Query psy10257
Match_columns 166
No_of_seqs 85 out of 101
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 21:51:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10257.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10257hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xqr_A HSPBP1 protein; armadil 89.1 1.2 4E-05 37.0 7.4 65 43-117 72-137 (296)
2 1xqr_A HSPBP1 protein; armadil 70.8 8.2 0.00028 31.8 6.0 64 43-115 115-178 (296)
3 3grl_A General vesicular trans 58.8 17 0.00057 34.1 6.2 60 77-136 227-290 (651)
4 1xm9_A Plakophilin 1; armadill 57.2 22 0.00077 30.3 6.4 65 43-117 35-99 (457)
5 4hxt_A De novo protein OR329; 51.6 68 0.0023 23.4 9.0 79 43-136 119-197 (252)
6 4db8_A Armadillo-repeat protei 51.0 21 0.00072 26.7 4.7 75 47-136 49-123 (252)
7 3tt9_A Plakophilin-2; cell adh 46.4 42 0.0014 26.8 6.0 65 43-117 43-107 (233)
8 4hxt_A De novo protein OR329; 42.4 96 0.0033 22.6 9.4 79 43-136 77-155 (252)
9 4db6_A Armadillo repeat protei 35.7 1.2E+02 0.0041 21.7 9.7 63 44-116 46-108 (210)
10 4db8_A Armadillo-repeat protei 35.4 1.3E+02 0.0045 22.1 9.3 76 46-136 132-207 (252)
11 4db6_A Armadillo repeat protei 35.2 1.2E+02 0.0042 21.7 9.9 79 43-136 87-165 (210)
12 3ul1_B Importin subunit alpha- 33.4 1.8E+02 0.0061 24.8 8.3 75 44-128 135-209 (510)
13 2jdq_A Importin alpha-1 subuni 29.3 1E+02 0.0035 24.8 5.8 55 51-115 106-160 (450)
14 3tpo_A Importin subunit alpha- 28.6 2E+02 0.0068 24.6 7.8 73 46-128 156-228 (529)
15 1jdh_A Beta-catenin; beta-cate 27.1 1.2E+02 0.004 25.1 5.9 65 44-118 135-199 (529)
16 4b8j_A Importin subunit alpha- 25.5 2.3E+02 0.008 23.6 7.6 59 48-116 282-340 (528)
17 3nmz_A APC variant protein; pr 25.5 1.7E+02 0.0057 25.5 6.8 67 43-118 277-344 (458)
18 3ul1_B Importin subunit alpha- 22.9 1.2E+02 0.0041 25.9 5.3 78 44-132 93-170 (510)
19 4b8j_A Importin subunit alpha- 21.9 1.2E+02 0.0042 25.4 5.1 77 46-136 154-230 (528)
No 1
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=89.10 E-value=1.2 Score=36.97 Aligned_cols=65 Identities=9% Similarity=0.177 Sum_probs=50.3
Q ss_pred chHHHHHhcCCccchhh-hhhccCCCCCCCCCCChhhHHHHHHHHHHHHhhChHHHHHHHhcccHHHHHHHHhcCC
Q psy10257 43 SIHSTLNSVGGIQVLFP-LFSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLS 117 (166)
Q Consensus 43 sikd~l~~IGGi~VLfP-Lf~Qld~~~~~~~~~dp~~~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iIg~LLqkvs 117 (166)
+-...+..+||+..|.+ |+ . ..++++...-...+.++.++++.+|+.++...|+..+-.+|+.-+
T Consensus 72 dna~~~~~~G~l~~Lv~~lL---~-------s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~ 137 (296)
T 1xqr_A 72 DNAADFCQLSGMHLLVGRYL---E-------AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDA 137 (296)
T ss_dssp HHHHHHHHTTHHHHHHHTTT---T-------CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCS
T ss_pred hhHHHHHHcCCHHHHHHHHH---c-------CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCC
Confidence 44556777899876555 44 2 235677777788888899999999999999999999988998643
No 2
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=70.84 E-value=8.2 Score=31.79 Aligned_cols=64 Identities=19% Similarity=0.257 Sum_probs=51.7
Q ss_pred chHHHHHhcCCccchhhhhhccCCCCCCCCCCChhhHHHHHHHHHHHHhhChHHHHHHHhcccHHHHHHHHhc
Q psy10257 43 SIHSTLNSVGGIQVLFPLFSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQK 115 (166)
Q Consensus 43 sikd~l~~IGGi~VLfPLf~Qld~~~~~~~~~dp~~~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iIg~LLqk 115 (166)
..++.+-.-||+..|..|+.. ..++++-...+..|.++.++++..++.+....|+..+-.+|+.
