BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10259
         (135 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
          Length = 220

 Score = 28.5 bits (62), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 53  YWVIMNKQDYSWDDHGYSLMNRLYNDVGNLLDDKFKIAYNLTYY 96
           YW++ N    +W + GY  + R    VG     K K +Y + YY
Sbjct: 177 YWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAK-KASYPVKYY 219


>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
 pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
 pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
          Length = 220

 Score = 28.5 bits (62), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 53  YWVIMNKQDYSWDDHGYSLMNRLYNDVGNLLDDKFKIAYNLTYY 96
           YW++ N    +W + GY  + R    VG     K K +Y + YY
Sbjct: 177 YWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAK-KASYPVKYY 219


>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
           Endoprotease B Isoform 2 (Ep-B2) In Complex With
           Leupeptin
 pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
           Endoprotease B Isoform 2 (Ep-B2) In Complex With
           Leupeptin
 pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
           Endoprotease B Isoform 2 (Ep-B2) In Complex With
           Leupeptin
 pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
           Endoprotease B Isoform 2 (Ep-B2) In Complex With
           Leupeptin
          Length = 262

 Score = 28.5 bits (62), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 11/47 (23%), Positives = 20/47 (42%)

Query: 51  QTYWVIMNKQDYSWDDHGYSLMNRLYNDVGNLLDDKFKIAYNLTYYT 97
           + YW + N    SW + GY  + +     G L     + +Y +  Y+
Sbjct: 181 KAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPVKTYS 227


>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
          Length = 215

 Score = 27.3 bits (59), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 53  YWVIMNKQDYSWDDHGYSLMNRLYNDV 79
           +W+I N    SW + GY LM R  N+ 
Sbjct: 177 HWIIKNSWGESWGNKGYILMARNKNNA 203


>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
           Bound To Cathepsin K
          Length = 215

 Score = 27.3 bits (59), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 53  YWVIMNKQDYSWDDHGYSLMNRLYNDV 79
           +W+I N    SW + GY LM R  N+ 
Sbjct: 177 HWIIKNSWGESWGNAGYILMARNKNNA 203


>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
           Ervatamin-A Complexed With Irreversible Inhibitor E-64
 pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
           Ervatamin-A Complexed With Irreversible Inhibitor E-64
          Length = 209

 Score = 26.6 bits (57), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 53  YWVIMNKQDYSWDDHGYSLMNRL 75
           YW++ N     W + GY+ M R+
Sbjct: 168 YWIVRNSWGRHWGEQGYTRMKRV 190


>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
           K In Complex With The Covalent Inhibitor Nvp-Abe854
 pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
           K In Complex With The Covalent Inhibitor Nvp-Abi491
 pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
           K In Complex With The Covalent Inhibitor Nvp-Abj688
 pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
           Complex With Human Cathepsin K
          Length = 217

 Score = 25.8 bits (55), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 53  YWVIMNKQDYSWDDHGYSLMNRLYNDV 79
           +W+I N    +W + GY LM R  N+ 
Sbjct: 179 HWIIKNSWGENWGNKGYILMARNKNNA 205


>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
           Vinyl Sulfone Inhibitor
 pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
           K In Complex With A Covalent Azepanone Inhibitor
 pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
           K In Complex With A Covalent Azepanone Inhibitor
 pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
           K In Complex With A Covalent Azepanone Inhibitor
 pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
           K In Complex With A Covalent Azepanone Inhibitor
 pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
           Oxoethylcarbamate
 pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
 pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
 pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
 pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
 pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
           Inhibitor
 pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
           Inhibitor
 pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
           Myocrisin
 pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
 pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
 pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
           Substituted Azepan-3-One Compound
 pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
           Substituted Azepan-3-One Compound
 pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
           K In Complex With The Covalent Inhibitor E-64
 pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
           K In Complex With A Covalent Symmetric Diacylaminomethyl
           Ketone Inhibitor
 pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
           K In Complex With A Covalent Propanone Inhibitor
 pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
           K In Complex With A Covalent Pyrrolidinone Inhibitor
 pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
           K In Complex With A Covalent Pyrrolidinone Inhibitor
 pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
           In Complex With A Covalent Symmetric Biscarbohydrazide
           Inhibitor
 pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
           In Complex With A Covalent Thiazolhydrazide Inhibitor
 pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
           In Complex With A Covalent
           Benzyloxybenzoylcarbohydrazide Inhibitor
 pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
           In Complex With A Covalent Peptidomimetic Inhibitor
 pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
           Complex.
 pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
           Triazine Ligand
 pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
           Pyrimidine Inhibitor
 pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
           Inhibitor
 pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
           Inhibitor
 pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
           Inhibitor
 pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
           Inhibitor With A Benzyl P3 Group.
 pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
           Inhibitor With Improved Selectivity Over Herg
 pdb|4DMX|A Chain A, Cathepsin K Inhibitor
 pdb|4DMY|A Chain A, Cathepsin K Inhibitor
 pdb|4DMY|B Chain B, Cathepsin K Inhibitor
          Length = 215

