Query psy10257
Match_columns 166
No_of_seqs 85 out of 101
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 21:51:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08045 CDC14: Cell division 90.8 1.3 2.9E-05 38.2 7.8 67 43-118 124-190 (257)
2 KOG2160|consensus 88.8 1.7 3.6E-05 39.1 7.1 78 48-135 120-197 (342)
3 PF08454 RIH_assoc: RyR and IP 72.5 8.9 0.00019 28.8 4.8 40 76-115 67-107 (109)
4 PF09759 Atx10homo_assoc: Spin 66.0 31 0.00068 25.8 6.5 43 80-125 4-46 (102)
5 KOG2734|consensus 60.7 8.1 0.00018 36.4 3.0 54 48-101 357-410 (536)
6 cd00020 ARM Armadillo/beta-cat 53.8 53 0.0012 22.4 5.7 73 49-136 4-76 (120)
7 cd00020 ARM Armadillo/beta-cat 53.6 69 0.0015 21.8 8.5 77 44-135 41-117 (120)
8 PF10274 ParcG: Parkin co-regu 52.4 10 0.00022 31.3 2.0 64 39-103 57-121 (183)
9 PF01365 RYDR_ITPR: RIH domain 47.3 20 0.00043 28.8 3.0 74 41-115 32-113 (207)
10 PF09759 Atx10homo_assoc: Spin 46.7 73 0.0016 23.8 5.7 54 41-102 17-70 (102)
11 PF00514 Arm: Armadillo/beta-c 45.3 21 0.00046 21.2 2.2 22 93-114 1-22 (41)
12 PF13764 E3_UbLigase_R4: E3 ub 37.9 2.2E+02 0.0047 28.7 8.9 66 43-114 108-173 (802)
13 KOG2154|consensus 35.8 24 0.00051 33.4 1.8 33 76-108 369-401 (505)
14 smart00185 ARM Armadillo/beta- 34.7 58 0.0013 18.4 2.9 20 95-114 3-22 (41)
15 PF14483 Cut8_M: Cut8 dimerisa 34.2 70 0.0015 19.8 3.3 23 80-102 13-35 (38)
16 PF08052 PyrBI_leader: PyrBI o 29.5 17 0.00038 23.2 -0.1 26 38-63 3-28 (44)
17 KOG2160|consensus 27.9 1.8E+02 0.0039 26.3 6.0 63 44-115 158-220 (342)
18 PF04664 OGFr_N: Opioid growth 27.7 60 0.0013 27.3 2.9 14 51-64 46-59 (213)
19 PRK10224 pyrBI operon leader p 26.9 19 0.00041 23.0 -0.2 26 38-63 3-28 (44)
20 PF08167 RIX1: rRNA processing 26.8 2.1E+02 0.0046 22.3 5.7 59 78-136 87-145 (165)
21 PF07814 WAPL: Wings apart-lik 22.7 1.2E+02 0.0026 26.9 4.0 118 43-165 197-327 (361)
22 TIGR02835 spore_sigmaE RNA pol 22.3 4.3E+02 0.0093 21.4 7.1 77 47-139 20-97 (234)
23 cd08050 TAF6 TATA Binding Prot 22.1 2.4E+02 0.0053 24.9 5.7 104 47-152 198-311 (343)
No 1
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=90.82 E-value=1.3 Score=38.22 Aligned_cols=67 Identities=16% Similarity=0.237 Sum_probs=53.0
Q ss_pred chHHHHHhcCCccchhhhhhccCCCCCCCCCCChhhHHHHHHHHHHHHhhChHHHHHHHhcccHHHHHHHHhcCCc
Q psy10257 43 SIHSTLNSVGGIQVLFPLFSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLSR 118 (166)
Q Consensus 43 sikd~l~~IGGi~VLfPLf~Qld~~~~~~~~~dp~~~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iIg~LLqkvsp 118 (166)
.=+...+.-.++++|..|++ ...+|.+..+.|..+...+..+|.|+..|-+.+|+.+|.-++...+.
