Query psy10258
Match_columns 69
No_of_seqs 37 out of 39
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 21:52:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10258.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10258hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c75_A Cytochrome C-553; heme, 86.6 1 3.4E-05 24.4 3.7 20 50-69 50-69 (71)
2 1f1f_A Cytochrome C6; heme, pr 86.4 2 6.8E-05 23.5 5.0 44 26-69 28-83 (89)
3 2l4d_A SCO1/SENC family protei 79.2 0.99 3.4E-05 25.8 1.8 21 49-69 75-95 (110)
4 2blf_B SORB, sulfite\:cytochro 79.2 1.6 5.5E-05 25.3 2.7 25 45-69 54-79 (81)
5 2exv_A Cytochrome C-551; alpha 79.1 1.6 5.3E-05 23.8 2.5 16 54-69 65-80 (82)
6 3a9f_A Cytochrome C; alpha hel 78.5 2.6 8.9E-05 25.9 3.6 25 44-68 64-89 (92)
7 1ayg_A Cytochrome C-552; elect 77.6 1.2 4.2E-05 24.5 1.8 16 54-69 63-78 (80)
8 2zxy_A Cytochrome C552, cytoch 75.9 1.7 5.7E-05 23.6 2.0 16 54-69 70-85 (87)
9 3ph2_B Cytochrome C6; photosyn 74.1 6.8 0.00023 21.1 4.3 16 54-69 65-80 (86)
10 1a56_A C-551, ferricytochrome 73.7 2.9 0.0001 22.8 2.7 16 54-69 64-79 (81)
11 2d0s_A Cytochrome C, cytochrom 73.5 2.8 9.5E-05 22.8 2.6 16 54-69 62-77 (79)
12 1cch_A Cytochrome C551; electr 72.8 1.9 6.5E-05 23.4 1.7 16 54-69 65-80 (82)
13 1cyi_A Cytochrome C6, cytochro 72.0 10 0.00034 20.8 5.1 16 54-69 66-81 (90)
14 1c53_A Cytochrome C553; electr 71.3 2.2 7.5E-05 23.4 1.8 16 54-69 63-78 (79)
15 1kx2_A Mono-heme C-type cytoch 71.0 2.8 9.6E-05 23.3 2.2 16 54-69 64-79 (81)
16 1gdv_A Cytochrome C6; RED ALGA 70.7 5.5 0.00019 21.4 3.4 16 54-69 64-79 (85)
17 1cno_A Cytochrome C552; electr 68.2 2.4 8.3E-05 23.6 1.6 16 54-69 66-81 (87)
18 3cp5_A Cytochrome C; electron 67.5 2.8 9.6E-05 24.6 1.8 20 50-69 100-119 (124)
19 1c6r_A Cytochrome C6; electron 67.4 2.7 9.1E-05 23.1 1.6 16 54-69 67-82 (89)
20 1w2l_A Cytochrome oxidase subu 67.4 3.3 0.00011 23.0 2.0 16 54-69 82-97 (99)
21 1cc5_A Cytochrome C5; electron 66.7 3.5 0.00012 23.4 2.0 15 55-69 68-82 (83)
22 1gks_A Cytochrome C551; haloph 66.5 3.9 0.00013 22.6 2.2 16 54-69 61-76 (78)
23 1wve_C 4-cresol dehydrogenase 65.9 2.9 0.0001 23.2 1.6 16 54-69 57-72 (80)
24 3dr0_A Cytochrome C6; photosyn 65.5 2.9 9.9E-05 22.8 1.5 16 54-69 71-86 (93)
25 3dmi_A Cytochrome C6; electron 64.6 3.7 0.00013 22.3 1.8 15 55-69 67-81 (88)
26 2ce0_A Cytochrome C6; chloropl 63.8 3.3 0.00011 23.4 1.5 16 54-69 78-93 (105)
27 2zon_G Cytochrome C551; nitrit 63.7 3.2 0.00011 22.9 1.5 16 54-69 69-84 (87)
28 3o0r_C Nitric oxide reductase 62.9 9 0.00031 23.2 3.5 31 38-68 92-130 (146)
29 1ls9_A Cytochrome C6; omega lo 62.7 3.7 0.00013 22.8 1.6 16 54-69 69-84 (91)
30 3cu4_A Cytochrome C family pro 62.1 3.3 0.00011 22.7 1.3 15 54-68 67-81 (85)
31 2zzs_A Cytochrome C554; C-type 61.1 3.9 0.00013 23.2 1.6 16 54-69 86-101 (103)
32 1i54_A Cytochrome C; zinc-porp 60.5 4.2 0.00014 23.0 1.6 17 53-69 83-100 (103)
33 3t7h_A Ubiquitin-like modifier 59.4 2.6 9E-05 30.5 0.7 13 5-17 137-149 (291)
34 2w9k_A Cytochrome C, cytochrom 58.5 5.8 0.0002 23.1 2.0 15 55-69 97-111 (114)
35 3vx6_A E1; 2.60A {Kluyveromyce 58.4 2.8 9.6E-05 30.4 0.7 13 5-17 135-147 (283)
36 3vx8_D Ubiquitin-like modifier 58.2 2.8 9.7E-05 30.7 0.7 43 5-47 147-193 (323)
37 2igp_A Retinoblastoma-associat 56.5 6.9 0.00024 25.1 2.3 41 19-65 36-80 (120)
38 1ccr_A Cytochrome C; electron 56.0 5.5 0.00019 23.1 1.6 16 54-69 93-109 (112)
39 1ycc_A Cytochrome C; electron 55.8 5.2 0.00018 23.0 1.5 17 53-69 88-105 (108)
40 1c52_A Cytochrome-C552; electr 55.0 5.3 0.00018 24.2 1.5 16 54-69 74-89 (131)
41 2c1d_B SOXX; sulfur oxidation, 54.7 8.1 0.00028 23.4 2.3 16 54-69 119-134 (137)
42 1co6_A Protein (cytochrome C2) 54.5 7 0.00024 22.5 1.9 17 53-69 82-99 (107)
43 1f1c_A Cytochrome C549; dimeri 53.8 5.9 0.0002 23.2 1.5 16 54-69 104-119 (129)
44 4ham_A LMO2241 protein; struct 53.7 33 0.0011 21.0 5.0 35 29-65 86-120 (134)
45 1mz4_A Cytochrome C550; PSII a 53.5 6.1 0.00021 23.9 1.6 15 54-68 106-120 (137)
46 1m70_A Cytochrome C4; electron 52.6 8.9 0.0003 23.8 2.3 16 54-69 173-188 (190)
47 1hro_A Cytochrome C2; electron 51.8 8.5 0.00029 22.0 1.9 17 53-69 87-104 (106)
48 3c2c_A Cytochrome C2; electron 51.0 8.7 0.0003 22.3 1.9 15 55-69 95-110 (112)
49 1h32_B Cytochrome C, SOXX; ele 50.5 11 0.00036 22.8 2.3 16 54-69 120-135 (138)
50 3abq_B Ethanolamine ammonia-ly 49.0 4.3 0.00015 30.7 0.4 37 4-40 63-109 (306)
51 2npt_A Dual specificity mitoge 46.4 9.3 0.00032 25.1 1.7 12 56-67 72-83 (106)
52 1w5c_T Cytochrome C-550; photo 46.3 9 0.00031 24.0 1.6 16 54-69 132-147 (163)
53 4b4t_X 26S proteasome regulato 46.1 26 0.00089 23.6 3.9 44 5-59 96-139 (156)
54 1h1o_A Cytochrome C-552; elect 45.8 9.4 0.00032 23.6 1.6 17 53-69 166-182 (183)
55 1jdl_A C552, cytochrome C2, IS 45.8 9.5 0.00033 22.3 1.5 15 55-69 102-117 (121)
56 3dp5_A OMCF, cytochrome C fami 45.7 15 0.00052 21.2 2.4 14 55-68 82-95 (99)
57 1go3_F DNA-directed RNA polyme 45.6 12 0.0004 23.5 2.0 12 57-68 93-104 (107)
58 3ogn_A Odorant-binding protein 44.9 33 0.0011 20.5 4.0 41 11-65 1-41 (124)
59 1qn2_A Cytochrome CH; electron 44.2 8.9 0.0003 21.8 1.2 16 54-69 82-98 (100)
60 1k4u_P Phagocyte NADPH oxidase 43.9 11 0.00038 20.1 1.4 10 27-36 9-18 (32)
61 2af7_A Gamma-carboxymuconolact 43.0 43 0.0015 20.3 4.3 38 29-66 53-96 (125)
62 3ot2_A Uncharacterized protein 42.3 8.3 0.00028 24.6 0.9 11 7-17 136-146 (187)
63 1i8o_A Cytochrome C2; electron 41.6 13 0.00046 21.9 1.8 15 55-69 97-112 (114)
64 1wdj_A Hypothetical protein TT 41.1 8.9 0.0003 24.3 0.9 11 7-17 141-151 (187)
65 3ih6_A Putative zinc protease; 41.1 31 0.0011 21.1 3.5 32 34-67 97-128 (197)
66 2vhd_A Cytochrome C551 peroxid 40.7 40 0.0014 24.3 4.4 37 25-69 262-298 (323)
67 4gsl_A Ubiquitin-like modifier 38.3 8.8 0.0003 31.0 0.7 14 4-17 136-149 (615)
68 2gc4_D Cytochrome C-L; electro 37.8 15 0.00051 22.5 1.6 15 55-69 108-122 (147)
69 2igi_A Oligoribonuclease; RNAs 37.6 4 0.00014 25.7 -1.1 38 6-47 42-94 (180)
70 1iqc_A DI-heme peroxidase; pro 36.3 53 0.0018 23.4 4.5 37 25-69 245-281 (308)
71 1p8c_A Conserved hypothetical 35.4 81 0.0028 20.1 4.9 37 29-65 65-107 (145)
72 1zzh_A Cytochrome C peroxidase 35.0 39 0.0013 24.4 3.7 38 24-69 264-301 (328)
73 3vrd_A FCCA subunit, flavocyto 34.3 12 0.00041 23.9 0.7 15 55-69 158-172 (174)
74 4h0c_A Phospholipase/carboxyle 34.2 24 0.00082 22.5 2.2 17 52-68 193-209 (210)
75 2ahq_A Sigma-54, RNA polymeras 34.1 61 0.0021 19.4 3.9 25 41-65 21-48 (76)
76 3o5c_A Cytochrome C551 peroxid 33.9 56 0.0019 23.9 4.4 41 21-69 249-289 (320)
77 2qww_A Transcriptional regulat 33.8 31 0.0011 20.3 2.5 24 41-67 120-143 (154)
78 3oa8_B SOXX; cytochrome, sulfu 33.4 28 0.00094 24.1 2.5 15 55-69 187-201 (208)
79 3bey_A Conserved protein O2701 33.1 68 0.0023 18.1 4.1 38 29-66 34-77 (96)
80 2zoo_A Probable nitrite reduct 32.6 27 0.00091 25.2 2.4 20 50-69 404-423 (442)
81 2qeu_A Putative carboxymuconol 32.0 33 0.0011 21.4 2.5 37 29-65 65-107 (141)
82 3hq9_A Cytochrome C551 peroxid 30.8 37 0.0013 25.2 3.0 41 21-69 280-320 (345)
83 2dk8_A DNA-directed RNA polyme 30.8 51 0.0017 20.1 3.2 27 33-62 11-37 (81)
84 3vh1_A Ubiquitin-like modifier 30.1 14 0.0005 29.5 0.7 13 5-17 138-150 (598)
85 1e29_A Cytochrome C549; electr 29.6 21 0.00073 21.9 1.3 15 54-68 106-120 (135)
86 2xts_B Cytochrome; oxidoreduct 28.7 24 0.00083 23.6 1.6 17 53-69 103-119 (205)
87 4aik_A Transcriptional regulat 28.5 1E+02 0.0035 18.7 5.2 47 11-67 80-130 (151)
88 2d0w_A Cytochrome CL; electron 28.1 29 0.00099 22.1 1.8 14 55-68 110-123 (170)
89 2p1j_A POLIII, DNA polymerase 27.8 17 0.0006 23.1 0.7 30 5-35 46-83 (186)
90 3hdi_A Processing protease; CA 27.7 1.2E+02 0.004 20.6 4.8 33 33-67 306-338 (421)
91 3gwb_A Peptidase M16 inactive 27.6 84 0.0029 21.2 4.1 33 33-67 322-354 (434)
92 2c1v_A DI-HAEM cytochrome C pe 26.7 1.1E+02 0.0038 22.2 4.9 37 25-69 276-312 (338)
93 2lat_A Dolichyl-diphosphooligo 26.7 34 0.0012 18.5 1.6 13 55-67 2-14 (37)
94 3m97_X Cytochrome C-552, cytoc 26.4 37 0.0013 21.8 2.0 17 53-69 121-138 (140)
95 1wgl_A TOLL-interacting protei 26.4 94 0.0032 17.5 4.3 40 27-66 6-49 (59)
96 3eoq_A Putative zinc protease; 25.9 76 0.0026 21.5 3.7 33 33-67 306-338 (406)
97 2ou3_A Tellurite resistance pr 25.5 1.1E+02 0.0038 19.2 4.2 21 47-67 38-58 (161)
98 2r2y_A Protein ADRM1; proteaso 25.3 61 0.0021 21.9 3.1 10 5-14 107-116 (153)
99 2c8s_A Cytochrome C-L; HAEM, h 24.8 34 0.0012 22.0 1.6 14 55-68 116-129 (172)
100 2c35_A Human RPB4, DNA-directe 24.8 1.3E+02 0.0043 19.7 4.5 15 54-68 131-145 (152)
101 1l2l_A ADP-dependent glucokina 24.6 29 0.001 26.8 1.5 16 52-67 291-306 (457)
102 3tb5_A Methionine aminopeptida 24.1 1.6E+02 0.0055 19.5 5.2 35 30-66 6-46 (264)
103 2gui_A DNA polymerase III epsi 23.9 29 0.001 21.9 1.2 29 6-35 50-86 (194)
104 1gkm_A Histidase, HAL, histidi 23.3 1.3E+02 0.0045 23.6 5.0 34 32-67 93-126 (507)
105 2qve_A Tyrosine aminomutase; M 23.0 1.3E+02 0.0045 23.7 5.0 34 32-67 92-125 (526)
106 3hzs_A Monofunctional glycosyl 22.8 1.8E+02 0.006 20.2 5.1 46 11-66 162-207 (209)
107 1vke_A Carboxymuconolactone de 22.7 1.4E+02 0.0046 18.8 4.2 37 29-65 55-97 (133)
108 1pby_A Quinohemoprotein amine 22.6 90 0.0031 24.9 4.0 27 42-68 37-64 (489)
109 1t1d_A Protein (potassium chan 22.4 36 0.0012 20.7 1.4 13 57-69 50-62 (100)
110 2o6y_A Putative histidine ammo 22.3 1.4E+02 0.0048 23.5 5.0 34 32-67 100-133 (521)
111 3r1f_A ESX-1 secretion-associa 22.1 50 0.0017 20.7 2.0 22 46-67 103-124 (135)
112 1y2m_A Phenylalanine ammonia-l 22.0 1.5E+02 0.0051 24.5 5.2 37 29-67 159-195 (716)
113 2ve7_A Kinetochore protein HEC 22.0 42 0.0014 24.2 1.8 41 19-65 34-78 (315)
114 1wlj_A Interferon stimulated g 21.8 22 0.00074 22.8 0.3 36 7-46 39-82 (189)
115 1dul_A Signal recognition part 21.7 35 0.0012 20.2 1.2 20 47-66 39-58 (69)
116 3ppu_A Glutathione-S-transfera 21.2 17 0.00058 26.3 -0.4 23 2-24 321-343 (352)
117 2yii_A Phenylalanine ammonia-l 21.0 1.6E+02 0.0055 24.3 5.2 37 29-67 143-179 (705)
