Query psy10259
Match_columns 135
No_of_seqs 64 out of 66
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 21:53:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10259.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10259hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bkr_A Spectrin beta chain; fi 24.4 1.7E+02 0.0059 19.9 6.0 73 44-122 10-104 (109)
2 2av5_A Ribonuclease P protein 20.7 61 0.0021 22.6 2.5 22 102-123 27-48 (120)
3 2czv_C Ribonuclease P protein 20.4 62 0.0021 22.6 2.5 22 102-123 27-48 (120)
4 2d87_A Smoothelin splice isofo 18.8 2E+02 0.0069 20.3 4.9 74 44-123 14-110 (128)
5 1dw9_A Cyanate lyase; cyanate 17.6 69 0.0023 24.3 2.3 20 69-88 98-117 (156)
6 1wyq_A Spectrin beta chain, br 17.2 2.8E+02 0.0094 19.5 5.5 78 44-123 14-109 (127)
7 1bhd_A Utrophin; calponin homo 17.1 2.7E+02 0.0091 19.3 7.8 79 44-123 15-110 (118)
8 1wwp_A Hypothetical protein TT 14.9 1.9E+02 0.0066 19.6 3.9 60 24-84 53-115 (119)
9 2ql2_B Neurod1, neurogenic dif 13.2 2.7E+02 0.0092 17.4 4.0 41 81-122 15-55 (60)
10 1wty_A Hypothetical protein TT 11.5 1.3E+02 0.0045 20.5 2.2 68 15-84 45-113 (119)
No 1
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=24.44 E-value=1.7e+02 Score=19.94 Aligned_cols=73 Identities=21% Similarity=0.383 Sum_probs=42.9
Q ss_pred hhHHHhhccCCcccceecc--ccccch---hHHHHHhhhhHH-----------HHHHHHHHHHHhcchhcccCccCCCch
Q psy10259 44 AMCAVVRQTYWVIMNKQDY--SWDDHG---YSLMNRLYNDVG-----------NLLDDKFKIAYNLTYYTLAGRTQVDTS 107 (135)
Q Consensus 44 ~~~~~~R~~~~~tfr~qdY--SWedHG---fsLvnrlypd~a-----------~LLDekF~~~~~LTyntmg~~~~VDTs 107 (135)
.||..+- +.++..++.+| ||. -| ..|+.++.|++- +-+..-|++|. ..+|-.+=+|..
T Consensus 10 ~W~q~~~-~~y~~v~v~nFs~sw~-dG~af~aLih~~~P~lid~~~l~~~~~~~n~~~af~~Ae----~~lgi~~ll~~e 83 (109)
T 1bkr_A 10 LWCQMKT-AGYPNVNIHNFTTSWR-DGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLAE----QHLGLTKLLDPE 83 (109)
T ss_dssp HHHHHHT-TTCTTCCCSSSSGGGT-TSHHHHHHHHHHCGGGCCGGGCCTTCHHHHHHHHHHHHH----HHHCCCCCCCHH
T ss_pred HHHHHHH-ccCCCCCCCCCccccc-ccHHHHHHHHHHCcCCCCHHHcCcCCHHHHHHHHHHHHH----HHcCCCccCCHH
Confidence 4887543 35666788888 476 34 567899999842 12333355543 234433223322
Q ss_pred HH------HHHHHHHHHhhhc
Q psy10259 108 RF------RRAIWNYVQCLFG 122 (135)
Q Consensus 108 ~f------R~AIWnYiq~i~G 122 (135)
.+ .++|=.||.++|-
T Consensus 84 Dv~~~~pD~ksi~tYvs~~~~ 104 (109)
T 1bkr_A 84 DISVDHPDEKSIITYVVTYYH 104 (109)
T ss_dssp HHSSSSCCHHHHHHHHHHHHH
T ss_pred HccCCCCcHHHHHHHHHHHHH
Confidence 22 5788888888874
No 2
>2av5_A Ribonuclease P protein component 2; hydrolase; 3.15A {Pyrococcus furiosus} SCOP: d.58.59.1
Probab=20.73 E-value=61 Score=22.61 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.5
Q ss_pred cCCCchHHHHHHHHHHHhhhcc
Q psy10259 102 TQVDTSRFRRAIWNYVQCLFGI 123 (135)
Q Consensus 102 ~~VDTs~fR~AIWnYiq~i~GI 123 (135)
++++...+.+|||+=++.+||-
T Consensus 27 ~~l~~~~l~~~I~~av~~~fGd 48 (120)
T 2av5_A 27 NQFNKDEIKEAIWNACLRTLGE 48 (120)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCc
