RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10257
         (166 letters)



>d2foka4 c.52.1.12 (A:387-579) Restriction endonuclease FokI,
           C-terminal (catalytic) domain {Flavobacterium
           okeanokoites [TaxId: 244]}
          Length = 193

 Score = 26.4 bits (58), Expect = 1.7
 Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 119 EHLTLEVLGSFLRFT-KHLVTCLTPNSELLLKQVSISCVIILDS 161
           E   +E       +  KHL     P+  +      I   +I+D+
Sbjct: 39  EMKVMEFFMKVYGYRGKHLGGSRKPDGAIYTVGSPIDYGVIVDT 82


>d1vlga_ a.25.1.1 (A:) Non-hem ferritin {Thermotoga maritima [TaxId:
           2336]}
          Length = 164

 Score = 24.2 bits (52), Expect = 8.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 72  DKKDPHLCSKLLGFICELVESSQTVQQHI 100
           ++KD    S L  F+ E VE    V++ +
Sbjct: 112 EEKDHATVSFLKWFVDEQVEEEDQVREIL 140


>d1aola_ b.20.1.1 (A:) F-MuLV receptor-binding domain {Friend
          murine leukemia virus [TaxId: 11795]}
          Length = 228

 Score = 24.2 bits (52), Expect = 8.6
 Identities = 8/28 (28%), Positives = 10/28 (35%)

Query: 53 GIQVLFPLFSQLDLPCDSADKKDPHLCS 80
          G++   P  S    PC S        CS
Sbjct: 49 GLEYQAPYSSPPGPPCCSGSSGSSAGCS 76


>d1wmza_ d.169.1.1 (A:) Lectin CEL-I {Cucumaria echinata [TaxId:
           40245]}
          Length = 140

 Score = 23.7 bits (49), Expect = 9.7
 Identities = 2/11 (18%), Positives = 6/11 (54%)

Query: 79  CSKLLGFICEL 89
            +    ++C+L
Sbjct: 127 AAAQAKYMCKL 137


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0594    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 546,272
Number of extensions: 21405
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 10
Length of query: 166
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 87
Effective length of database: 1,322,926
Effective search space: 115094562
Effective search space used: 115094562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (22.9 bits)