118 2jxu_A TERB, KP-TERB; tellurit 21.0 1.4E+02 0.0048 18.2 3.9 27 42-68 35-61 (153)
119 1gc5_A ADP-dependent glucokina 21.0 38 0.0013 26.3 1.5 16 52-67 301-316 (467)
120 2nyn_A Phenylalanine/histidine 20.9 1.5E+02 0.0052 23.7 5.0 34 32-67 118-151 (565)
121 3rh3_A Uncharacterized DUF3829 20.9 54 0.0018 24.3 2.3 41 17-67 5-45 (264)
122 4ayb_F DNA-directed RNA polyme 20.7 46 0.0016 20.9 1.6 14 55-68 95-108 (113)
123 1yyb_A Programmed cell death p 20.2 37 0.0013 16.8 0.9 10 54-63 1-10 (27)
124 3unv_A ADMH; MIO, lyase; HET: 20.1 1.5E+02 0.0052 23.6 4.8 34 32-67 118-151 (547)
125 2qzi_A Uncharacterized protein 20.0 48 0.0016 21.5 1.6 19 50-68 54-72 (103)
No 1
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=86.55 E-value=1 Score=24.40 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=15.9
Q ss_pred hCCCCCChHHHHHHHHhhhC
Q psy10258 50 MLGPGVKEDELQSILNYLTT 69 (69)
Q Consensus 50 ~~~~g~~ddEl~aiLNyL~T 69 (69)
|.....+|+|+.+|..||.+
T Consensus 50 Mp~~~ls~~ei~~l~~yl~~ 69 (71)
T 1c75_A 50 MPGGIAKGAEAEAVAAWLAE 69 (71)
T ss_dssp BCSCSSCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHh
Confidence 44455789999999999974
No 2
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=86.39 E-value=2 Score=23.52 Aligned_cols=44 Identities=11% Similarity=0.148 Sum_probs=25.9
Q ss_pred CCCCchHHHHHH--------HHHHHHHHHHH--hhCCC--CCChHHHHHHHHhhhC
Q psy10258 26 GPRPAQKDILAI--------RAYILLFLKQL--MMLGP--GVKEDELQSILNYLTT 69 (69)
Q Consensus 26 g~rp~~~ei~si--------Ra~iL~flkqL--i~~~~--g~~ddEl~aiLNyL~T 69 (69)
+|..+...+..- ++.+..+++.= .|... ..+|+|+.+|.+||.+
T Consensus 28 ~P~L~~~~~~~~l~~~~~~~~~~l~~~i~~g~~~Mp~~~~~ls~~ei~~l~~yl~~ 83 (89)
T 1f1f_A 28 NKTLSKSDLAKYLKGFDDDAVAAVAYQVTNGKNAMPGFNGRLSPLQIEDVAAYVVD 83 (89)
T ss_dssp TCCSSHHHHHHHSTTTTTCHHHHHHHHHHHCBTTBCCCTTTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhhccCccCHHHHHHHHHcCCCCCCccccCCCHHHHHHHHHHHHH
Confidence 455555544432 44444444431 24433 3789999999999863
No 3
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}
Probab=79.24 E-value=0.99 Score=25.77 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=16.8
Q ss_pred hhCCCCCChHHHHHHHHhhhC
Q psy10258 49 MMLGPGVKEDELQSILNYLTT 69 (69)
Q Consensus 49 i~~~~g~~ddEl~aiLNyL~T 69 (69)
.|...+++|+|+.+|.+||.+
T Consensus 75 ~Mp~~~Ls~~ei~~l~~yl~~ 95 (110)
T 2l4d_A 75 AMPNMRLGDAEVSALISYLEE 95 (110)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHH
Confidence 355566899999999999963
No 4
>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*
Probab=79.21 E-value=1.6 Score=25.33 Aligned_cols=25 Identities=20% Similarity=0.505 Sum_probs=18.9
Q ss_pred HHHHh-hCCCCCChHHHHHHHHhhhC
Q psy10258 45 LKQLM-MLGPGVKEDELQSILNYLTT 69 (69)
Q Consensus 45 lkqLi-~~~~g~~ddEl~aiLNyL~T 69 (69)
+++.+ .-+..+.|+|.++|++||.+
T Consensus 54 v~~M~~~~g~~ls~~e~~~I~~YL~~ 79 (81)
T 2blf_B 54 VQKMIKVYHAPVDEADAKAIADYLAK 79 (81)
T ss_dssp HHHHHHTSCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 35655 23566899999999999963
No 5
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=79.10 E-value=1.6 Score=23.79 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=14.0
Q ss_pred CCChHHHHHHHHhhhC
Q psy10258 54 GVKEDELQSILNYLTT 69 (69)
Q Consensus 54 g~~ddEl~aiLNyL~T 69 (69)
..+|+|+.+|.+||.+
T Consensus 65 ~ls~~ei~~l~~yl~~ 80 (82)
T 2exv_A 65 AVSDDEAQTLAKWVLS 80 (82)
T ss_dssp CCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4689999999999975
No 6
>3a9f_A Cytochrome C; alpha helix, mono heme, electron transport; HET: HEC P33 PGE PG4; 1.30A {Chlorobaculum tepidum}
Probab=78.45 E-value=2.6 Score=25.94 Aligned_cols=25 Identities=24% Similarity=0.491 Sum_probs=20.2
Q ss_pred HHHHHhh-CCCCCChHHHHHHHHhhh
Q psy10258 44 FLKQLMM-LGPGVKEDELQSILNYLT 68 (69)
Q Consensus 44 flkqLi~-~~~g~~ddEl~aiLNyL~ 68 (69)
.+++.+. .+.+++++|..+|++||+
T Consensus 64 iv~~M~~mpg~~Is~eda~~Iv~YLa 89 (92)
T 3a9f_A 64 IVKRMQGFPGSGISDDDAKTIGIWLH 89 (92)
T ss_dssp HHHHHHHSTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 4555564 478899999999999996
No 7
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=77.65 E-value=1.2 Score=24.46 Aligned_cols=16 Identities=13% Similarity=0.414 Sum_probs=13.8
Q ss_pred CCChHHHHHHHHhhhC
Q psy10258 54 GVKEDELQSILNYLTT 69 (69)
Q Consensus 54 g~~ddEl~aiLNyL~T 69 (69)
..+|+|+.+|.+||.+
T Consensus 63 ~Lsd~ei~~l~~yl~~ 78 (80)
T 1ayg_A 63 NVTDAEAKQLAQWILS 78 (80)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4689999999999863
No 8
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=75.89 E-value=1.7 Score=23.58 Aligned_cols=16 Identities=19% Similarity=0.688 Sum_probs=14.2
Q ss_pred CCChHHHHHHHHhhhC
Q psy10258 54 GVKEDELQSILNYLTT 69 (69)
Q Consensus 54 g~~ddEl~aiLNyL~T 69 (69)
.++|+|+.+|.+||.+
T Consensus 70 ~ls~~ei~~l~~yl~s 85 (87)
T 2zxy_A 70 GLSDAELKALADFILS 85 (87)
T ss_dssp GCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 5789999999999975
No 9
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=74.09 E-value=6.8 Score=21.06 Aligned_cols=16 Identities=13% Similarity=0.493 Sum_probs=13.8
Q ss_pred CCChHHHHHHHHhhhC
Q psy10258 54 GVKEDELQSILNYLTT 69 (69)
Q Consensus 54 g~~ddEl~aiLNyL~T 69 (69)
..+|+|+.+|..||.+
T Consensus 65 ~ls~~ei~~l~~yl~~ 80 (86)
T 3ph2_B 65 RLTDDQIAAVAAYVLD 80 (86)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4689999999999863
No 10
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=73.74 E-value=2.9 Score=22.83 Aligned_cols=16 Identities=13% Similarity=0.466 Sum_probs=13.8
Q ss_pred CCChHHHHHHHHhhhC
Q psy10258 54 GVKEDELQSILNYLTT 69 (69)
Q Consensus 54 g~~ddEl~aiLNyL~T 69 (69)
..+|+|+.+|.+||.+
T Consensus 64 ~Ls~~ei~~l~~yl~~ 79 (81)
T 1a56_A 64 NVSDADAKALADWILT 79 (81)
T ss_dssp SSSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 5689999999999863
No 11
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=73.52 E-value=2.8 Score=22.83 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=14.0
Q ss_pred CCChHHHHHHHHhhhC
Q psy10258 54 GVKEDELQSILNYLTT 69 (69)
Q Consensus 54 g~~ddEl~aiLNyL~T 69 (69)
..+|+|+.+|..||.+
T Consensus 62 ~Ls~~ei~~l~~yl~~ 77 (79)
T 2d0s_A 62 QVAEADIEKIVRWVLT 77 (79)
T ss_dssp TSCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4689999999999974
No 12
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=72.79 E-value=1.9 Score=23.36 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=13.8
Q ss_pred CCChHHHHHHHHhhhC
Q psy10258 54 GVKEDELQSILNYLTT 69 (69)
Q Consensus 54 g~~ddEl~aiLNyL~T 69 (69)
..+|+|+.+|.+||.+
T Consensus 65 ~ls~~ei~~l~~yl~~ 80 (82)
T 1cch_A 65 PVTEEEAKILAEWVLS 80 (82)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4689999999999864
No 13
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=71.97 E-value=10 Score=20.76 Aligned_cols=16 Identities=25% Similarity=0.578 Sum_probs=13.8
Q ss_pred CCChHHHHHHHHhhhC
Q psy10258 54 GVKEDELQSILNYLTT 69 (69)
Q Consensus 54 g~~ddEl~aiLNyL~T 69 (69)
..+|+|+.+|.+||.+
T Consensus 66 ~ls~~ei~~l~~yl~~ 81 (90)
T 1cyi_A 66 RLSEEEIQAVAEYVFK 81 (90)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 3689999999999863
No 14
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=71.34 E-value=2.2 Score=23.45 Aligned_cols=16 Identities=13% Similarity=0.586 Sum_probs=14.0
Q ss_pred CCChHHHHHHHHhhhC
Q psy10258 54 GVKEDELQSILNYLTT 69 (69)
Q Consensus 54 g~~ddEl~aiLNyL~T 69 (69)
..+|+|+.+|.+||.+
T Consensus 63 ~Ls~~ei~~l~~Yl~s 78 (79)
T 1c53_A 63 RYSDEEMKAMADYMSK 78 (79)
T ss_pred hCCHHHHHHHHHHHHh
Confidence 4689999999999964
No 15
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=71.02 E-value=2.8 Score=23.33 Aligned_cols=16 Identities=0% Similarity=0.486 Sum_probs=14.0
Q ss_pred CCChHHHHHHHHhhhC
Q psy10258 54 GVKEDELQSILNYLTT 69 (69)
Q Consensus 54 g~~ddEl~aiLNyL~T 69 (69)
..+|+|+.+|.+|+.+
T Consensus 64 ~Lsd~ei~~l~~Yi~~ 79 (81)
T 1kx2_A 64 DCTDEDYKAAIEFMSK 79 (81)
T ss_dssp SCCHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4689999999999974
No 16
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=70.72 E-value=5.5 Score=21.38 Aligned_cols=16 Identities=13% Similarity=0.497 Sum_probs=13.9
Q ss_pred CCChHHHHHHHHhhhC
Q psy10258 54 GVKEDELQSILNYLTT 69 (69)
Q Consensus 54 g~~ddEl~aiLNyL~T 69 (69)
..+|+|+.+|.+||.+
T Consensus 64 ~ls~~ei~~l~~yl~~ 79 (85)
T 1gdv_A 64 RLVDEDIEDAANYVLS 79 (85)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5789999999999863
No 17
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=68.25 E-value=2.4 Score=23.57 Aligned_cols=16 Identities=6% Similarity=0.463 Sum_probs=13.9
Q ss_pred CCChHHHHHHHHhhhC
Q psy10258 54 GVKEDELQSILNYLTT 69 (69)
Q Consensus 54 g~~ddEl~aiLNyL~T 69 (69)
..+|+|+.+|.+||.+
T Consensus 66 ~ls~~ei~~l~~yl~~ 81 (87)
T 1cno_A 66 ALSDADIANLAAYYAS 81 (87)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHh
Confidence 4789999999999863
No 18
>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus}
Probab=67.46 E-value=2.8 Score=24.57 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=16.1
Q ss_pred hCCCCCChHHHHHHHHhhhC
Q psy10258 50 MLGPGVKEDELQSILNYLTT 69 (69)
Q Consensus 50 ~~~~g~~ddEl~aiLNyL~T 69 (69)
|....++|+|+.+|..||.+
T Consensus 100 Mp~~~Ls~~ei~~l~~Yl~~ 119 (124)
T 3cp5_A 100 MTDMALSEEQARAILEYLRQ 119 (124)
T ss_dssp CCCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 44456799999999999863
No 19
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=67.40 E-value=2.7 Score=23.08 Aligned_cols=16 Identities=19% Similarity=0.526 Sum_probs=13.9
Q ss_pred CCChHHHHHHHHhhhC
Q psy10258 54 GVKEDELQSILNYLTT 69 (69)
Q Consensus 54 g~~ddEl~aiLNyL~T 69 (69)
..+|+|+.+|.+||.+
T Consensus 67 ~ls~~ei~~l~~yl~~ 82 (89)
T 1c6r_A 67 TLDDDEIAAVAAYVYD 82 (89)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4789999999999963
No 20
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=67.39 E-value=3.3 Score=23.04 Aligned_cols=16 Identities=13% Similarity=0.551 Sum_probs=13.9
Q ss_pred CCChHHHHHHHHhhhC
Q psy10258 54 GVKEDELQSILNYLTT 69 (69)
