BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10257
(166 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=rg PE=1 SV=3
Length = 3578
Score = 253 bits (645), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 123/153 (80%), Positives = 138/153 (90%), Gaps = 2/153 (1%)
Query: 1 MYNPVATDSQLCLQSAPKGNPTYFVHTPHALMLQDVKAVITHSIHSTLNSVGGIQVLFPL 60
MYNPVATD QLCLQS+PKGN +YFVHTPHALMLQDVKAV+THSIH TLNS+GGIQVLFPL
Sbjct: 411 MYNPVATDGQLCLQSSPKGNVSYFVHTPHALMLQDVKAVVTHSIHCTLNSIGGIQVLFPL 470
Query: 61 FSQLDLPCDS-AD-KKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLSR 118
FSQLD+ + D K+DP LCSKLLGFICELVE+SQTVQQH+IQNRGFL IS+MLQ+ SR
Sbjct: 471 FSQLDMAHEGLGDIKRDPTLCSKLLGFICELVETSQTVQQHMIQNRGFLVISFMLQRSSR 530
Query: 119 EHLTLEVLGSFLRFTKHLVTCLTPNSELLLKQV 151
EHLTLEVLGSFL TK+LVTCL+ NS+LLLKQ+
Sbjct: 531 EHLTLEVLGSFLNLTKYLVTCLSANSDLLLKQL 563
>sp|Q9ESE1|LRBA_MOUSE Lipopolysaccharide-responsive and beige-like anchor protein OS=Mus
musculus GN=Lrba PE=1 SV=1
Length = 2856
Score = 156 bits (395), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 80/151 (52%), Positives = 110/151 (72%), Gaps = 2/151 (1%)
Query: 1 MYNPVATDSQLCLQSAPKGNPTYFVHTPHALMLQDVKAVITHSIHSTLNSVGGIQVLFPL 60
MYNP ATD+QLCL+S+PK NP+ FVH+PHALMLQDVKAV+THSI S ++S+GG+QVLFPL
Sbjct: 420 MYNPRATDAQLCLESSPKDNPSIFVHSPHALMLQDVKAVLTHSIQSAMHSIGGVQVLFPL 479
Query: 61 FSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLSREH 120
F+QLD +D+ D +C+ LL FI EL+++S +Q+ ++ +GFL I Y L+K S+ H
Sbjct: 480 FAQLDYKQYLSDEVDLTICTTLLAFIMELLKNSIAMQEQMLACKGFLVIGYSLEKSSKSH 539
Query: 121 LTLEVLGSFLRFTKHLVTCLTPNSELLLKQV 151
++ VL L F+K+L N LLKQ+
Sbjct: 540 VSRAVLELCLAFSKYLSNL--QNGMPLLKQL 568
>sp|Q8NFP9|NBEA_HUMAN Neurobeachin OS=Homo sapiens GN=NBEA PE=1 SV=3
Length = 2946
Score = 155 bits (393), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 74/135 (54%), Positives = 102/135 (75%)
Query: 2 YNPVATDSQLCLQSAPKGNPTYFVHTPHALMLQDVKAVITHSIHSTLNSVGGIQVLFPLF 61
YN ATD+QLCL+S+PK N + FVH+PHALMLQDVKA++THSIHS ++S+GGIQVLFPLF
Sbjct: 447 YNAKATDAQLCLESSPKENASIFVHSPHALMLQDVKAIVTHSIHSAIHSIGGIQVLFPLF 506
Query: 62 SQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLSREHL 121
+QLD + + + +C+ LL F+ EL++SS +Q+ ++ +GFL I Y+L+K SR H+
Sbjct: 507 AQLDNRQLNDSQVETTVCATLLAFLVELLKSSVAMQEQMLGGKGFLVIGYLLEKSSRVHI 566
Query: 122 TLEVLGSFLRFTKHL 136
T VL FL F K+L
Sbjct: 567 TRAVLEQFLSFAKYL 581
>sp|Q9EPN1|NBEA_MOUSE Neurobeachin OS=Mus musculus GN=Nbea PE=1 SV=1
Length = 2936
Score = 155 bits (393), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 74/135 (54%), Positives = 102/135 (75%)
Query: 2 YNPVATDSQLCLQSAPKGNPTYFVHTPHALMLQDVKAVITHSIHSTLNSVGGIQVLFPLF 61
YN ATD+QLCL+S+PK N + FVH+PHALMLQDVKA++THSIHS ++S+GGIQVLFPLF
Sbjct: 437 YNAKATDAQLCLESSPKENASIFVHSPHALMLQDVKAIVTHSIHSAIHSIGGIQVLFPLF 496
Query: 62 SQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLSREHL 121