 Score = 25.8 bits (55), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 53  YWVIMNKQDYSWDDHGYSLMNRLYNDV 79
           +W+I N    +W + GY LM R  N+ 
Sbjct: 177 HWIIKNSWGENWGNKGYILMARNKNNA 203


>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
           Norleucine Aldehyde
          Length = 214

 Score = 25.8 bits (55), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 53  YWVIMNKQDYSWDDHGYSLMNRLYNDV 79
           +W+I N    +W + GY LM R  N+ 
Sbjct: 176 HWIIKNSWGENWGNKGYILMARNKNNA 202


>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
           Ketoamide Warhead
          Length = 213

 Score = 25.8 bits (55), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 53  YWVIMNKQDYSWDDHGYSLMNRLYNDV 79
           +W+I N    +W + GY LM R  N+ 
Sbjct: 175 HWIIKNSWGENWGNKGYILMARNKNNA 201


>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
           Der P 1 In Its Pro Form At 1.61 A Resolution
          Length = 312

 Score = 25.8 bits (55), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 53  YWVIMNKQDYSWDDHGYS 70
           YW++ N  D +W D+GY 
Sbjct: 265 YWIVRNSWDTNWGDNGYG 282


>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
 pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
          Length = 222

 Score = 25.8 bits (55), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 53  YWVIMNKQDYSWDDHGYS 70
           YW++ N  D +W D+GY 
Sbjct: 185 YWIVRNSWDTNWGDNGYG 202


>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
           Endopeptidase Functioning In Programmed Cell Death Of
           Ricinus Communis Endosperm
 pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
           Endopeptidase Functioning In Programmed Cell Death Of
           Ricinus Communis Endosperm
          Length = 229

 Score = 25.8 bits (55), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 11/41 (26%), Positives = 17/41 (41%)

Query: 53  YWVIMNKQDYSWDDHGYSLMNRLYNDVGNLLDDKFKIAYNL 93
           YW + N     W + GY  M R  +D   L     + +Y +
Sbjct: 178 YWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPI 218


>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
 pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
          Length = 222

 Score = 25.4 bits (54), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 53  YWVIMNKQDYSWDDHGYS 70
           YW++ N  D +W D+GY 
Sbjct: 185 YWIVRNSWDTNWGDNGYG 202


>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
           Allergen
 pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
           Allergen
          Length = 222

 Score = 25.4 bits (54), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 53  YWVIMNKQDYSWDDHGYS 70
           YW++ N  D +W D+GY 
Sbjct: 185 YWIVRNSWDTNWGDNGYG 202


>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
 pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
 pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
 pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
 pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
          Length = 314

 Score = 25.4 bits (54), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 53  YWVIMNKQDYSWDDHGYSLMNRLYNDV 79
           +W+I N    +W + GY LM R  N+ 
Sbjct: 276 HWIIKNSWGENWGNKGYILMARNKNNA 302


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.141    0.450 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,090,215
Number of Sequences: 62578
Number of extensions: 142655
Number of successful extensions: 357
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 332
Number of HSP's gapped (non-prelim): 27
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 46 (22.3 bits)