Q Consensus 54 g~~ddEl~aiLNyL~T 69 (69)
..+|+|+.+|..||.+
T Consensus 82 ~ls~~ei~~l~~yl~s 97 (99)
T 1w2l_A 82 SLSEREVAALIEFIKQ 97 (99)
T ss_dssp GCCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHH
Confidence 3689999999999975
No 21
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=66.73 E-value=3.5 Score=23.43 Aligned_cols=15 Identities=20% Similarity=0.472 Sum_probs=13.5
Q ss_pred CChHHHHHHHHhhhC
Q psy10258 55 VKEDELQSILNYLTT 69 (69)
Q Consensus 55 ~~ddEl~aiLNyL~T 69 (69)
.+|+|+.+|.+|+.+
T Consensus 68 Lsd~ei~~v~~yi~~ 82 (83)
T 1cc5_A 68 CSDDELKAAIGKMSG 82 (83)
T ss_dssp CCHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHh
Confidence 689999999999964
No 22
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=66.51 E-value=3.9 Score=22.55 Aligned_cols=16 Identities=13% Similarity=0.453 Sum_probs=13.9
Q ss_pred CCChHHHHHHHHhhhC
Q psy10258 54 GVKEDELQSILNYLTT 69 (69)
Q Consensus 54 g~~ddEl~aiLNyL~T 69 (69)
..+|+|+.+|.+|+.+
T Consensus 61 ~Lsd~ei~~l~~yi~~ 76 (78)
T 1gks_A 61 RADREDLVKAIEYMLS 76 (78)
T ss_dssp TBCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4689999999999964
No 23
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=65.93 E-value=2.9 Score=23.19 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=13.8
Q ss_pred CCChHHHHHHHHhhhC
Q psy10258 54 GVKEDELQSILNYLTT 69 (69)
Q Consensus 54 g~~ddEl~aiLNyL~T 69 (69)
..+|+|+++|.+||.+
T Consensus 57 ~ls~~ei~~l~~yl~~ 72 (80)
T 1wve_C 57 YVDDESLTQVAEYLSS 72 (80)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4689999999999863
No 24
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=65.50 E-value=2.9 Score=22.76 Aligned_cols=16 Identities=6% Similarity=0.466 Sum_probs=13.8
Q ss_pred CCChHHHHHHHHhhhC
Q psy10258 54 GVKEDELQSILNYLTT 69 (69)
Q Consensus 54 g~~ddEl~aiLNyL~T 69 (69)
..+|+|+.+|..||.+
T Consensus 71 ~ls~~ei~~l~~yl~~ 86 (93)
T 3dr0_A 71 RLSDADIANVAAYIAD 86 (93)
T ss_dssp TBCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4689999999999863
No 25
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=64.64 E-value=3.7 Score=22.35 Aligned_cols=15 Identities=13% Similarity=0.554 Sum_probs=13.4
Q ss_pred CChHHHHHHHHhhhC
Q psy10258 55 VKEDELQSILNYLTT 69 (69)
Q Consensus 55 ~~ddEl~aiLNyL~T 69 (69)
.+|+|+.+|..||.+
T Consensus 67 ls~~ei~~l~~yl~~ 81 (88)
T 3dmi_A 67 LSDEEIANVAAYVLA 81 (88)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 789999999999863
No 26
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*
Probab=63.82 E-value=3.3 Score=23.40 Aligned_cols=16 Identities=6% Similarity=0.434 Sum_probs=13.8
Q ss_pred CCChHHHHHHHHhhhC
Q psy10258 54 GVKEDELQSILNYLTT 69 (69)
Q Consensus 54 g~~ddEl~aiLNyL~T 69 (69)
..+|+|+.+|.+||.+
T Consensus 78 ~ls~~ei~~l~~yl~~ 93 (105)
T 2ce0_A 78 RLQDEEIKLLAEFVKF 93 (105)
T ss_dssp CBCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4689999999999863
No 27
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=63.66 E-value=3.2 Score=22.88 Aligned_cols=16 Identities=19% Similarity=0.451 Sum_probs=14.0
Q ss_pred CCChHHHHHHHHhhhC
Q psy10258 54 GVKEDELQSILNYLTT 69 (69)
Q Consensus 54 g~~ddEl~aiLNyL~T 69 (69)
..+|+|+.+|.+||.+
T Consensus 69 ~ls~~ei~~l~~yl~~ 84 (87)
T 2zon_G 69 AADEATLRAAVAYMMD 84 (87)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5789999999999863
No 28
>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}
Probab=62.85 E-value=9 Score=23.16 Aligned_cols=31 Identities=13% Similarity=0.318 Sum_probs=21.0
Q ss_pred HHHHHHHHHHH--------hhCCCCCChHHHHHHHHhhh
Q psy10258 38 RAYILLFLKQL--------MMLGPGVKEDELQSILNYLT 68 (69)
Q Consensus 38 Ra~iL~flkqL--------i~~~~g~~ddEl~aiLNyL~ 68 (69)
+..+-.|++.- .|...+.+|+|+.+|.+||.
T Consensus 92 ~~~l~~~i~~~~~~~~g~~~Mp~~~Ls~~ei~~l~ayl~ 130 (146)
T 3o0r_C 92 NTFLQAWMKIQPLNVPGRRAMPQFHLSEGQVDDLAEFLK 130 (146)
T ss_dssp HHHHHHHHHHCCCCCTTSCCCCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccCCCCCCCCCCCCcCHHHHHHHHHHHH
Confidence 45555566541 23344578999999999984
No 29
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=62.73 E-value=3.7 Score=22.75 Aligned_cols=16 Identities=25% Similarity=0.634 Sum_probs=13.8
Q ss_pred CCChHHHHHHHHhhhC
Q psy10258 54 GVKEDELQSILNYLTT 69 (69)
Q Consensus 54 g~~ddEl~aiLNyL~T 69 (69)
..+|+|+.+|.+||.+
T Consensus 69 ~ls~~ei~~l~~yl~~ 84 (91)
T 1ls9_A 69 RLDEDDIEAVSNYVYD 84 (91)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHH
Confidence 4689999999999863
No 30
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=62.15 E-value=3.3 Score=22.72 Aligned_cols=15 Identities=13% Similarity=0.186 Sum_probs=13.4
Q ss_pred CCChHHHHHHHHhhh
Q psy10258 54 GVKEDELQSILNYLT 68 (69)
Q Consensus 54 g~~ddEl~aiLNyL~ 68 (69)
..+|+|+.+|.+||.
T Consensus 67 ~ls~~ei~~l~~yi~ 81 (85)
T 3cu4_A 67 MIPPADALKIGEYVV 81 (85)
T ss_dssp TSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 468999999999986
No 31
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=61.15 E-value=3.9 Score=23.21 Aligned_cols=16 Identities=13% Similarity=0.484 Sum_probs=13.9
Q ss_pred CCChHHHHHHHHhhhC
Q psy10258 54 GVKEDELQSILNYLTT 69 (69)
Q Consensus 54 g~~ddEl~aiLNyL~T 69 (69)
..+|+|+.+|.+||.+
T Consensus 86 ~ls~~ei~~l~~yl~~ 101 (103)
T 2zzs_A 86 LLSDDDIANLAAYYSS 101 (103)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHh
Confidence 4789999999999863
No 32
>1i54_A Cytochrome C; zinc-porphyrin, mixed-metal, electron transport; HET: HEM ZNH; 1.50A {Thunnus thynnus} SCOP: a.3.1.1 PDB: 1i55_A* 1lfm_A* 5cyt_R* 3cyt_O* 1cyc_A* 2aiu_A* 2b4z_A* 2ybb_Y* 1akk_A* 1fi7_A* 1fi9_A* 1giw_A* 1i5t_A* 1lc1_A* 1lc2_A* 1m60_A* 1ocd_A* 1u75_B* 2frc_A* 2giw_A* ...
Probab=60.53 E-value=4.2 Score=23.00 Aligned_cols=17 Identities=35% Similarity=0.722 Sum_probs=14.0
Q ss_pred CCCC-hHHHHHHHHhhhC
Q psy10258 53 PGVK-EDELQSILNYLTT 69 (69)
Q Consensus 53 ~g~~-ddEl~aiLNyL~T 69 (69)
.++. |+|+.+|..||.+
T Consensus 83 ~~l~~~~ei~~l~aYl~s 100 (103)
T 1i54_A 83 AGIKKKGERQDLVAYLKS 100 (103)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 4565 9999999999964
No 33
>3t7h_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, ligase; 1.60A {Saccharomyces cerevisiae} PDB: 3t7f_A 3t7g_A 3ruj_A 4gsj_A*
Probab=59.36 E-value=2.6 Score=30.52 Aligned_cols=13 Identities=38% Similarity=1.139 Sum_probs=10.6
Q ss_pred ceeeeeecCCCCC
Q psy10258 5 KFYYWVVNPRLKT 17 (69)
Q Consensus 5 K~YYWvv~Pr~~S 17 (69)
|||||+.-|.-.+
T Consensus 137 kFyYWfafPal~~ 149 (291)
T 3t7h_A 137 RFYYWLGVPCFQR 149 (291)
T ss_dssp EEEEEEEEEEEES
T ss_pred EEEEEEEEccccC
Confidence 8999999997544
No 34
>2w9k_A Cytochrome C, cytochrome C555; electron transport, intermembrane space, metal-binding, thioether bond, respiratory chain, trypanosome; HET: M3L HEC; 1.55A {Crithidia fasciculata} PDB: 2yk3_A* 4dy9_A*
Probab=58.51 E-value=5.8 Score=23.14 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=13.2
Q ss_pred CChHHHHHHHHhhhC
Q psy10258 55 VKEDELQSILNYLTT 69 (69)
Q Consensus 55 ~~ddEl~aiLNyL~T 69 (69)
.+|+|+.+|.+||.+
T Consensus 97 ls~~ei~~l~aYl~s 111 (114)
T 2w9k_A 97 KKPQERADVIAYLET 111 (114)
T ss_dssp CCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHH
Confidence 479999999999975
No 35
>3vx6_A E1; 2.60A {Kluyveromyces marxianus} PDB: 3vx7_A
Probab=58.38 E-value=2.8 Score=30.44 Aligned_cols=13 Identities=46% Similarity=1.364 Sum_probs=10.7
Q ss_pred ceeeeeecCCCCC
Q psy10258 5 KFYYWVVNPRLKT 17 (69)
Q Consensus 5 K~YYWvv~Pr~~S 17 (69)
|||||+.-|.-.+
T Consensus 135 kFyYWfafPal~~ 147 (283)
T 3vx6_A 135 KFYYWICMPSFQS 147 (283)
T ss_dssp EEEEEEEEEECCB
T ss_pred EEEEEEEeccccC
Confidence 8999999997544
No 36
>3vx8_D Ubiquitin-like modifier-activating enzyme ATG7; E1-E2 complex, ligase; 3.11A {Arabidopsis thaliana}
Probab=58.20 E-value=2.8 Score=30.72 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=24.7
Q ss_pred ceeeeeecCCCCCC--CCCCCCC--CCCCchHHHHHHHHHHHHHHHH
Q psy10258 5 KFYYWVVNPRLKTG--VIPKGLD--GPRPAQKDILAIRAYILLFLKQ 47 (69)
Q Consensus 5 K~YYWvv~Pr~~Sg--~~pkgl~--g~rp~~~ei~siRa~iL~flkq 47 (69)
|||||+.-|.-.+. +...+-. ....+.+++.++...+-.+..+
T Consensus 147 kFyYWfafPal~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (323)
T 3vx8_D 147 SFRYWFAFPAFVLDPPVSLIELKPASEYFSSEEAESVSAACNDWRDS 193 (323)
T ss_dssp EEEEEEEEEEECCSSCCEEEEEEEHHHHSCHHHHHHHHHHHHHHHHS
T ss_pred eEEEEEEecCcCCCccceeecccccccccCHHHHHHHHHHHHHHHhc
Confidence 89999999975433 3221100 0123456777777777665443
No 37
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=56.52 E-value=6.9 Score=25.05 Aligned_cols=41 Identities=29% Similarity=0.432 Sum_probs=27.4
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhCC--C-CCC-hHHHHHHHH
Q psy10258 19 VIPKGLDGPRPAQKDILAIRAYILLFLKQLMMLG--P-GVK-EDELQSILN 65 (69)
Q Consensus 19 ~~pkgl~g~rp~~~ei~siRa~iL~flkqLi~~~--~-g~~-ddEl~aiLN 65 (69)
++++.+ ..|+++|++.|=.|| -+.|-.. - +.+ |||+-.+|-
T Consensus 36 is~k~L--~~Pt~kdF~~if~fL----~~~idp~~~~~~~~~eeev~~~lK 80 (120)
T 2igp_A 36 VSMKSL--QAPSVKDFLKIFTFL----YGFLCPSYELPDTKFEEEVPRIFK 80 (120)
T ss_dssp CCTTTT--SSCCHHHHHHHHHHH----HTTTCTTCCCCCTTHHHHHHHHHH
T ss_pred CCcccc--CCCCHHHHHHHHHHH----HHhcCCCCccCCCChHHHHHHHHH
Confidence 577877 689999999765544 4555322 2 223 999888764
No 38
>1ccr_A Cytochrome C; electron transport(cytochrome); HET: M3L HEM; 1.50A {Oryza sativa} SCOP: a.3.1.1
Probab=56.05 E-value=5.5 Score=23.08 Aligned_cols=16 Identities=31% Similarity=0.667 Sum_probs=13.6
Q ss_pred CC-ChHHHHHHHHhhhC
Q psy10258 54 GV-KEDELQSILNYLTT 69 (69)
Q Consensus 54 g~-~ddEl~aiLNyL~T 69 (69)
+. +|+|+.+|..||.+
T Consensus 93 ~~ls~~ei~~l~aYl~~ 109 (112)
T 1ccr_A 93 GLXKPQERADLISYLKE 109 (112)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 45 89999999999964
No 39
>1ycc_A Cytochrome C; electron transport (cytochrome); HET: M3L HEM; 1.23A {Saccharomyces cerevisiae} SCOP: a.3.1.1 PDB: 1kyo_W* 3cx5_W* 2gb8_B* 2pcc_B* 2b12_B* 2jti_B* 2b11_B* 2b0z_B* 2bcn_B* 1u74_B* 2b10_B* 1yfc_A* 1yic_A* 1nmi_A* 2hv4_A* 2orl_A* 3tyi_A* 1crh_A* 2ycc_A* 1csw_A* ...