T Consensus 115 ~~~~~vv~~g~l~~Ll~LL~~---------~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~ 178 (296)
T 1xqr_A 115 AIQEQVLGLGALRKLLRLLDR---------DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ 178 (296)
T ss_dssp HHHHHHHHTTHHHHHHHHHHH---------CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHcc---------CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC
Confidence 356677777888888888752 1246777788888999999999999999999999999999975
No 3
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=58.82 E-value=17 Score=34.11 Aligned_cols=60 Identities=8% Similarity=0.114 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHHhhChHHHHHHHhcccHHHHHHHHhc-CCcCCCCHHHHHH---HHHHHHHH
Q psy10257 77 HLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQK-LSREHLTLEVLGS---FLRFTKHL 136 (166)
Q Consensus 77 ~~~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iIg~LLqk-vsp~~Lt~~vL~~---l~~L~~~l 136 (166)
.++.--+.++.++|+.|+.||.-|.+..++.-+.-||+- -....|+.+.+.. ...+++.+
T Consensus 227 ivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlL 290 (651)
T 3grl_A 227 IVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVL 290 (651)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHH
Confidence 456777889999999999999999999999999888862 2234678777766 55555555
No 4
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=57.22 E-value=22 Score=30.26 Aligned_cols=65 Identities=20% Similarity=0.257 Sum_probs=50.3
Q ss_pred chHHHHHhcCCccchhhhhhccCCCCCCCCCCChhhHHHHHHHHHHHHhhChHHHHHHHhcccHHHHHHHHhcCC
Q psy10257 43 SIHSTLNSVGGIQVLFPLFSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLS 117 (166)
Q Consensus 43 sikd~l~~IGGi~VLfPLf~Qld~~~~~~~~~dp~~~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iIg~LLqkvs 117 (166)
..+..+-.-||+..|..++.- .++++...-...+.++..+++.|++.+.+..|...+--+|++.+
T Consensus 35 ~~~~~i~~~g~i~~Lv~lL~s----------~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~ 99 (457)
T 1xm9_A 35 SAKQQVYQLGGICKLVDLLRS----------PNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTG 99 (457)
T ss_dssp SHHHHHHHTTHHHHHHHHTTS----------SCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCHHHHHHHHcC----------CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCC
Confidence 456677788998877777641 24556566677778888888999999999999999999998654
No 5
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=51.55 E-value=68 Score=23.42 Aligned_cols=79 Identities=15% Similarity=0.256 Sum_probs=55.5
Q ss_pred chHHHHHhcCCccchhhhhhccCCCCCCCCCCChhhHHHHHHHHHHHHhhChHHHHHHHhcccHHHHHHHHhcCCcCCCC
Q psy10257 43 SIHSTLNSVGGIQVLFPLFSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLSREHLT 122 (166)
Q Consensus 43 sikd~l~~IGGi~VLfPLf~Qld~~~~~~~~~dp~~~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iIg~LLqkvsp~~Lt 122 (166)
..++.+..-||+..|..++.. .++++....+..+.++..+++.+.+.+.+..++..+-.+|+.-+
T Consensus 119 ~~~~~~~~~~~i~~L~~~l~~----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~----- 183 (252)
T 4hxt_A 119 EAIKAIVDAGGVEVLVKLLTS----------TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD----- 183 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTC----------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-----