Confidence 3588999999999999999984
No 3
>2czv_C Ribonuclease P protein component 2; RNA binding protein, RNA recognition motif, protein-protein complex, hydrolase; HET: BOG; 2.00A {Pyrococcus horikoshii} SCOP: d.58.59.1
Probab=20.43 E-value=62 Score=22.62 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=19.6
Q ss_pred cCCCchHHHHHHHHHHHhhhcc
Q psy10259 102 TQVDTSRFRRAIWNYVQCLFGI 123 (135)
Q Consensus 102 ~~VDTs~fR~AIWnYiq~i~GI 123 (135)
++++...+.+|||+=++.+||-
T Consensus 27 ~~l~~~~l~~~I~~av~~~fGd 48 (120)
T 2czv_C 27 GDFTKDEVKELIWKSSLEVLGE 48 (120)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcCc
Confidence 3589999999999999999984
No 4
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=18.76 E-value=2e+02 Score=20.30 Aligned_cols=74 Identities=18% Similarity=0.415 Sum_probs=43.5
Q ss_pred hhHHHhhccCCcccceecc--ccccch---hHHHHHhhhhHHH-----------HHHHHHHHHHhcchhcccCccCCCch
Q psy10259 44 AMCAVVRQTYWVIMNKQDY--SWDDHG---YSLMNRLYNDVGN-----------LLDDKFKIAYNLTYYTLAGRTQVDTS 107 (135)
Q Consensus 44 ~~~~~~R~~~~~tfr~qdY--SWedHG---fsLvnrlypd~a~-----------LLDekF~~~~~LTyntmg~~~~VDTs 107 (135)
.||..+=. .++..++.+| ||.| | ..|++++.|++-+ -+..-|++|.. .+|-.+=+|..
T Consensus 14 ~W~q~~~~-~y~~v~V~nFs~sw~D-G~af~aLih~~~P~lid~~~l~~~~~~~n~~~af~~Ae~----~lgip~lL~pe 87 (128)
T 2d87_A 14 DWCRAKTR-GYEHVDIQNFSSSWSD-GMAFCALVHNFFPEAFDYGQLSPQNRRQNFEVAFSSAET----HADCPQLLDTE 87 (128)
T ss_dssp HHHHHHSS-SCTTCCCSCTTTTTTS-SHHHHHHHHHHCTTTSCSTTSCSSCHHHHHHHHHHHHHH----HHCCCCCSCHH
T ss_pred HHHHHHhc-cCCCCCCCCccccccc-cHHHHHHHHHHCcCcCCHHHcCccCHHHHHHHHHHHHHH----cCCCCcccCHH
Confidence 48766443 3556677887 5863 4 5788999998532 12333444443 34443444444
Q ss_pred HH-------HHHHHHHHHhhhcc
Q psy10259 108 RF-------RRAIWNYVQCLFGI 123 (135)
Q Consensus 108 ~f-------R~AIWnYiq~i~GI 123 (135)
-+ .++|--||.++|-.
T Consensus 88 D~v~~~~pD~ksvmtYvs~l~~~ 110 (128)
T 2d87_A 88 DMVRLREPDWKCVYTYIQEFYRC 110 (128)
T ss_dssp HHHHSSSCCHHHHHHHHHHHHHH
T ss_pred HHhccCCccHHHHHHHHHHHHHH
Confidence 33 47888888887743
No 5
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=17.60 E-value=69 Score=24.32 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=18.5
Q ss_pred hHHHHHhhhhHHHHHHHHHH
Q psy10259 69 YSLMNRLYNDVGNLLDDKFK 88 (135)
Q Consensus 69 fsLvnrlypd~a~LLDekF~ 88 (135)
|++|.-|-+-+-++|+|||-
T Consensus 98 yE~v~vYG~~~K~li~E~FG 117 (156)
T 1dw9_A 98 YEMLQVYGTTLKALVHEKFG 117 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHcC
Confidence 88999999999999999983
No 6
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=17.21 E-value=2.8e+02 Score=19.48 Aligned_cols=78 Identities=21% Similarity=0.374 Sum_probs=44.9
Q ss_pred hhHHHhhccCCcccceecc--ccccch---hHHHHHhhhhHH-----------HHHHHHHHHHHh-cchhcccCccCCCc
Q psy10259 44 AMCAVVRQTYWVIMNKQDY--SWDDHG---YSLMNRLYNDVG-----------NLLDDKFKIAYN-LTYYTLAGRTQVDT 106 (135)
Q Consensus 44 ~~~~~~R~~~~~tfr~qdY--SWedHG---fsLvnrlypd~a-----------~LLDekF~~~~~-LTyntmg~~~~VDT 106 (135)
.||..+-. .++..++.+| ||.| | ..|+.++.|++- +-+..-|++|.+ |-=-.+-.-++|+.
