BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10257
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P6H|A Chain A, Crystal Structure Of Hypothetical Protein Ape1520 From
Aeropyrum Pernix K1
pdb|2P6H|B Chain B, Crystal Structure Of Hypothetical Protein Ape1520 From
Aeropyrum Pernix K1
Length = 134
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/81 (20%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 22 TYFVHTPHALMLQDVKAVITHSIHSTLNSVGGIQVLFPLFSQLDLPCDSADKKDPHLCSK 81
++ V T L + DV T + L++VGG+ L ++ + ++ +P L
Sbjct: 5 SFTVKTERRLQVLDV----TGKVEEWLSTVGGVNGLLVVYVPHTTAAVAVNEAEPRLMED 60
Query: 82 LLGFICELVESSQTVQQHIIQ 102
++ FI EL + + +++
Sbjct: 61 IVEFIRELTKPGGPWKHNLVD 81
>pdb|2Z6M|A Chain A, Crystal Structure Of Human Ferritin H8 As Biotemplate For
Noble Metal Nanoparticle Synthesis
pdb|2Z6M|B Chain B, Crystal Structure Of Human Ferritin H8 As Biotemplate For
Noble Metal Nanoparticle Synthesis
pdb|2Z6M|C Chain C, Crystal Structure Of Human Ferritin H8 As Biotemplate For
Noble Metal Nanoparticle Synthesis
pdb|2Z6M|D Chain D, Crystal Structure Of Human Ferritin H8 As Biotemplate For
Noble Metal Nanoparticle Synthesis
pdb|2Z6M|E Chain E, Crystal Structure Of Human Ferritin H8 As Biotemplate For
Noble Metal Nanoparticle Synthesis
pdb|2Z6M|F Chain F, Crystal Structure Of Human Ferritin H8 As Biotemplate For
Noble Metal Nanoparticle Synthesis
pdb|2Z6M|G Chain G, Crystal Structure Of Human Ferritin H8 As Biotemplate For
Noble Metal Nanoparticle Synthesis
pdb|2Z6M|H Chain H, Crystal Structure Of Human Ferritin H8 As Biotemplate For
Noble Metal Nanoparticle Synthesis
pdb|2Z6M|I Chain I, Crystal Structure Of Human Ferritin H8 As Biotemplate For
Noble Metal Nanoparticle Synthesis
pdb|2Z6M|J Chain J, Crystal Structure Of Human Ferritin H8 As Biotemplate For
Noble Metal Nanoparticle Synthesis
pdb|2Z6M|K Chain K, Crystal Structure Of Human Ferritin H8 As Biotemplate For
Noble Metal Nanoparticle Synthesis
pdb|2Z6M|L Chain L, Crystal Structure Of Human Ferritin H8 As Biotemplate For
Noble Metal Nanoparticle Synthesis
Length = 176
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 20/85 (23%)
Query: 16 APKGNPTYFVHTPHA------------------LMLQDVKAVITHSIHSTLNSVGGIQVL 57
A K YF+H H + LQD+K S LN++ L
Sbjct: 47 ALKNFAKYFLHQSHEERCHAEKLMKLQNQRGGRIFLQDIKKPDRDDWESGLNAMEAALQL 106
Query: 58 FPLFSQ--LDLPCDSADKKDPHLCS 80
+Q L+L + DK DPHLC
Sbjct: 107 EKNVNQSLLELHKLATDKNDPHLCD 131
>pdb|1RCC|A Chain A, Bullfrog Red Cell L Ferritin TartrateMGPH 5.5
pdb|1RCE|A Chain A, Bullfrog Red Cell L Ferritin SulfateMNPH 6.3
Length = 173
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 64 LDLPCDSADKKDPHLCSKLLG-FICELVESSQTVQQHI 100
LDL +ADK DPH+ L ++ E VE+ + + HI
Sbjct: 112 LDLHAVAADKSDPHMTDFLESPYLSESVETIKKLGDHI 149
>pdb|3ERZ|A Chain A, Directing Noble Metal Ion Chemistry Within A Designed
Ferritin Protein. Mercury Ions On The Three-Fold Channel
