RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10258
         (69 letters)



>d1i8oa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas palustris
           [TaxId: 1076]}
          Length = 114

 Score = 22.9 bits (48), Expect = 3.3
 Identities = 8/45 (17%), Positives = 14/45 (31%)

Query: 25  DGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTT 69
             P    K  L  +      +    M      E + + ++ YL T
Sbjct: 68  ADPNAFLKKFLTEKGKADQAVGVTKMTFKLANEQQRKDVVAYLAT 112


>d1w27a_ a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {Parsley
           (Petroselinum crispum), PAL1 [TaxId: 4043]}
          Length = 692

 Score = 23.4 bits (50), Expect = 3.5
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 18  GVIPKGLDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYL 67
           G+   G D   P      A RA +L+ +  L+    G++ + L++I  +L
Sbjct: 117 GIFGNGSDNTLPHS----ATRAAMLVRINTLLQGYSGIRFEILEAITKFL 162


>d3c2ca_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum rubrum [TaxId:
           1085]}
          Length = 112

 Score = 22.4 bits (47), Expect = 5.7
 Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 20/64 (31%)

Query: 6   FYYWVVNPRLKTGVIPKGLDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILN 65
              +V NP+     + +    P+   K                 M     K+DE+++++ 
Sbjct: 67  LAAYVKNPK---AFVLEKSGDPKAKSK-----------------MTFKLTKDDEIENVIA 106

Query: 66  YLTT 69
           YL T
Sbjct: 107 YLKT 110


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.144    0.437 

Gapped
Lambda     K      H
   0.267   0.0503    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 258,546
Number of extensions: 9494
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 4
Length of query: 69
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 32
Effective length of database: 1,899,586
Effective search space: 60786752
Effective search space used: 60786752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.4 bits)