RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10258
(69 letters)
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 0.36
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 20/39 (51%)
Query: 3 TLKFYYWVVNPRLKTGVIPKGLDGPRPAQKDILAIRAYI 41
+LK Y D PA LAI+A +
Sbjct: 28 SLKLY----AD-----------DSA-PA----LAIKATM 46
>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET:
HEC; 1.24A {Rhodothermus marinus}
Length = 124
Score = 26.2 bits (57), Expect = 0.73
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 49 MMLGPGVKEDELQSILNYLTT 69
MM + E++ ++IL YL
Sbjct: 99 MMTDMALSEEQARAILEYLRQ 119
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain,
oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Length = 99
Score = 25.6 bits (56), Expect = 0.98
Identities = 6/37 (16%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 34 ILAIRAYILLFLKQLMM-LGPGVKEDELQSILNYLTT 69
IL A ++ +M + E E+ +++ ++
Sbjct: 61 ILQPGAKVVQGYPNVMPASYASLSEREVAALIEFIKQ 97
>3t7h_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, ligase;
1.60A {Saccharomyces cerevisiae} PDB: 3t7f_A 3t7g_A
3ruj_A
Length = 291
Score = 25.5 bits (55), Expect = 1.3
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 5 KFYYWVVNPRLKTGVIPKGLDGPRPAQKDILA 36
+FYYW+ P + P P+ K + +
Sbjct: 137 RFYYWLGVPCFQRPSSTVLHVRPEPSLKGLFS 168
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 24.6 bits (53), Expect = 3.4
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 31/76 (40%)
Query: 20 IPKGLDGPRPAQKDILAIRAYI----------------LLF------LKQLMML--GPGV 55
+ + D K++ I+ YI LF QL+ + G G
Sbjct: 108 LLQENDTTLVKTKEL--IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 56 KE---DELQSILNYLT 68
+ +EL+ + Y T
Sbjct: 166 TDDYFEELRDL--YQT 179
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 24.0 bits (53), Expect = 3.9
Identities = 6/22 (27%), Positives = 8/22 (36%), Gaps = 1/22 (4%)
Query: 45 LKQLM-MLGPGVKEDELQSILN 65
L M +G E EL +
Sbjct: 33 LGNCMRTMGYMPTEMELIELSQ 54
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 24.0 bits (53), Expect = 4.0
Identities = 7/22 (31%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 45 LKQLM-MLGPGVKEDELQSILN 65
LK M LG K++E++ +++
Sbjct: 28 LKVAMRALGFEPKKEEIKKMIS 49
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding,
transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Length = 87
Score = 23.6 bits (51), Expect = 4.8
Identities = 4/22 (18%), Positives = 14/22 (63%)
Query: 46 KQLMMLGPGVKEDELQSILNYL 67
K + + G+ + EL+++ +++
Sbjct: 62 KPQLTMLKGLSDAELKALADFI 83
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus}
SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C
1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A
1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 23.7 bits (52), Expect = 4.9
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 45 LKQLM-MLGPGVKEDELQSILN 65
L +M MLG ++EL +I+
Sbjct: 42 LGTVMRMLGQNPTKEELDAIIE 63
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis,
centromere, cell cycle, microtubule, C division,
calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Length = 315
Score = 24.0 bits (51), Expect = 5.3
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 21 PKGLDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYL 67
K L P+ KD L I ++ FL L E+E+ I L
Sbjct: 36 MKSL--QAPSVKDFLKIFTFLYGFLCPSYELPDTKFEEEVPRIFKDL 80
>3fwb_A Cell division control protein 31; gene gating, complex, cell
cycle, cell division, mitosis, MR transport, nuclear
pore complex, nucleus, phosphoprotein; 2.50A
{Saccharomyces cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 23.7 bits (52), Expect = 5.4
Identities = 6/22 (27%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 45 LKQLM-MLGPGVKEDELQSILN 65
LK M LG + + E+ +++
Sbjct: 45 LKVAMKALGFELPKREILDLID 66
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 23.7 bits (52), Expect = 5.6
Identities = 2/22 (9%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 45 LKQLM-MLGPGVKEDELQSILN 65
+ ++ +LG + ++ +++
Sbjct: 36 IGIILEVLGIQQTKSTIRQLID 57
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium
binding, ME binding protein-toxin complex; 2.20A
{Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 23.7 bits (52), Expect = 5.6
Identities = 7/22 (31%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 45 LKQLM-MLGPGVKEDELQSILN 65
LK M LG K++E++ +++
Sbjct: 50 LKVAMRALGFEPKKEEIKKMIS 71
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET:
BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A
1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T*
1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C*
2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 23.7 bits (52), Expect = 6.3
Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 45 LKQLM-MLGPGVKEDELQSILN 65
L ++M MLG +ELQ +++
Sbjct: 41 LGKVMRMLGQNPTPEELQEMID 62
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA
polymerase, nucleotidyltransferase, transcription,
transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Length = 329
Score = 23.6 bits (52), Expect = 6.4
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 53 PGVKEDELQSILN 65
GV+ED L+ +LN
Sbjct: 72 EGVQEDILEILLN 84
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase
holoenzyme, streptolydigin, antibiotic, transcription
regulation; HET: STD; 2.40A {Thermus thermophilus}
SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A*
2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A*
2ppb_A* 3aoh_A* 3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A*
1l9z_A 1l9u_A* 1ynn_A* ...
Length = 315
Score = 23.6 bits (52), Expect = 6.5
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 53 PGVKEDELQSILN 65
PGVKED ++ ILN
Sbjct: 69 PGVKEDVVEIILN 81
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 23.7 bits (50), Expect = 7.2
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 16/77 (20%)
Query: 1 MHTLKFYYWVVNPRLKTGVIPKGLDGPRPAQKDILAIRA-YILLFL---------KQLMM 50
+ T + V +L T +I L+ PA+ R + L + L +
Sbjct: 341 LATWDNWKHVNCDKLTT-IIESSLNVLEPAE-----YRKMFDRLSVFPPSAHIPTILLSL 394
Query: 51 LGPGVKEDELQSILNYL 67
+ V + ++ ++N L
Sbjct: 395 IWFDVIKSDVMVVVNKL 411
>1bdf_A RNA polymerase alpha subunit; nucleotidyltransferase, assemble;
2.50A {Escherichia coli} SCOP: d.74.3.1 d.181.1.1
Length = 235
Score = 23.6 bits (52), Expect = 7.3
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 53 PGVKEDELQSILN 65
GV+ED L+ +LN
Sbjct: 72 EGVQEDILEILLN 84
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 23.3 bits (51), Expect = 7.8
Identities = 5/22 (22%), Positives = 7/22 (31%), Gaps = 1/22 (4%)
Query: 45 LKQLM-MLGPGVKEDELQSILN 65
+K + E LQ I
Sbjct: 22 VKAFVSKKRAIKNEQLLQLIFK 43
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.144 0.437
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,057,848
Number of extensions: 48610
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 20
Length of query: 69
Length of database: 6,701,793
Length adjustment: 39
Effective length of query: 30
Effective length of database: 5,612,874
Effective search space: 168386220
Effective search space used: 168386220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.9 bits)