pdb|3ERZ|B Chain B, Directing Noble Metal Ion Chemistry Within A Designed
Ferritin Protein. Mercury Ions On The Three-Fold Channel
pdb|3ERZ|C Chain C, Directing Noble Metal Ion Chemistry Within A Designed
Ferritin Protein. Mercury Ions On The Three-Fold Channel
pdb|3ERZ|D Chain D, Directing Noble Metal Ion Chemistry Within A Designed
Ferritin Protein. Mercury Ions On The Three-Fold Channel
pdb|3ERZ|E Chain E, Directing Noble Metal Ion Chemistry Within A Designed
Ferritin Protein. Mercury Ions On The Three-Fold Channel
pdb|3ERZ|F Chain F, Directing Noble Metal Ion Chemistry Within A Designed
Ferritin Protein. Mercury Ions On The Three-Fold Channel
pdb|3ERZ|G Chain G, Directing Noble Metal Ion Chemistry Within A Designed
Ferritin Protein. Mercury Ions On The Three-Fold Channel
pdb|3ERZ|H Chain H, Directing Noble Metal Ion Chemistry Within A Designed
Ferritin Protein. Mercury Ions On The Three-Fold Channel
pdb|3ERZ|I Chain I, Directing Noble Metal Ion Chemistry Within A Designed
Ferritin Protein. Mercury Ions On The Three-Fold Channel
pdb|3ERZ|J Chain J, Directing Noble Metal Ion Chemistry Within A Designed
Ferritin Protein. Mercury Ions On The Three-Fold Channel
pdb|3ERZ|K Chain K, Directing Noble Metal Ion Chemistry Within A Designed
Ferritin Protein. Mercury Ions On The Three-Fold Channel
pdb|3ERZ|L Chain L, Directing Noble Metal Ion Chemistry Within A Designed
Ferritin Protein. Mercury Ions On The Three-Fold Channel
Length = 183
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 20/85 (23%)
Query: 16 APKGNPTYFVHTPHA------------------LMLQDVKAVITHSIHSTLNSVGGIQVL 57
A K YF+H H + LQD+K S LN++ L
Sbjct: 48 ALKNFAKYFLHQSHEERCHAEKLMKLQNQRGGRIFLQDIKKPDRDDWESGLNAMEAALQL 107
Query: 58 FPLFSQ--LDLPCDSADKKDPHLCS 80
+Q L+L + DK DPHLC
Sbjct: 108 EKNVNQSLLELHKLATDKNDPHLCD 132
>pdb|1RCI|A Chain A, Bullfrog Red Cell L Ferritin TartrateMGPH 5.5
Length = 173
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 64 LDLPCDSADKKDPHLCSKLLG-FICELVESSQTVQQHI 100
LDL +ADK DPH+ L ++ E VE+ + + HI
Sbjct: 112 LDLHAVAADKSDPHMTDFLESPYLSESVETIKKLGDHI 149
>pdb|1RCD|A Chain A, Bullfrog Red Cell L Ferritin TartrateMGPH 5.5
pdb|1RCG|A Chain A, Bullfrog Red Cell L Ferritin SulfateMNPH 6.3
Length = 173
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 64 LDLPCDSADKKDPHLCSKLLG-FICELVESSQTVQQHI 100
LDL +ADK DPH+ L ++ E VE+ + + HI
Sbjct: 112 LDLHAVAADKSDPHMTDFLESPYLSESVETIKKLGDHI 149
>pdb|1R03|A Chain A, Crystal Structure Of A Human Mitochondrial Ferritin
Length = 182
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 31 LMLQDVKAVITHSIHSTLNSVGGIQVLFPLFSQ--LDLPCDSADKKDPHLCSKLLG-FIC 87
+ LQD+K S L+++ +L +Q L+L ++DK DPHLC L ++
Sbjct: 80 IRLQDIKKPEQDDWESGLHAMECALLLEKNVNQSLLELHALASDKGDPHLCDFLETYYLN 139
Query: 88 ELVESSQTVQQHI 100
E V+S + + H+
Sbjct: 140 EQVKSIKELGDHV 152
>pdb|3KA6|A Chain A, Frog M-Ferritin, Eed Mutant, With Cobalt