+QLD + + + +C+ LL F+ EL++SS +Q+ ++ +GFL I Y+L+K SR H+
Sbjct: 497 AQLDNRQLNDSQVETTVCATLLAFLVELLKSSVAMQEQMLGGKGFLVIGYLLEKSSRVHI 556
Query: 122 TLEVLGSFLRFTKHL 136
T VL FL F K+L
Sbjct: 557 TRAVLEQFLSFAKYL 571
>sp|P50851|LRBA_HUMAN Lipopolysaccharide-responsive and beige-like anchor protein OS=Homo
sapiens GN=LRBA PE=1 SV=4
Length = 2863
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/150 (53%), Positives = 109/150 (72%), Gaps = 2/150 (1%)
Query: 2 YNPVATDSQLCLQSAPKGNPTYFVHTPHALMLQDVKAVITHSIHSTLNSVGGIQVLFPLF 61
YNP ATD+QLCL+S+PK NP+ FVH+PHALMLQDVKAV+THSI S ++S+GG+QVLFPLF
Sbjct: 421 YNPRATDAQLCLESSPKDNPSIFVHSPHALMLQDVKAVLTHSIQSAMHSIGGVQVLFPLF 480
Query: 62 SQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLSREHL 121
+QLD +D+ D +CS LL FI EL+++S +Q+ ++ +GFL I Y L+K S+ H+
Sbjct: 481 AQLDYRQYLSDEIDLTICSTLLAFIMELLKNSIAMQEQMLACKGFLVIGYSLEKSSKSHV 540
Query: 122 TLEVLGSFLRFTKHLVTCLTPNSELLLKQV 151
+ VL L F+K+L N LLKQ+
Sbjct: 541 SRAVLELCLAFSKYLSNL--QNGMPLLKQL 568
>sp|Q19317|NBEA_CAEEL Putative neurobeachin homolog OS=Caenorhabditis elegans GN=sel-2
PE=2 SV=3
Length = 2507
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 90/149 (60%), Gaps = 3/149 (2%)
Query: 2 YNPVATDSQLCLQSAPK-GNPTYFVHTPHALMLQDVKAVITHSIHSTLNSVGGIQVLFPL 60
Y P QLCL + PK TYFV PHA+M + V+ + THSIH +L SVGGIQ+L PL
Sbjct: 518 YCPKNCHGQLCLYTPPKTAASTYFVQIPHAVMKEGVEVITTHSIHKSLQSVGGIQILLPL 577
Query: 61 FSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLSREH 120
F+Q+DLP + + D +C LL I L+ SSQ+ QQ + ++GFL IS LQK S H
Sbjct: 578 FAQIDLPSSNDNSIDGEVCQTLLSLIALLLSSSQSSQQQLFHSKGFLIISSCLQKASPSH 637
Query: 121 LTLEVLGSFLRFTKHLVTCLTPNSELLLK 149
L+++VL + K L+ C P LLK
Sbjct: 638 LSMKVLEQLIHIAKFLLRC--PAGGPLLK 664
>sp|A8XSV3|NBEA_CAEBR Putative neurobeachin homolog OS=Caenorhabditis briggsae GN=sel-2
PE=3 SV=1
Length = 2531
Score = 96.3 bits (238), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 89/149 (59%), Gaps = 3/149 (2%)
Query: 2 YNPVATDSQLCLQSAPK-GNPTYFVHTPHALMLQDVKAVITHSIHSTLNSVGGIQVLFPL 60
Y P QLCL + PK TYFV PHA+M + V+ + THSIH +L SVGGIQ+L PL
Sbjct: 525 YCPKNCHGQLCLFTPPKTAANTYFVQIPHAVMKEGVEVITTHSIHKSLQSVGGIQILLPL 584
Query: 61 FSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLSREH 120
F+Q+DLP + D +C LL I L+ SSQ+ QQ + ++GFL IS LQ+ S H
Sbjct: 585 FAQIDLPSSHDNTIDGDVCQTLLSLISLLLSSSQSSQQQLFHSKGFLIISSCLQEASPSH 644
Query: 121 LTLEVLGSFLRFTKHLVTCLTPNSELLLK 149
L+++VL + K L+ C P LLK
Sbjct: 645 LSMKVLEQIIHIAKFLLRC--PAGGPLLK 671
>sp|Q54U63|LVSC_DICDI BEACH domain-containing protein lvsC OS=Dictyostelium discoideum
GN=lvsC PE=4 SV=2
Length = 2491
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 38/167 (22%)
Query: 2 YNPVATDSQLCLQSAPK--GNPTYFVHTPHALMLQDVKAVITHSIHSTLNSVGGIQVLFP 59
YN A D LCL + P G+ Y L + ++ I + +GGI+VLFP
Sbjct: 446 YNCRALDGDLCLDNTPDIGGDKNY------DATLVSINPCVSRDIKDIIYCLGGIKVLFP 499
Query: 60 LFSQLDLPCDSADKK------------------------------DPHLCSKLLGFICEL 89