Probab=55.84 E-value=5.2 Score=22.97 Aligned_cols=17 Identities=29% Similarity=0.665 Sum_probs=14.1
Q ss_pred CCC-ChHHHHHHHHhhhC
Q psy10258 53 PGV-KEDELQSILNYLTT 69 (69)
Q Consensus 53 ~g~-~ddEl~aiLNyL~T 69 (69)
.++ +|+|+.+|..||.+
T Consensus 88 ~~l~s~~ei~~l~aYl~s 105 (108)
T 1ycc_A 88 GGLKKEKDRNDLITYLKK 105 (108)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 456 69999999999964
No 40
>1c52_A Cytochrome-C552; electron transport protein, MAD, thermostability; HET: HEM; 1.28A {Thermus thermophilus} SCOP: a.3.1.1 PDB: 1qyz_A* 1r0q_A* 2fwl_A* 1foc_A* 1dt1_A*
Probab=55.03 E-value=5.3 Score=24.20 Aligned_cols=16 Identities=31% Similarity=0.652 Sum_probs=13.9
Q ss_pred CCChHHHHHHHHhhhC
Q psy10258 54 GVKEDELQSILNYLTT 69 (69)
Q Consensus 54 g~~ddEl~aiLNyL~T 69 (69)
..+|+|+.+|.+||.+
T Consensus 74 ~Lsd~ei~~l~~Yl~~ 89 (131)
T 1c52_A 74 QLKDEEIAAVLNHIAT 89 (131)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4789999999999863
No 41
>2c1d_B SOXX; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus pantotrophus}
Probab=54.73 E-value=8.1 Score=23.36 Aligned_cols=16 Identities=13% Similarity=0.457 Sum_probs=14.2
Q ss_pred CCChHHHHHHHHhhhC
Q psy10258 54 GVKEDELQSILNYLTT 69 (69)
Q Consensus 54 g~~ddEl~aiLNyL~T 69 (69)
..+|+|+.+|..||.+
T Consensus 119 ~Ls~~ei~~l~aYl~s 134 (137)
T 2c1d_B 119 ILNAQQIEDVVAFLVT 134 (137)
T ss_dssp SSCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5789999999999975
No 42
>1co6_A Protein (cytochrome C2); electron transport(heme protein); HET: HEM; 1.60A {Blastochloris viridis} SCOP: a.3.1.1 PDB: 1cry_A* 1io3_A*
Probab=54.49 E-value=7 Score=22.51 Aligned_cols=17 Identities=24% Similarity=0.686 Sum_probs=14.2
Q ss_pred CCC-ChHHHHHHHHhhhC
Q psy10258 53 PGV-KEDELQSILNYLTT 69 (69)
Q Consensus 53 ~g~-~ddEl~aiLNyL~T 69 (69)
.++ +|+|+.+|..||.+
T Consensus 82 ~~l~s~~ei~~l~aYl~s 99 (107)
T 1co6_A 82 AGVKDEQKVSDLIAYIKQ 99 (107)
T ss_dssp CCCCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 345 69999999999975
No 43
>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1
Probab=53.83 E-value=5.9 Score=23.19 Aligned_cols=16 Identities=25% Similarity=0.586 Sum_probs=13.8
Q ss_pred CCChHHHHHHHHhhhC
Q psy10258 54 GVKEDELQSILNYLTT 69 (69)
Q Consensus 54 g~~ddEl~aiLNyL~T 69 (69)
.++|+|+.+|.+||.+
T Consensus 104 ~Ls~~ei~~l~~Yl~~ 119 (129)
T 1f1c_A 104 NISEDDLYNVAGYILL 119 (129)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5789999999999863
No 44
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=53.70 E-value=33 Score=20.95 Aligned_cols=35 Identities=17% Similarity=0.305 Sum_probs=26.6
Q ss_pred CchHHHHHHHHHHHHHHHHHhhCCCCCChHHHHHHHH
Q psy10258 29 PAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILN 65 (69)
Q Consensus 29 p~~~ei~siRa~iL~flkqLi~~~~g~~ddEl~aiLN 65 (69)
...+++..+|..+-.++.++.. .|++.+|++.++.
T Consensus 86 ~~~~~~~~~r~~l~~~~~~~~~--~~~~~eel~~l~~ 120 (134)
T 4ham_A 86 SSPKKLAETRTKLKETILDLVY--LGVNIEEIHKLAD 120 (134)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHH
Confidence 3567888889988877777664 4678889988864
No 45
>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*
Probab=53.53 E-value=6.1 Score=23.86 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=13.4
Q ss_pred CCChHHHHHHHHhhh
Q psy10258 54 GVKEDELQSILNYLT 68 (69)
Q Consensus 54 g~~ddEl~aiLNyL~ 68 (69)
..+|+|+.+|.+||.
T Consensus 106 ~Lsd~ei~alaaYl~ 120 (137)
T 1mz4_A 106 NLTEKDLVAIAGHIL 120 (137)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 478999999999986
No 46
>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*
Probab=52.61 E-value=8.9 Score=23.82 Aligned_cols=16 Identities=6% Similarity=0.451 Sum_probs=14.1
Q ss_pred CCChHHHHHHHHhhhC
Q psy10258 54 GVKEDELQSILNYLTT 69 (69)
Q Consensus 54 g~~ddEl~aiLNyL~T 69 (69)
..+|+|+.+|.+||.+
T Consensus 173 ~Ls~~ei~~l~~Yl~s 188 (190)
T 1m70_A 173 KLSNKDIEALSSYIQG 188 (190)
T ss_dssp TCCHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHh
Confidence 4689999999999975
No 47
>1hro_A Cytochrome C2; electron transport, photosynthesis, heme; HET: HEM; 2.20A {Rhodopila globiformis} SCOP: a.3.1.1
Probab=51.76 E-value=8.5 Score=22.03 Aligned_cols=17 Identities=35% Similarity=0.659 Sum_probs=13.9
Q ss_pred CCC-ChHHHHHHHHhhhC
Q psy10258 53 PGV-KEDELQSILNYLTT 69 (69)
Q Consensus 53 ~g~-~ddEl~aiLNyL~T 69 (69)
.++ +|+|+.+|..||.+
T Consensus 87 ~~~~~~~ei~~l~aYl~s 104 (106)
T 1hro_A 87 PGQPDPQKRADIIAYLET 104 (106)
T ss_dssp CCCCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 345 59999999999975
No 48
>3c2c_A Cytochrome C2; electron transport protein (cytochrome); HET: HEM; 1.68A {Rhodospirillum rubrum} SCOP: a.3.1.1 PDB: 2c2c_A*
Probab=51.02 E-value=8.7 Score=22.34 Aligned_cols=15 Identities=33% Similarity=0.851 Sum_probs=12.9
Q ss_pred CC-hHHHHHHHHhhhC
Q psy10258 55 VK-EDELQSILNYLTT 69 (69)
Q Consensus 55 ~~-ddEl~aiLNyL~T 69 (69)
+. |+|+.+|.+||.|
T Consensus 95 l~~~~di~~l~aYl~s 110 (112)
T 3c2c_A 95 LTKDDEIENVIAYLKT 110 (112)
T ss_dssp CCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHH
Confidence 55 7999999999975
No 49
>1h32_B Cytochrome C, SOXX; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.1 PDB: 1h31_B* 1h33_B* 2oz1_B*
Probab=50.51 E-value=11 Score=22.77 Aligned_cols=16 Identities=19% Similarity=0.468 Sum_probs=13.9
Q ss_pred CCChHHHHHHHHhhhC
Q psy10258 54 GVKEDELQSILNYLTT 69 (69)
Q Consensus 54 g~~ddEl~aiLNyL~T 69 (69)
..+|+|+.+|..||.+
T Consensus 120 ~Ls~~ei~~l~aYl~s 135 (138)
T 1h32_B 120 LMTAGQIEDVVAYLMT 135 (138)
T ss_dssp SSCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4589999999999975
No 50
>3abq_B Ethanolamine ammonia-lyase light chain; (beta/alpha)8 fold, cobalt, cobalamin; HET: B12; 2.05A {Escherichia coli} PDB: 3abo_B* 3abr_B* 3abs_B* 3any_B* 3ao0_B*
Probab=48.97 E-value=4.3 Score=30.70 Aligned_cols=37 Identities=30% Similarity=0.401 Sum_probs=31.5
Q ss_pred cceeeeeecCCCCCCC----------CCCCCCCCCCchHHHHHHHHH
Q psy10258 4 LKFYYWVVNPRLKTGV----------IPKGLDGPRPAQKDILAIRAY 40 (69)
Q Consensus 4 LK~YYWvv~Pr~~Sg~----------~pkgl~g~rp~~~ei~siRa~ 40 (69)
+|..++|-||.++..| +--|+.|+||.+++++..|+.
T Consensus 63 ~~~~~~v~~p~~~~~w~~Lr~~T~ARIglGRaG~s~pT~~~L~F~~d 109 (306)
T 3abq_B 63 AKAWIGVENPHRADVLTELRRSTVARVCTGRAGPRPRTQALLRFLAD 109 (306)
T ss_dssp HHHCCCCSSCSCHHHHHHHHHTCSSCCSCCCBTTBCCHHHHHHHHHH
T ss_pred hhhhcCCCCcCCHHHHHHHHhcCcceEeecCcCCCCCcHHHHhhHHH
Confidence 5677899999999877 456889999999999988865
No 51
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=46.43 E-value=9.3 Score=25.14 Aligned_cols=12 Identities=25% Similarity=0.825 Sum_probs=10.7
Q ss_pred ChHHHHHHHHhh
Q psy10258 56 KEDELQSILNYL 67 (69)
Q Consensus 56 ~ddEl~aiLNyL 67 (69)
.|+|+||.|||-
T Consensus 72 SDeE~kAMlsyy 83 (106)
T 2npt_A 72 SDEEMKAMLSYY 83 (106)
T ss_dssp SHHHHHHHHHHH
T ss_pred chHHHHHHHHHH
Confidence 599999999984
No 52
>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1
Probab=46.26 E-value=9 Score=23.97 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=13.8
Q ss_pred CCChHHHHHHHHhhhC
Q psy10258 54 GVKEDELQSILNYLTT 69 (69)
Q Consensus 54 g~~ddEl~aiLNyL~T 69 (69)
..+|+|+.+|.+||.+
T Consensus 132 ~Lsd~ei~~laaYl~s 147 (163)
T 1w5c_T 132 NLTEKDLVAIAGHILV 147 (163)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5689999999999863
No 53
>4b4t_X 26S proteasome regulatory subunit RPN13; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} PDB: 2z4d_A
Probab=46.11 E-value=26 Score=23.64 Aligned_cols=44 Identities=14% Similarity=0.293 Sum_probs=21.0
Q ss_pred ceeeeeecCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhCCCCCChHH
Q psy10258 5 KFYYWVVNPRLKTGVIPKGLDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDE 59 (69)
Q Consensus 5 K~YYWvv~Pr~~Sg~~pkgl~g~rp~~~ei~siRa~iL~flkqLi~~~~g~~ddE 59 (69)
|||||.-.|...+| .|..+. +--++|. .-++.|+..+....++|
T Consensus 96 r~fFWmQe~~~~~~-~~~~~s---~kD~~~~-------~~vn~lL~~~~~~~~~e 139 (156)
T 4b4t_X 96 RYFFWLQEKNSGNL-PLNELS---AKDKEIY-------NKMIGVLNNSSESDEEE 139 (156)
T ss_dssp CEEEEECSSCSSSS-SSCCCS---SSSHHHH-------HHHHHHHHCC-------
T ss_pred cEEEEeecCCccCC-cccccc---hhHHHHH-------HHHHHHhcCCcccchhh
Confidence 78999998876544 443331 1113333 45667775554433333
No 54
>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4
Probab=45.82 E-value=9.4 Score=23.57 Aligned_cols=17 Identities=12% Similarity=0.466 Sum_probs=14.4
Q ss_pred CCCChHHHHHHHHhhhC
Q psy10258 53 PGVKEDELQSILNYLTT 69 (69)
Q Consensus 53 ~g~~ddEl~aiLNyL~T 69 (69)
...+|+|+.+|.+||.+
T Consensus 166 ~~Ls~~ei~~l~~yl~s 182 (183)
T 1h1o_A 166 KNITVAQMKDVAAYLSS 182 (183)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 35799999999999863
No 55
>1jdl_A C552, cytochrome C2, ISO-2; alpha helix, electron transport; HET: HEM; 1.70A {Rhodospirillum centenum} SCOP: a.3.1.1
Probab=45.75 E-value=9.5 Score=22.32 Aligned_cols=15 Identities=20% Similarity=0.550 Sum_probs=13.0
Q ss_pred CCh-HHHHHHHHhhhC
Q psy10258 55 VKE-DELQSILNYLTT 69 (69)
Q Consensus 55 ~~d-dEl~aiLNyL~T 69 (69)
+.| +|+.+|.+||.|
T Consensus 102 l~~~~ei~~l~aYL~s 117 (121)
T 1jdl_A 102 LPDEQERKDVVAYLKQ 117 (121)
T ss_dssp CCCHHHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHH
Confidence 666 999999999975
No 56
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=45.74 E-value=15 Score=21.16 Aligned_cols=14 Identities=14% Similarity=0.283 Sum_probs=12.8
Q ss_pred CChHHHHHHHHhhh
Q psy10258 55 VKEDELQSILNYLT 68 (69)
Q Consensus 55 ~~ddEl~aiLNyL~ 68 (69)
.+|+|+.+|.+||.
T Consensus 82 Lsd~ei~~l~~Yi~ 95 (99)
T 3dp5_A 82 IPPADALKIGEYVV 95 (99)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 68999999999985
No 57
>1go3_F DNA-directed RNA polymerase subunit F; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: a.60.8.2
Probab=45.57 E-value=12 Score=23.50 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=10.1
Q ss_pred hHHHHHHHHhhh
Q psy10258 57 EDELQSILNYLT 68 (69)
Q Consensus 57 ddEl~aiLNyL~ 68 (69)
|+|++.||+.+.