T Consensus 14 ~W~q~~~~-~y~~v~V~nFs~sw~D-G~Af~aLih~~~P~lid~~~l~~~~~~~n~~~af~~Ae~~Lgi~~ll~~eDv~~ 91 (127)
T 1wyq_A 14 LWCQMKTA-GYPNVNVHNFTTSWRD-GLAFNAIVHKHRPDLLDFESLKKCNAHYNLQNAFNLAEKELGLTKLLDPEDVNV 91 (127)
T ss_dssp HHHHHHHH-TSSSCCCSCSSTTSSS-SHHHHHHHHHHCTTTCCTTTSCSSCCHHHHHHHHHHHHHTTCCCCCSCTTTSCS
T ss_pred HHHHHHHh-cCCCCCCCCCcccccc-cHHHHHHHHHHCcCcCCHHHhCcCCHHHHHHHHHHHHHHHcCCCcccCHHHhcc
Confidence 48875433 4666778888 5863 4 567899999853 223444555542 22222223344432
Q ss_pred -hHHHHHHHHHHHhhhcc
Q psy10259 107 -SRFRRAIWNYVQCLFGI 123 (135)
Q Consensus 107 -s~fR~AIWnYiq~i~GI 123 (135)
.+=.++|=.||.++|-.
T Consensus 92 ~~pDeksimtYvs~l~~~ 109 (127)
T 1wyq_A 92 DQPDEKSIITYVATYYHY 109 (127)
T ss_dssp SSCCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 12267888898887743
No 7
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=17.11 E-value=2.7e+02 Score=19.26 Aligned_cols=79 Identities=15% Similarity=0.321 Sum_probs=45.1
Q ss_pred hhHHHhhccCCcccceeccc--ccc-ch-hHHHHHhhhhHH---HHH----HHHHHHHHhcchhcccCccCCCchHH---
Q psy10259 44 AMCAVVRQTYWVIMNKQDYS--WDD-HG-YSLMNRLYNDVG---NLL----DDKFKIAYNLTYYTLAGRTQVDTSRF--- 109 (135)
Q Consensus 44 ~~~~~~R~~~~~tfr~qdYS--Wed-HG-fsLvnrlypd~a---~LL----DekF~~~~~LTyntmg~~~~VDTs~f--- 109 (135)
.||..+=. .++..++.+|+ |.| .+ ..|+.++.|++- .+- -+.++.|-+.--..+|-.+=+|..-+
T Consensus 15 ~W~q~~~~-~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~~~l~~~~~~~n~~~af~~Ae~~lgi~~ll~~eDv~~~ 93 (118)
T 1bhd_A 15 SWVRQTTR-PYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVKMSPIERLEHAFSKAQTYLGIEKLLDPEDVAVR 93 (118)
T ss_dssp HHHHHHHT-TSTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHHHSCHHHHHHHHHHHHHHHHCCCCCSCHHHHHTS
T ss_pred HHHHHHhc-cCCCCCCCCCcccccCcHHHHHHHHHHCcCcCCHHHhCcCCHHHHHHHHHHHHHHHcCCCcccCHHHhhcC
Confidence 48866543 55667788886 863 22 577899999742 221 11133333333334554444443333
Q ss_pred ---HHHHHHHHHhhhcc
Q psy10259 110 ---RRAIWNYVQCLFGI 123 (135)
Q Consensus 110 ---R~AIWnYiq~i~GI 123 (135)
.++|-.||.++|-.