T ss_pred HHHHHHHHCCCHHHHHHHHcC----------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCC-----
Confidence 344555556777777777652 34778888888999999999999999999988888888887433
Q ss_pred HHHHHHHHHHHHHH
Q psy10257 123 LEVLGSFLRFTKHL 136 (166)
Q Consensus 123 ~~vL~~l~~L~~~l 136 (166)
.++.......+..+
T Consensus 184 ~~v~~~a~~~L~~l 197 (252)
T 4hxt_A 184 SEVQKEAARALANI 197 (252)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35544444444444
No 6
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=50.98 E-value=21 Score=26.69 Aligned_cols=75 Identities=15% Similarity=0.229 Sum_probs=53.4
Q ss_pred HHHhcCCccchhhhhhccCCCCCCCCCCChhhHHHHHHHHHHHHhhChHHHHHHHhcccHHHHHHHHhcCCcCCCCHHHH
Q psy10257 47 TLNSVGGIQVLFPLFSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLSREHLTLEVL 126 (166)
Q Consensus 47 ~l~~IGGi~VLfPLf~Qld~~~~~~~~~dp~~~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iIg~LLqkvsp~~Lt~~vL 126 (166)
.+-.-||+..|..++.. .++++...-...+.++..+++.+++.+++..|+..+-.+|+.- +.++.
T Consensus 49 ~~~~~g~i~~L~~lL~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-----~~~v~ 113 (252)
T 4db8_A 49 AVIDAGALPALVQLLSS----------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-----NEQIL 113 (252)
T ss_dssp HHHHTTHHHHHHHGGGC----------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS-----CHHHH
T ss_pred HHHHcCcHHHHHHHHcC----------CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-----CHHHH
Confidence 44556888888877752 2366777777888888889999999999999988888888763 34555
Q ss_pred HHHHHHHHHH
Q psy10257 127 GSFLRFTKHL 136 (166)
Q Consensus 127 ~~l~~L~~~l 136 (166)
......+..+
T Consensus 114 ~~a~~~L~~l 123 (252)
T 4db8_A 114 QEALWALSNI 123 (252)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444443
No 7
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=46.42 E-value=42 Score=26.79 Aligned_cols=65 Identities=15% Similarity=0.261 Sum_probs=48.0
Q ss_pred chHHHHHhcCCccchhhhhhccCCCCCCCCCCChhhHHHHHHHHHHHHhhChHHHHHHHhcccHHHHHHHHhcCC
Q psy10257 43 SIHSTLNSVGGIQVLFPLFSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLS 117 (166)
Q Consensus 43 sikd~l~~IGGi~VLfPLf~Qld~~~~~~~~~dp~~~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iIg~LLqkvs 117 (166)
..+..+-.-|||..|.-|+ +. .++++-..-..-+.++-.+++.|...+.+..|...+-.+|.+.+
T Consensus 43 ~~r~~I~~~G~Ip~LV~lL---~s-------~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~ 107 (233)
T 3tt9_A 43 EARKRVNQLRGILKLLQLL---KV-------QNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTR 107 (233)
T ss_dssp HHHHHHHHTTHHHHHHHGG---GC-------CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHH---cC-------CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCC
Confidence 4677787889986555554 32 23455555666677777789999999999999999999998644
No 8
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=42.42 E-value=96 Score=22.56 Aligned_cols=79 Identities=15% Similarity=0.255 Sum_probs=55.1
Q ss_pred chHHHHHhcCCccchhhhhhccCCCCCCCCCCChhhHHHHHHHHHHHHhhChHHHHHHHhcccHHHHHHHHhcCCcCCCC
Q psy10257 43 SIHSTLNSVGGIQVLFPLFSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLSREHLT 122 (166)