Length = 176
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 15/109 (13%)
Query: 31 LMLQDVKAVITHSIHSTLNSVGGIQVLFPLFSQ--LDLPCDSADKKDPHLCSKLLGFICE 88
++LQD+K +TL ++ L +Q LDL + DK DPHLC L
Sbjct: 77 VVLQDIKKPERDEWGNTLEAMQAALQLEKTVNQALLDLHKLATDKVDPHLCDFL------ 130
Query: 89 LVESSQTVQQHIIQNRGFLAISYMLQKLSREHLTLEVLGSFLRFTKHLV 137
S+ +++ + + I + L R L +G +L F KH V
Sbjct: 131 ---ESEYLEEEV---KDIKRIGDFITNLKRLGLPENGMGEYL-FDKHSV 172
>pdb|4F3R|A Chain A, Structure Of Phosphopantetheine Adenylyltransferase
(Cbu_0288) From Coxiella Burnetii
pdb|4F3R|B Chain B, Structure Of Phosphopantetheine Adenylyltransferase
(Cbu_0288) From Coxiella Burnetii
pdb|4F3R|C Chain C, Structure Of Phosphopantetheine Adenylyltransferase
(Cbu_0288) From Coxiella Burnetii
Length = 162
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 54 IQVLFPLFSQLDLPCDSADKKDPHL 78
I+ PLF+++ + C +KDPHL
Sbjct: 25 IERALPLFNKIIVACAPTSRKDPHL 49
>pdb|1MFR|A Chain A, Crystal Structure Of M Ferritin
pdb|1MFR|B Chain B, Crystal Structure Of M Ferritin
pdb|1MFR|C Chain C, Crystal Structure Of M Ferritin
pdb|1MFR|D Chain D, Crystal Structure Of M Ferritin
pdb|1MFR|E Chain E, Crystal Structure Of M Ferritin
pdb|1MFR|F Chain F, Crystal Structure Of M Ferritin
pdb|1MFR|G Chain G, Crystal Structure Of M Ferritin
pdb|1MFR|H Chain H, Crystal Structure Of M Ferritin
pdb|1MFR|I Chain I, Crystal Structure Of M Ferritin
pdb|1MFR|J Chain J, Crystal Structure Of M Ferritin
pdb|1MFR|K Chain K, Crystal Structure Of M Ferritin
pdb|1MFR|L Chain L, Crystal Structure Of M Ferritin
pdb|1MFR|M Chain M, Crystal Structure Of M Ferritin
pdb|1MFR|N Chain N, Crystal Structure Of M Ferritin
pdb|1MFR|O Chain O, Crystal Structure Of M Ferritin
pdb|1MFR|P Chain P, Crystal Structure Of M Ferritin
pdb|1MFR|Q Chain Q, Crystal Structure Of M Ferritin
pdb|1MFR|R Chain R, Crystal Structure Of M Ferritin
pdb|1MFR|S Chain S, Crystal Structure Of M Ferritin
pdb|1MFR|T Chain T, Crystal Structure Of M Ferritin
pdb|1MFR|U Chain U, Crystal Structure Of M Ferritin
pdb|1MFR|V Chain V, Crystal Structure Of M Ferritin
pdb|1MFR|W Chain W, Crystal Structure Of M Ferritin
pdb|1MFR|X Chain X, Crystal Structure Of M Ferritin
pdb|3KA3|A Chain A, Frog M-Ferritin With Magnesium
pdb|3KA4|A Chain A, Frog M-Ferritin With Cobalt
pdb|3RBC|A Chain A, Bullfrog M Ferritin With Iron(Iii) Bound To The
Ferroxidase Site
pdb|3RBC|B Chain B, Bullfrog M Ferritin With Iron(Iii) Bound To The
Ferroxidase Site
pdb|3RBC|C Chain C, Bullfrog M Ferritin With Iron(Iii) Bound To The
Ferroxidase Site
pdb|3RBC|D Chain D, Bullfrog M Ferritin With Iron(Iii) Bound To The
Ferroxidase Site
pdb|3RBC|E Chain E, Bullfrog M Ferritin With Iron(Iii) Bound To The
Ferroxidase Site
pdb|3RBC|F Chain F, Bullfrog M Ferritin With Iron(Iii) Bound To The
Ferroxidase Site
pdb|3RBC|G Chain G, Bullfrog M Ferritin With Iron(Iii) Bound To The
