RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10257
(166 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 2e-05
Identities = 27/134 (20%), Positives = 43/134 (32%), Gaps = 45/134 (33%)
Query: 39 VITH-SI-HSTLNSVGGIQVLFPLFSQL------DLPCDS---ADKKDP----HLCSKLL 83
++H S+ H L F + SQL LP + A +P L K L
Sbjct: 10 TLSHGSLEHVLLVPTA----SFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL 65
Query: 84 GFICELVESSQTVQQHIIQNRGFLAISYMLQKLSREHLTLEVLGSFLR-FTK----H-LV 137
G++ LVE S+ Q + + L F + + H L
Sbjct: 66 GYVSSLVEPSKVGQ--------------------FDQVLNLCLTEFENCYLEGNDIHALA 105
Query: 138 TCLTPNSELLLKQV 151
L ++ L +
Sbjct: 106 AKLLQENDTTLVKT 119
>2irp_A Putative aldolase class 2 protein AQ_1979; aldehyde, enzymatic
mechanism; 2.40A {Aquifex aeolicus}
Length = 208
Score = 28.4 bits (64), Expect = 1.0
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 35 DVKAVI-THSIHSTLNSVGGIQVLFPLFSQLDLPC 68
+V AV+ THS ++T+ S+ + L L
Sbjct: 93 EVNAVVHTHSPNATVISIVEKKDFVELEDYELLKA 127
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 1.8
Identities = 26/176 (14%), Positives = 56/176 (31%), Gaps = 36/176 (20%)
Query: 9 SQLCLQSAPKGNPTYFVHTPHALMLQDVKAVITH--SIHSTL-NSVGGIQVLFPLFSQLD 65
++L S + P + ++ L ++K + + ++H ++ + + F D
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYL-ELKVKLENEYALHRSIVDHYNIPKT----FDSDD 463
Query: 66 LPCDSADKKDPHLCSKLLGFICE-----LVESSQTVQQHIIQNRGFLAISYMLQKLSREH 120
L D + L ++ + FL ++ QK+ +
Sbjct: 464 LIPPYLD-----------QYFYSHIGHHLKNIEHP-ERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 121 LTLEVLGSF------LRFTKHLVTCLTPNSELLLKQV-----SISCVIILDSFICL 165
GS L+F K + P E L+ + I +I + L
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567
Score = 26.0 bits (56), Expect = 8.4
Identities = 23/186 (12%), Positives = 50/186 (26%), Gaps = 79/186 (42%)
Query: 3 NPVATDSQLCLQSAPKGNPTYFVHTPH-------ALM-LQDVKAVITHSIHSTLNSVGGI 54
+ + D+Q+ Y V AL+ L+ K V+ V G
Sbjct: 117 DRLYNDNQVF--------AKYNVSRLQPYLKLRQALLELRPAKNVLIDG-------VLGS 161
Query: 55 --QVL-------FPLFSQLDLP--------CDSAD---KKDPHLCSKLLGFICELVESSQ 94
+ + + ++D C+S + + L ++ + S
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 95 TVQQHIIQNRGFLAISYMLQKLSREHLTLEVLGSFLRFTKHLVTCLTPNSELLLKQVSIS 154
++ I + +L R L+ + N
Sbjct: 222 NIKLRIHSIQ---------AELRR----------LLKSKPY------EN----------- 245
Query: 155 CVIILD 160
C+++L
Sbjct: 246 CLLVLL 251
>3bvf_A Ferritin; iron storage, metal-binding, oxidoreductase; 1.50A
{Helicobacter pylori} PDB: 3bve_A 3bvi_A 3bvk_A 3bvl_A
3egm_A
Length = 181
Score = 26.5 bits (59), Expect = 3.4
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 72 DKKDPHLCSKLLGFICELVESSQTVQQHI 100
KD + L ++ E E + +
Sbjct: 124 KSKDHATFNFLQWYVAEQHEEEVLFKDIL 152
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure
initiative, center for eukaryotic structural genomics;
HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB:
3iaa_A*
Length = 415
Score = 26.6 bits (59), Expect = 4.2
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 7/39 (17%)
Query: 28 PHALMLQDVKAVITH----SIHSTLNSVGGI-QVLFPLF 61
PH +L+ +TH ++ L G V+ P
Sbjct: 306 PHVKVLEQATVCVTHGGMGTLMEALYW--GRPLVVVPQS 342
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal
binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1
PDB: 1sq3_A 3kx9_A
Length = 173
Score = 26.4 bits (59), Expect = 4.3
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 72 DKKDPHLCSKLLGFICELVESSQTVQQHI 100
+KD + L ++ E VE + +
Sbjct: 112 QEKDFATYNFLQWYVAEQVEEEASALDIV 140
>2v2p_A Ferritin light chain; metal transport, iron, haemin, apoferritin,
iron storage, metal-binding; 1.15A {Equus caballus} PDB:
2v2r_A 2v2m_A 2v2l_A 2v2s_A 2v2o_A 2v2n_A 2za6_A 2v2j_A
2v2i_A 2z5p_A 1dat_A 2g4h_A 1aew_A 3h7g_A 2zg9_X 2zg8_X
3fi6_A 3o7r_A 2w0o_A 1hrs_A* ...