Q Consensus 43 sikd~l~~IGGi~VLfPLf~Qld~~~~~~~~~dp~~~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iIg~LLqkvsp~~Lt 122 (166)
..++.+-.-||+..|..++. ..++++.......+.++...++.+++.+.+..++..+--+|+.-+
T Consensus 77 ~~~~~~~~~~~i~~l~~ll~----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~----- 141 (252)
T 4hxt_A 77 EAIKAIVDAGGVEVLVKLLT----------STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD----- 141 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTT----------CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-----
T ss_pred HHHHHHHHCCCHHHHHHHHc----------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC-----
Confidence 44555556677777777765 135778888888899998899999999999988888777776433
Q ss_pred HHHHHHHHHHHHHH
Q psy10257 123 LEVLGSFLRFTKHL 136 (166)
Q Consensus 123 ~~vL~~l~~L~~~l 136 (166)
.++..........+
T Consensus 142 ~~~~~~a~~~L~~l 155 (252)
T 4hxt_A 142 SEVQKEAARALANI 155 (252)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444433333
No 9
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=35.68 E-value=1.2e+02 Score=21.71 Aligned_cols=63 Identities=14% Similarity=0.218 Sum_probs=48.3
Q ss_pred hHHHHHhcCCccchhhhhhccCCCCCCCCCCChhhHHHHHHHHHHHHhhChHHHHHHHhcccHHHHHHHHhcC
Q psy10257 44 IHSTLNSVGGIQVLFPLFSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKL 116 (166)
Q Consensus 44 ikd~l~~IGGi~VLfPLf~Qld~~~~~~~~~dp~~~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iIg~LLqkv 116 (166)
.++.+-.-||+..|..++.. .++++...-+..+.++..+++.+++.+++..|...+-.+|+.-
T Consensus 46 ~~~~i~~~g~i~~L~~lL~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~ 108 (210)
T 4db6_A 46 QIQAVIDAGALPALVQLLSS----------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP 108 (210)
T ss_dssp HHHHHHHTTHHHHHHHHTTC----------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCS
T ss_pred HHHHHHHcCCHHHHHHHHcC----------CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCC
Confidence 34455556888888777742 2567777788888888889999999999999988888877654
No 10
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=35.40 E-value=1.3e+02 Score=22.11 Aligned_cols=76 Identities=14% Similarity=0.227 Sum_probs=55.8
Q ss_pred HHHHhcCCccchhhhhhccCCCCCCCCCCChhhHHHHHHHHHHHHhhChHHHHHHHhcccHHHHHHHHhcCCcCCCCHHH
Q psy10257 46 STLNSVGGIQVLFPLFSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLSREHLTLEV 125 (166)
Q Consensus 46 d~l~~IGGi~VLfPLf~Qld~~~~~~~~~dp~~~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iIg~LLqkvsp~~Lt~~v 125 (166)
+.+..-||+..|..++.. .++++....+..+.++..+++.+.+.+.+..++..+--+|+.- +.++
T Consensus 132 ~~~~~~~~i~~L~~lL~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-----~~~v 196 (252)
T 4db8_A 132 QAVIDAGALPALVQLLSS----------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-----NEQI 196 (252)
T ss_dssp HHHHHTTHHHHHHHGGGC----------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS-----SHHH
T ss_pred HHHHHCCCHHHHHHHHhC----------CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC-----CHHH
Confidence 666677888888777731 2567778888889999999999999999998888877777643 5666
Q ss_pred HHHHHHHHHHH
Q psy10257 126 LGSFLRFTKHL 136 (166)
Q Consensus 126 L~~l~~L~~~l 136 (166)
..........+
T Consensus 197 ~~~a~~~L~~l 207 (252)