Ferroxidase Site
pdb|3RBC|H Chain H, Bullfrog M Ferritin With Iron(Iii) Bound To The
Ferroxidase Site
pdb|3RBC|I Chain I, Bullfrog M Ferritin With Iron(Iii) Bound To The
Ferroxidase Site
pdb|3RBC|J Chain J, Bullfrog M Ferritin With Iron(Iii) Bound To The
Ferroxidase Site
pdb|3RBC|K Chain K, Bullfrog M Ferritin With Iron(Iii) Bound To The
Ferroxidase Site
pdb|3RBC|L Chain L, Bullfrog M Ferritin With Iron(Iii) Bound To The
Ferroxidase Site
pdb|3RBC|M Chain M, Bullfrog M Ferritin With Iron(Iii) Bound To The
Ferroxidase Site
pdb|3RBC|N Chain N, Bullfrog M Ferritin With Iron(Iii) Bound To The
Ferroxidase Site
pdb|3RBC|O Chain O, Bullfrog M Ferritin With Iron(Iii) Bound To The
Ferroxidase Site
pdb|3RBC|P Chain P, Bullfrog M Ferritin With Iron(Iii) Bound To The
Ferroxidase Site
pdb|3RBC|Q Chain Q, Bullfrog M Ferritin With Iron(Iii) Bound To The
Ferroxidase Site
pdb|3RBC|R Chain R, Bullfrog M Ferritin With Iron(Iii) Bound To The
Ferroxidase Site
pdb|3RBC|S Chain S, Bullfrog M Ferritin With Iron(Iii) Bound To The
Ferroxidase Site
pdb|3RBC|T Chain T, Bullfrog M Ferritin With Iron(Iii) Bound To The
Ferroxidase Site
pdb|3RBC|U Chain U, Bullfrog M Ferritin With Iron(Iii) Bound To The
Ferroxidase Site
pdb|3RBC|V Chain V, Bullfrog M Ferritin With Iron(Iii) Bound To The
Ferroxidase Site
pdb|3RBC|W Chain W, Bullfrog M Ferritin With Iron(Iii) Bound To The
Ferroxidase Site
pdb|3RBC|X Chain X, Bullfrog M Ferritin With Iron(Iii) Bound To The
Ferroxidase Site
pdb|3RE7|A Chain A, Copper (Ii) Loaded Bullfrog Ferritin M Chain
pdb|3RE7|B Chain B, Copper (Ii) Loaded Bullfrog Ferritin M Chain
pdb|3RE7|C Chain C, Copper (Ii) Loaded Bullfrog Ferritin M Chain
pdb|3RE7|D Chain D, Copper (Ii) Loaded Bullfrog Ferritin M Chain
pdb|3RE7|E Chain E, Copper (Ii) Loaded Bullfrog Ferritin M Chain
pdb|3RE7|F Chain F, Copper (Ii) Loaded Bullfrog Ferritin M Chain
pdb|3RE7|G Chain G, Copper (Ii) Loaded Bullfrog Ferritin M Chain
pdb|3RE7|H Chain H, Copper (Ii) Loaded Bullfrog Ferritin M Chain
pdb|3RE7|I Chain I, Copper (Ii) Loaded Bullfrog Ferritin M Chain
pdb|3RE7|J Chain J, Copper (Ii) Loaded Bullfrog Ferritin M Chain
pdb|3RE7|K Chain K, Copper (Ii) Loaded Bullfrog Ferritin M Chain
pdb|3RE7|L Chain L, Copper (Ii) Loaded Bullfrog Ferritin M Chain
pdb|3RE7|M Chain M, Copper (Ii) Loaded Bullfrog Ferritin M Chain
pdb|3RE7|N Chain N, Copper (Ii) Loaded Bullfrog Ferritin M Chain
pdb|3RE7|O Chain O, Copper (Ii) Loaded Bullfrog Ferritin M Chain
pdb|3RE7|P Chain P, Copper (Ii) Loaded Bullfrog Ferritin M Chain
pdb|3RE7|Q Chain Q, Copper (Ii) Loaded Bullfrog Ferritin M Chain
pdb|3RE7|R Chain R, Copper (Ii) Loaded Bullfrog Ferritin M Chain
pdb|3RE7|S Chain S, Copper (Ii) Loaded Bullfrog Ferritin M Chain
pdb|3RE7|T Chain T, Copper (Ii) Loaded Bullfrog Ferritin M Chain
pdb|3RE7|U Chain U, Copper (Ii) Loaded Bullfrog Ferritin M Chain