T Consensus 124 ~Sr~lF~r~~~m~lll~LL~---------~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~ 190 (257)
T PF08045_consen 124 PSRKLFHREQNMELLLDLLS---------PSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKST 190 (257)
T ss_pred hHHHHHhhhhhHHHHHHHhc---------cCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccccc
Confidence 34566677788888888882 22346677777877788899999999999999999999999987554
No 2
>KOG2160|consensus
Probab=88.82 E-value=1.7 Score=39.12 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=58.1
Q ss_pred HHhcCCccchhhhhhccCCCCCCCCCCChhhHHHHHHHHHHHHhhChHHHHHHHhcccHHHHHHHHhcCCcCCCCHHHHH
Q psy10257 48 LNSVGGIQVLFPLFSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLSREHLTLEVLG 127 (166)
Q Consensus 48 l~~IGGi~VLfPLf~Qld~~~~~~~~~dp~~~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iIg~LLqkvsp~~Lt~~vL~ 127 (166)
+.++||..++.= .+ +..++++=..-...|....++||..|+++++..|+..+--.|.+..|.|--..+|-
T Consensus 120 l~~~ggl~~ll~---~l-------~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~ 189 (342)
T KOG2160|consen 120 LISLGGLVPLLG---YL-------ENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALF 189 (342)
T ss_pred HhhccCHHHHHH---Hh-------cCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHH
Confidence 455666554433 33 23445554555566777899999999999999999999999998888888788888
Q ss_pred HHHHHHHH
Q psy10257 128 SFLRFTKH 135 (166)
Q Consensus 128 ~l~~L~~~ 135 (166)
++-.+++-
T Consensus 190 AissLIRn 197 (342)
T KOG2160|consen 190 AISSLIRN 197 (342)
T ss_pred HHHHHHhc
Confidence 88777653
No 3
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=72.51 E-value=8.9 Score=28.79 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHHHHHhh-ChHHHHHHHhcccHHHHHHHHhc
Q psy10257 76 PHLCSKLLGFICELVES-SQTVQQHIIQNRGFLAISYMLQK 115 (166)
Q Consensus 76 p~~~~~lL~ll~~lL~~-s~~nQeqm~~~~Gf~iIg~LLqk 115 (166)
.++....+..+.++.++ .+.||+.+.+++.+-.+..+|+|
T Consensus 67 ~~~~~q~~~tL~E~iQGPC~eNQ~~l~~s~~~~~i~~lL~~ 107 (109)
T PF08454_consen 67 IELIIQCFDTLTEFIQGPCIENQIALANSKFLDIINDLLSK 107 (109)
T ss_pred HHHHHHHHHHHHHHHcCCCHHhHHHHHHccHHHHHHHHHhh
Confidence 35677889999999999 99999999999999999999865
No 4
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=66.02 E-value=31 Score=25.76 Aligned_cols=43 Identities=19% Similarity=0.236 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhChHHHHHHHhcccHHHHHHHHhcCCcCCCCHHH
Q psy10257 80 SKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLSREHLTLEV 125 (166)
Q Consensus 80 ~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iIg~LLqkvsp~~Lt~~v 125 (166)
..++.+|.++.-.++.+|+++.+..| |..+|+.-....=++=.
T Consensus 4 ~~lvrlianl~~~~~~~Qd~vr~~~G---i~liL~~c~iD~~nP~i 46 (102)
T PF09759_consen 4 RDLVRLIANLCYKNKEVQDLVRELGG---IPLILSCCNIDDHNPFI 46 (102)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHcCC---hHHHHHhcCCCcccHHH
Confidence 46788999999999999999999999 56677765544444433
No 5
>KOG2734|consensus
Probab=60.75 E-value=8.1 Score=36.42 Aligned_cols=54 Identities=15% Similarity=0.303 Sum_probs=39.5
Q ss_pred HHhcCCccchhhhhhccCCCCCCCCCCChhhHHHHHHHHHHHHhhChHHHHHHH
Q psy10257 48 LNSVGGIQVLFPLFSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHII 101 (166)
Q Consensus 48 l~~IGGi~VLfPLf~Qld~~~~~~~~~dp~~~~~lL~ll~~lL~~s~~nQeqm~ 101 (166)
.-.++|.+.+||+|.|.-.+......+..+.-..+...|++++++.-+++++-+
T Consensus 357 fVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~~~~~r~R~ 410 (536)
T KOG2734|consen 357 FVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNLDGVHRQRL 410 (536)
T ss_pred HHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 456899999999999887765544555556667777788888887777666543
No 6
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=53.80 E-value=53 Score=22.41 Aligned_cols=73 Identities=21% Similarity=0.272 Sum_probs=50.4
Q ss_pred HhcCCccchhhhhhccCCCCCCCCCCChhhHHHHHHHHHHHHhhChHHHHHHHhcccHHHHHHHHhcCCcCCCCHHHHHH
Q psy10257 49 NSVGGIQVLFPLFSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLSREHLTLEVLGS 128 (166)
Q Consensus 49 ~~IGGi~VLfPLf~Qld~~~~~~~~~dp~~~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iIg~LLqkvsp~~Lt~~vL~~ 128 (166)
..-||++.|..++..- +++....-+..+.++...++.+.+.+++..++..+--+|+.- +.++...
