RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10256
(96 letters)
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 85.5 bits (212), Expect = 3e-21
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASIL 60
+L + LDRE IAR+ L AH D + E I + + D+NDN PEF + + S+
Sbjct: 59 QLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVP 118
Query: 61 ENAEIGSL-STVNAT 74
E ++ G+ TV A
Sbjct: 119 EGSKPGTYVMTVTAI 133
Score = 59.7 bits (145), Expect = 3e-12
Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 7/78 (8%)
Query: 1 ELKTARGLDRE----KIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINS 56
++ T LDRE K Y D P + + L DINDNAP+
Sbjct: 393 QITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLP--QE 450
Query: 57 ASILENAEIGSLSTVNAT 74
A E E S+ + A
Sbjct: 451 AETCETPEPNSI-NITAL 467
Score = 58.9 bits (143), Expect = 5e-12
Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRD------QPAWECVSLITLTLTDINDNAPEFASVIN 55
+ + +D E + L +++ Q + + +++T+ D+N+N P FA
Sbjct: 285 VTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPK 343
Query: 56 SASILENAEIGS-LSTVNAT 74
E G+ L+T+ A
Sbjct: 344 IIRQEEGLHAGTMLTTLTAQ 363
Score = 57.4 bits (139), Expect = 2e-11
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 1 ELKTARG-LDREKIARYTLNAHVQDRDQPAWECVS---LITLTLTDINDNAPEFASVINS 56
++ T LDREK+ +YTL D + +S +T+TD+NDN PEF ++
Sbjct: 170 DIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFY 229
Query: 57 ASILENA---EIGSLSTVNATIGVN 78
+ EN + +L+ +
Sbjct: 230 GEVPENRVDVIVANLTVTDKDQPHT 254
Score = 46.2 bits (110), Expect = 2e-07
Identities = 5/49 (10%), Positives = 15/49 (30%)
Query: 4 TARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFAS 52
+ + Y + + D P +S++ + + + N
Sbjct: 505 LNLKIKFLEAGIYEVPIIITDSGNPPKSNISILRVKVCQCDSNGDCTDV 553
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 83.9 bits (208), Expect = 8e-21
Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASIL 60
LK + LDRE IA+Y L +H + A E I +T+TD NDN PEF + S+
Sbjct: 59 WLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVA 118
Query: 61 ENAEIGSL-STVNAT 74
E A G+ V+AT
Sbjct: 119 EGAVPGTSVMKVSAT 133
Score = 60.8 bits (148), Expect = 1e-12
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRD---QPAWECVSLITLTLTDINDNAPEFASVINSAS 58
LKTA+GLD E +Y L+ V++ + + +T+ + D+N+ AP F
Sbjct: 282 LKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAERRVE 340
Query: 59 ILENAEIG-SLSTVNAT 74
+ E+ +G +++ A
Sbjct: 341 VPEDFGVGQEITSYTAR 357
Score = 60.4 bits (147), Expect = 2e-12
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 1 ELKTARG-LDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASI 59
+ LDRE YTL D + +T+ DINDNAP F +
Sbjct: 171 VISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQV 230
Query: 60 LENAEIGSLSTVNAT 74
EN ++T+ T
Sbjct: 231 PENEVNARIATLKVT 245
Score = 51.9 bits (125), Expect = 2e-09
Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 9/79 (11%)
Query: 1 ELKTARGLDRE-----KIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVIN 55
+ T +DRE K + Y D P + L L D+NDNAP
Sbjct: 387 AIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEP--R 444
Query: 56 SASILENAEIGSLSTVNAT 74
+ + + +
Sbjct: 445 NMQFCQRNPQPHI--ITIL 461
Score = 45.0 bits (107), Expect = 4e-07
Identities = 6/52 (11%), Positives = 15/52 (28%), Gaps = 2/52 (3%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFAS 52
E + +I Y ++ + D V+ + + + D
Sbjct: 494 ESLILQPRKDLEIGEYKIHLKLADNQNKD--QVTTLDVHVCDCEGTVNNCMK 543
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 84.2 bits (208), Expect = 1e-20
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASIL 60
+ R LDRE+ +Y L++H + E IT+ + D NDN P+F + S+
Sbjct: 214 WMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVR 273