pdb|3RE7|V Chain V, Copper (Ii) Loaded Bullfrog Ferritin M Chain
pdb|3RE7|W Chain W, Copper (Ii) Loaded Bullfrog Ferritin M Chain
pdb|3RE7|X Chain X, Copper (Ii) Loaded Bullfrog Ferritin M Chain
pdb|3RGD|A Chain A, Iron Loaded Frog M Ferritin. Short Soaking Time
pdb|3RGD|B Chain B, Iron Loaded Frog M Ferritin. Short Soaking Time
pdb|3RGD|C Chain C, Iron Loaded Frog M Ferritin. Short Soaking Time
pdb|3RGD|D Chain D, Iron Loaded Frog M Ferritin. Short Soaking Time
pdb|3RGD|E Chain E, Iron Loaded Frog M Ferritin. Short Soaking Time
pdb|3RGD|F Chain F, Iron Loaded Frog M Ferritin. Short Soaking Time
pdb|3RGD|G Chain G, Iron Loaded Frog M Ferritin. Short Soaking Time
pdb|3RGD|H Chain H, Iron Loaded Frog M Ferritin. Short Soaking Time
pdb|3RGD|I Chain I, Iron Loaded Frog M Ferritin. Short Soaking Time
pdb|3RGD|J Chain J, Iron Loaded Frog M Ferritin. Short Soaking Time
pdb|3RGD|K Chain K, Iron Loaded Frog M Ferritin. Short Soaking Time
pdb|3RGD|L Chain L, Iron Loaded Frog M Ferritin. Short Soaking Time
pdb|3RGD|M Chain M, Iron Loaded Frog M Ferritin. Short Soaking Time
pdb|3RGD|N Chain N, Iron Loaded Frog M Ferritin. Short Soaking Time
pdb|3RGD|O Chain O, Iron Loaded Frog M Ferritin. Short Soaking Time
pdb|3RGD|P Chain P, Iron Loaded Frog M Ferritin. Short Soaking Time
pdb|3RGD|Q Chain Q, Iron Loaded Frog M Ferritin. Short Soaking Time
pdb|3RGD|R Chain R, Iron Loaded Frog M Ferritin. Short Soaking Time
pdb|3RGD|S Chain S, Iron Loaded Frog M Ferritin. Short Soaking Time
pdb|3RGD|T Chain T, Iron Loaded Frog M Ferritin. Short Soaking Time
pdb|3RGD|U Chain U, Iron Loaded Frog M Ferritin. Short Soaking Time
pdb|3RGD|V Chain V, Iron Loaded Frog M Ferritin. Short Soaking Time
pdb|3RGD|W Chain W, Iron Loaded Frog M Ferritin. Short Soaking Time
pdb|3RGD|X Chain X, Iron Loaded Frog M Ferritin. Short Soaking Time
pdb|4DAS|A Chain A, Crystal Structure Of Bullfrog M Ferritin
pdb|4DAS|B Chain B, Crystal Structure Of Bullfrog M Ferritin
pdb|4DAS|C Chain C, Crystal Structure Of Bullfrog M Ferritin
pdb|4DAS|D Chain D, Crystal Structure Of Bullfrog M Ferritin
pdb|4DAS|E Chain E, Crystal Structure Of Bullfrog M Ferritin
pdb|4DAS|F Chain F, Crystal Structure Of Bullfrog M Ferritin
pdb|4DAS|G Chain G, Crystal Structure Of Bullfrog M Ferritin
pdb|4DAS|H Chain H, Crystal Structure Of Bullfrog M Ferritin
pdb|4DAS|I Chain I, Crystal Structure Of Bullfrog M Ferritin
pdb|4DAS|J Chain J, Crystal Structure Of Bullfrog M Ferritin
pdb|4DAS|K Chain K, Crystal Structure Of Bullfrog M Ferritin
pdb|4DAS|L Chain L, Crystal Structure Of Bullfrog M Ferritin
pdb|4DAS|M Chain M, Crystal Structure Of Bullfrog M Ferritin
pdb|4DAS|N Chain N, Crystal Structure Of Bullfrog M Ferritin
pdb|4DAS|O Chain O, Crystal Structure Of Bullfrog M Ferritin
pdb|4DAS|P Chain P, Crystal Structure Of Bullfrog M Ferritin
pdb|4DAS|Q Chain Q, Crystal Structure Of Bullfrog M Ferritin