Length = 174
Score = 26.2 bits (58), Expect = 4.3
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 72 DKKDPHLCSKLLG-FICELVESSQTVQQHIIQNRGFLAIS-----YMLQKLSREH 120
+ DPHLC L F+ E V+ + + H+ + + Y+ ++L+ +H
Sbjct: 119 AQADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGLGEYLFERLTLKH 173
>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme
protein, iron storage, iron, metal-binding,
oxidoreductase, phosphorylation; 1.5A {Homo sapiens}
PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A
2cn6_A 3ajo_A 3ajq_A 3ajp_A 3erz_A 3es3_A 2z6m_A 1r03_A
Length = 183
Score = 26.1 bits (58), Expect = 4.6
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 72 DKKDPHLCSKLLG-FICELVESSQTVQQHI 100
DK DPHLC + ++ E V++ + + H+
Sbjct: 124 DKNDPHLCDFIETHYLNEQVKAIKELGDHV 153
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase;
2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Length = 189
Score = 26.1 bits (58), Expect = 5.1
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 72 DKKDPHLCSKLLGFICELVESSQTVQQHI 100
D+ D + F+ E +E + +
Sbjct: 115 DEGDFLGEQFMQWFLQEQIEEVALMATLV 143
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 26.3 bits (58), Expect = 5.3
Identities = 5/37 (13%), Positives = 12/37 (32%), Gaps = 3/37 (8%)
Query: 28 PHALMLQDVKAVITHS-IHSTLNSVG-GI-QVLFPLF 61
P +L+ +TH+ + + + P
Sbjct: 292 PQLAILRQADLFVTHAGAGGSQEGLATATPMIAVPQA 328
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A
{Micromonospora echinospora}
Length = 402
Score = 26.2 bits (58), Expect = 5.4
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Query: 28 PHALMLQDVKAVITH----SIHSTLNSVGGI-QVLFPLFS 62
P +L +A +TH ++ + G+ VL P F+
Sbjct: 290 PFHSVLAHARACLTHGTTGAVLEAFAA--GVPLVLVPHFA 327
>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon,
entry channels, thermostability, hyperthermophIle,
ferroxidase center; 2.75A {Pyrococcus furiosus} PDB:
2jd7_0 2jd8_0 2x17_0
Length = 174
Score = 26.0 bits (58), Expect = 5.5
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 72 DKKDPHLCSKLLGFICELVESSQTVQQHI 100
++KD + L FI E VE +V++ +
Sbjct: 110 EEKDYSTRAFLEWFINEQVEEEASVKKIL 138
>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu
initiative, PSI, joint center for structural genomics,
META protein; 2.00A {Thermotoga maritima} SCOP: a.25.1.1
PDB: 1z4a_A*
Length = 176
Score = 26.0 bits (58), Expect = 5.7
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 72 DKKDPHLCSKLLGFICELVESSQTVQQHI 100
++KD S L F+ E VE V++ +
Sbjct: 124 EEKDHATVSFLKWFVDEQVEEEDQVREIL 152
>3qz3_A Ferritin; structural genomics, the center for structural genomics
of I diseases, csgid, cytoplasmic, oxidoreductase; 2.10A
{Vibrio cholerae o1 biovar el tor}
Length = 184
Score = 25.7 bits (57), Expect = 5.9
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 72 DKKDPHLCSKLLGFICELVESSQTVQQHI 100
+D + L ++ E E + + +
Sbjct: 119 TSQDYSTFNFLQWYVAEQHEEEKLFKGIL 147
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli}
SCOP: a.25.1.1
Length = 165
Score = 25.7 bits (57), Expect = 6.7
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 72 DKKDPHLCSKLLGFICELVESSQTVQQHI 100
+D + L ++ E E + + I
Sbjct: 110 TNQDYPTFNFLQWYVSEQHEEEKLFKSII 138
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A
{Pseudo-nitzschia multiseries} PDB: 3e6r_A
Length = 168
Score = 25.6 bits (57), Expect = 6.8
Identities = 4/29 (13%), Positives = 9/29 (31%)
Query: 72 DKKDPHLCSKLLGFICELVESSQTVQQHI 100
D + + L F + V + +
Sbjct: 111 TCHDFAVMAFLNPFHLQQVNEEDKIGSIL 139
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A
{Campylobacter jejuni} SCOP: a.25.1.1
Length = 167
Score = 25.7 bits (57), Expect = 6.8
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 72 DKKDPHLCSKLLGFICELVESSQTVQQHI 100
KD + L ++ E E + +
Sbjct: 110 THKDYSTFNFLQWYVSEQHEEEALFRGIV 138
>3kxu_A Ferritin; iron storage protein, disorder, iron, metal binding
protein; 1.85A {Homo sapiens} PDB: 3hx2_A 3hx5_A 3hx7_A
Length = 191
Score = 25.5 bits (56), Expect = 9.0
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 72 DKKDPHLCSKLLG-FICELVESSQTVQQHI 100
+ DPHLC L F+ E V+ + + H+
Sbjct: 120 ARTDPHLCDFLETHFLDEEVKLIKKMGDHL 149
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.137 0.409
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,238,115
Number of extensions: 111445
Number of successful extensions: 310
Number of sequences better than 10.0: 1
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 29
Length of query: 166
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 79
Effective length of database: 4,272,666
Effective search space: 337540614
Effective search space used: 337540614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.0 bits)