Query: 61 ENAEIGSL-STVNAT 74
E + G+ V+AT
Sbjct: 274 EGVQPGTQVMAVSAT 288
Score = 61.8 bits (150), Expect = 6e-13
Identities = 22/71 (30%), Positives = 30/71 (42%)
Query: 4 TARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASILENA 63
GLDREK YTL D + + +TD NDNAP F +A + EN
Sbjct: 330 IGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENE 389
Query: 64 EIGSLSTVNAT 74
+ ++ T
Sbjct: 390 IGFEVQRLSVT 400
Score = 57.2 bits (138), Expect = 2e-11
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRD---QPAWECVSLITLTLTDINDNAPEFASVINSAS 58
L TA+GLD E +Y L V++ + P + +T+T+ D+N+ P F ++
Sbjct: 437 LTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVD 495
Query: 59 ILENAEIGS-LSTVNAT 74
+ E+ G + ++ A
Sbjct: 496 VSEDLSRGEKIISLVAQ 512
Score = 51.8 bits (124), Expect = 2e-09
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 1 ELKTARGLDRE----KIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINS 56
+ LDRE K YT+ V D + L + D+NDN P + + +
Sbjct: 542 IVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFT 601
Query: 57 ASILENA 63
Sbjct: 602 MCDQNPE 608
Score = 41.4 bits (97), Expect = 8e-06
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 35 LITLTLTDINDNAPEFASVINSASILE-NAEIGSL-STVNAT 74
++ D++ P F+S S+ E G VN +
Sbjct: 22 VVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFS 63
Score = 38.3 bits (89), Expect = 1e-04
Identities = 8/79 (10%), Positives = 23/79 (29%), Gaps = 4/79 (5%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFAS--VINSAS 58
+ K Y++ + D ++++ T+ A + V
Sbjct: 647 TSMLLSPTQQLKKGDYSIYVLLSDAQNNP--QLTVVNATVCSCEGKAIKCQEKLVGGFDL 704
Query: 59 ILENAEIGSLSTVNATIGV 77
+ +GS+ + +
Sbjct: 705 PIILVILGSVLALLILFLL 723
Score = 28.7 bits (64), Expect = 0.27
Identities = 7/79 (8%), Positives = 14/79 (17%), Gaps = 8/79 (10%)
Query: 8 LDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEF-----ASVINSASILEN 62
R + + L + + VI + EN
Sbjct: 108 DARGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSEN 167
Query: 63 ---AEIGSLSTVNATIGVN 78
L + +
Sbjct: 168 ERGPFPKRLVQIKSNKDRF 186
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 80.8 bits (200), Expect = 1e-20
Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASIL 60
LK + LDRE IA+Y L +H + A E I +T+TD NDN PEF + S+
Sbjct: 59 WLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVA 118
Query: 61 ENAEIGSL-STVNAT 74
E A G+ V+AT
Sbjct: 119 EGAVPGTSVMKVSAT 133
Score = 33.5 bits (77), Expect = 0.004
Identities = 11/39 (28%), Positives = 14/39 (35%)
Query: 4 TARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTD 42
GLDRE YTL D + +T+ D
Sbjct: 175 LTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 83.5 bits (207), Expect = 1e-20
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASIL 60
+ R LDRE+ +Y L++H + E IT+ + D NDN P+F + S+
Sbjct: 65 WMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVR 124
Query: 61 ENAEIGSL-STVNAT 74
E + G+ V+AT
Sbjct: 125 EGVQPGTQVMAVSAT 139
Score = 59.2 bits (144), Expect = 4e-12
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRD---QPAWECVSLITLTLTDINDNAPEFASVINSAS 58
L TA+GLD E +Y L V++ + P + +T+T+ D+N+ P F ++
Sbjct: 288 LTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVD 346
Query: 59 ILENAEIG-SLSTVNAT 74
+ E+ G + ++ A
Sbjct: 347 VSEDLSRGEKIISLVAQ 363
Score = 58.9 bits (143), Expect = 6e-12
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 1 ELKTAR-GLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASI 59
+ GLDREK YTL D + + +TD NDNAP F +A +
Sbjct: 177 VISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALV 236
Query: 60 LENA---EIGSLS 69
EN E+ LS
Sbjct: 237 PENEIGFEVQRLS 249
Score = 51.2 bits (123), Expect = 3e-09