pdb|4DAS|R Chain R, Crystal Structure Of Bullfrog M Ferritin
pdb|4DAS|S Chain S, Crystal Structure Of Bullfrog M Ferritin
pdb|4DAS|T Chain T, Crystal Structure Of Bullfrog M Ferritin
pdb|4DAS|U Chain U, Crystal Structure Of Bullfrog M Ferritin
pdb|4DAS|V Chain V, Crystal Structure Of Bullfrog M Ferritin
pdb|4DAS|X Chain X, Crystal Structure Of Bullfrog M Ferritin
pdb|4DAS|W Chain W, Crystal Structure Of Bullfrog M Ferritin
Length = 176
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 15/109 (13%)
Query: 31 LMLQDVKAVITHSIHSTLNSVGGIQVLFPLFSQ--LDLPCDSADKKDPHLCSKLLGFICE 88
++LQD+K +TL ++ L +Q LDL + DK DPHLC L
Sbjct: 77 VVLQDIKKPERDEWGNTLEAMQAALQLEKTVNQALLDLHKLATDKVDPHLCDFL------ 130
Query: 89 LVESSQTVQQHIIQNRGFLAISYMLQKLSREHLTLEVLGSFLRFTKHLV 137
S+ +++ + + I + L R L +G +L F KH V
Sbjct: 131 ---ESEYLEEQV---KDIKRIGDFITNLKRLGLPENGMGEYL-FDKHSV 172
>pdb|3SE1|A Chain A, Frog M-Ferritin With Magnesium, R72d Mutant
Length = 176
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 15/109 (13%)
Query: 31 LMLQDVKAVITHSIHSTLNSVGGIQVLFPLFSQ--LDLPCDSADKKDPHLCSKLLGFICE 88
++LQD+K +TL ++ L +Q LDL + DK DPHLC L
Sbjct: 77 VVLQDIKKPERDEWGNTLEAMQAALQLEKTVNQALLDLHKLATDKVDPHLCDFL------ 130
Query: 89 LVESSQTVQQHIIQNRGFLAISYMLQKLSREHLTLEVLGSFLRFTKHLV 137
S+ +++ + + I + L R L +G +L F KH V
Sbjct: 131 ---ESEYLEEQV---KDIKRIGDFITNLKRLGLPENGMGEYL-FDKHSV 172
>pdb|3SHX|A Chain A, Frog M-Ferritin With Magnesium, L134p Mutant
Length = 176
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 31 LMLQDVKAVITHSIHSTLNSVGGIQVLFPLFSQ--LDLPCDSADKKDPHLCS 80
++LQD+K +TL ++ L +Q LDL + DK DPHLC
Sbjct: 77 VVLQDIKKPERDEWGNTLEAMQAALQLEKTVNQALLDLHKLATDKVDPHLCD 128
>pdb|3KA9|A Chain A, Frog M-Ferritin, Eeh Mutant, With Cobalt
Length = 176
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 31 LMLQDVKAVITHSIHSTLNSVGGIQVLFPLFSQ--LDLPCDSADKKDPHLCS 80
++LQD+K +TL ++ L +Q LDL + DK DPHLC
Sbjct: 77 VVLQDIKKPERDEWGNTLEAMQAALQLEKTVNQALLDLHKLATDKVDPHLCD 128
>pdb|3KA8|A Chain A, Frog M-Ferritin, Eqh Mutant, With Cobalt
Length = 176
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 31 LMLQDVKAVITHSIHSTLNSVGGIQVLFPLFSQ--LDLPCDSADKKDPHLCS 80
++LQD+K +TL ++ L +Q LDL + DK DPHLC
Sbjct: 77 VVLQDIKKPERDEWGNTLEAMQAALQLEKTVNQALLDLHKLATDKVDPHLCD 128
>pdb|1BG7|A Chain A, Localized Unfolding At The Junction Of Three Ferritin
Subunits. A Mechanism For Iron Release?
Length = 176
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 31 LMLQDVKAVITHSIHSTLNSVGGIQVLFPLFSQ--LDLPCDSADKKDPHLCS 80
++LQDV+ +TL ++ L +Q LDL +DK DPHLC
Sbjct: 77 IVLQDVQKPERDEWGNTLEAMQAALQLEKTVNQALLDLHKVGSDKVDPHLCD 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,474,263
Number of Sequences: 62578
Number of extensions: 154518
Number of successful extensions: 434
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 433
Number of HSP's gapped (non-prelim): 16
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)