T 4db8_A 197 LQEALWALSNI 207 (252)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 65554444444
No 11
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=35.16 E-value=1.2e+02 Score=21.66 Aligned_cols=79 Identities=14% Similarity=0.201 Sum_probs=55.3
Q ss_pred chHHHHHhcCCccchhhhhhccCCCCCCCCCCChhhHHHHHHHHHHHHhhChHHHHHHHhcccHHHHHHHHhcCCcCCCC
Q psy10257 43 SIHSTLNSVGGIQVLFPLFSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLSREHLT 122 (166)
Q Consensus 43 sikd~l~~IGGi~VLfPLf~Qld~~~~~~~~~dp~~~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iIg~LLqkvsp~~Lt 122 (166)
..++.+..-||+..|..++. ..++++...-...+.++..+++...+.+++..++..+--+|+.- +
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-----~ 151 (210)
T 4db6_A 87 EQIQAVIDAGALPALVQLLS----------SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-----N 151 (210)
T ss_dssp HHHHHHHHTTCHHHHHHHTT----------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-----C
T ss_pred HHHHHHHHCCCHHHHHHHHc----------CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-----C
Confidence 34556666788887777763 13577777888888999999999999999998888887777653 4
Q ss_pred HHHHHHHHHHHHHH
Q psy10257 123 LEVLGSFLRFTKHL 136 (166)
Q Consensus 123 ~~vL~~l~~L~~~l 136 (166)
.++.......+..+
T Consensus 152 ~~v~~~a~~aL~~l 165 (210)
T 4db6_A 152 EQILQEALWALSNI 165 (210)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55554444433333
No 12
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=33.37 E-value=1.8e+02 Score=24.83 Aligned_cols=75 Identities=11% Similarity=0.175 Sum_probs=56.5
Q ss_pred hHHHHHhcCCccchhhhhhccCCCCCCCCCCChhhHHHHHHHHHHHHhhChHHHHHHHhcccHHHHHHHHhcCCcCCCCH
Q psy10257 44 IHSTLNSVGGIQVLFPLFSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLSREHLTL 123 (166)
Q Consensus 44 ikd~l~~IGGi~VLfPLf~Qld~~~~~~~~~dp~~~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iIg~LLqkvsp~~Lt~ 123 (166)
-+.++-.-||+..|.-++. ..++++...-...+.++...++.+++.+.+..|...+-.+|++-..+....
T Consensus 135 ~~~~vv~~GaIp~Lv~lL~----------s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~ 204 (510)
T 3ul1_B 135 QTKAVVDGGAIPAFISLLA----------SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC 204 (510)
T ss_dssp HHHHHHHTTHHHHHHHHTT----------CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCH
T ss_pred HHHHHHHCCCHHHHHHHHc----------CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhH
Confidence 4455666688877776653 235667777777888899999999999999999999999988776666666
Q ss_pred HHHHH
Q psy10257 124 EVLGS 128 (166)
Q Consensus 124 ~vL~~ 128 (166)
.++..
T Consensus 205 ~~~~~ 209 (510)
T 3ul1_B 205 GYLRN 209 (510)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 13
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=29.29 E-value=1e+02 Score=24.80 Aligned_cols=55 Identities=9% Similarity=0.185 Sum_probs=40.7
Q ss_pred cCCccchhhhhhccCCCCCCCCCCChhhHHHHHHHHHHHHhhChHHHHHHHhcccHHHHHHHHhc
Q psy10257 51 VGGIQVLFPLFSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQK 115 (166)
Q Consensus 51 IGGi~VLfPLf~Qld~~~~~~~~~dp~~~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iIg~LLqk 115 (166)
-|++..|+.++.. .++++-..-+..+.++...++.+++.+++..++..+-.+|+.