T Consensus 4 ~~~~~i~~l~~~l~~~----------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-----~~~v~~~ 68 (120)
T cd00020 4 IQAGGLPALVSLLSSS----------DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-----DEEVVKA 68 (120)
T ss_pred HHcCChHHHHHHHHcC----------CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-----CHHHHHH
Confidence 4567777777776432 255666777778888888999999999999999988888752 3455444
Q ss_pred HHHHHHHH
Q psy10257 129 FLRFTKHL 136 (166)
Q Consensus 129 l~~L~~~l 136 (166)
.......+
T Consensus 69 a~~~L~~l 76 (120)
T cd00020 69 ALWALRNL 76 (120)
T ss_pred HHHHHHHH
Confidence 44443333
No 7
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=53.60 E-value=69 Score=21.83 Aligned_cols=77 Identities=12% Similarity=0.177 Sum_probs=52.9
Q ss_pred hHHHHHhcCCccchhhhhhccCCCCCCCCCCChhhHHHHHHHHHHHHhhChHHHHHHHhcccHHHHHHHHhcCCcCCCCH
Q psy10257 44 IHSTLNSVGGIQVLFPLFSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLSREHLTL 123 (166)
Q Consensus 44 ikd~l~~IGGi~VLfPLf~Qld~~~~~~~~~dp~~~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iIg~LLqkvsp~~Lt~ 123 (166)
....+...|+++.+.+++.. .++++...-+..+.++.+..+...+.+.+..+...+--+|+.- +.
T Consensus 41 ~~~~~~~~~~i~~l~~~l~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~-----~~ 105 (120)
T cd00020 41 NIQAVVEAGGLPALVQLLKS----------EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS-----NE 105 (120)
T ss_pred HHHHHHHCCChHHHHHHHhC----------CCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcC-----CH
Confidence 33444456999999888752 3678888889999999999988888888777666665555543 44
Q ss_pred HHHHHHHHHHHH
Q psy10257 124 EVLGSFLRFTKH 135 (166)
Q Consensus 124 ~vL~~l~~L~~~ 135 (166)
++.......+..
T Consensus 106 ~~~~~a~~~l~~ 117 (120)
T cd00020 106 DIQKNATGALSN 117 (120)
T ss_pred HHHHHHHHHHHH
Confidence 555444444433
No 8
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=52.38 E-value=10 Score=31.28 Aligned_cols=64 Identities=27% Similarity=0.470 Sum_probs=52.0
Q ss_pred EEeechHHHHHhcCCccchhhhhhccCCCCCCC-CCCChhhHHHHHHHHHHHHhhChHHHHHHHhc
Q psy10257 39 VITHSIHSTLNSVGGIQVLFPLFSQLDLPCDSA-DKKDPHLCSKLLGFICELVESSQTVQQHIIQN 103 (166)
Q Consensus 39 vvt~sikd~l~~IGGi~VLfPLf~Qld~~~~~~-~~~dp~~~~~lL~ll~~lL~~s~~nQeqm~~~ 103 (166)
+...-++|.+.. ||-.-++|++.|+=.|.... .+.||++....|..+..++..++..-+.+.-.