T Consensus 93 ~eel~~ILd~l~ 104 (107)
T 1go3_F 93 PENAEEILEIVR 104 (107)
T ss_dssp CTTHHHHHHHHT
T ss_pred cHHHHHHHHHHH
Confidence 888999988875
No 58
>3ogn_A Odorant-binding protein; helix bundle, transport protein; HET: 3OG; 1.30A {Culex quinquefasciatus} PDB: 2l2c_A 2erb_A* 3n7h_A* 4fqt_A* 3k1e_A*
Probab=44.89 E-value=33 Score=20.53 Aligned_cols=41 Identities=22% Similarity=0.381 Sum_probs=24.7
Q ss_pred ecCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhCCCCCChHHHHHHHH
Q psy10258 11 VNPRLKTGVIPKGLDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILN 65 (69)
Q Consensus 11 v~Pr~~Sg~~pkgl~g~rp~~~ei~siRa~iL~flkqLi~~~~g~~ddEl~aiLN 65 (69)
|.||.-..|.|+.+ .+ .++.+.-..+++ .|+++++++.+.|
T Consensus 1 ~~~~~~~~~~~~e~-------~~--~~~~~~~~C~~e-----~gvs~e~~~~~~~ 41 (124)
T 3ogn_A 1 VTPRRDAEYPPPEL-------LE--ALKPLHDICAKK-----TGVTDEAIIEFSD 41 (124)
T ss_dssp CCCCCSSSSSCHHH-------HH--HHHHHHHHHHHH-----HCCCHHHHHHHHH
T ss_pred CCCcccCCCCCHHH-------HH--HHHHHHHHhhhh-----hCcCHHHHHHHHc
Confidence 45776666766533 22 235555555555 3778888887765
No 59
>1qn2_A Cytochrome CH; electron transport; HET: HEC; 2.01A {Methylobacterium extorquens} SCOP: a.3.1.1
Probab=44.20 E-value=8.9 Score=21.79 Aligned_cols=16 Identities=31% Similarity=0.740 Sum_probs=13.4
Q ss_pred CC-ChHHHHHHHHhhhC
Q psy10258 54 GV-KEDELQSILNYLTT 69 (69)
Q Consensus 54 g~-~ddEl~aiLNyL~T 69 (69)
++ +|+|+.+|..||.+
T Consensus 82 ~~~s~~di~~l~aYl~s 98 (100)
T 1qn2_A 82 GISDPKKVDDIIAYLKT 98 (100)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 44 69999999999964
No 60
>1k4u_P Phagocyte NADPH oxidase subunit P47PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens}
Probab=43.93 E-value=11 Score=20.14 Aligned_cols=10 Identities=50% Similarity=0.833 Sum_probs=8.9
Q ss_pred CCCchHHHHH
Q psy10258 27 PRPAQKDILA 36 (69)
Q Consensus 27 ~rp~~~ei~s 36 (69)
||||.++|+.
T Consensus 9 pRPs~~lIl~ 18 (32)
T 1k4u_P 9 PRPSADLILN 18 (32)
T ss_dssp CCCCHHHHHH
T ss_pred CCCCHHHHHH
Confidence 9999999974
No 61
>2af7_A Gamma-carboxymuconolactone decarboxylase; O26336_metth, NESG, TT747, structural genomics, PSI, protein structure initiative; 2.81A {Methanothermobacterthermautotrophicus} SCOP: a.152.1.2
Probab=43.00 E-value=43 Score=20.28 Aligned_cols=38 Identities=24% Similarity=0.414 Sum_probs=26.9
Q ss_pred CchHHHHHHHHHHHH----HHHHHh--hCCCCCChHHHHHHHHh
Q psy10258 29 PAQKDILAIRAYILL----FLKQLM--MLGPGVKEDELQSILNY 66 (69)
Q Consensus 29 p~~~ei~siRa~iL~----flkqLi--~~~~g~~ddEl~aiLNy 66 (69)
|-+.|+++|++.... +++.=+ ....|++++|+..++.-
T Consensus 53 ~k~reLi~la~~~~~gc~~cl~~H~~~a~~~G~t~~ei~e~~~~ 96 (125)
T 2af7_A 53 LKTRELLTLAALTVLRADDQLKSHVRGALNAGCSKDEIIEVMIQ 96 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 668899999988762 222222 23489999999998764
No 62
>3ot2_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.96A {Anabaena variabilis}
Probab=42.33 E-value=8.3 Score=24.62 Aligned_cols=11 Identities=27% Similarity=0.776 Sum_probs=9.1
Q ss_pred eeeeecCCCCC
Q psy10258 7 YYWVVNPRLKT 17 (69)
Q Consensus 7 YYWvv~Pr~~S 17 (69)
-||+|+|..++
T Consensus 136 eyWlVdp~~~~ 146 (187)
T 3ot2_A 136 MGWLIDPDEQT 146 (187)
T ss_dssp EEEEEETTTTE
T ss_pred EEEEEECCCCE
Confidence 48999998776
No 63
>1i8o_A Cytochrome C2; electron transport, heme, ammonia, oxidized; HET: HEC; 1.15A {Rhodopseudomonas palustris} SCOP: a.3.1.1 PDB: 1fj0_A* 1hh7_A* 1i8p_A*
Probab=41.58 E-value=13 Score=21.87 Aligned_cols=15 Identities=20% Similarity=0.538 Sum_probs=13.2
Q ss_pred CCh-HHHHHHHHhhhC
Q psy10258 55 VKE-DELQSILNYLTT 69 (69)
Q Consensus 55 ~~d-dEl~aiLNyL~T 69 (69)
++| +|+.+|+.||.|
T Consensus 97 l~~~~d~~~liaYL~s 112 (114)
T 1i8o_A 97 LANEQQRKDVVAYLAT 112 (114)
T ss_dssp CCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 666 999999999975
No 64
>1wdj_A Hypothetical protein TT1808; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.52.1.27
Probab=41.12 E-value=8.9 Score=24.32 Aligned_cols=11 Identities=18% Similarity=0.265 Sum_probs=9.4
Q ss_pred eeeeecCCCCC
Q psy10258 7 YYWVVNPRLKT 17 (69)
Q Consensus 7 YYWvv~Pr~~S 17 (69)
.||+|+|..++
T Consensus 141 eywlvdp~~~~ 151 (187)
T 1wdj_A 141 LGVLVDPYARA 151 (187)
T ss_dssp EEEEEETTTTE
T ss_pred EEEEEECCCCE
Confidence 49999998884
No 65
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=41.07 E-value=31 Score=21.08 Aligned_cols=32 Identities=13% Similarity=0.020 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCChHHHHHHHHhh
Q psy10258 34 ILAIRAYILLFLKQLMMLGPGVKEDELQSILNYL 67 (69)
Q Consensus 34 i~siRa~iL~flkqLi~~~~g~~ddEl~aiLNyL 67 (69)
+-.+.+.+...|++|. ..|++++||+..-|.+
T Consensus 97 ~~~~~~~i~~~l~~l~--~~~it~~el~~ak~~~ 128 (197)
T 3ih6_A 97 QDKALQTLTATLESLS--SKPFSQEELERARSKW 128 (197)
T ss_dssp HHHHHHHHHHHHHCTT--TSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 4444567777777775 5689999999887765
No 66
>2vhd_A Cytochrome C551 peroxidase; iron, heme, transport, metal-binding, oxidoreduc electron transport; HET: HEC; 2.3A {Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB: 1eb7_A*
Probab=40.68 E-value=40 Score=24.31 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=25.2
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhCCCCCChHHHHHHHHhhhC
Q psy10258 25 DGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTT 69 (69)
Q Consensus 25 ~g~rp~~~ei~siRa~iL~flkqLi~~~~g~~ddEl~aiLNyL~T 69 (69)
+|--++-+|++..=+ . ...+...+|+|+.+|+.||-|
T Consensus 262 dG~~~tL~evv~~y~-------~-~~~~~~Ls~~E~~~LvaFL~t 298 (323)
T 2vhd_A 262 SGQVWELKDAVAIMG-------N-AQLGKQLAPDDVENIVAFLHS 298 (323)
T ss_dssp TTCBCCHHHHHHHHH-------H-HHHCCCCCHHHHHHHHHHHHT
T ss_pred CCccCCHHHHHHHHh-------h-cccCCCCCHHHHHHHHHHHHH
Confidence 444567777774422 1 123567899999999999964
No 67
>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A
Probab=38.32 E-value=8.8 Score=30.96 Aligned_cols=14 Identities=36% Similarity=1.058 Sum_probs=11.0
Q ss_pred cceeeeeecCCCCC
Q psy10258 4 LKFYYWVVNPRLKT 17 (69)
Q Consensus 4 LK~YYWvv~Pr~~S 17 (69)
=|||||+.-|.-.+
T Consensus 136 y~f~ywfafP~~~~ 149 (615)
T 4gsl_A 136 YRFYYWLGVPCFQR 149 (615)
T ss_dssp TEEEEEEEEEEEES
T ss_pred ceEEEEEEEcccCC
Confidence 38999999997544
No 68
>2gc4_D Cytochrome C-L; electron transfer, methylamine dehydrogenase, blue copper protein, oxidoreductase, electron transport; HET: TRQ HEM; 1.90A {Paracoccus denitrificans} SCOP: a.3.1.1 PDB: 2gc7_D* 2mta_C* 1mg2_D* 1mg3_D*
Probab=37.79 E-value=15 Score=22.54 Aligned_cols=15 Identities=13% Similarity=0.350 Sum_probs=13.3
Q ss_pred CChHHHHHHHHhhhC
Q psy10258 55 VKEDELQSILNYLTT 69 (69)
Q Consensus 55 ~~ddEl~aiLNyL~T 69 (69)
.+|+|+.+|.+||.+
T Consensus 108 ls~~ei~~l~~Yl~~ 122 (147)
T 2gc4_D 108 LTLDEMLRTMAWVRH 122 (147)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 689999999999863
No 69
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=37.63 E-value=4 Score=25.73 Aligned_cols=38 Identities=18% Similarity=0.126 Sum_probs=25.9
Q ss_pred eeeeeecCCCC---------------CCCCCCCCCCCCCchHHHHHHHHHHHHHHHH
Q psy10258 6 FYYWVVNPRLK---------------TGVIPKGLDGPRPAQKDILAIRAYILLFLKQ 47 (69)
Q Consensus 6 ~YYWvv~Pr~~---------------Sg~~pkgl~g~rp~~~ei~siRa~iL~flkq 47 (69)
-|+|+|+|..+ +||+++.+.+ -|+-+|++ .-++.|++.
T Consensus 42 ~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~-~~~~~~v~---~~~~~~l~~ 94 (180)
T 2igi_A 42 GPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKAS-TMGDREAE---LATLEFLKQ 94 (180)
T ss_dssp EEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHC-CCCHHHHH---HHHHHHHTT
T ss_pred CcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhc-CCCHHHHH---HHHHHHHHH
Confidence 38999999754 6888887763 56666665 345556664
No 70
>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision, ammonia-oxidizing bacteria, oxidoreductase; HET: HEM; 1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5
Probab=36.26 E-value=53 Score=23.38 Aligned_cols=37 Identities=22% Similarity=0.408 Sum_probs=24.4
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhCCCCCChHHHHHHHHhhhC
Q psy10258 25 DGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTT 69 (69)
Q Consensus 25 ~g~rp~~~ei~siRa~iL~flkqLi~~~~g~~ddEl~aiLNyL~T 69 (69)
+|--++-+|++..=+ . ...+...+|+|+.+|+.||.|
T Consensus 245 dG~~~tL~e~v~~~~-------~-~~~~~~Ls~~e~~~LvaFL~s 281 (308)
T 1iqc_A 245 DGGAATLEQAVETMG-------R-IQLNREFNKDEVSKIVAFLKT 281 (308)
T ss_dssp TCCBCSHHHHHHHHH-------H-HHHCCCCCHHHHHHHHHHHHT
T ss_pred CCccccHHHHHHhhh-------c-cccccCCCHHHHHHHHHHHHH
Confidence 444456677764322 1 123567899999999999965
No 71
>1p8c_A Conserved hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Thermotoga maritima} SCOP: a.152.1.2
Probab=35.39 E-value=81 Score=20.14 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=26.4
Q ss_pred CchHHHHHHHHHHHH----HHHHHh--hCCCCCChHHHHHHHH
Q psy10258 29 PAQKDILAIRAYILL----FLKQLM--MLGPGVKEDELQSILN 65 (69)
Q Consensus 29 p~~~ei~siRa~iL~----flkqLi--~~~~g~~ddEl~aiLN 65 (69)
|.++|+++||+.... +++.=+ ....|++++|+..++.
T Consensus 65 ~k~rELI~Lavs~~ngC~~cl~~H~~~A~~~G~T~eEI~eal~ 107 (145)
T 1p8c_A 65 VKTKELMGLVASTVLRCDDCIRYHLVRCVQEGASDEEIFEALD 107 (145)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 567899999988751 222222 3468999999998875
No 72
>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC; 2.70A {Rhodobacter capsulatus}
Probab=35.02 E-value=39 Score=24.38 Aligned_cols=38 Identities=16% Similarity=0.307 Sum_probs=25.4
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHhhCCCCCChHHHHHHHHhhhC
Q psy10258 24 LDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTT 69 (69)
Q Consensus 24 l~g~rp~~~ei~siRa~iL~flkqLi~~~~g~~ddEl~aiLNyL~T 69 (69)
-+|--++-+|++..= .. ...+...+|+|..+|+.||-|
T Consensus 264 HdG~~~tL~evv~~y-------~~-~~~~~~Ls~~E~~~LvaFL~t 301 (328)
T 1zzh_A 264 HSGKVWDLREAVSVM-------AN-SQLGATLDDTQVDQITAFLGT 301 (328)
T ss_dssp TTTCBCCHHHHHHHH-------HS-STTSCCCCHHHHHHHHHHHGG
T ss_pred cCCccCCHHHHHHHh-------hc-cccCCCCCHHHHHHHHHHHHH
Confidence 355556777777431 11 123566789999999999964
No 73
>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*
Probab=34.33 E-value=12 Score=23.86 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=12.8
Q ss_pred CChHHHHHHHHhhhC
Q psy10258 55 VKEDELQSILNYLTT 69 (69)
Q Consensus 55 ~~ddEl~aiLNyL~T 69 (69)
.+|+|+.+|.+||.+
T Consensus 158 Lsd~eI~alaaY~~S 172 (174)
T 3vrd_A 158 EGEDGLDALFAFYAS 172 (174)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 379999999999863
No 74
>4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans}
Probab=34.17 E-value=24 Score=22.53 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=14.0
Q ss_pred CCCCChHHHHHHHHhhh
Q psy10258 52 GPGVKEDELQSILNYLT 68 (69)
Q Consensus 52 ~~g~~ddEl~aiLNyL~ 68 (69)
+.++.++|++.|.+||.
