RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10257
         (166 letters)



>gnl|CDD|225913 COG3378, COG3378, Phage associated DNA primase [General function
           prediction only].
          Length = 517

 Score = 28.9 bits (65), Expect = 1.5
 Identities = 9/56 (16%), Positives = 15/56 (26%), Gaps = 5/56 (8%)

Query: 72  DKKDPHLCSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLSREHLTLEVLG 127
              DP  C K   ++  +      ++     N     I   L     E     + G
Sbjct: 187 PAADPSHCPKWREWLDRVAGGDPELR-----NLLQRIIGASLTGRVSEQKLFWLYG 237


>gnl|CDD|153098 cd00904, Ferritin, Ferritin iron storage proteins.  Ferritins are
           the primary iron storage proteins of most living
           organisms and members of a broad superfamily of
           ferritin-like diiron-carboxylate proteins. The iron-free
           (apoferritin) ferritin molecule is a protein shell
           composed of 24 protein chains arranged in 432 symmetry.
           Iron storage involves the uptake of iron (II) at the
           protein shell, its oxidation by molecular oxygen at the
           dinuclear ferroxidase centers, and the movement of iron
           (III) into the cavity for deposition as ferrihydrite;
           the protein shell can hold up to 4500 iron atoms. In
           vertebrates, two types of chains (subunits) have been
           characterized, H or M (fast) and L (slow), which differ
           in rates of iron uptake and mineralization. Bacterial
           non-heme ferritins are composed only of H chains. Fe(II)
           oxidation in the H/M subunits take place initially at
           the ferroxidase center, a carboxylate-bridged diiron
           center, located within the subunit four-helix bundle. In
           a complementary role, negatively charged residues on the
           protein shell inner surface of the L subunits promote
           ferrihydrite nucleation. Most plant ferritins combine
           both oxidase and nucleation functions in one chain: they
           have four interior glutamate residues as well as seven
           ferroxidase center residues.
          Length = 160

 Score = 27.6 bits (61), Expect = 2.3
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 32  MLQDVKAVITHSIHSTLNSVGGIQVLFPLFSQ--LDLPCDSADKKDPHLCSKL-LGFICE 88
            LQD++   +     TL+++     L    +Q  LDL   ++++KDPHLC  L   F+ E
Sbjct: 69  ELQDIEKPPSDEWGGTLDAMEAALKLEKFVNQALLDLHELASEEKDPHLCDFLESHFLDE 128

Query: 89  LVESSQTVQQHI 100
            V+  + V   +
Sbjct: 129 QVKEIKQVGDIL 140


>gnl|CDD|226402 COG3885, COG3885, Uncharacterized conserved protein [Function
          unknown].
          Length = 261

 Score = 27.4 bits (61), Expect = 3.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 18 KGNPTYFVHTPHALMLQDVKAVI 40
          KG+ TY V +PH + L D  AVI
Sbjct: 37 KGSETYVVISPHGIRLDDYIAVI 59


>gnl|CDD|217193 pfam02705, K_trans, K+ potassium transporter.  This is a family of
           K+ potassium transporters that are conserved across
           phyla, having both bacterial (KUP), yeast (HAK), and
           plant (AtKT) sequences as members.
          Length = 534

 Score = 27.1 bits (61), Expect = 5.9
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 30  ALMLQDVKAVITHSIHSTLNSVGGIQVLFPLFSQLDLP 67
           AL+  D   VIT +I S L++V G++V  P      +P
Sbjct: 101 ALLYGD--GVITPAI-SVLSAVEGLEVASPSLEPYVVP 135


>gnl|CDD|182864 PRK10955, PRK10955, DNA-binding transcriptional regulator CpxR;
           Provisional.
          Length = 232

 Score = 26.3 bits (58), Expect = 8.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 106 FLAISYMLQKLSREHLTLEVLGSFL 130
           +L   ++ Q +SREHL+ EVLG  L
Sbjct: 166 YLLAQHLGQVVSREHLSQEVLGKRL 190


>gnl|CDD|218534 pfam05278, PEARLI-4, Arabidopsis phospholipase-like protein (PEARLI
           4).  This family contains several phospholipase-like
           proteins from Arabidopsis thaliana which are homologous
           to PEARLI 4.
          Length = 234

 Score = 25.9 bits (57), Expect = 9.4
 Identities = 15/37 (40%), Positives = 17/37 (45%)

Query: 92  SSQTVQQHIIQNRGFLAISYMLQKLSREHLTLEVLGS 128
           S  T  Q II   G +A +  LQ LS     LE L S
Sbjct: 62  SVSTTLQAIIDKHGDIASNSKLQSLSTRSYYLECLAS 98


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0804    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,877,608
Number of extensions: 675289
Number of successful extensions: 626
Number of sequences better than 10.0: 1
Number of HSP's gapped: 626
Number of HSP's successfully gapped: 11
Length of query: 166
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 76
Effective length of database: 6,945,742
Effective search space: 527876392
Effective search space used: 527876392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (24.8 bits)