T Consensus 106 ~~~i~~L~~lL~~----------~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~ 160 (450)
T 2jdq_A 106 AGAVPIFIELLSS----------EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK 160 (450)
T ss_dssp TTHHHHHHHHTTC----------SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS
T ss_pred CCCHHHHHHHHcC----------CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC
Confidence 4666666665531 356777777788888888889999999988888887777764
No 14
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=28.65 E-value=2e+02 Score=24.56 Aligned_cols=73 Identities=11% Similarity=0.193 Sum_probs=52.9
Q ss_pred HHHHhcCCccchhhhhhccCCCCCCCCCCChhhHHHHHHHHHHHHhhChHHHHHHHhcccHHHHHHHHhcCCcCCCCHHH
Q psy10257 46 STLNSVGGIQVLFPLFSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLSREHLTLEV 125 (166)
Q Consensus 46 d~l~~IGGi~VLfPLf~Qld~~~~~~~~~dp~~~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iIg~LLqkvsp~~Lt~~v 125 (166)
.++-.-|++..|.-|+. ..++++...-...+.++...++.+++.+++..|+..+-.+|+.-..+.....+
T Consensus 156 ~~vv~~Gaip~Lv~LL~----------s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~ 225 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLA----------SPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGY 225 (529)
T ss_dssp HHHHHTTHHHHHHHHTT----------CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHH
T ss_pred HHHHHCCCHHHHHHHHc----------CCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHH
Confidence 45555677766655542 23566666777778888899999999999999998888888776666666665
Q ss_pred HHH
Q psy10257 126 LGS 128 (166)
Q Consensus 126 L~~ 128 (166)
+..
T Consensus 226 ~~~ 228 (529)
T 3tpo_A 226 LRN 228 (529)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 15
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=27.14 E-value=1.2e+02 Score=25.10 Aligned_cols=65 Identities=14% Similarity=0.216 Sum_probs=46.4
Q ss_pred hHHHHHhcCCccchhhhhhccCCCCCCCCCCChhhHHHHHHHHHHHHhhChHHHHHHHhcccHHHHHHHHhcCCc
Q psy10257 44 IHSTLNSVGGIQVLFPLFSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLSR 118 (166)
Q Consensus 44 ikd~l~~IGGi~VLfPLf~Qld~~~~~~~~~dp~~~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iIg~LLqkvsp 118 (166)
.++.+..-||+..|..++.. .++++-......+.++..+++.+++.+.+..|+..+-.+|+.-++
T Consensus 135 ~~~~i~~~g~i~~L~~ll~~----------~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~ 199 (529)
T 1jdh_A 135 AKMAVRLAGGLQKMVALLNK----------TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY 199 (529)
T ss_dssp HHHHHHHHTHHHHHHHGGGC----------CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCC
T ss_pred hHHHHHHcCCHHHHHHHHhc----------CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCCh
Confidence 34455556887777777642 234555555666777777899999999999999888888876543
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=25.52 E-value=2.3e+02 Score=23.64 Aligned_cols=59 Identities=17% Similarity=0.225 Sum_probs=44.0
Q ss_pred HHhcCCccchhhhhhccCCCCCCCCCCChhhHHHHHHHHHHHHhhChHHHHHHHhcccHHHHHHHHhcC
Q psy10257 48 LNSVGGIQVLFPLFSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKL 116 (166)
Q Consensus 48 l~~IGGi~VLfPLf~Qld~~~~~~~~~dp~~~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iIg~LLqkv 116 (166)
+..-|++..|..++.. .++.+....+..+.++..+++...+.++...++..+--+|+..