T Consensus 193 gH~i~~~el~~i~~wL~ 209 (210)
T 4h0c_A 193 PHTISGDEIQLVNNTIL 209 (210)
T ss_dssp CSSCCHHHHHHHHHTTT
T ss_pred CCCcCHHHHHHHHHHHc
Confidence 46788999999999874
No 75
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=34.09 E-value=61 Score=19.38 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=19.4
Q ss_pred HHHHHHHHhhCC---CCCChHHHHHHHH
Q psy10258 41 ILLFLKQLMMLG---PGVKEDELQSILN 65 (69)
Q Consensus 41 iL~flkqLi~~~---~g~~ddEl~aiLN 65 (69)
+-..|++||... .+..|++|..+|+
T Consensus 21 Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~ 48 (76)
T 2ahq_A 21 LMKLIKEIVENEDKRKPYSDQEIANILK 48 (76)
T ss_dssp HHHHHHHHGGGCCSSSCCCHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 446789999765 4578999999884
No 76
>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide, oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}
Probab=33.95 E-value=56 Score=23.88 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=28.3
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHhhCCCCCChHHHHHHHHhhhC
Q psy10258 21 PKGLDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTT 69 (69)
Q Consensus 21 pkgl~g~rp~~~ei~siRa~iL~flkqLi~~~~g~~ddEl~aiLNyL~T 69 (69)
|-.-||.-++-+|++..=+. .| .+...+|+|+++|++||-|
T Consensus 249 PY~HdG~~~tL~evv~~~~~-----~~---~~~~Ls~~E~~~LvaFL~s 289 (320)
T 3o5c_A 249 PYFHDGSVWTLEEAVNTMAD-----IQ---LGQKLTEKETKEMVAFLNS 289 (320)
T ss_dssp SBTTTTCBCSHHHHHHHHHH-----HH---HSCCCCHHHHHHHHHHHHT
T ss_pred HHHcCCCcCcHHHHHHHhcc-----cc---cccCCCHHHHHHHHHHHHH
Confidence 34446666788888854321 12 2567899999999999965
No 77
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=33.84 E-value=31 Score=20.28 Aligned_cols=24 Identities=8% Similarity=0.324 Sum_probs=16.7
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHHHhh
Q psy10258 41 ILLFLKQLMMLGPGVKEDELQSILNYL 67 (69)
Q Consensus 41 iL~flkqLi~~~~g~~ddEl~aiLNyL 67 (69)
...+..+++ .+..++|++.+...|
T Consensus 120 ~~~~~~~~~---~~l~~~e~~~l~~~l 143 (154)
T 2qww_A 120 MYKAMMKVF---ENLTENEIEELIRLN 143 (154)
T ss_dssp HHHHHHHHH---TTSCHHHHHHHHHHH
T ss_pred HHHHHHHHH---hcCCHHHHHHHHHHH
Confidence 445555555 567899988887765
No 78
>3oa8_B SOXX; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_B*
Probab=33.38 E-value=28 Score=24.14 Aligned_cols=15 Identities=20% Similarity=0.603 Sum_probs=13.4
Q ss_pred CChHHHHHHHHhhhC
Q psy10258 55 VKEDELQSILNYLTT 69 (69)
Q Consensus 55 ~~ddEl~aiLNyL~T 69 (69)
.+|+|+.+|.+||.+
T Consensus 187 LSdeEIaaLaaYL~s 201 (208)
T 3oa8_B 187 LTEQQIKDVVAYLFD 201 (208)
T ss_dssp SCHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHc
Confidence 689999999999964
No 79
>3bey_A Conserved protein O27018; TT217, NESG, structural genomics, PSI-2, PROT structure initiative; 2.40A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=33.05 E-value=68 Score=18.09 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=25.8
Q ss_pred CchHHHHHHHHHHHH----HHHHH--hhCCCCCChHHHHHHHHh
Q psy10258 29 PAQKDILAIRAYILL----FLKQL--MMLGPGVKEDELQSILNY 66 (69)
Q Consensus 29 p~~~ei~siRa~iL~----flkqL--i~~~~g~~ddEl~aiLNy 66 (69)
|.++|++++|..... +++.= .....|++++|+.+++.-
T Consensus 34 ~~~reLi~l~vs~~ngc~~c~~~H~~~a~~~G~t~~ei~~~~~~ 77 (96)
T 3bey_A 34 EREKLLISVACSVAVRCDACTRRHAEEALEAGITEGELAEAAAV 77 (96)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 567899999987542 11111 134589999999998753
No 80
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=32.65 E-value=27 Score=25.16 Aligned_cols=20 Identities=5% Similarity=0.454 Sum_probs=15.7
Q ss_pred hCCCCCChHHHHHHHHhhhC
Q psy10258 50 MLGPGVKEDELQSILNYLTT 69 (69)
Q Consensus 50 ~~~~g~~ddEl~aiLNyL~T 69 (69)
|...+.+|+|+.+|.+||.+
T Consensus 404 MP~~~Lsd~ei~~l~~Yl~~ 423 (442)
T 2zoo_A 404 MPAMNLNDEDIANVITFVLN 423 (442)
T ss_dssp ECCCCCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 33344799999999999964
No 81
>2qeu_A Putative carboxymuconolactone decarboxylase; YP_555818.1, carboxymuconolactone decarboxylase family; HET: CIT GOL; 1.65A {Burkholderia xenovorans}
Probab=31.98 E-value=33 Score=21.40 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=25.3
Q ss_pred CchHHHHHHHHHHHHHH-HHHh-----hCCCCCChHHHHHHHH
Q psy10258 29 PAQKDILAIRAYILLFL-KQLM-----MLGPGVKEDELQSILN 65 (69)
Q Consensus 29 p~~~ei~siRa~iL~fl-kqLi-----~~~~g~~ddEl~aiLN 65 (69)
+.++|+++||+.+.-+- ..+- ....|++++|+..++-
T Consensus 65 ~k~reLI~lavs~ngC~~~Cl~~H~~~A~~~G~t~eeI~eai~ 107 (141)
T 2qeu_A 65 LKYKHLILVVLDAIRDEPIGIVNHTRAAMNAGLSVDELIEGIL 107 (141)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56889999998843333 2322 2348999999988764
No 82
>3hq9_A Cytochrome C551 peroxidase; oxidoreductase; HET: HEM; 1.52A {Geobacter sulfurreducens} PDB: 3hq6_A* 3hq8_A* 3hq7_A*
Probab=30.84 E-value=37 Score=25.21 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=27.4
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHhhCCCCCChHHHHHHHHhhhC
Q psy10258 21 PKGLDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTT 69 (69)
Q Consensus 21 pkgl~g~rp~~~ei~siRa~iL~flkqLi~~~~g~~ddEl~aiLNyL~T 69 (69)
|-.-+|.-++.+|++..-+. -..+....|+|+++|++||-|
T Consensus 280 py~H~G~~~tL~~~v~~~~~--------~~~~~~Ls~~E~~~LvaFL~s 320 (345)
T 3hq9_A 280 PYFHSGVVWSLKEAVAVMGS--------AQFGIKLSDDESEAIAAFLGS 320 (345)
T ss_dssp SBTTTTCBCCHHHHHHHHSC--------GGGTCCCCHHHHHHHHHHHHT
T ss_pred ccccCCccccHHHHHHHccc--------cccccCCCHHHHHHHHHHHHH
Confidence 33346667788887754221 112456789999999999965
No 83
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=30.81 E-value=51 Score=20.06 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCChHHHHH
Q psy10258 33 DILAIRAYILLFLKQLMMLGPGVKEDELQS 62 (69)
Q Consensus 33 ei~siRa~iL~flkqLi~~~~g~~ddEl~a 62 (69)
|-.+|.+-||.|+++= +.|++|++|.+
T Consensus 11 ~~~~ie~~IL~l~~~~---P~GItd~~L~~ 37 (81)
T 2dk8_A 11 DPVEIENRIIELCHQF---PHGITDQVIQN 37 (81)
T ss_dssp CHHHHHHHHHHHHHHC---SSCEEHHHHHH
T ss_pred cHHHHHHHHHHHHHhC---CCCCCHHHHHH
Confidence 3456777789888653 68888877764
No 84
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A
Probab=30.08 E-value=14 Score=29.53 Aligned_cols=13 Identities=38% Similarity=1.139 Sum_probs=10.2
Q ss_pred ceeeeeecCCCCC
Q psy10258 5 KFYYWVVNPRLKT 17 (69)
Q Consensus 5 K~YYWvv~Pr~~S 17 (69)
|||||+.-|.-.+
T Consensus 138 ~f~yw~afP~~~~ 150 (598)
T 3vh1_A 138 RFYYWLGVPCFQR 150 (598)
T ss_dssp EEEEEEEEEEEES
T ss_pred EEEEEEEEeccCC
Confidence 7999999885543
No 85
>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome, low potential, BIS_histidinyl, PSII modulator; HET: HEC; 1.21A {Synechocystis SP} SCOP: a.3.1.1
Probab=29.62 E-value=21 Score=21.92 Aligned_cols=15 Identities=20% Similarity=0.415 Sum_probs=12.6
Q ss_pred CCChHHHHHHHHhhh
Q psy10258 54 GVKEDELQSILNYLT 68 (69)
Q Consensus 54 g~~ddEl~aiLNyL~ 68 (69)
..+|+|+.+|..||.
T Consensus 106 ~Lsd~ei~~laaYl~ 120 (135)
T 1e29_A 106 NYTEDDIFDVAGYTL 120 (135)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 357999999999985
No 86
>2xts_B Cytochrome; oxidoreductase-electron transport complex, SOX system, sulfa oxidation, molybdenum cofactor, heme, electron transfer; HET: MTE HEC; 1.33A {Paracoccus pantotrophus}
Probab=28.74 E-value=24 Score=23.56 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=14.2
Q ss_pred CCCChHHHHHHHHhhhC
Q psy10258 53 PGVKEDELQSILNYLTT 69 (69)
Q Consensus 53 ~g~~ddEl~aiLNyL~T 69 (69)
...+|+|+.+|.+||.+
T Consensus 103 ~~LsdeEi~aL~aYl~s 119 (205)
T 2xts_B 103 QTLSVDDTYAITAFLLY 119 (205)
T ss_dssp SCCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHh
Confidence 34689999999999863
No 87
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=28.48 E-value=1e+02 Score=18.72 Aligned_cols=47 Identities=13% Similarity=0.175 Sum_probs=29.9
Q ss_pred ecCCCCCCC----CCCCCCCCCCchHHHHHHHHHHHHHHHHHhhCCCCCChHHHHHHHHhh
Q psy10258 11 VNPRLKTGV----IPKGLDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYL 67 (69)
Q Consensus 11 v~Pr~~Sg~----~pkgl~g~rp~~~ei~siRa~iL~flkqLi~~~~g~~ddEl~aiLNyL 67 (69)
.+|.++-.+ ||+|. +-+-.++...-.+..++. .+..++|++.+...|
T Consensus 80 ~~~~DrR~~~l~LT~~G~-------~~~~~~~~~~~~~~~~~~---~~l~~ee~~~l~~~L 130 (151)
T 4aik_A 80 TSANDRRAKRIKLTEQSS-------PIIEQVDGVISSTRKEIL---GGISSDEIAVLSGLI 130 (151)
T ss_dssp ECSSCTTCEEEEECGGGH-------HHHHHHHHHHHHHHHHHT---TTSCHHHHHHHHHHH
T ss_pred cCCCCCcchhhhcCHHHH-------HHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHH
Confidence 355555432 88876 344455566666666665 568899998887765
No 88
>2d0w_A Cytochrome CL; electron transfer, electron transport; HET: HEM; 1.98A {Hyphomicrobium denitrificans}
Probab=28.12 E-value=29 Score=22.07 Aligned_cols=14 Identities=7% Similarity=0.456 Sum_probs=12.8
Q ss_pred CChHHHHHHHHhhh
Q psy10258 55 VKEDELQSILNYLT 68 (69)
Q Consensus 55 ~~ddEl~aiLNyL~ 68 (69)
.+|+|+.+|..||.
T Consensus 110 Ls~~ei~~l~aYl~ 123 (170)
T 2d0w_A 110 LELDNMLKLIAWIR 123 (170)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 68999999999986
No 89
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=27.82 E-value=17 Score=23.11 Aligned_cols=30 Identities=20% Similarity=0.434 Sum_probs=20.7
Q ss_pred ceeeeeecCCCC--------CCCCCCCCCCCCCchHHHH
Q psy10258 5 KFYYWVVNPRLK--------TGVIPKGLDGPRPAQKDIL 35 (69)
Q Consensus 5 K~YYWvv~Pr~~--------Sg~~pkgl~g~rp~~~ei~ 35 (69)
.-|++.|+|..+ +||+++.+++ -|+-++++
T Consensus 46 ~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~-~~~~~~v~ 83 (186)
T 2p1j_A 46 DEYHTLIKPSREISRKSSEITGITQEMLEN-KRSIEEVL 83 (186)
T ss_dssp EEEEEECBCSSCCCHHHHHHHCCCHHHHTT-CCBHHHHH
T ss_pred EEEEEEECcCCCCCHHHhhhcCCCHHHHhc-CCCHHHHH
Confidence 358999999854 3777777764 36666654
No 90
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=27.67 E-value=1.2e+02 Score=20.57 Aligned_cols=33 Identities=21% Similarity=0.137 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCChHHHHHHHHhh
Q psy10258 33 DILAIRAYILLFLKQLMMLGPGVKEDELQSILNYL 67 (69)
Q Consensus 33 ei~siRa~iL~flkqLi~~~~g~~ddEl~aiLNyL 67 (69)
++-...+.+...++++. ..|++++||+..-+.+
T Consensus 306 ~~~~~~~~i~~~l~~l~--~~~~t~~el~~ak~~l 338 (421)
T 3hdi_A 306 QLDDLVYSIQETTSALA--EKGLTEKELENGKEQL 338 (421)
T ss_dssp GHHHHHHHHHHHHHHHH--TTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 44555667777788875 5789999999887754
No 91
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=27.63 E-value=84 Score=21.17 Aligned_cols=33 Identities=12% Similarity=0.062 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCChHHHHHHHHhh
Q psy10258 33 DILAIRAYILLFLKQLMMLGPGVKEDELQSILNYL 67 (69)
Q Consensus 33 ei~siRa~iL~flkqLi~~~~g~~ddEl~aiLNyL 67 (69)
.+-.+.+.+..+++++.. .|++|+||+...+.+
T Consensus 322 ~~~~~~~~i~~~l~~l~~--~~~~~~el~~ak~~~ 354 (434)
T 3gwb_A 322 MSEGTLKLVQDVFAEYLK--NGPTQKELDDAKREL 354 (434)
T ss_dssp GHHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHH
Confidence 345556778888888874 689999999887765
No 92
>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme, oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus pantotrophus} PDB: 2c1u_A*
Probab=26.71 E-value=1.1e+02 Score=22.24 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=25.0
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhCCCCCChHHHHHHHHhhhC
Q psy10258 25 DGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTT 69 (69)
Q Consensus 25 ~g~rp~~~ei~siRa~iL~flkqLi~~~~g~~ddEl~aiLNyL~T 69 (69)
+|--++-+|++..= .+ ...+...+++|.++|+.||.|
T Consensus 276 dG~~~tL~evv~~y-------~~-~~~~~~Ls~~E~~~LvaFL~s 312 (338)
T 2c1v_A 276 SGVVWELAEAVKIM-------SS-AQIGTELTDQQAEDITAFLGT 312 (338)
T ss_dssp TTCBCCHHHHHHHH-------HH-HHTCCCCCHHHHHHHHHHHHT
T ss_pred CCccCCHHHHHHHH-------Hh-hcccCCCCHHHHHHHHHHHHH
Confidence 45456667776432 22 124677899999999999964
No 93
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=26.69 E-value=34 Score=18.50 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=11.6
Q ss_pred CChHHHHHHHHhh
Q psy10258 55 VKEDELQSILNYL 67 (69)
Q Consensus 55 ~~ddEl~aiLNyL 67 (69)
++|+||..+-|+|
T Consensus 2 IsD~qL~~lan~l 14 (37)
T 2lat_A 2 ITDVQLAIFANML 14 (37)
T ss_dssp CSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 5899999999987
No 94
>3m97_X Cytochrome C-552, cytochrome C552; electron transport chain (cytochrome), electron transfer, P. denitrificans, electron donor; HET: HEC; 1.33A {Paracoccus denitrificans} PDB: 1c7m_A* 1i6d_A* 1i6e_A* 1ql3_A* 1ql4_A*
Probab=26.40 E-value=37 Score=21.80 Aligned_cols=17 Identities=24% Similarity=0.569 Sum_probs=14.1
Q ss_pred CCC-ChHHHHHHHHhhhC
Q psy10258 53 PGV-KEDELQSILNYLTT 69 (69)
Q Consensus 53 ~g~-~ddEl~aiLNyL~T 69 (69)
.++ +|+|+++|..||.|
T Consensus 121 ~gllsdedi~aLiAYL~s 138 (140)
T 3m97_X 121 AGLPKIEDRANLIAYLEG 138 (140)
T ss_dssp CCCCSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 455 69999999999975
No 95
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=26.37 E-value=94 Score=17.54 Aligned_cols=40 Identities=18% Similarity=0.318 Sum_probs=27.2
Q ss_pred CCCchHHHHHHHHHH----HHHHHHHhhCCCCCChHHHHHHHHh
Q psy10258 27 PRPAQKDILAIRAYI----LLFLKQLMMLGPGVKEDELQSILNY 66 (69)
Q Consensus 27 ~rp~~~ei~siRa~i----L~flkqLi~~~~g~~ddEl~aiLNy 66 (69)
++++++++-.|++.. -..|+.....-+|-.|.=++++|+.