T Consensus 94 ~pD~ksvmtYvs~l~~~ 110 (118)
T 1bhd_A 94 LPDKKSIIMYLTSLFEV 110 (118)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 47888999888754
No 8
>1wwp_A Hypothetical protein TTHA0636; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 2.11A {Thermus thermophilus HB8}
Probab=14.93 E-value=1.9e+02 Score=19.65 Aligned_cols=60 Identities=3% Similarity=-0.005 Sum_probs=41.4
Q ss_pred cCchhhhhhHHHHHHhhchh---hhHHHhhccCCcccceeccccccchhHHHHHhhhhHHHHHH
Q psy10259 24 TTNRRKLLFQKTMITIISTM---AMCAVVRQTYWVIMNKQDYSWDDHGYSLMNRLYNDVGNLLD 84 (135)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~---~~~~~~R~~~~~tfr~qdYSWedHGfsLvnrlypd~a~LLD 84 (135)
..+||..+-.-.=+.||+.. .|.+-++.++..+..-.+-.++ --|..+..+.|++-.+++
T Consensus 53 ~~s~rd~~r~a~~~glI~~~~~~~w~~m~~~RN~~vH~Y~~~~~~-~v~~~i~~~l~~~~~l~~ 115 (119)
T 1wwp_A 53 GASPKGVIRLAREVGLLRDEEARLALGMVDDRSLTVHTYNEPLAR-AIFRRLPDYARLMEQVLG 115 (119)
T ss_dssp CCSHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHGGGTTSHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCchHHHHHHHHHHHhhHhcccccHhhHH-HHHHHHHHHHHHHHHHHH
Confidence 78888877776677888777 5888888887765555554554 346665557777766654
No 9
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=13.25 E-value=2.7e+02 Score=17.41 Aligned_cols=41 Identities=15% Similarity=0.076 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhcchhcccCccCCCchHHHHHHHHHHHhhhc
Q psy10259 81 NLLDDKFKIAYNLTYYTLAGRTQVDTSRFRRAIWNYVQCLFG 122 (135)
Q Consensus 81 ~LLDekF~~~~~LTyntmg~~~~VDTs~fR~AIWnYiq~i~G 122 (135)
+-|++-|+..+.+-=..-...+---...+|.|| .||+.+-.
T Consensus 15 ~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai-~YI~~L~~ 55 (60)
T 2ql2_B 15 HGLNAALDNLRKVVPCYSKTQKLSKIETLRLAK-NYIWALSE 55 (60)
T ss_dssp HHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHH-HHHHHHHH
Confidence 346677777666542211122222356788887 77876543
No 10
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=11.53 E-value=1.3e+02 Score=20.48 Aligned_cols=68 Identities=6% Similarity=0.048 Sum_probs=43.3
Q ss_pred hhceeeeeecCchhhhhhHHHHHHhhchh-hhHHHhhccCCcccceeccccccchhHHHHHhhhhHHHHHH
Q psy10259 15 LVGYHLVFDTTNRRKLLFQKTMITIISTM-AMCAVVRQTYWVIMNKQDYSWDDHGYSLMNRLYNDVGNLLD 84 (135)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~R~~~~~tfr~qdYSWedHGfsLvnrlypd~a~LLD 84 (135)
++-|.-+ ...+||..+-.-.=+.||+.. .|.+-++.++..+..-.+-.++ --|..+.++.|++-++++
T Consensus 45 ~l~~~g~-~~~s~rd~~r~a~~~glI~~~~~w~~m~~~RN~~vH~Y~~~~a~-~v~~~i~~~l~~~~~l~~ 113 (119)
T 1wty_A 45 FLELQGL-EARSPRAAIRGAFQVGLLPEDPFWLEMLELRNLTNHTYDEALAE-RIYAELPKALERFQELLR 113 (119)
T ss_dssp HHHHHTC-CCSSHHHHHHHHHHHTSSCCCHHHHHHHHHHHHGGGTTSHHHHH-HHHTTHHHHHHHHHHHHH
T ss_pred HHHHcCC-CCCCHHHHHHHHHHcCCCCcHHHHHHHHHHhhHhcccccHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3334444 688898877666666777554 6888877777655444444444 346666677777776654
Done!