T Consensus 57 lA~~g~~dll~~-~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPy 121 (183)
T PF10274_consen 57 LARQGIKDLLER-GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPY 121 (183)
T ss_pred HHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 444568899988 88888999999999885433 46789998999999999999998888777654
No 9
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=47.27 E-value=20 Score=28.83 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=46.7
Q ss_pred eechHHHHHhcCCccchhhhhhccCCCCCCC-----CCCC---hhhHHHHHHHHHHHHhhChHHHHHHHhcccHHHHHHH
Q psy10257 41 THSIHSTLNSVGGIQVLFPLFSQLDLPCDSA-----DKKD---PHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYM 112 (166)
Q Consensus 41 t~sikd~l~~IGGi~VLfPLf~Qld~~~~~~-----~~~d---p~~~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iIg~L 112 (166)
.+.=++.+.-.|....++=++..--....+. +..+ ++++.....+++.+.++|+.||..+.+.-+|. ++++
T Consensus 32 ~~~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~~~~l-~~~~ 110 (207)
T PF01365_consen 32 NRERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKHLDFL-ISIF 110 (207)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH------H
T ss_pred chhhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHH-HHHH
Confidence 3455778888888887777766543332000 1111 35677888899999999999999999998866 5666
Q ss_pred Hhc
Q psy10257 113 LQK 115 (166)
Q Consensus 113 Lqk 115 (166)
.+.
T Consensus 111 ~~~ 113 (207)
T PF01365_consen 111 MQL 113 (207)
T ss_dssp HCC
T ss_pred HHh
Confidence 654
No 10
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=46.74 E-value=73 Score=23.79 Aligned_cols=54 Identities=22% Similarity=0.362 Sum_probs=39.2
Q ss_pred eechHHHHHhcCCccchhhhhhccCCCCCCCCCCChhhHHHHHHHHHHHHhhChHHHHHHHh
Q psy10257 41 THSIHSTLNSVGGIQVLFPLFSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQ 102 (166)
Q Consensus 41 t~sikd~l~~IGGi~VLfPLf~Qld~~~~~~~~~dp~~~~~lL~ll~~lL~~s~~nQeqm~~ 102 (166)
+..++|.+.-.||+.. ++++-. -|..+|.+-.--+--|++++++|+.||+-+-.
T Consensus 17 ~~~~Qd~vr~~~Gi~l---iL~~c~-----iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 17 NKEVQDLVRELGGIPL---ILSCCN-----IDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred CHHHHHHHHHcCChHH---HHHhcC-----CCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 3468999999999443 334321 13457877777777899999999999997654
No 11
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=45.33 E-value=21 Score=21.20 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.4
Q ss_pred ChHHHHHHHhcccHHHHHHHHh
Q psy10257 93 SQTVQQHIIQNRGFLAISYMLQ 114 (166)
Q Consensus 93 s~~nQeqm~~~~Gf~iIg~LLq 114 (166)
|+.+.+.+++..|+..+--||.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~ 22 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLK 22 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTT
T ss_pred CHHHHHHHHHcccHHHHHHHHc
Confidence 5788999999999999888888
No 12
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=37.93 E-value=2.2e+02 Score=28.66 Aligned_cols=66 Identities=17% Similarity=0.260 Sum_probs=46.9
Q ss_pred chHHHHHhcCCccchhhhhhccCCCCCCCCCCChhhHHHHHHHHHHHHhhChHHHHHHHhcccHHHHHHHHh
Q psy10257 43 SIHSTLNSVGGIQVLFPLFSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQ 114 (166)
Q Consensus 43 sikd~l~~IGGi~VLfPLf~Qld~~~~~~~~~dp~~~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iIg~LLq 114 (166)
.+-.++---||+++++++++-+.... .+-+.+..++.++....+ -+.|++++++.++..++=-.|.
T Consensus 108 ~~~~v~~~~gGL~~ll~~l~~~~~~~-----~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~ 173 (802)
T PF13764_consen 108 KIASVLAECGGLEVLLSRLDSIRDFS-----RGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLN 173 (802)
T ss_pred HHHHHhhcCCCHHHHHHHHHhhcccc-----CcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHH
Confidence 34556766899999999999887322 234566777777775544 4999999999888766544443
No 13
>KOG2154|consensus
Probab=35.79 E-value=24 Score=33.36 Aligned_cols=33 Identities=18% Similarity=0.393 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHHHhhChHHHHHHHhcccHHH
Q psy10257 76 PHLCSKLLGFICELVESSQTVQQHIIQNRGFLA 108 (166)
Q Consensus 76 p~~~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~i 108 (166)
|+-...++.+|+++|++||..|+-.++.++...