T Consensus 6 ~~~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 6 SGCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp SSSCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 556677777766631 1127777777788888888888874
No 96
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=25.95 E-value=76 Score=21.53 Aligned_cols=33 Identities=24% Similarity=0.159 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCChHHHHHHHHhh
Q psy10258 33 DILAIRAYILLFLKQLMMLGPGVKEDELQSILNYL 67 (69)
Q Consensus 33 ei~siRa~iL~flkqLi~~~~g~~ddEl~aiLNyL 67 (69)
+.-...+.+...|+++. ..|++++||+..-|.+
T Consensus 306 ~~~~~~~~i~~~l~~l~--~~~~t~~el~~ak~~l 338 (406)
T 3eoq_A 306 RKGEVLAVLQEELDRLG--REGVGEEEVERAKTPL 338 (406)
T ss_dssp GHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 34455677777888876 4689999999887765
No 97
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=25.52 E-value=1.1e+02 Score=19.18 Aligned_cols=21 Identities=10% Similarity=0.036 Sum_probs=17.8
Q ss_pred HHhhCCCCCChHHHHHHHHhh
Q psy10258 47 QLMMLGPGVKEDELQSILNYL 67 (69)
Q Consensus 47 qLi~~~~g~~ddEl~aiLNyL 67 (69)
.+...|+-+.++|.+.|-.++
T Consensus 38 ~vAkADG~v~~~E~~~i~~~~ 58 (161)
T 2ou3_A 38 TCAKADGVISPEEKDWALGFC 58 (161)
T ss_dssp HHHHSSSCCCHHHHHHHHHHH
T ss_pred HHHhhcCCCCHHHHHHHHHHH
Confidence 667778889999999998875
No 98
>2r2y_A Protein ADRM1; proteasome, ubiquitin, PH-domain, 19S regulator, receptor, U proteasome-degradation pathway; 1.70A {Mus musculus} PDB: 2z59_A
Probab=25.25 E-value=61 Score=21.87 Aligned_cols=10 Identities=20% Similarity=1.345 Sum_probs=8.2
Q ss_pred ceeeeeecCC
Q psy10258 5 KFYYWVVNPR 14 (69)
Q Consensus 5 K~YYWvv~Pr 14 (69)
|||||.-.|.
T Consensus 107 r~FFWmQe~~ 116 (153)
T 2r2y_A 107 RLFFWMQEPK 116 (153)
T ss_dssp EEEEEECSSS
T ss_pred eEEEEecCCC
Confidence 6899998775
No 99
>2c8s_A Cytochrome C-L; HAEM, heme, electron transport, metal-binding; HET: HEM; 1.6A {Methylobacterium extorquens} SCOP: a.3.1.1
Probab=24.79 E-value=34 Score=21.99 Aligned_cols=14 Identities=14% Similarity=0.470 Sum_probs=12.9
Q ss_pred CChHHHHHHHHhhh
Q psy10258 55 VKEDELQSILNYLT 68 (69)
Q Consensus 55 ~~ddEl~aiLNyL~ 68 (69)
.+|+|+.+|.+||.
T Consensus 116 Lsd~ei~~laaYl~ 129 (172)
T 2c8s_A 116 LTPDEMLQTIAWIR 129 (172)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 68999999999985
No 100
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=24.78 E-value=1.3e+02 Score=19.70 Aligned_cols=15 Identities=33% Similarity=0.587 Sum_probs=11.6
Q ss_pred CCChHHHHHHHHhhh
Q psy10258 54 GVKEDELQSILNYLT 68 (69)
Q Consensus 54 g~~ddEl~aiLNyL~ 68 (69)
-..|+|++.||+.+.
T Consensus 131 r~sdEeLe~ILd~l~ 145 (152)
T 2c35_A 131 RFEDEELQQILDDIQ 145 (152)
T ss_dssp TSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 356889999998764
No 101
>1l2l_A ADP-dependent glucokinase; ADP glucokinase APO, transferase; 2.00A {Pyrococcus horikoshii} SCOP: c.72.1.3
Probab=24.58 E-value=29 Score=26.77 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=13.6
Q ss_pred CCCCChHHHHHHHHhh
Q psy10258 52 GPGVKEDELQSILNYL 67 (69)
Q Consensus 52 ~~g~~ddEl~aiLNyL 67 (69)
.-|+.||||..|+|++
T Consensus 291 SlGmNEqELa~l~~~l 306 (457)
T 1l2l_A 291 SVGLNEVELASVVSVM 306 (457)
T ss_dssp EEEECHHHHHHHHHHT
T ss_pred cCccCHHHHHHHHHHc
Confidence 3678999999999886
No 102
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter feacalis; HET: CIT; 2.30A {Enterococcus faecalis}
Probab=24.12 E-value=1.6e+02 Score=19.49 Aligned_cols=35 Identities=11% Similarity=0.257 Sum_probs=23.4
Q ss_pred chHHHHHHHHHHH------HHHHHHhhCCCCCChHHHHHHHHh
Q psy10258 30 AQKDILAIRAYIL------LFLKQLMMLGPGVKEDELQSILNY 66 (69)
Q Consensus 30 ~~~ei~siRa~iL------~flkqLi~~~~g~~ddEl~aiLNy 66 (69)
|.+||-.+|.+-- .-+.+. ...|++|.|+.+.+.+
T Consensus 6 s~~EI~~mr~A~~i~~~a~~~~~~~--ikpG~tE~el~~~~~~ 46 (264)
T 3tb5_A 6 SPREIEMMDESGELLADVHRHLRTF--IKPGITSWDIEVFVRD 46 (264)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH--CCTTCBHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh--CcCCCCHHHHHHHHHH
Confidence 5678888886532 222232 3579999999988754
No 103
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=23.94 E-value=29 Score=21.88 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=20.0
Q ss_pred eeeeeecCCCC--------CCCCCCCCCCCCCchHHHH
Q psy10258 6 FYYWVVNPRLK--------TGVIPKGLDGPRPAQKDIL 35 (69)
Q Consensus 6 ~YYWvv~Pr~~--------Sg~~pkgl~g~rp~~~ei~ 35 (69)
-|+|.|+|..+ .||+++.+.+ -|+-+|++
T Consensus 50 ~f~~lv~P~~~i~~~~~~i~GIt~~~l~~-~~~~~~v~ 86 (194)
T 2gui_A 50 NFHVYLKPDRLVDPEAFGVHGIADEFLLD-KPTFAEVA 86 (194)
T ss_dssp CEEEECCCSSCCCHHHHHHHCCCHHHHTT-SCCHHHHH
T ss_pred EEEEEECcCCcCCHHHHHhhCcCHHHHhC-CCCHHHHH
Confidence 48999999853 2778777764 35556654
No 104
>1gkm_A Histidase, HAL, histidine ammonia-lyase; histidine degradation; HET: MDO; 1.0A {Pseudomonas putida} SCOP: a.127.1.2 PDB: 1b8f_A* 1gkj_A* 1eb4_A* 1gk3_A 1gk2_A
Probab=23.28 E-value=1.3e+02 Score=23.61 Aligned_cols=34 Identities=15% Similarity=0.358 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCChHHHHHHHHhh
Q psy10258 32 KDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYL 67 (69)
Q Consensus 32 ~ei~siRa~iL~flkqLi~~~~g~~ddEl~aiLNyL 67 (69)
+|++ ||.|+.=++.|..-.+|++-+=++.++.+|
T Consensus 93 ~~~v--Ra~m~~RlnsL~~G~SGVr~evv~~l~~~L 126 (507)
T 1gkm_A 93 DDLV--RLIMVLKINSLSRGFSGIRRKVIDALIALV 126 (507)
T ss_dssp HHHH--HHHHHHHHHHHTTSCSCCCHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHccCcCcCcHHHHHHHHHHH
Confidence 5555 999999999999888999988888887776
No 105
>2qve_A Tyrosine aminomutase; MIO, enediyne, transferase; HET: MDO 247; 2.00A {Streptomyces globisporus} PDB: 2rjr_A* 2rjs_A* 2ohy_A* 3kdz_A* 3kdy_A*
Probab=23.04 E-value=1.3e+02 Score=23.69 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCChHHHHHHHHhh
Q psy10258 32 KDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYL 67 (69)
Q Consensus 32 ~ei~siRa~iL~flkqLi~~~~g~~ddEl~aiLNyL 67 (69)
.|++ ||.|+.=++.|..-.+|++-+=++.++.+|
T Consensus 92 ~~~v--Ra~m~~RlnsL~~G~SGVr~evve~l~~~L 125 (526)
T 2qve_A 92 EDEA--RAIVAARLNTLAKGHSAVRPIILERLAQYL 125 (526)
T ss_dssp HHHH--HHHHHHHHHHHTTSCSCCCHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHccCcCCCcHHHHHHHHHHH
Confidence 5665 999999999999988999988888887776
No 106
>3hzs_A Monofunctional glycosyltransferase; transglycosylase, peptidoglycan, moenomycin, membrane, cell shape; HET: M0E; 2.10A {Staphylococcus aureus subsp} SCOP: d.2.1.0
Probab=22.82 E-value=1.8e+02 Score=20.24 Aligned_cols=46 Identities=9% Similarity=0.022 Sum_probs=28.5
Q ss_pred ecCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhCCCCCChHHHHHHHHh
Q psy10258 11 VNPRLKTGVIPKGLDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNY 66 (69)
Q Consensus 11 v~Pr~~Sg~~pkgl~g~rp~~~ei~siRa~iL~flkqLi~~~~g~~ddEl~aiLNy 66 (69)
..|++||.|.|..- .+....-|..+| ++ +...+-++++|.++-++=
T Consensus 162 gl~~~Ps~y~P~~~------~~~a~~Rr~~VL---~~-M~~~g~It~~e~~~A~~e 207 (209)
T 3hzs_A 162 SKVNAPSVYNINNM------SENFTQRVSTNL---EK-MKQQNYINETQYQQAMSQ 207 (209)
T ss_dssp HHTTSTTTCCSSSC------CHHHHHHHHHHH---HH-HHHTTSSCHHHHHHHHHH
T ss_pred hhccCccccCCCCC------HHHHHHHHHHHH---HH-HHHcCCCCHHHHHHHHHh
Confidence 46888888888532 144455555555 33 334566788888877653
No 107
>1vke_A Carboxymuconolactone decarboxylase family protein; TM1620, structural genomics, JC protein structure initiative, PSI; 1.56A {Thermotoga maritima} SCOP: a.152.1.2
Probab=22.73 E-value=1.4e+02 Score=18.77 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=25.6
Q ss_pred CchHHHHHHHHHHHH----HHHHHh--hCCCCCChHHHHHHHH
Q psy10258 29 PAQKDILAIRAYILL----FLKQLM--MLGPGVKEDELQSILN 65 (69)
Q Consensus 29 p~~~ei~siRa~iL~----flkqLi--~~~~g~~ddEl~aiLN 65 (69)
|.+.|+++||+.... ++..=+ ....|++++|+..++.
T Consensus 55 ~k~rELI~Lavs~~ngC~yCl~~H~~~A~~~G~t~eeI~eal~ 97 (133)
T 1vke_A 55 VKTKELMGLVASTVLRCDDCIRYHLVRCVQEGASDEEIFEALD 97 (133)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 667899999987652 222211 2348999999998874
No 108
>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A*
Probab=22.63 E-value=90 Score=24.94 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=20.2
Q ss_pred HHHHHHHh-hCCCCCChHHHHHHHHhhh
Q psy10258 42 LLFLKQLM-MLGPGVKEDELQSILNYLT 68 (69)
Q Consensus 42 L~flkqLi-~~~~g~~ddEl~aiLNyL~ 68 (69)
..-+.+.+ +.+-.++|+|..+|++||.