L Q++ P + + L +++L +
Sbjct: 500 LIQQINNPISPLSLELITNENNNNNNNNLSLSSQQQTLEQLQQSINIKLTNQVLALFKFM 559
Query: 90 VESSQTVQQHIIQNRGFLAISYMLQKLSREHLTLEVLGSFLRFTKHL 136
++ S+ Q+ +++ +GF + Y+LQ++S E+LT+ F+ + +
Sbjct: 560 LKESEANQEEMLRCQGFSVMGYLLQQISPEYLTIGCTNIFIDMSNQI 606
>sp|E7FAW3|NBEL2_DANRE Neurobeachin-like protein 2 OS=Danio rerio GN=nbeal2 PE=1 SV=1
Length = 2801
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 26/149 (17%)
Query: 2 YNPVATDSQLCLQSAPKGNPTYFVH-TPHALMLQDVKAVITHSIHSTLNSVGGIQVLFPL 60
Y P A SQ+CL +P N Y T H ++ DVK V L+SVGG+ L PL
Sbjct: 887 YTPKAFKSQICLDLSP--NHLYDGRLTGHRVVNWDVKDV--------LSSVGGMGALLPL 936
Query: 61 FSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLSREH 120
Q+ L D+++ +G E+S + + +RG + L K S
Sbjct: 937 LEQVCL----LDQRE------TVG-----QETSDLLGPELTSSRGPAGMLLPLGKSSEGR 981
Query: 121 LTLEVLGSFLRFTKHLVTCLTPNSELLLK 149
L + +FL K+++ N E LL+
Sbjct: 982 LEKNSVAAFLLMIKNMLRNHPANQESLLQ 1010
>sp|Q54RQ8|LVSE_DICDI BEACH domain-containing protein lvsE OS=Dictyostelium discoideum
GN=lvsE PE=4 SV=1
Length = 2192
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 2 YNPVATDSQLCLQSAPKGNPTYFVHTPHALMLQDVKAVITHSIHSTLNSVGGIQVLFPLF 61
Y+P ATD LC + + P A ++ V + + S L +GG+++++PLF
Sbjct: 494 YHPRATDKALCFEISSGELPN------AATIMDGVSILKSVSPLDQLVYIGGLKMIYPLF 547
Query: 62 SQLDLPCDSADKKDPHLCS 80
+QL P + + + P S
Sbjct: 548 AQLGQPINGVEIEMPQDIS 566
>sp|Q6ZQA0|NBEL2_MOUSE Neurobeachin-like protein 2 OS=Mus musculus GN=Nbeal2 PE=2 SV=2
Length = 2742
Score = 34.7 bits (78), Expect = 0.28, Method: Composition-based stats.
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 42/160 (26%)
Query: 2 YNPVATDSQLCLQSAPKGNPTYFVHTPHALMLQDVKAVITHSIHSTLNSVGGIQVLFPLF 61
Y+P A + +CL +P G+ T H + DVK V+ N VGG+ VL PL
Sbjct: 848 YSPQACKNNICLDLSP-GHGLDGRLTGHRVETWDVKDVV--------NCVGGMGVLLPLL 898
Query: 62 SQLDL--------PCDSADKKDPHLCS--KLLGFICELVESSQ----------------- 94
++ + PC++ D P L S G + L +SS+
Sbjct: 899 ERVAVQPQEAEAGPCETHDLVGPELTSGRNTQGLLLPLGKSSEDRMERNAVAAFLLMLRN 958
Query: 95 -----TV-QQHIIQNRGFLAISYMLQKLSREHLTLEVLGS 128
TV Q+ ++Q +G I +L+K+ + + VL S
Sbjct: 959 FLQNHTVNQESLVQCQGPAIIGALLRKVPSSAMDMNVLMS 998
>sp|P24279|MCM3_YEAST DNA replication licensing factor MCM3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MCM3 PE=1 SV=1
Length = 971
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 19/110 (17%)
Query: 29 HALMLQDVKAVITHSIHSTLNS-VGGIQVLFPLFSQLDLPCDSADKKDPH--------LC 79
H +M Q + IH+TLN+ I P+F Q D+ +DPH L
Sbjct: 487 HEVMEQQTVTIAKAGIHTTLNARCSVIAAANPVFGQYDV------NRDPHQNIALPDSLL 540
Query: 80 SK--LLGFICELVES--SQTVQQHIIQNRGFLAISYMLQKLSREHLTLEV 125
S+ LL + + + +++ +H+++ +L Y+ + RE L L +
Sbjct: 541 SRFDLLFVVTDDINEIRDRSISEHVLRTHRYLPPGYLEGEPVRERLNLSL 590
>sp|F1LMY4|RYR1_RAT Ryanodine receptor 1 OS=Rattus norvegicus GN=Ryr1 PE=2 SV=1
Length = 5035