T Consensus 369 peA~~~vipfI~Nll~rHp~c~~lvhr~~~~~~ 401 (505)
T KOG2154|consen 369 PEAIVIVIPFICNLLRRHPNCQPLVHRSHALSL 401 (505)
T ss_pred cccchhhHHHHHHHHHhCCchhhhhcccccccC
Confidence 445668899999999999999999999988765
No 14
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=34.66 E-value=58 Score=18.40 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=16.0
Q ss_pred HHHHHHHhcccHHHHHHHHh
Q psy10257 95 TVQQHIIQNRGFLAISYMLQ 114 (166)
Q Consensus 95 ~nQeqm~~~~Gf~iIg~LLq 114 (166)
.+.+.+.+..|+..+--||+
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~ 22 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLK 22 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHc
Confidence 46777888888888888887
No 15
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=34.24 E-value=70 Score=19.77 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhChHHHHHHHh
Q psy10257 80 SKLLGFICELVESSQTVQQHIIQ 102 (166)
Q Consensus 80 ~~lL~ll~~lL~~s~~nQeqm~~ 102 (166)
..+..++.++.+.||..++.+..
T Consensus 13 ~qL~~lL~~l~~~HPei~~~i~~ 35 (38)
T PF14483_consen 13 DQLQSLLQSLCERHPEIQQEIRS 35 (38)
T ss_dssp HHHHHHHHHHHHHSTHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhHHHHHHh
Confidence 57889999999999999998865
No 16
>PF08052 PyrBI_leader: PyrBI operon leader peptide; InterPro: IPR012602 This family consists of the pyrBI operon leader peptides. The expression of the pyrBI operon, which encodes the subunits of the pyrimidine biosynthetic enzyme aspartate transcarbamylase. is regulated primarily through a UTP-sensitive transcriptional attenuation control mechanism. In this mechanism, the concentration of UTP determines the extent of coupling between transcription and translation within the pyrBI leader region, hence determining the level of rho-independent transcriptional termination at an attenuator preceding the pyrB gene [].; GO: 0019856 pyrimidine base biosynthetic process
Probab=29.50 E-value=17 Score=23.21 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=22.7
Q ss_pred EEEeechHHHHHhcCCccchhhhhhc
Q psy10257 38 AVITHSIHSTLNSVGGIQVLFPLFSQ 63 (166)
Q Consensus 38 ~vvt~sikd~l~~IGGi~VLfPLf~Q 63 (166)
.||+|++---+..=.|.-.+|||+.+
T Consensus 3 ~cvrh~vlprlk~daglpfffpl~~~ 28 (44)
T PF08052_consen 3 QCVRHSVLPRLKKDAGLPFFFPLITF 28 (44)
T ss_pred hhhhhhhhhhhhccCCCceEEecccc
Confidence 37888888889999999999999874
No 17
>KOG2160|consensus
Probab=27.86 E-value=1.8e+02 Score=26.33 Aligned_cols=63 Identities=21% Similarity=0.329 Sum_probs=45.8
Q ss_pred hHHHHHhcCCccchhhhhhccCCCCCCCCCCChhhHHHHHHHHHHHHhhChHHHHHHHhcccHHHHHHHHhc
Q psy10257 44 IHSTLNSVGGIQVLFPLFSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQK 115 (166)
Q Consensus 44 ikd~l~~IGGi~VLfPLf~Qld~~~~~~~~~dp~~~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iIg~LLqk 115 (166)
++..+.--||.+-|+=.|+ -+.|. +.-...|.-+.+++|+++.-|.+++.-+|+.++--.||.
