb|3K5S|B Chain B, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
Length = 217
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASIL 60
++ R LDRE IA Y L V D + + +++ D NDN P F ++
Sbjct: 58 DVSVTRPLDREAIANYQLEVEVTDLSGKIIDGPVRLDISVIDQNDNRPMFKEGPYVGHVM 117
Query: 61 ENAEIGS 67
E + G+
Sbjct: 118 EGSPTGT 124
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|2WD0|C Chain C, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|4AQA|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 32.0 bits (71), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 6 RGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASILENAEI 65
+ LDRE + +T+ V D + + + +NDNAP F + S I EN +
Sbjct: 69 QPLDRETKSEFTVEFSVSDHQ---GVITRKVNIQVGGVNDNAPTFHNQPYSVRIPENTPV 125
Query: 66 GS-LSTVNAT 74
G+ + VNAT
Sbjct: 126 GTPIFIVNAT 135
>pdb|1O6S|B Chain B, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|2OMV|B Chain B, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMY|B Chain B, Crystal Structure Of Inla S192n/hec1 Complex
pdb|2OMT|B Chain B, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
pdb|2OMU|B Chain B, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
pdb|2OMZ|B Chain B, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 105
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTD 42
LK LDRE+IA YTL +H + A E I +T+TD
Sbjct: 64 LKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 104
>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
pdb|3K5R|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
Length = 218
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 27/66 (40%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASILE 61
+ R LDRE IA Y L D E + + + D NDN P F ++E
Sbjct: 60 VSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVME 119
Query: 62 NAEIGS 67
+ G+
Sbjct: 120 GSPTGT 125
>pdb|3FF8|A Chain A, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
pdb|3FF8|B Chain B, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
Length = 101
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTD 42
LK LDRE+IA YTL +H + A E I +T+TD
Sbjct: 61 LKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 101
>pdb|2OMW|B Chain B, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 105
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTD 42
LK + LDRE IA+Y L +H + A E I +T+TD
Sbjct: 64 LKVTQPLDREAIAKYILYSHAVSSNGNAVEDPMEIVITVTD 104
>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human
Protocadherin 7
Length = 119
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 8 LDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAP 48
+DRE++ + +DR QP + + L + D NDN P
Sbjct: 79 IDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 44 NDNAPEFASVINSASILENAEIGS----LSTVNATIGVN 78
NDN+P F + A + EN+ G+ L + +GVN
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVN 46
>pdb|3FF7|A Chain A, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
pdb|3FF7|B Chain B, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
Length = 100
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLT 41
LK LDRE+IA YTL +H + A E I +T+T
Sbjct: 61 LKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVT 100
>pdb|2V37|A Chain A, Solution Structure Of The N-Terminal Extracellular Domain
Of Human T-Cadherin
Length = 105
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAP 48
+ R LDRE IA Y L D + E + + + D NDN P
Sbjct: 59 VSVTRTLDREVIAVYQLFVETTDVNGKTLEGPVPLEVIVIDQNDNRP 105
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 9/15 (60%), Positives = 14/15 (93%)
Query: 36 ITLTLTDINDNAPEF 50
+T+ +TD+NDNAP+F
Sbjct: 310 LTIRVTDVNDNAPKF 324
>pdb|3G1T|A Chain A, Crystal Structure Of Short Chain Dehydrogenase From
Salmonella Enterica Subsp. Enterica Serovar Typhi Str.
Ct18
Length = 258
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 7 GLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTD-------INDNAPEFASVINSASI 59
G + EK+ R + + QP W + L+T T + I + P V+++A +
Sbjct: 45 GRNEEKLRRVAQHIADEQHVQPQWFTLDLLTCTAEECRQVADRIAAHYPRLDGVLHNAGL 104
Query: 60 LENAEIGSLSTVNATI 75
L EIG +S + I
Sbjct: 105 L--GEIGPMSEQDPQI 118
>pdb|2A4C|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1
pdb|2A4C|B Chain B, Crystal Structure Of Mouse Cadherin-11 Ec1
Length = 99
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRD 26
+ + LDRE+ A+YTL A DRD
Sbjct: 58 IHATKTLDREERAQYTLMAQAVDRD 82
>pdb|2YUJ|A Chain A, Solution Structure Of Human Ubiquitin Fusion Degradation
Protein 1 Homolog Ufd1
Length = 190
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 31 ECVSLITLTLTDINDNAPEFASVINSASILENA 63
E V+L T + +P+F + N ++LENA
Sbjct: 110 ESVNLQVATYSKFQPQSPDFLDITNPKAVLENA 142
>pdb|3IAH|A Chain A, Crystal Structure Of Short Chain Dehydrogenase (ycik) From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
Str. Lt2 In Complex With Nadp And Acetate.
pdb|3IAH|B Chain B, Crystal Structure Of Short Chain Dehydrogenase (ycik) From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
Str. Lt2 In Complex With Nadp And Acetate
Length = 256
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 7 GLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTD-------INDNAPEFASVINSASI 59
G + EK+ R + + QP W + L+T T + I + P V+++A +
Sbjct: 46 GRNEEKLRRVAQHIADEQHVQPQWFTLDLLTCTAEECRQVADRIAAHYPRLDGVLHNAGL 105
Query: 60 LENAEIGSLSTVNATI 75
L EIG S + I
Sbjct: 106 L--GEIGPXSEQDPQI 119
>pdb|4EI7|A Chain A, Crystal Structure Of Bacillus Cereus Tubz, Gdp-Form
pdb|4EI7|B Chain B, Crystal Structure Of Bacillus Cereus Tubz, Gdp-Form
pdb|4EI9|A Chain A, Crystal Structure Of Bacillus Cereus Tubz, Gtp-Form
pdb|4EI9|B Chain B, Crystal Structure Of Bacillus Cereus Tubz, Gtp-Form
Length = 389
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 29 AWECVSLITLTLTDIND---NAPEFASVINSASILENAEI 65
A ++L+T + T +D +A EFA VIN+ +L A++
Sbjct: 215 ALHEINLVTSSFTPFSDTHFDASEFAQVINTPGVLSLAKL 254
>pdb|4EI8|A Chain A, Crystal Structure Of Bacillus Cereus Tubz, Apo-Form
Length = 389
Score = 25.4 bits (54), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 29 AWECVSLITLTLTDIND---NAPEFASVINSASILENAEI 65
A ++L+T + T +D +A EFA VIN+ +L A++
Sbjct: 215 ALHEINLVTSSFTPFSDTHFDASEFAQVINTPGVLSLAKL 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,542,703
Number of Sequences: 62578
Number of extensions: 76488
Number of successful extensions: 224
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 148
Number of HSP's gapped (non-prelim): 74
length of query: 96
length of database: 14,973,337
effective HSP length: 62
effective length of query: 34
effective length of database: 11,093,501
effective search space: 377179034
effective search space used: 377179034
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)