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 1 ELKTARGLDRE----KIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINS 56
+ LDRE K YT+ V D + L + D+NDN P + + +
Sbjct: 393 IVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFT 452
Query: 57 ASILENA 63
Sbjct: 453 MCDQNPE 459
Score = 42.7 bits (101), Expect = 3e-06
Identities = 5/50 (10%), Positives = 15/50 (30%), Gaps = 2/50 (4%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEF 50
+ K Y++ + D ++++ T+ A +
Sbjct: 498 TSMLLSPTQQLKKGDYSIYVLLSDAQNNP--QLTVVNATVCSCEGKAIKC 545
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 80.5 bits (199), Expect = 1e-20
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASIL 60
+L + LDRE IAR+ L AH D + E I + + D+NDN PEF + + S+
Sbjct: 59 QLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVP 118
Query: 61 ENAEIGSL-STVNAT 74
E ++ G+ TV A
Sbjct: 119 EGSKPGTYVMTVTAI 133
Score = 33.1 bits (76), Expect = 0.006
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 4 TARGLDREKIARYTLNAHVQDRDQPAWECVS---LITLTLTD 42
A GLDREK+ +YTL D + +S +T+TD
Sbjct: 174 VAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 78.2 bits (193), Expect = 1e-19
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASIL 60
+ R LDRE IA Y L D E + + + D NDN P F ++
Sbjct: 59 SVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVM 118
Query: 61 ENAEIG-SLSTVNAT 74
E + G ++ + A
Sbjct: 119 EGSPTGTTVMRMTAF 133
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 76.2 bits (188), Expect = 5e-19
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRD-QPAWECVSLITLTLTDINDNAPEFASVINSASI 59
+++ + LDRE+ Y L A +R E S + + DINDN P F + +A++
Sbjct: 56 DIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATV 115
Query: 60 LENAEIGSL-STVNAT 74
E A++G+ V AT
Sbjct: 116 PEMADVGTFVVQVTAT 131
Score = 30.3 bits (69), Expect = 0.061
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 1 ELKTA-RGLDREKIARYTLNAHVQDRDQP 28
+KTA +DRE +Y + +D
Sbjct: 163 IIKTALLNMDRENREQYQVVIQAKDMGGQ 191
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 75.4 bits (186), Expect = 1e-18
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDR-DQPAWECVSLITLTLTDINDNAPEFASVINSASI 59
++ LDREK A Y L AH+ DR + + E S + ++DINDNAP F I + S+
Sbjct: 54 DIYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSV 113
Query: 60 LENAEIGSL-STVNAT 74
E + +G+ + V A
Sbjct: 114 PEMSRLGTSVTKVTAE 129
Score = 33.8 bits (78), Expect = 0.003
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRD-QPAWECVSLITLTLTD 42
LDRE + Y + +D + + + LTD
Sbjct: 161 IFTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 74.2 bits (183), Expect = 3e-18
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRDQPA-WECVSLITLTLTDINDNAPEFASVINSASI 59
+ + LDRE+ A+YTL A DRD E S + + DINDN PEF I A++
Sbjct: 57 NIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANV 116
Query: 60 LENAEIGSL-STVNAT 74
E + +G+ V A+
Sbjct: 117 PERSNVGTSVIQVTAS 132
Score = 50.4 bits (121), Expect = 4e-09
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 1 ELKTA-RGLDREKIARYTLNAHVQDRD--QPAWECVSLITLTLTDINDNAPE 49
++TA +DRE Y + +D + +T+TLTD + +
Sbjct: 164 IIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDDK 215
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 74.6 bits (184), Expect = 9e-18
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRD-QPAWECVSLITLTLTDINDNAPEFASVINSASI 59
++ + LDRE+ A YTL A D + E S + + DINDNAPEF + A++
Sbjct: 56 DIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATV 115
Query: 60 LENAEIGSL-STVNAT 74
E + +G+ + V AT
Sbjct: 116 PEMSILGTSVTNVTAT 131
Score = 61.9 bits (151), Expect = 5e-13
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 4 TARGLDREKIARYTLNAHVQDRD--QPAWECVSLITLTLTDINDNAPEFASVINSASILE 61
+DRE Y + +D + +T+TLTD+NDN P+FA + S+ E