T Consensus 158 ~Qe~v~E~~~L~~Ll~~ls-~~~~~--------~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~ 220 (342)
T KOG2160|consen 158 SQEQVIELGALSKLLKILS-SDDPN--------TVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQS 220 (342)
T ss_pred HHHHHHHcccHHHHHHHHc-cCCCc--------hHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHc
Confidence 3445555566666555554 22111 233677888899999999999999999999999888887
No 18
>PF04664 OGFr_N: Opioid growth factor receptor (OGFr) conserved region; InterPro: IPR006757 Opioid peptides act as growth factors in neural and non-neural cells and tissues, in addition to serving in neurotransmission/neuromodulation in the nervous system. The opioid growth factor receptor is an integral membrane protein associated with the nucleus. This conserved domain is situated at the N terminus of the member proteins with a series of imperfect repeats lying immediately to its C-terminal [].; GO: 0004872 receptor activity, 0016020 membrane
Probab=27.70 E-value=60 Score=27.26 Aligned_cols=14 Identities=43% Similarity=0.370 Sum_probs=11.8
Q ss_pred cCCccchhhhhhcc
Q psy10257 51 VGGIQVLFPLFSQL 64 (166)
Q Consensus 51 IGGi~VLfPLf~Ql 64 (166)
=+=||.|||+.++=
T Consensus 46 H~YIQWLFPl~e~s 59 (213)
T PF04664_consen 46 HDYIQWLFPLREPS 59 (213)
T ss_pred ccceeeecCCCCCC
Confidence 35599999999987
No 19
>PRK10224 pyrBI operon leader peptide; Provisional
Probab=26.93 E-value=19 Score=22.97 Aligned_cols=26 Identities=23% Similarity=0.557 Sum_probs=22.9
Q ss_pred EEEeechHHHHHhcCCccchhhhhhc
Q psy10257 38 AVITHSIHSTLNSVGGIQVLFPLFSQ 63 (166)
Q Consensus 38 ~vvt~sikd~l~~IGGi~VLfPLf~Q 63 (166)
.||+|++---++.=.|+-.+|||..-
T Consensus 3 ~cvrh~vlprlk~daglpfffpl~~~ 28 (44)
T PRK10224 3 QCVRHFVLPRLKKDAGLPFFFPLITH 28 (44)
T ss_pred chhhhhhhhhhcccCCCceEEeeecc
Confidence 37889999999999999999999864
No 20
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=26.78 E-value=2.1e+02 Score=22.32 Aligned_cols=59 Identities=17% Similarity=0.126 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHhhChHHHHHHHhcccHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHH
Q psy10257 78 LCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLSREHLTLEVLGSFLRFTKHL 136 (166)
Q Consensus 78 ~~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iIg~LLqkvsp~~Lt~~vL~~l~~L~~~l 136 (166)
.+-..+.-+....++-|+...++.-.+-..++..+++...+...-..+++++..+++.-
T Consensus 87 ~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 87 AAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPHH 145 (165)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHC
Confidence 44566666777899999999999999999999999999888666777777777777753
No 21
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=22.70 E-value=1.2e+02 Score=26.87 Aligned_cols=118 Identities=17% Similarity=0.226 Sum_probs=64.6
Q ss_pred chHHHHHhcCCccchhhhhhc----cCCCCCCCCCCChh--hHHHHHHHHHHHHhhChHHHHHHHhccc---HHHHHHHH
Q psy10257 43 SIHSTLNSVGGIQVLFPLFSQ----LDLPCDSADKKDPH--LCSKLLGFICELVESSQTVQQHIIQNRG---FLAISYML 113 (166)
Q Consensus 43 sikd~l~~IGGi~VLfPLf~Q----ld~~~~~~~~~dp~--~~~~lL~ll~~lL~~s~~nQeqm~~~~G---f~iIg~LL 113 (166)
.+|+-+...||+.-++.+..+ .+......+....+ ....-|..+-+.--.|..||......++ ....+.++
T Consensus 197 ~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~ 276 (361)
T PF07814_consen 197 WFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLL 276 (361)
T ss_pred cchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHH
Confidence 468999999999999999985 33322221111111 2222333344444466788888887766 33334444
Q ss_pred hcCCcCCCCHHHHHHHHHHHHHHhhcCCCCc----HHHHHHHHHHhhHHhhccccc
Q psy10257 114 QKLSREHLTLEVLGSFLRFTKHLVTCLTPNS----ELLLKQVSISCVIILDSFICL 165 (166)
Q Consensus 114 qkvsp~~Lt~~vL~~l~~L~~~l~~~~~~~~----~~LL~ql~~~~~~~~~~~~~~ 165 (166)
++ ....+...+...++.+.|...+|+ +.==..+.++-..|..+|.|+
T Consensus 277 ~~-----~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~ 327 (361)
T PF07814_consen 277 RQ-----CDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCV 327 (361)
T ss_pred HH-----HHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccc
Confidence 44 333444446777777766555441 122233444445555555553
No 22
>TIGR02835 spore_sigmaE RNA polymerase sigma-E factor. Members of this family comprise the Firmicutes lineage endospore formation-specific sigma factor SigE, also called SpoIIGB and sigma-29. As characterized in Bacillus subtilis, this protein is synthesized as a precursor, specifically in the mother cell compartment, and must cleaved by the SpoIIGA protein to be made active.