T Consensus 282 ~~~~g~v~~Lv~lL~~----------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~ 340 (528)
T 4b8j_A 282 VIEAGVCPRLVELLLH----------PSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQN 340 (528)
T ss_dssp HHHTTCHHHHHHHTTC----------SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSC
T ss_pred HHHcCHHHHHHHHHcC----------CChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCC
Confidence 3344677666666532 2456777788888889999999999999988888888888754
No 17
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=25.47 E-value=1.7e+02 Score=25.54 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=48.3
Q ss_pred chHHHHHhcCCccchhhhhhccCCCCCCCCCCChhhHHHHHHHHHHHHhhChHHHHHHH-hcccHHHHHHHHhcCCc
Q psy10257 43 SIHSTLNSVGGIQVLFPLFSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHII-QNRGFLAISYMLQKLSR 118 (166)
Q Consensus 43 sikd~l~~IGGi~VLfPLf~Qld~~~~~~~~~dp~~~~~lL~ll~~lL~~s~~nQeqm~-~~~Gf~iIg~LLqkvsp 118 (166)
..++++---||+..|..++.. ..+++.....+..+.++-..+..|+.++. ...|...+--+|+.-++
T Consensus 277 ~~k~~I~~~GaI~~LV~lLl~---------s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~ 344 (458)
T 3nmz_A 277 NSKKTLREVGSVKALMECALE---------VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQ 344 (458)
T ss_dssp HHHHHHHHTTHHHHHHHHHTT---------CCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCS
T ss_pred HHHHHHHHcCCHHHHHHHHhc---------CCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCC
Confidence 366788788998887776421 12455666667777777777889999998 67788888888876554
No 18
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=22.87 E-value=1.2e+02 Score=25.94 Aligned_cols=78 Identities=8% Similarity=0.131 Sum_probs=46.2
Q ss_pred hHHHHHhcCCccchhhhhhccCCCCCCCCCCChhhHHHHHHHHHHHHhhChHHHHHHHhcccHHHHHHHHhcCCcCCCCH
Q psy10257 44 IHSTLNSVGGIQVLFPLFSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLSREHLTL 123 (166)
Q Consensus 44 ikd~l~~IGGi~VLfPLf~Qld~~~~~~~~~dp~~~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iIg~LLqkvsp~~Lt~ 123 (166)
|+.++. -||+..|.-|+..- .+|++-..-...++++..+++.+.+.+++..|...+-.+|+.- ...+-.
T Consensus 93 i~~ii~-~G~ip~LV~lL~~~---------~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~-~~~v~e 161 (510)
T 3ul1_B 93 IDNIIR-AGLIPKFVSFLGKT---------DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP-HAHISE 161 (510)
T ss_dssp HHHHHH-TTHHHHHHHHTTCT---------TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHH
T ss_pred HHHHHH-CCCHHHHHHHHCCC---------CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHH
Confidence 444444 36665555555322 2344433445567778889999999999998888887777642 222333
Q ss_pred HHHHHHHHH
Q psy10257 124 EVLGSFLRF 132 (166)
Q Consensus 124 ~vL~~l~~L 132 (166)
..+.++.++
T Consensus 162 ~A~~aL~nL 170 (510)
T 3ul1_B 162 QAVWALGNI 170 (510)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444444
No 19
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=21.88 E-value=1.2e+02 Score=25.43 Aligned_cols=77 Identities=10% Similarity=0.177 Sum_probs=48.4
Q ss_pred HHHHhcCCccchhhhhhccCCCCCCCCCCChhhHHHHHHHHHHHHhhChHHHHHHHhcccHHHHHHHHhcCCcCCCCHHH
Q psy10257 46 STLNSVGGIQVLFPLFSQLDLPCDSADKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLSREHLTLEV 125 (166)
Q Consensus 46 d~l~~IGGi~VLfPLf~Qld~~~~~~~~~dp~~~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iIg~LLqkvsp~~Lt~~v 125 (166)
..+-.-|++..|..++.. .++++...-+..+.++...++.+++.+....++..+-.+|++. -+.++
T Consensus 154 ~~~~~~g~i~~L~~lL~~----------~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~----~~~~v 219 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGS----------SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH----TKLSM 219 (528)
T ss_dssp HHHHHTTHHHHHHHHTTC----------SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT----CCHHH
T ss_pred HHHHhCCcHHHHHHHhcC----------CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC----CCHHH
Confidence 334444667666666532 3567777777888888889999999999887776665555332 24455
Q ss_pred HHHHHHHHHHH
Q psy10257 126 LGSFLRFTKHL 136 (166)
Q Consensus 126 L~~l~~L~~~l 136 (166)
.......+..+
T Consensus 220 ~~~a~~~L~~L 230 (528)
T 4b8j_A 220 LRNATWTLSNF 230 (528)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444333333
Done!