Sbjct: 167 ALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPE 226
Query: 62 NAEIG-SLSTVNAT 74
+ +G ++ V A
Sbjct: 227 DVVLGTAIGRVKAN 240
Score = 30.7 bits (70), Expect = 0.045
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRDQPA 29
++ + LD E YTL +
Sbjct: 276 IRLRKPLDFETKKSYTLKVEAANIHIDP 303
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 71.5 bits (176), Expect = 4e-17
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASIL 60
+ + LDRE + +T+ V D + + + D+NDNAP F + S I
Sbjct: 63 VVWLRQPLDRETKSEFTVEFSVSDHQGVIT---RKVNIQVGDVNDNAPTFHNQPYSVRIP 119
Query: 61 ENAEIGS-LSTVNAT---IGVN 78
EN +G+ + VNAT +G
Sbjct: 120 ENTPVGTPIFIVNATDPDLGAG 141
Score = 40.7 bits (96), Expect = 1e-05
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRDQP-AWECVSLITLTLTDINDN 46
+ + LD E Y L + D+D+ ++ + + +TD+ D
Sbjct: 163 IVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDM 209
Score = 35.3 bits (82), Expect = 0.001
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 44 NDNAPEFASVINSAS--ILENAEIGSL-STVNAT 74
+ P F + I E+ +GS + + A
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLAR 35
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 65.8 bits (161), Expect = 9e-16
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEF 50
EL LDRE+ + L + D E + + + DINDN P F
Sbjct: 71 ELNVTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVF 120
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 65.4 bits (160), Expect = 1e-15
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEF 50
+L + LDRE IAR+ L AH D + E I + + D+NDN PEF
Sbjct: 61 QLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 67.3 bits (165), Expect = 7e-15
Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 12/90 (13%)
Query: 1 ELKTARGLDREKIAR------YTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFAS-- 52
++ + D E++ + + ++ + + + + D+ND P F +
Sbjct: 56 AVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRP 115
Query: 53 VINSASILENAEIGSL-STVNAT---IGVN 78
+ A + NA + T+ A N
Sbjct: 116 LPMQAVVQLNAPPNTPVFTLQARDPDTDHN 145
Score = 62.7 bits (153), Expect = 3e-13
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 4/78 (5%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLT---DINDNAPEFASVINSA 57
++T + Y L +D++ + T AP+F A
Sbjct: 167 VVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEA 226
Query: 58 SILENAEIGSL-STVNAT 74
I EN + S ++ A
Sbjct: 227 EIPENQKKDSDIISIKAK 244
Score = 61.6 bits (150), Expect = 7e-13
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 1 ELKTARGLDREKIAR---YTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFA-SVINS 56
+K A+ LD E + + Y+L + D + +T+ +TD+NDNAP+F +
Sbjct: 273 IVKLAKELDFEDLRQPHVYSLIVTATE-DSGGFSTSVDLTIRVTDVNDNAPKFELPDYQA 331
Query: 57 ASILENAEIG-SLSTVNAT 74
++ E+ +G S+ V A
Sbjct: 332 HNVDEDIPLGTSILRVKAM 350
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 63.6 bits (155), Expect = 1e-13
Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 12/90 (13%)
Query: 1 ELKTARGLDREKIAR------YTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFA--S 52
++ + D E++ + + ++ + + + + D+ND P F
Sbjct: 51 AVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRP 110
Query: 53 VINSASILENAEIGS-LSTVNAT---IGVN 78
+ A + NA + + T+ A N
Sbjct: 111 LPMQAVVQLNAPPNTPVFTLQARDPDTDHN 140
Score = 60.9 bits (148), Expect = 1e-12
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRDQPAWECVS----LITLTLTDINDNAPEFASVINS 56
++T + Y L +D++ + L++ AP+F
Sbjct: 162 VVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYE 220
Query: 57 ASILENAEIGSL-STVNAT 74
A I EN + S ++ A
Sbjct: 221 AEIPENQKKDSDIISIKAK 239
Score = 38.1 bits (89), Expect = 1e-04
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 1 ELKTARGLDREKIAR---YTLNAHVQDRDQPAWECVSLITLTLTDINDNA 47