T Consensus 37 q~tV~RM~~~~Ga~ISdEE~~aIaaYLA 64 (489)
T 1pby_A 37 DMTVTRMMRNHGVALEPEERAAIVRHLS 64 (489)
T ss_dssp HHHHHHHHHHSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcCCCCCHHHHHHHHHHHH
Confidence 33455555 5566789999999999995
No 109
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=22.36 E-value=36 Score=20.72 Aligned_cols=13 Identities=15% Similarity=0.439 Sum_probs=10.1
Q ss_pred hHHHHHHHHhhhC
Q psy10258 57 EDELQSILNYLTT 69 (69)
Q Consensus 57 ddEl~aiLNyL~T 69 (69)
-+=+..||||+-|
T Consensus 50 p~~F~~ILnflR~ 62 (100)
T 1t1d_A 50 RPSFDAILYFYQS 62 (100)
T ss_dssp STTHHHHHHHHHT
T ss_pred hHHHHHHHHHHhc
Confidence 4558999999864
No 110
>2o6y_A Putative histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.50A {Rhodobacter sphaeroides} PDB: 2o7b_A* 2o7d_A* 2o7e_A* 2o78_A* 2o7f_A*
Probab=22.26 E-value=1.4e+02 Score=23.52 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCChHHHHHHHHhh
Q psy10258 32 KDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYL 67 (69)
Q Consensus 32 ~ei~siRa~iL~flkqLi~~~~g~~ddEl~aiLNyL 67 (69)
+|++ ||.|++=++.|..-.+|++-+=++.++.+|
T Consensus 100 ~~~v--Ra~m~~RlnsL~~G~SGVr~evve~l~~~L 133 (521)
T 2o6y_A 100 WTTA--RAMVLARLVSIAQGASGASEGTIARLIDLL 133 (521)
T ss_dssp HHHH--HHHHHHHHHHHTTSCSCCCHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHccCCCcCcHHHHHHHHHHH
Confidence 5565 999999999999988999998888888776
No 111
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=22.14 E-value=50 Score=20.69 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=16.4
Q ss_pred HHHhhCCCCCChHHHHHHHHhh
Q psy10258 46 KQLMMLGPGVKEDELQSILNYL 67 (69)
Q Consensus 46 kqLi~~~~g~~ddEl~aiLNyL 67 (69)
+.+.....+..++++++|++++
T Consensus 103 ~~l~~r~~~Ls~e~~~~l~~ii 124 (135)
T 3r1f_A 103 RRIAQRAHGLPSAAQQKVLDRI 124 (135)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHH
Confidence 3444444678999999999886
No 112
>1y2m_A Phenylalanine ammonia-lyase; alpha helices; HET: MSE; 1.60A {Rhodosporidium toruloides} PDB: 1t6j_A* 1t6p_A*
Probab=22.00 E-value=1.5e+02 Score=24.50 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=32.2
Q ss_pred CchHHHHHHHHHHHHHHHHHhhCCCCCChHHHHHHHHhh
Q psy10258 29 PAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYL 67 (69)
Q Consensus 29 p~~~ei~siRa~iL~flkqLi~~~~g~~ddEl~aiLNyL 67 (69)
|=..+++ ||.|+.=++.|..-.+|++-+=+++++.+|
T Consensus 159 ~lp~~~v--Ra~MllRlnsL~~G~SGVr~evle~L~~lL 195 (716)
T 1y2m_A 159 SLPLEVV--RGAMTIRVNSLTRGHSAVRLVVLEALTNFL 195 (716)
T ss_dssp BCCHHHH--HHHHHHHHHHHTTSSSCCCHHHHHHHHHHH
T ss_pred CCCHHHH--HHHHHHHHHHHccCCCCCCHHHHHHHHHHH
Confidence 4557777 999999999999988999998888888776
No 113
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=21.97 E-value=42 Score=24.18 Aligned_cols=41 Identities=34% Similarity=0.457 Sum_probs=27.6
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhCC--C-CCC-hHHHHHHHH
Q psy10258 19 VIPKGLDGPRPAQKDILAIRAYILLFLKQLMMLG--P-GVK-EDELQSILN 65 (69)
Q Consensus 19 ~~pkgl~g~rp~~~ei~siRa~iL~flkqLi~~~--~-g~~-ddEl~aiLN 65 (69)
++++.+ ..|+++|++.|=. ||-+.|... - +.+ |||+-.+|-
T Consensus 34 is~k~L--~~Pt~KdF~~if~----fL~~~idp~~~~~~~k~eeev~~~lK 78 (315)
T 2ve7_A 34 VSMKSL--QAPSVKDFLKIFT----FLYGFLCPSYELPDTKFEEEVPRIFK 78 (315)
T ss_dssp CCTGGG--SSCCHHHHHHHHH----HHHTTTSTTCCCCSSCHHHHHHHHHH
T ss_pred CCcccC--CCCCHHHHHHHHH----HHHHhcCCCCccCCCChHHHHHHHHH
Confidence 677877 6789999996644 444555432 1 233 999988774
No 114
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=21.77 E-value=22 Score=22.78 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=24.4
Q ss_pred eeeeecCCCC--------CCCCCCCCCCCCCchHHHHHHHHHHHHHHH
Q psy10258 7 YYWVVNPRLK--------TGVIPKGLDGPRPAQKDILAIRAYILLFLK 46 (69)
Q Consensus 7 YYWvv~Pr~~--------Sg~~pkgl~g~rp~~~ei~siRa~iL~flk 46 (69)
|.+.|+|..+ +||+++.+++ -|+-+|++ .-++.|++
T Consensus 39 ~~~lV~P~~~i~~~~~~i~GIt~~~l~~-a~~~~~v~---~~~~~~l~ 82 (189)
T 1wlj_A 39 YDKFIRPEGEITDYRTRVSGVTPQHMVG-ATPFAVAR---LEILQLLK 82 (189)
T ss_dssp EEEEEECSSCEEECCHHHHCCCHHHHTT-CEEHHHHH---HHHHHHHT
T ss_pred EeeEecCCCCCCccccCCCCCCHHHHcC-CCCHHHHH---HHHHHHHC
Confidence 7789999764 4888888874 56777765 33444554
No 115
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=21.72 E-value=35 Score=20.20 Aligned_cols=20 Identities=15% Similarity=0.443 Sum_probs=16.7
Q ss_pred HHhhCCCCCChHHHHHHHHh
Q psy10258 47 QLMMLGPGVKEDELQSILNY 66 (69)
Q Consensus 47 qLi~~~~g~~ddEl~aiLNy 66 (69)
+=|..|+|...+|++.+|..
T Consensus 39 ~RIA~GSG~~v~eVn~Llkq 58 (69)
T 1dul_A 39 RRIAAGSGMQVQDVNRLLKQ 58 (69)
T ss_dssp HHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHccCCCCHHHHHHHHHH
Confidence 44667999999999999874
No 116
>3ppu_A Glutathione-S-transferase; GST fold; HET: GSH; 2.30A {Phanerochaete chrysosporium}
Probab=21.19 E-value=17 Score=26.31 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=18.7
Q ss_pred cccceeeeeecCCCCCCCCCCCC
Q psy10258 2 HTLKFYYWVVNPRLKTGVIPKGL 24 (69)
Q Consensus 2 HtLK~YYWvv~Pr~~Sg~~pkgl 24 (69)
|.-++||..-.+-.++||+|.|=
T Consensus 321 ~ik~~y~~s~~~~np~~i~p~gp 343 (352)
T 3ppu_A 321 HIKTHYFWSHTFINPHRIVPIGP 343 (352)
T ss_dssp HHHHHHHHHCTTTCTTCCCCCCS
T ss_pred HHHHHHHHhccccCCCceeeCCC
Confidence 44568888888889999999963
No 117
>2yii_A Phenylalanine ammonia-lyase; HET: MDO; 2.18A {Taxus wallichiana var} PDB: 3nz4_A*
Probab=21.02 E-value=1.6e+02 Score=24.27 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=31.8
Q ss_pred CchHHHHHHHHHHHHHHHHHhhCCCCCChHHHHHHHHhh
Q psy10258 29 PAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYL 67 (69)
Q Consensus 29 p~~~ei~siRa~iL~flkqLi~~~~g~~ddEl~aiLNyL 67 (69)
|=..+++ ||.|++=++.|..-.+|++-+=+++++.+|
T Consensus 143 ~lp~~~v--Ra~MllRlnsL~~G~SGVr~evve~L~~lL 179 (705)
T 2yii_A 143 ELPATAT--RSAMLLRLNSFTYGCSGIRWEVMEALEKLL 179 (705)
T ss_dssp CBCHHHH--HHHHHHHHHHHTTSCSCCCHHHHHHHHHHH
T ss_pred CCCHHHH--HHHHHHHHHHHccCCCCCCHHHHHHHHHHH
Confidence 4446776 999999999999988999998888888776
No 118
>2jxu_A TERB, KP-TERB; tellurite resistance protein, plasmid, unknown function; NMR {Klebsiella pneumoniae ntuh-k2044}
Probab=21.00 E-value=1.4e+02 Score=18.19 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=18.8
Q ss_pred HHHHHHHhhCCCCCChHHHHHHHHhhh
Q psy10258 42 LLFLKQLMMLGPGVKEDELQSILNYLT 68 (69)
Q Consensus 42 L~flkqLi~~~~g~~ddEl~aiLNyL~ 68 (69)
...+-.+...++.+.++|.+.|-+++.
T Consensus 35 ~al~~~vA~ADG~v~~~E~~~i~~~l~ 61 (153)
T 2jxu_A 35 VAVCARIAVASDGVSSEEKQKMIGFLR 61 (153)
T ss_dssp HHHHHHHHCCSSSCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 334445556677788999998887763
No 119
>1gc5_A ADP-dependent glucokinase; ALFA/beta sandwichs, induced-fitting, transferase; HET: ADP; 2.30A {Thermococcus litoralis} SCOP: c.72.1.3
Probab=20.99 E-value=38 Score=26.26 Aligned_cols=16 Identities=38% Similarity=0.582 Sum_probs=13.5
Q ss_pred CCCCChHHHHHHHHhh
Q psy10258 52 GPGVKEDELQSILNYL 67 (69)
Q Consensus 52 ~~g~~ddEl~aiLNyL 67 (69)
.-|+.||||..|+|++
T Consensus 301 SlGmNEqELa~l~~~l 316 (467)
T 1gc5_A 301 SVGLNEVELASIMEII 316 (467)
T ss_dssp EEEECHHHHHHHHHHT
T ss_pred cCccCHHHHHHHHHHc
Confidence 3678999999999886
No 120
>2nyn_A Phenylalanine/histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.90A {Anabaena variabilis} PDB: 3czo_A* 2nyf_A*
Probab=20.93 E-value=1.5e+02 Score=23.68 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCChHHHHHHHHhh
Q psy10258 32 KDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYL 67 (69)
Q Consensus 32 ~ei~siRa~iL~flkqLi~~~~g~~ddEl~aiLNyL 67 (69)
.|++ ||.|++=++.|..-.+|++-+=++.++.+|
T Consensus 118 ~~~v--Ra~mllRlnsL~~G~SGVr~evve~L~~lL 151 (565)
T 2nyn_A 118 LADV--RAAMLLRANSHMRGASGIRLELIKRMEIFL 151 (565)
T ss_dssp HHHH--HHHHHHHHHHHTTSCSCCCHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHccCcCCCcHHHHHHHHHHH
Confidence 5555 999999999999988999988888888776
No 121
>3rh3_A Uncharacterized DUF3829-like protein; all alpha protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=20.93 E-value=54 Score=24.28 Aligned_cols=41 Identities=15% Similarity=0.378 Sum_probs=27.5
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhCCCCCChHHHHHHHHhh
Q psy10258 17 TGVIPKGLDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYL 67 (69)
Q Consensus 17 Sg~~pkgl~g~rp~~~ei~siRa~iL~flkqLi~~~~g~~ddEl~aiLNyL 67 (69)
+-++|++++ .-++|+.-=---|.++|.++ ++.+++++++|+
T Consensus 5 ~~~s~~e~e----~AneVI~yYNtsL~~lk~~~------~~~~in~Vl~Ym 45 (264)
T 3rh3_A 5 SSESTEELD----DASKVINYYHMSLAVLRHVA------NAKDINAVLGYM 45 (264)
T ss_dssp ----CHHHH----HHHHHHHHHHHHHHHHHHHS------CHHHHHHHHHHH
T ss_pred CCCCHHHHH----HHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHH
Confidence 444555555 55677766666677777776 899999999997
No 122
>4ayb_F DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_F 2y0s_F 2waq_F 4b1o_F 4b1p_U 2pmz_F 3hkz_F
Probab=20.71 E-value=46 Score=20.85 Aligned_cols=14 Identities=14% Similarity=0.503 Sum_probs=11.2
Q ss_pred CChHHHHHHHHhhh
Q psy10258 55 VKEDELQSILNYLT 68 (69)
Q Consensus 55 ~~ddEl~aiLNyL~ 68 (69)
..|+||+.||+.|.
T Consensus 95 ~~deeL~~IL~~l~ 108 (113)
T 4ayb_F 95 YTSEDIQKIIDIIR 108 (113)
T ss_dssp CCCTHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHH
Confidence 47899999999764
No 123
>1yyb_A Programmed cell death protein 5; PDCD5(1-26), solution structure, apoptosis; NMR {Homo sapiens} SCOP: j.121.1.1
Probab=20.23 E-value=37 Score=16.82 Aligned_cols=10 Identities=30% Similarity=0.793 Sum_probs=6.3
Q ss_pred CCChHHHHHH
Q psy10258 54 GVKEDELQSI 63 (69)
Q Consensus 54 g~~ddEl~ai 63 (69)
|..|+||++|
T Consensus 1 ~~~d~ELeai 10 (27)
T 1yyb_A 1 GSADEELEAL 10 (27)
T ss_dssp -CHHHHHHHH
T ss_pred CcchHHHHHH
Confidence 3456788876
No 124
>3unv_A ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea agglomerans}
Probab=20.10 E-value=1.5e+02 Score=23.58 Aligned_cols=34 Identities=12% Similarity=0.159 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCChHHHHHHHHhh
Q psy10258 32 KDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYL 67 (69)
Q Consensus 32 ~ei~siRa~iL~flkqLi~~~~g~~ddEl~aiLNyL 67 (69)
+|++ ||.|++=++.|..-.+|++-+=++.++.+|
T Consensus 118 ~~~v--Ra~mllRlnsL~~G~SGVr~evve~L~~lL 151 (547)
T 3unv_A 118 DTTV--RATMLARIVSLSRGNSAISIVNFKKLIEIY 151 (547)
T ss_dssp HHHH--HHHHHHHHHHHHTSCSCCCHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHccCCCCcCHHHHHHHHHHH
Confidence 5665 999999999999988999998888888776
No 125
>2qzi_A Uncharacterized protein; APC86636, streptococcus thermophilus LMG 18311, structural G PSI-2, protein structure initiative; 2.20A {Streptococcus thermophilus}
Probab=20.05 E-value=48 Score=21.47 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=14.5
Q ss_pred hCCCCCChHHHHHHHHhhh
Q psy10258 50 MLGPGVKEDELQSILNYLT 68 (69)
Q Consensus 50 ~~~~g~~ddEl~aiLNyL~ 68 (69)
.+...++|+|+.-++.+|+
T Consensus 54 N~~R~I~~~EIefii~~lL 72 (103)
T 2qzi_A 54 NKHRAVKDNELEVIREFFL 72 (103)
T ss_dssp CSSSCCCHHHHHHHHHHHH
T ss_pred cCCCcCCHHHHHHHHHHHH
Confidence 4457788999988888774
Done!