Score = 31.2 bits (69), Expect = 3.2, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 87 CELVESSQTVQQHIIQNRGFLAISYMLQKLSREHLTLEVLGSF-------LRFTKHLVT- 138
C L+ES + + +IIQ +I +L K R H L+VL S +R + L+T
Sbjct: 567 CVLIESPEVL--NIIQENHIKSIISLLDKHGRNHKVLDVLCSLCVCNGVAVRSNQDLITE 624
Query: 139 CLTPNSELLLK 149
L P ELLL+
Sbjct: 625 NLLPGRELLLQ 635
>sp|P16960|RYR1_PIG Ryanodine receptor 1 OS=Sus scrofa GN=RYR1 PE=2 SV=2
Length = 5035
Score = 31.2 bits (69), Expect = 3.2, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 87 CELVESSQTVQQHIIQNRGFLAISYMLQKLSREHLTLEVLGSF-------LRFTKHLVT- 138
C L+ES + + +IIQ +I +L K R H L+VL S +R + L+T
Sbjct: 566 CVLIESPEVL--NIIQENHIKSIISLLDKHGRNHKVLDVLCSLCVCNGVAVRSNQDLITE 623
Query: 139 CLTPNSELLLK 149
L P ELLL+
Sbjct: 624 NLLPGRELLLQ 634
>sp|P11716|RYR1_RABIT Ryanodine receptor 1 OS=Oryctolagus cuniculus GN=RYR1 PE=1 SV=1
Length = 5037
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 87 CELVESSQTVQQHIIQNRGFLAISYMLQKLSREHLTLEVLGSF-------LRFTKHLVT- 138
C L+ES + + +IIQ +I +L K R H L+VL S +R + L+T
Sbjct: 566 CVLIESPEVL--NIIQENHIKSIISLLDKHGRNHKVLDVLCSLCVCNGVAVRSNQDLITE 623
Query: 139 CLTPNSELLLK 149
L P ELLL+
Sbjct: 624 NLLPGRELLLQ 634
>sp|E9PZQ0|RYR1_MOUSE Ryanodine receptor 1 OS=Mus musculus GN=Ryr1 PE=1 SV=1
Length = 5035
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 87 CELVESSQTVQQHIIQNRGFLAISYMLQKLSREHLTLEVLGSF-------LRFTKHLVT- 138
C L+ES + + +IIQ +I +L K R H L+VL S +R + L+T
Sbjct: 567 CVLIESPEVL--NIIQENHIKSIISLLDKHGRNHKVLDVLCSLCVCNGVAVRSNQDLITE 624
Query: 139 CLTPNSELLLK 149
L P ELLL+
Sbjct: 625 NLLPGRELLLQ 635
>sp|P21817|RYR1_HUMAN Ryanodine receptor 1 OS=Homo sapiens GN=RYR1 PE=1 SV=3
Length = 5038
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 87 CELVESSQTVQQHIIQNRGFLAISYMLQKLSREHLTLEVLGSF-------LRFTKHLVT- 138
C L+ES + + +IIQ +I +L K R H L+VL S +R + L+T
Sbjct: 565 CVLIESPEVL--NIIQENHIKSIISLLDKHGRNHKVLDVLCSLCVCNGVAVRSNQDLITE 622
Query: 139 CLTPNSELLLK 149
L P ELLL+
Sbjct: 623 NLLPGRELLLQ 633
>sp|Q2YDI9|FTMT_BOVIN Ferritin, mitochondrial OS=Bos taurus GN=FTMT PE=2 SV=1
Length = 242
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 33 LQDVKAVITHSIHSTLNSVGGIQVLFPLFSQ--LDLPCDSADKKDPHLCSKL-LGFICEL 89
LQD+K + S LN++ +L +Q L+L ++DK DPHLC L ++ E
Sbjct: 142 LQDIKKPDQNDWKSGLNAMECALLLEKNVNQSLLELHTLASDKGDPHLCDFLETHYLNEQ 201
Query: 90 VESSQTVQQHI 100
V+S + + H+
Sbjct: 202 VKSIKELGDHV 212
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,515,631
Number of Sequences: 539616
Number of extensions: 2027447
Number of successful extensions: 5844
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 5822
Number of HSP's gapped (non-prelim): 27
length of query: 166
length of database: 191,569,459
effective HSP length: 109
effective length of query: 57
effective length of database: 132,751,315
effective search space: 7566824955
effective search space used: 7566824955
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)