+K A+ LD E + + Y+L + D + +T+ +TD+NDNA
Sbjct: 268 IVKLAKELDFEDLRQPHVYSLIVTATE-DSGGFSTSVDLTIRVTDVNDNA 316
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 54.5 bits (131), Expect = 2e-10
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRD-QPAWECVSLITLTLTDINDNAPEFA 51
E+ T LDRE+ +Y L A + +T+ D +D+APEF
Sbjct: 194 EVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAPEFE 245
Score = 51.1 bits (122), Expect = 3e-09
Identities = 12/106 (11%), Positives = 22/106 (20%), Gaps = 28/106 (26%)
Query: 1 ELKTARGLDREKIARYTLNAH--------------VQDRDQPAWECVSLITLTLTDINDN 46
L R LD + ++ + + + + N +
Sbjct: 66 LLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTS 125
Query: 47 APE----------FASVINSASILENAEIGSL-STVNAT---IGVN 78
P F S I EN G+ +
Sbjct: 126 FPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQ 171
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 47.8 bits (115), Expect = 8e-09
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 39 TLTDINDNAPEFASVINSASILENAEIGSL-STVNAT---IGVN 78
+ + NDN P F I ENA +G+ ++AT IG N
Sbjct: 3 SGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSN 46
Score = 29.0 bits (66), Expect = 0.11
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDIN 44
+ R LDRE+ A + + V D + + +T+ +TD+N
Sbjct: 73 LITVQRSLDREETAIHKVT--VLASDGSSTPARATVTINVTDVN 114
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 47.5 bits (114), Expect = 1e-08
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 39 TLTDINDNAPEFASVINSASILENAEIGSL-STVNAT---IGVN 78
+ + NDN+P F + A + EN+ G+ + A +GVN
Sbjct: 3 SGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVN 46
Score = 43.2 bits (103), Expect = 5e-07
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAP 48
L +DRE++ + +DR QP + + L + D NDN P
Sbjct: 72 WLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 43.5 bits (103), Expect = 4e-07
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTD 42
LK LDRE+IA YTL +H + A E I +T+TD
Sbjct: 63 WLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 104
Score = 27.3 bits (61), Expect = 0.39
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 47 APEFASVINSASILENAEIGSLSTVNAT 74
P + VI S EN + +
Sbjct: 1 GPLGSWVIPPISCPENEKGPFPKNLVQI 28
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 41.6 bits (98), Expect = 2e-06
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTD 42
E+ + LDRE I Y L D + E + + + D
Sbjct: 58 EVSVTKALDREAIPSYQLQVETTDENGKTIEGPVDLEILVID 99
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 41.2 bits (97), Expect = 2e-06
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTD 42
+ R LDRE IA Y L D E + + + D
Sbjct: 59 SVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVID 100
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 40.5 bits (95), Expect = 4e-06
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTD 42
++ R LDRE IA Y L V D + + +++ D
Sbjct: 58 DVSVTRPLDREAIANYELEVEVTDLSGKIIDGPVRLDISVID 99
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus}
PDB: 2a4c_A
Length = 98
Score = 38.2 bits (89), Expect = 3e-05
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRD-QPAWECVSLITLTLTD 42
++ + LDRE+ A YTL A D + E S + + D
Sbjct: 56 DIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 38.1 bits (89), Expect = 4e-05
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 1 ELKTARGLDREKIARYTLNAHVQDRDQ-PAWECVSLITLTLTD 42
++ + LDRE+ ++YTL A DR E S + + D
Sbjct: 57 DIHAIQRLDREERSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.006
Identities = 26/135 (19%), Positives = 36/135 (26%), Gaps = 57/135 (42%)
Query: 6 RGLDREKIARY--TLNAHVQDRDQ-----------------PAWECVSLITLTLT----- 41
L +E++ Y N+H+ Q P SL L LT