Probab=22.29 E-value=4.3e+02 Score=21.43 Aligned_cols=77 Identities=12% Similarity=0.133 Sum_probs=52.7
Q ss_pred HHHhcCCccchhhhhhccCCCCCCCCCCChhhHHHHHHHHHHHHhhChHHHHHHHhcccHHHHHHHHhcCCcCCCCHHHH
Q psy10257 47 TLNSVGGIQVLFPLFSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLSREHLTLEVL 126 (166)
Q Consensus 47 ~l~~IGGi~VLfPLf~Qld~~~~~~~~~dp~~~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iIg~LLqkvsp~~Lt~~vL 126 (166)
-|+.|||-..+||=++- ..--.++..+-.++..-.++++....-.+.++.........-..+++
T Consensus 20 ~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~d~~a~~~l~~~y~~~l~~~~~~~~~~~~~AEDlv 83 (234)
T TIGR02835 20 EIYYIGGSEALPPPLTG----------------EEEEALLQKLTQGDESAKSTLIERNLRLVVYIARKFENTGIGIEDLV 83 (234)
T ss_pred HHHHhcccccCCCcCCH----------------HHHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHHHHhccCCCCHHHHH
Confidence 47889999888775530 11122344455677888888888888888888888877666666665
Q ss_pred -HHHHHHHHHHhhc
Q psy10257 127 -GSFLRFTKHLVTC 139 (166)
Q Consensus 127 -~~l~~L~~~l~~~ 139 (166)
+.+..+.+.+.+-
T Consensus 84 QE~fl~l~~~~~~f 97 (234)
T TIGR02835 84 SIGTIGLIKAVNTF 97 (234)
T ss_pred HHHHHHHHHHHHHh
Confidence 6777777776543
No 23
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=22.06 E-value=2.4e+02 Score=24.89 Aligned_cols=104 Identities=14% Similarity=0.187 Sum_probs=68.8
Q ss_pred HHHhc---CCccchhhhhhccCCCCCCCCCC-ChhhHHHHHHHHHHHHhhChHHHHHHHhcccHHHHHHHHhcC-C----
Q psy10257 47 TLNSV---GGIQVLFPLFSQLDLPCDSADKK-DPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKL-S---- 117 (166)
Q Consensus 47 ~l~~I---GGi~VLfPLf~Qld~~~~~~~~~-dp~~~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iIg~LLqkv-s---- 117 (166)
++.++ .|++.|+|=|.|+=...-..... +-+....++.++..++.+....-+.-+|.--..++..++.|- .
T Consensus 198 aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~ 277 (343)
T cd08050 198 ALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPP 277 (343)
T ss_pred HHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCC
Confidence 44444 89999999999984332111112 566788999999999999999999999998888998998882 2
Q ss_pred -cCCCCHHHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q psy10257 118 -REHLTLEVLGSFLRFTKHLVTCLTPNSELLLKQVS 152 (166)
Q Consensus 118 -p~~Lt~~vL~~l~~L~~~l~~~~~~~~~~LL~ql~ 152 (166)
..||..+...+ .-|...+.+.+..++. |...+.
T Consensus 278 ~~~h~~LRd~AA-~ll~~i~~~f~~~y~~-l~~ri~ 311 (343)
T cd08050 278 DDNHWALRDYAA-RLLAQICRKFSTSYNT-LQPRIT 311 (343)
T ss_pred CchHHHHHHHHH-HHHHHHHHHcCCCCCc-HHHHHH
Confidence 36676666533 2233333334544444 444333
Done!