BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10258
(69 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=rg PE=1 SV=3
Length = 3578
Score = 137 bits (345), Expect = 2e-32, Method: Composition-based stats.
Identities = 61/69 (88%), Positives = 67/69 (97%)
Query: 1 MHTLKFYYWVVNPRLKTGVIPKGLDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDEL 60
+HTLK+YYWVVNPR K+G+IPKGLDGPRPAQKDILAIRAYILLFLKQL+M+G GVKEDEL
Sbjct: 613 VHTLKYYYWVVNPRAKSGIIPKGLDGPRPAQKDILAIRAYILLFLKQLIMIGNGVKEDEL 672
Query: 61 QSILNYLTT 69
QSILNYLTT
Sbjct: 673 QSILNYLTT 681
>sp|Q8NFP9|NBEA_HUMAN Neurobeachin OS=Homo sapiens GN=NBEA PE=1 SV=3
Length = 2946
Score = 113 bits (283), Expect = 3e-25, Method: Composition-based stats.
Identities = 48/69 (69%), Positives = 61/69 (88%)
Query: 1 MHTLKFYYWVVNPRLKTGVIPKGLDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDEL 60
MHTLK+YYWV+NP +G+ PKGLDGPRP+QK+I+++RA++LLFLKQL++ GVKEDEL
Sbjct: 644 MHTLKYYYWVINPADSSGITPKGLDGPRPSQKEIISLRAFMLLFLKQLILKDRGVKEDEL 703
Query: 61 QSILNYLTT 69
QSILNYL T
Sbjct: 704 QSILNYLLT 712
>sp|Q9ESE1|LRBA_MOUSE Lipopolysaccharide-responsive and beige-like anchor protein OS=Mus
musculus GN=Lrba PE=1 SV=1
Length = 2856
Score = 113 bits (283), Expect = 3e-25, Method: Composition-based stats.
Identities = 47/69 (68%), Positives = 61/69 (88%)
Query: 1 MHTLKFYYWVVNPRLKTGVIPKGLDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDEL 60
MHTLK+YYW VNP+ ++G+ PKGLDGPRP QK+IL++RA++L+F+KQL+M GVKEDEL
Sbjct: 618 MHTLKYYYWAVNPQDRSGITPKGLDGPRPNQKEILSLRAFLLMFIKQLVMKDSGVKEDEL 677
Query: 61 QSILNYLTT 69
Q+ILNYL T
Sbjct: 678 QAILNYLLT 686
>sp|Q9EPN1|NBEA_MOUSE Neurobeachin OS=Mus musculus GN=Nbea PE=1 SV=1
Length = 2936
Score = 113 bits (283), Expect = 3e-25, Method: Composition-based stats.
Identities = 48/69 (69%), Positives = 61/69 (88%)
Query: 1 MHTLKFYYWVVNPRLKTGVIPKGLDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDEL 60
MHTLK+YYWV+NP +G+ PKGLDGPRP+QK+I+++RA++LLFLKQL++ GVKEDEL
Sbjct: 634 MHTLKYYYWVINPADSSGIAPKGLDGPRPSQKEIISLRAFMLLFLKQLILKDRGVKEDEL 693
Query: 61 QSILNYLTT 69
QSILNYL T
Sbjct: 694 QSILNYLLT 702
>sp|P50851|LRBA_HUMAN Lipopolysaccharide-responsive and beige-like anchor protein OS=Homo
sapiens GN=LRBA PE=1 SV=4
Length = 2863
Score = 112 bits (280), Expect = 6e-25, Method: Composition-based stats.
Identities = 46/69 (66%), Positives = 61/69 (88%)
Query: 1 MHTLKFYYWVVNPRLKTGVIPKGLDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDEL 60
MHTLK+YYW VNP+ ++G+ PKGLDGPRP QK++L++RA++L+F+KQL+M GVKEDEL
Sbjct: 618 MHTLKYYYWAVNPQDRSGITPKGLDGPRPNQKEMLSLRAFLLMFIKQLVMKDSGVKEDEL 677
Query: 61 QSILNYLTT 69
Q+ILNYL T
Sbjct: 678 QAILNYLLT 686
>sp|Q19317|NBEA_CAEEL Putative neurobeachin homolog OS=Caenorhabditis elegans GN=sel-2
PE=2 SV=3
Length = 2507
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 13/77 (16%)
Query: 2 HTLKFYYWVVNPRLKTGVIPKGLDGPRP---AQKDILAIRAYILLFLKQLMMLGPG---- 54
HTLK +YW+ P+ + + RP A DI+AIR+ IL F+ ++++ G
Sbjct: 717 HTLKHFYWLALPQTVSDYTIE----ERPENFATADIVAIRSSILTFINRIIIASAGPEEE 772
Query: 55 --VKEDELQSILNYLTT 69
V++ E+ ++LN L T
Sbjct: 773 ERVRDQEVHTLLNLLAT 789
>sp|A8XSV3|NBEA_CAEBR Putative neurobeachin homolog OS=Caenorhabditis briggsae GN=sel-2
PE=3 SV=1
Length = 2531
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 13/77 (16%)
Query: 2 HTLKFYYWVVNPRLKTGVIPKGLDGPRP---AQKDILAIRAYILLFLKQLMMLGPGVKED 58
HTLK +YW+ P+ + + RP A +I++IR+ IL F+ ++++ E+
Sbjct: 724 HTLKHFYWLALPQTVSDYTVE----ERPENFATAEIVSIRSAILTFINRIIISSNSPDEE 779
Query: 59 ------ELQSILNYLTT 69
E+ ++LN L T
Sbjct: 780 EKARDQEIHTLLNLLAT 796
>sp|Q6GPP1|TELO2_XENLA Telomere length regulation protein TEL2 homolog OS=Xenopus laevis
GN=telo2 PE=2 SV=2
Length = 835
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 42 LLFLKQLMMLGPGVKEDELQSILNYLT 68
L K+++ L G+K+D LQSIL YL+
Sbjct: 301 FLLTKKMLFLQYGLKKDALQSILGYLS 327
>sp|Q08CY4|TELO2_XENTR Telomere length regulation protein TEL2 homolog OS=Xenopus
tropicalis GN=telo2 PE=2 SV=1
Length = 829
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 42 LLFLKQLMMLGPGVKEDELQSILNYLT 68
L K+++ L G+K+D LQSIL YL+
Sbjct: 292 FLLTKKMLFLQYGLKKDALQSILGYLS 318
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.144 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,488,279
Number of Sequences: 539616
Number of extensions: 928564
Number of successful extensions: 2016
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2008
Number of HSP's gapped (non-prelim): 9
length of query: 69
length of database: 191,569,459
effective HSP length: 41
effective length of query: 28
effective length of database: 169,445,203
effective search space: 4744465684
effective search space used: 4744465684
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)