RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10256
(96 letters)
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 35.7 bits (81), Expect = 1e-04
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 44 NDNAPEFASVINSASILENA---EIGSLSTVNATIGVNRCGHTFRGKDLRCYNLFK 96
NDNAP F +A + EN E+ LS + + + F
Sbjct: 2 NDNAPIFDPKTYTALVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFN 57
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 34.6 bits (78), Expect = 4e-04
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 44 NDNAPEFASVINSASILENAEIGSL 68
NDN P+F + S+ E + G+
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQ 26
Score = 29.3 bits (64), Expect = 0.041
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 2 LKTARGLDREKIARYTLNAHVQDRDQPAWECVSLITLTLTD 42
GLDREK YTL D + + +TD
Sbjct: 73 SLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITD 113
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 34.7 bits (78), Expect = 4e-04
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 44 NDNAPEFASVINSASILENAEIGSL 68
NDN PEF + S+ E A G+
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTS 25
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 34.7 bits (78), Expect = 4e-04
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 44 NDNAPEFASVINSASILENAEIGSL 68
NDN PEF + + S+ E ++ G+
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTY 25
Score = 22.8 bits (47), Expect = 8.4
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 10 REKIARYTLNAHVQDRDQPAWECVSLITLTLTDIND 45
REK+ +YTL D + +S + + D
Sbjct: 79 REKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 114
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 136
Score = 32.3 bits (72), Expect = 0.003
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 42 DINDNAPEFASVINSASILENAEIGSL 68
+I F + SA + ++ G
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEGQP 31
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 30.7 bits (68), Expect = 0.011
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 45 DNAPEFASVINSASILENAEIGSL 68
+ AP F ++ + E+ G
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEK 24
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 29.7 bits (65), Expect = 0.026
Identities = 5/50 (10%), Positives = 12/50 (24%), Gaps = 2/50 (4%)
Query: 44 NDNAPEFASVINSASILENAEIGSLSTVNATIGVNRCGHTFRGKDLRCYN 93
NDN P + ++ + + T++
Sbjct: 1 NDNGPVPSP--RVFTMCDQNPEPQVLTISDADIPPNTYPYKVSLSHGSDL 48
Score = 28.5 bits (62), Expect = 0.065
Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 2/40 (5%)
Query: 9 DREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAP 48
+ K Y++ + D V + T+ A
Sbjct: 67 QQLKKGDYSIYVLLSDAQNNPQLTV--VNATVCSCEGKAI 104
>d1flca1 b.19.1.3 (A:151-306) Hemagglutinin domain of
haemagglutinin-esterase-fusion glycoprotein HEF1
{Influenza C virus [TaxId: 11552]}
Length = 156
Score = 27.0 bits (59), Expect = 0.29
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 32 CVSLITLTLTDINDNAPEFASVINSASILENAEIGSLSTVNATIGVNRCG 81
C+SL+ I + + S L+N L T N+CG
Sbjct: 1 CMSLVNALDKTIPLQVTAGTAGNCNNSFLKNPA---LYTQEVKPSENKCG 47
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 104
Score = 25.8 bits (56), Expect = 0.51
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 48 PEFASVINSASILENAEIGSLSTVNAT 74
P + VI S EN + +
Sbjct: 1 PLGSWVIPPISCPENEKGPFPKNLVQI 27
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 159
Score = 25.2 bits (54), Expect = 1.3
Identities = 7/55 (12%), Positives = 14/55 (25%)
Query: 8 LDREKIARYTLNAHVQDRDQPAWECVSLITLTLTDINDNAPEFASVINSASILEN 62
+ K + V + E + + + P I +I N
Sbjct: 103 ITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHAN 157
>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 146
Score = 25.0 bits (54), Expect = 1.6
Identities = 6/61 (9%), Positives = 17/61 (27%)
Query: 29 AWECVSLITLTLTDINDNAPEFASVINSASILENAEIGSLSTVNATIGVNRCGHTFRGKD 88
T + + S+ A + + G++R G + + +
Sbjct: 51 VVSLPDFFTFDKQPLEYRLSVLPDNVPIMSVEVLATTCWGKYAHQSFGIDRFGASGKAPE 110
Query: 89 L 89
+
Sbjct: 111 V 111
>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella
enterica [TaxId: 28901]}
Length = 320
Score = 24.8 bits (53), Expect = 2.1
Identities = 11/43 (25%), Positives = 12/43 (27%), Gaps = 3/43 (6%)
Query: 49 EFASVINSASILENAEIGSLSTV--NATIGVNR-CGHTFRGKD 88
E A I NA I T+ N IG N
Sbjct: 62 ENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDG 104
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans
isomerase-like 2, Cyclophilin-60, PPI domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 22.8 bits (48), Expect = 9.7
Identities = 3/33 (9%), Positives = 16/33 (48%)
Query: 30 WECVSLITLTLTDINDNAPEFASVINSASILEN 62
++ ++ + +D + P+ I++ ++ +
Sbjct: 125 FDVLTAMENVESDPKTDRPKEEIRIDATTVFVD 157
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.390
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 314,977
Number of extensions: 10831
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 19
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.4 bits)