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ----SLYGLNLTLRKAK 397
Query: 42 -----DINDNAP----------EFASVINSA----SILENAE---IGSLSTVNATIGVNR 79
D + P F V ++ +L A L N +
Sbjct: 398 APSGLDQS-RIPFSERKLKFSNRFLPV--ASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454
Query: 80 CG----HTFRGKDLR 90
TF G DLR
Sbjct: 455 IQIPVYDTFDGSDLR 469
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.029
Identities = 7/17 (41%), Positives = 10/17 (58%), Gaps = 4/17 (23%)
Query: 45 DNAPEFASVINSASILE 61
D+AP A I A++ E
Sbjct: 35 DSAPALA--IK-ATM-E 47
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Mus musculus}
Length = 125
Score = 30.3 bits (69), Expect = 0.045
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 36 ITLTLTDINDNAPEF 50
+ L D+ND+APEF
Sbjct: 101 GEIQLQDVNDHAPEF 115
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.068
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 8/48 (16%)
Query: 25 RDQPAWECVSLITLTLTD-------INDNAPEFASVINS-ASILENAE 64
D AW I TL I DN P++ ++N+ L E
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE 556
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal
transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A
3kso_A 3kss_A
Length = 1054
Score = 26.4 bits (59), Expect = 1.8
Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 8 LDREKIARYTLN-AHVQD 24
++REK ARY + A VQ
Sbjct: 735 INREKAARYGMTVADVQL 752
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 25.3 bits (56), Expect = 3.9
Identities = 6/18 (33%), Positives = 7/18 (38%), Gaps = 1/18 (5%)
Query: 75 IGVNRC-GHTFRGKDLRC 91
IG N C +RC
Sbjct: 349 IGCNICVSGDLTMSPIRC 366
>2oeb_A Hypothetical protein; unknown function, PSI-2, MCSG, struc
genomics, protein structure initiative, midwest center
for structural genomics; 1.66A {Archaeoglobus fulgidus}
SCOP: a.70.2.1
Length = 155
Score = 25.0 bits (53), Expect = 4.1
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 23 QDRDQPAWECVSLITLTLTDINDNAPEFASVINS--ASILEN 62
Q+R A++ VS I + +++S IL N
Sbjct: 8 QERASFAFKVVSDIKDKYSQNKKVQGKYSSYAEKAPTIILNN 49
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape,
transferase, peptidoglycan synthesis, associative
mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A*
2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Length = 456
Score = 24.4 bits (54), Expect = 6.5
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 9/40 (22%)
Query: 37 TLTLTDINDNAPEFASVINSASILENAEIGSLSTVNATIG 76
L I ++ I S+LE++ +G A IG
Sbjct: 297 VLKNVVIGNDV-----EIKPYSVLEDSIVGE----KAAIG 327
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics,
national institute allergy and infectious diseases; HET:
GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A
1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Length = 459
Score = 24.4 bits (54), Expect = 6.9
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 9/40 (22%)
Query: 37 TLTLTDINDNAPEFASVINSASILENAEIGSLSTVNATIG 76
L I D++ I+ ++LE+A + + N T+G
Sbjct: 300 VLKNCVIGDDS-----EISPYTVLEDARLDA----NCTVG 330
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 24.2 bits (53), Expect = 8.1
Identities = 6/19 (31%), Positives = 7/19 (36%), Gaps = 2/19 (10%)
Query: 75 IGVNRC--GHTFRGKDLRC 91
IG N C G + C
Sbjct: 346 IGCNVCISRWEIGGPPMIC 364
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.390
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,314,761
Number of extensions: 59403
Number of successful extensions: 223
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 75
Length of query: 96
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 34
Effective length of database: 4,970,691
Effective search space: 169003494
Effective search space used: 169003494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.2 bits)